AlfalfaGEDB | Msa0026490

M. sativa cultivar zhongmu-4 / Msa0026490

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF13405.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012060	Msa0026490	0.801061	1.075566e-48	-8.615850e-47
Msa0017510	Msa0026490	0.802502	5.443535e-49	-8.615850e-47
Msa0026470	Msa0026490	0.807288	5.439177e-50	-8.615850e-47
Msa0026490	Msa0037700	0.819299	1.249528e-52	-8.615850e-47
Msa0026490	Msa0057520	0.814889	1.223973e-51	-8.615850e-47
Msa0026490	Msa0063350	-0.810904	9.141972e-51	-8.615850e-47
Msa0026490	Msa0091210	-0.800202	1.609441e-48	-8.615850e-47
Msa0026490	Msa0112750	0.800269	1.559766e-48	-8.615850e-47
Msa0026490	Msa0133130	0.807211	5.646288e-50	-8.615850e-47
Msa0026490	Msa0145280	0.816729	4.760035e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0026490	MtrunA17_Chr1g0153581	94.737	95	1	1	1	91	1	95	3.49e-61	181
Msa0026490	MtrunA17_Chr1g0153601	89.474	95	6	1	1	91	1	95	3.08e-55	166
Msa0026490	MtrunA17_Chr1g0153561	86.316	95	9	1	1	91	1	95	1.54e-54	164
Msa0026490	MtrunA17_Chr1g0153611	65.591	93	29	1	1	90	1	93	1.16e-38	124
Msa0026490	MtrunA17_Chr1g0153551	45.000	100	46	1	1	91	1	100	2.50e-19	75.5
Msa0026490	MtrunA17_Chr1g0153541	43.678	87	45	1	5	91	21	103	2.01e-16	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 23 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGATGCCAATAAAGA+CGG	0.628000	1_1:-50323551	Msa0026490:CDS
AACGATTGGCTCTCCATCCA+GGG	0.580860	1_1:+50323582	None:intergenic
AAGGCGGATATCAATAACGA+TGG	0.697636	1_1:-50323659	Msa0026490:CDS
AATAAAGACGGACTAATCAG+TGG	0.668016	1_1:-50323539	Msa0026490:CDS
ACCCTCTTTGGGATAAACAC+AGG	0.645492	1_1:+50323731	None:intergenic
ACTGATTAGTCCGTCTTTAT+TGG	0.241517	1_1:+50323541	None:intergenic
AGACGGACTAATCAGTGGCG+AGG	0.659853	1_1:-50323534	Msa0026490:CDS
AGCTTTCATCAAACAACGAT+TGG	0.498009	1_1:+50323568	None:intergenic
ATTAGTTCTTGCCAAAACCA+CGG	0.592102	1_1:+50323480	None:intergenic
ATTGATTATCTCCTTACCCG+TGG	0.619921	1_1:-50323497	Msa0026490:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGATCAAATCAACTTTGAA+AGG	-	chr1_1:50323512-50323531	Msa0026490:CDS	30.0%
TATAGAAAAATTGGAGAAGG+CGG	-	chr1_1:50323540-50323559	Msa0026490:CDS	30.0%
AGCTTTCATCAAACAACGAT+TGG	+	chr1_1:50323650-50323669	None:intergenic	35.0%
AAAGCTGATGCCAATAAAGA+CGG	-	chr1_1:50323664-50323683	Msa0026490:CDS	35.0%
AAGGCGGATATCAATAACGA+TGG	-	chr1_1:50323556-50323575	Msa0026490:CDS	40.0%
ATTGATTATCTCCTTACCCG+TGG	-	chr1_1:50323718-50323737	Msa0026490:CDS	40.0%
TGCCTGTGTTTATCCCAAAG+AGG	-	chr1_1:50323482-50323501	Msa0026490:CDS	45.0%
GCCTGTGTTTATCCCAAAGA+GGG	-	chr1_1:50323483-50323502	Msa0026490:CDS	45.0%
GATCCATAGACACCCTCTTT+GGG	+	chr1_1:50323498-50323517	None:intergenic	45.0%
TGATCCATAGACACCCTCTT+TGG	+	chr1_1:50323499-50323518	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	50323481	50323756	50323481	ID=Msa0026490;Name=Msa0026490
chr1_1	mRNA	50323481	50323756	50323481	ID=Msa0026490-mRNA-1;Parent=Msa0026490;Name=Msa0026490-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|91
chr1_1	exon	50323481	50323756	50323481	ID=Msa0026490-mRNA-1:exon:14630;Parent=Msa0026490-mRNA-1
chr1_1	CDS	50323481	50323756	50323481	ID=Msa0026490-mRNA-1:cds;Parent=Msa0026490-mRNA-1

Gene Sequence	>Msa0026490 ATGCCTGTGTTTATCCCAAAGAGGGTGTCTATGGATCAAATCAACTTTGAAAGGAACATTATAGAAAAATTGGAGAAGGCGGATATCAATAACGATGGTCGTTACACAAAGAAGGAACTCAAAAAAGCTCTAAAGGATTTAGGTTCTTACTACCCTGGATGGAGAGCCAATCGTTGTTTGATGAAAGCTGATGCCAATAAAGACGGACTAATCAGTGGCGAGGAAATCGACACTTTAATTGATTATCTCCTTACCCGTGGTTTTGGCAAGAACTAA
Protein sequence	>Msa0026490 MPVFIPKRVSMDQINFERNIIEKLEKADINNDGRYTKKELKKALKDLGSYYPGWRANRCLMKADANKDGLISGEEIDTLIDYLLTRGFGKN*