AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1147910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147910 MtrunA17_Chr7g0234821 96.760 463 15 0 1 463 1 463 0.0 929
Msa1147910 MtrunA17_Chr8g0339191 71.058 463 129 3 1 463 6 463 0.0 703
Msa1147910 MtrunA17_Chr4g0046311 54.725 455 196 3 1 452 4 451 0.0 549
Msa1147910 MtrunA17_Chr1g0177171 41.921 458 238 7 27 460 39 492 1.22e-123 369
Msa1147910 MtrunA17_Chr5g0439251 40.774 439 243 6 27 452 26 460 7.48e-116 348
Msa1147910 MtrunA17_Chr6g0487261 39.783 460 260 9 4 458 7 454 2.38e-114 345
Msa1147910 MtrunA17_Chr8g0389741 39.723 433 251 6 27 458 29 452 4.52e-111 337
Msa1147910 MtrunA17_Chr4g0034901 37.443 438 264 6 27 460 30 461 1.77e-103 316
Msa1147910 MtrunA17_Chr3g0144531 36.739 460 273 9 3 458 9 454 1.22e-99 306
Msa1147910 MtrunA17_Chr4g0003281 42.135 356 200 5 2 355 15 366 4.29e-99 303
Msa1147910 MtrunA17_Chr3g0110371 35.065 462 279 8 1 459 3 446 1.04e-94 294
Msa1147910 MtrunA17_Chr4g0075031 37.474 475 263 10 5 459 7 467 3.09e-94 294
Msa1147910 MtrunA17_Chr8g0378621 34.633 436 269 6 27 459 27 449 6.93e-93 290
Msa1147910 MtrunA17_Chr5g0434591 33.477 463 286 9 1 459 1 445 4.09e-90 283
Msa1147910 MtrunA17_Chr1g0161011 33.406 461 288 8 1 458 1 445 7.92e-90 282
Msa1147910 MtrunA17_Chr4g0043851 43.385 325 178 5 27 350 33 352 1.02e-89 278
Msa1147910 MtrunA17_Chr3g0119541 42.593 324 181 4 24 346 24 343 1.48e-88 274
Msa1147910 MtrunA17_Chr4g0026321 40.419 334 193 5 27 359 30 358 8.14e-88 273
Msa1147910 MtrunA17_Chr3g0121271 32.972 461 283 9 4 458 6 446 1.24e-87 276
Msa1147910 MtrunA17_Chr4g0043511 36.659 461 269 10 15 459 51 504 1.40e-87 278
Msa1147910 MtrunA17_Chr2g0285901 41.092 348 198 5 1 348 1 341 1.34e-86 270
Msa1147910 MtrunA17_Chr2g0321511 39.344 366 198 9 2 360 10 358 4.05e-86 269
Msa1147910 MtrunA17_Chr7g0223961 37.585 439 253 11 27 458 24 448 9.22e-85 267
Msa1147910 MtrunA17_Chr1g0146831 45.483 321 165 6 27 345 32 344 4.35e-84 263
Msa1147910 MtrunA17_Chr1g0189111 41.667 324 182 5 27 349 32 349 1.37e-81 258
Msa1147910 MtrunA17_Chr4g0064021 36.858 331 204 4 21 350 21 347 3.29e-79 251
Msa1147910 MtrunA17_Chr1g0155001 38.154 325 195 5 27 349 25 345 1.83e-71 232
Msa1147910 MtrunA17_Chr2g0294591 35.347 331 200 8 23 351 27 345 1.34e-65 215
Msa1147910 MtrunA17_Chr4g0038981 36.337 344 194 11 4 344 3 324 1.68e-64 211
Msa1147910 MtrunA17_Chr2g0294601 35.227 352 207 11 3 351 41 374 1.35e-63 211
Msa1147910 MtrunA17_Chr4g0038941 36.420 324 187 8 27 349 53 358 1.89e-62 206
Msa1147910 MtrunA17_Chr4g0038961 36.390 349 197 11 4 349 3 329 4.67e-62 204
Msa1147910 MtrunA17_Chr8g0383311 32.880 441 271 16 27 459 44 467 8.64e-62 209
Msa1147910 MtrunA17_Chr7g0250301 34.906 318 195 6 27 344 9 314 1.03e-61 203
Msa1147910 MtrunA17_Chr4g0039011 34.203 345 205 9 14 355 30 355 1.44e-61 204
Msa1147910 MtrunA17_Chr4g0039071 34.347 329 204 6 19 346 18 335 5.08e-61 203
Msa1147910 MtrunA17_Chr4g0038971 35.530 349 200 11 4 349 3 329 3.44e-60 200
Msa1147910 MtrunA17_Chr2g0306311 29.448 489 286 17 9 459 15 482 5.38e-59 202
Msa1147910 MtrunA17_Chr1g0174261 38.095 294 168 7 55 346 1 282 1.02e-58 196
Msa1147910 MtrunA17_Chr4g0062771 30.472 466 289 19 7 459 14 457 2.37e-58 199
Msa1147910 MtrunA17_Chr1g0148391 30.193 467 284 18 6 458 10 448 2.84e-56 194
Msa1147910 MtrunA17_Chr2g0290821 31.828 443 276 16 24 458 26 450 6.51e-56 193
Msa1147910 MtrunA17_Chr4g0039021 36.644 292 167 8 53 341 8 284 2.79e-55 186
Msa1147910 MtrunA17_Chr3g0138741 30.995 442 276 16 27 458 32 454 5.26e-55 191
Msa1147910 MtrunA17_Chr4g0069801 31.034 435 264 19 38 458 39 451 9.39e-55 190
Msa1147910 MtrunA17_Chr3g0129341 29.957 464 298 17 5 459 11 456 2.47e-54 189
Msa1147910 MtrunA17_Chr5g0436361 36.688 308 183 8 45 349 56 354 4.77e-52 180
Msa1147910 MtrunA17_Chr7g0250321 35.206 267 164 4 27 293 29 286 5.68e-51 174
Msa1147910 MtrunA17_Chr4g0076581 31.011 445 278 16 24 458 31 456 1.61e-50 179
Msa1147910 MtrunA17_Chr3g0105981 27.650 434 284 16 18 443 19 430 1.24e-45 164
Msa1147910 MtrunA17_Chr6g0461601 26.966 445 294 17 27 458 27 453 3.05e-43 159
Msa1147910 MtrunA17_Chr7g0253091 26.966 445 291 19 27 458 27 450 4.14e-41 153
Msa1147910 MtrunA17_Chr5g0401301 22.951 427 266 10 55 458 28 414 1.63e-26 110
Msa1147910 MtrunA17_Chr2g0294581 33.140 172 104 4 23 190 73 237 6.29e-24 101
Msa1147910 MtrunA17_Chr1g0213651 47.191 89 46 1 370 458 272 359 3.55e-20 91.7
Msa1147910 MtrunA17_Chr5g0447651 41.414 99 55 1 360 458 19 114 3.84e-20 85.9
Msa1147910 MtrunA17_Chr8g0378381 44.444 90 49 1 370 459 28 116 1.40e-19 84.3
Msa1147910 MtrunA17_Chr4g0076131 41.176 85 50 0 374 458 28 112 6.96e-19 82.4
Msa1147910 MtrunA17_Chr8g0378361 46.067 89 47 1 374 462 30 117 1.52e-18 83.6
Msa1147910 MtrunA17_Chr8g0364811 47.561 82 43 0 129 210 2 83 1.84e-18 80.1
Msa1147910 MtrunA17_Chr8g0381081 39.216 102 61 1 360 460 42 143 1.55e-17 80.5
Msa1147910 MtrunA17_Chr3g0096451 38.532 109 65 2 352 459 89 196 2.09e-17 82.0
Msa1147910 MtrunA17_Chr3g0120401 44.330 97 53 1 365 461 148 243 2.62e-17 81.3
Msa1147910 MtrunA17_Chr8g0378371 43.820 89 46 2 372 460 31 115 1.45e-16 75.9
Msa1147910 MtrunA17_Chr4g0040911 43.956 91 51 0 370 460 33 123 1.90e-16 77.0
Msa1147910 MtrunA17_Chr8g0378401 43.373 83 46 1 370 452 28 109 2.01e-15 72.4
Msa1147910 MtrunA17_Chr5g0443331 38.710 93 56 1 370 462 104 195 2.33e-15 76.3
Msa1147910 MtrunA17_Chr4g0076141 40.506 79 47 0 374 452 13 91 3.98e-15 71.2
Msa1147910 MtrunA17_Chr4g0018861 35.659 129 68 3 245 373 79 192 4.87e-15 74.3
Msa1147910 MtrunA17_Chr4g0018771 35.484 124 65 3 250 373 86 194 5.14e-15 74.3
Msa1147910 MtrunA17_Chr2g0304061 43.529 85 46 2 374 458 158 240 1.23e-13 72.0
Msa1147910 MtrunA17_Chr1g0154991 38.235 102 59 3 358 458 5 103 2.28e-13 66.2
Msa1147910 MtrunA17_Chr7g0271411 40.698 86 50 1 374 459 160 244 4.56e-13 69.7
Msa1147910 MtrunA17_Chr1g0193131 40.000 85 49 2 370 454 416 498 4.58e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147910 AT3G07320.1 66.290 442 147 1 22 463 21 460 0.0 629
Msa1147910 AT4G14080.1 52.818 479 209 2 1 463 1 478 0.0 540
Msa1147910 AT3G23770.1 56.054 446 192 2 21 463 32 476 0.0 540
Msa1147910 AT4G26830.1 41.379 464 248 7 6 460 5 453 5.38e-128 379
Msa1147910 AT4G26830.2 42.282 447 234 7 23 460 26 457 7.18e-127 376
Msa1147910 AT5G55180.1 42.760 442 234 7 27 460 28 458 6.70e-126 374
Msa1147910 AT5G55180.2 42.627 434 230 7 27 452 28 450 8.93e-121 361
Msa1147910 AT2G05790.1 39.421 449 253 7 27 460 26 470 4.09e-116 349
Msa1147910 AT5G56590.1 38.952 439 259 6 22 458 22 453 6.41e-108 329
Msa1147910 AT4G29360.2 38.998 459 254 6 21 458 32 485 5.19e-105 323
Msa1147910 AT4G29360.1 38.998 459 254 6 21 458 22 475 5.95e-105 322
Msa1147910 AT5G24318.1 38.043 460 274 7 1 458 5 455 1.76e-103 316
Msa1147910 AT5G24318.2 37.885 454 271 7 1 452 5 449 2.23e-99 305
Msa1147910 AT4G34480.1 37.069 464 271 7 1 459 1 448 3.50e-96 299
Msa1147910 AT2G16230.1 37.215 438 257 8 27 459 26 450 1.52e-94 295
Msa1147910 AT2G01630.1 36.009 436 262 7 27 459 24 445 1.06e-93 292
Msa1147910 AT3G55430.1 37.071 437 253 12 27 458 30 449 2.61e-91 285
Msa1147910 AT2G01630.3 35.664 429 259 7 27 452 24 438 1.69e-90 282
Msa1147910 AT3G13560.4 34.023 435 269 7 27 458 27 446 1.57e-88 279
Msa1147910 AT3G13560.1 34.023 435 269 7 27 458 27 446 1.57e-88 279
Msa1147910 AT3G13560.2 34.023 435 269 7 27 458 27 446 1.57e-88 279
Msa1147910 AT3G13560.5 34.023 435 269 7 27 458 27 446 1.57e-88 279
Msa1147910 AT3G13560.3 34.023 435 269 7 27 458 27 446 1.57e-88 279
Msa1147910 AT1G66250.1 34.023 435 269 8 27 458 33 452 4.11e-88 278
Msa1147910 AT1G11820.2 33.716 436 272 7 27 459 45 466 7.89e-88 278
Msa1147910 AT3G15800.1 41.411 326 185 5 27 350 44 365 1.94e-86 270
Msa1147910 AT4G18340.2 39.665 358 205 7 3 356 13 363 3.67e-85 266
Msa1147910 AT4G18340.1 39.665 358 205 7 3 356 13 363 7.36e-85 266
Msa1147910 AT1G11820.3 33.100 429 270 7 27 452 45 459 1.73e-83 265
Msa1147910 AT2G27500.2 38.602 329 197 4 27 354 30 354 4.12e-83 261
Msa1147910 AT2G27500.1 38.602 329 197 4 27 354 30 354 1.38e-82 260
Msa1147910 AT1G30080.2 40.407 344 199 5 4 346 14 352 2.20e-82 259
Msa1147910 AT1G30080.1 40.407 344 199 5 4 346 14 352 4.65e-82 259
Msa1147910 AT5G24318.4 40.286 350 199 6 1 348 5 346 1.75e-81 257
Msa1147910 AT1G32860.1 39.875 321 189 4 27 346 30 347 5.49e-79 252
Msa1147910 AT5G42720.1 39.601 351 202 6 4 352 8 350 1.00e-78 252
Msa1147910 AT2G39640.1 35.000 460 267 15 4 459 12 443 5.19e-76 248
Msa1147910 AT2G26600.1 35.714 336 211 4 21 355 29 360 6.62e-76 243
Msa1147910 AT4G34480.2 38.095 357 216 4 1 356 1 353 5.53e-75 239
Msa1147910 AT3G57270.1 38.739 333 190 7 18 348 19 339 1.66e-74 238
Msa1147910 AT5G42100.2 39.024 328 193 6 24 348 25 348 2.36e-74 240
Msa1147910 AT5G42100.1 39.024 328 193 6 24 348 25 348 3.54e-74 239
Msa1147910 AT3G61810.1 37.870 338 194 5 17 349 46 372 4.01e-73 235
Msa1147910 AT5G24318.3 39.677 310 179 4 149 458 15 316 2.21e-71 229
Msa1147910 AT2G01630.2 35.000 380 230 7 27 403 24 389 5.74e-71 230
Msa1147910 AT4G34480.3 38.462 351 195 7 114 459 3 337 2.97e-70 228
Msa1147910 AT4G16260.1 37.092 337 195 10 5 339 4 325 1.18e-67 220
Msa1147910 AT2G27500.3 38.351 279 167 4 77 354 2 276 1.84e-65 213
Msa1147910 AT3G46570.1 37.615 327 193 7 25 348 26 344 1.77e-64 212
Msa1147910 AT5G20340.1 36.872 358 200 11 3 346 8 353 1.14e-63 210
Msa1147910 AT5G20330.1 37.353 340 197 9 3 338 8 335 1.65e-63 209
Msa1147910 AT1G33220.1 37.048 332 193 9 3 330 8 327 6.77e-63 207
Msa1147910 AT5G20390.1 37.353 340 195 10 3 338 9 334 1.36e-62 207
Msa1147910 AT4G16260.2 36.893 309 179 9 33 339 2 296 3.03e-61 202
Msa1147910 AT3G24330.1 30.819 464 296 16 5 459 18 465 7.94e-61 207
Msa1147910 AT2G26600.2 37.037 270 165 4 87 355 1 266 2.54e-60 199
Msa1147910 AT3G57260.1 33.237 346 213 8 4 349 12 339 3.39e-60 200
Msa1147910 AT1G11820.1 33.028 327 212 5 27 350 45 367 3.84e-60 202
Msa1147910 AT3G57260.2 33.526 346 212 8 4 349 28 355 5.58e-60 200
Msa1147910 AT1G77780.1 33.721 344 214 8 5 346 1 332 3.18e-58 196
Msa1147910 AT3G57240.1 33.544 316 191 8 25 339 34 331 1.25e-54 186
Msa1147910 AT4G31140.1 28.959 442 283 17 27 458 28 448 4.66e-54 188
Msa1147910 AT5G20870.1 30.591 474 289 21 3 459 10 460 1.43e-51 182
Msa1147910 AT4G17180.1 30.201 447 281 16 19 458 18 440 3.49e-49 175
Msa1147910 AT5G18220.1 29.638 469 291 20 5 459 13 456 9.86e-49 174
Msa1147910 AT1G77790.1 31.562 320 210 5 27 346 31 341 2.87e-48 169
Msa1147910 AT3G55780.1 32.063 315 200 8 40 349 49 354 2.93e-48 170
Msa1147910 AT5G20560.1 35.191 341 204 10 3 338 8 336 4.72e-47 166
Msa1147910 AT5G58090.1 28.700 446 291 16 23 459 19 446 1.32e-46 168
Msa1147910 AT5G64790.1 27.477 444 291 15 27 459 29 452 1.54e-46 168
Msa1147910 AT3G04010.1 28.078 463 297 19 11 459 18 458 3.68e-46 167
Msa1147910 AT5G58480.1 27.191 445 284 16 27 458 27 444 1.45e-42 157
Msa1147910 AT2G19440.2 28.217 443 289 19 27 459 22 445 7.33e-42 155
Msa1147910 AT2G19440.1 28.217 443 289 19 27 459 22 445 7.33e-42 155
Msa1147910 AT1G64760.1 27.703 444 290 20 27 459 26 449 4.48e-40 150
Msa1147910 AT1G64760.2 27.703 444 290 20 27 459 26 449 4.48e-40 150
Msa1147910 AT5G67460.1 42.991 107 55 2 358 458 271 377 1.37e-21 96.7
Msa1147910 AT5G67460.2 42.574 101 52 2 358 452 271 371 1.30e-18 87.8
Msa1147910 AT5G35740.1 38.614 101 60 2 359 458 16 115 3.59e-18 80.9
Msa1147910 AT4G13600.1 47.126 87 45 1 373 459 60 145 5.60e-17 80.5
Msa1147910 AT4G05430.1 35.644 101 64 1 359 458 7 107 6.70e-17 77.8
Msa1147910 AT2G04910.2 39.773 88 53 0 374 461 15 102 9.81e-17 76.3
Msa1147910 AT2G30933.1 43.820 89 49 1 374 462 82 169 2.75e-16 78.6
Msa1147910 AT1G79480.1 41.176 85 49 1 374 458 311 394 8.29e-16 79.3
Msa1147910 AT1G79480.2 41.176 85 49 1 374 458 310 393 8.47e-16 79.3
Msa1147910 AT5G61130.1 39.560 91 54 1 369 459 16 105 1.14e-15 75.9
Msa1147910 AT1G66870.2 35.227 88 57 0 371 458 50 137 1.97e-15 73.6
Msa1147910 AT4G05430.3 34.951 103 66 1 359 460 32 134 2.02e-15 74.3
Msa1147910 AT4G09462.1 36.842 95 59 1 366 460 21 114 3.21e-15 72.0
Msa1147910 AT1G66870.1 35.227 88 57 0 371 458 23 110 3.24e-15 72.0
Msa1147910 AT1G29380.1 41.176 85 49 1 374 458 148 231 2.07e-14 74.3
Msa1147910 AT1G29380.3 41.379 87 50 1 374 460 148 233 2.29e-14 73.6
Msa1147910 AT4G09464.1 37.079 89 55 1 372 460 29 116 2.91e-14 69.7
Msa1147910 AT4G09467.1 37.079 89 55 1 372 460 29 116 2.91e-14 69.7
Msa1147910 AT4G09465.1 37.079 89 55 1 372 460 29 116 2.94e-14 69.7
Msa1147910 AT1G18650.1 39.130 92 55 1 369 460 16 106 3.35e-14 71.2
Msa1147910 AT5G63250.1 33.333 108 66 2 355 460 27 130 3.61e-14 69.7
Msa1147910 AT3G58100.1 37.079 89 56 0 372 460 39 127 4.12e-14 70.9
Msa1147910 AT2G29735.1 37.363 91 54 2 370 458 27 116 4.95e-14 68.9
Msa1147910 AT3G58100.2 37.079 89 56 0 372 460 115 203 7.17e-14 72.0
Msa1147910 AT1G18650.2 39.130 92 55 1 369 460 16 106 1.53e-13 67.8
Msa1147910 AT4G05430.2 34.737 95 61 1 359 452 32 126 2.10e-13 67.4
Msa1147910 AT2G04910.1 39.241 79 48 0 374 452 15 93 5.15e-13 66.2
Msa1147910 AT5G63225.1 35.294 85 54 1 374 458 25 108 6.95e-13 65.5
Msa1147910 AT1G66855.1 30.682 88 61 0 371 458 23 110 9.37e-13 65.1
Msa1147910 AT1G66852.1 35.227 88 56 1 371 458 23 109 9.97e-13 65.1
Msa1147910 AT4G09466.1 34.831 89 57 1 372 460 29 116 1.17e-12 65.1
Msa1147910 AT1G09460.1 38.947 95 55 2 364 458 127 218 3.65e-12 67.8
Msa1147910 AT2G30933.2 41.772 79 45 1 374 452 82 159 5.00e-12 64.3
Msa1147910 AT2G30933.3 41.772 79 45 1 374 452 82 159 5.00e-12 64.3
Msa1147910 AT5G08000.2 39.326 89 53 1 371 459 37 124 8.24e-12 65.1
Msa1147910 AT1G29380.4 39.241 79 47 1 374 452 148 225 1.38e-11 64.7
Msa1147910 AT1G29380.2 39.241 79 47 1 374 452 148 225 1.38e-11 64.7
Msa1147910 AT4G16165.1 34.831 89 58 0 370 458 22 110 1.40e-11 61.6
Msa1147910 AT5G63230.1 32.941 85 56 1 374 458 26 109 2.32e-11 61.2
Msa1147910 AT4G09090.1 33.333 87 57 1 374 460 31 116 3.15e-11 60.8
Msa1147910 AT5G53600.1 31.034 87 58 1 372 458 27 111 5.73e-11 60.1
Msa1147910 AT5G08000.1 39.535 86 51 1 374 459 21 105 5.74e-11 62.0
Msa1147910 AT5G63240.1 33.333 90 58 1 373 460 39 128 6.21e-11 60.5

Find 160 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACCCGGTTAATGTTAATT+TGG 0.198547 7_4:+27509533 Msa1147910:CDS
GGAGGAACTTGTTACTTTAA+TGG 0.203799 7_4:+27510212 Msa1147910:CDS
TATAAGAGGAAATTTAAATT+TGG 0.215220 7_4:+27510808 Msa1147910:three_prime_UTR
GTTTATGACATTGATCTTTC+GGG 0.227881 7_4:+27509936 Msa1147910:CDS
CAACGAGGAGGTAACGGATT+AGG 0.259111 7_4:-27509236 None:intergenic
ATTAGGGTTTGTGGGTAATA+AGG 0.261206 7_4:-27509219 None:intergenic
CACCAAATCTTCCCTTTATA+CGG 0.266249 7_4:-27510011 None:intergenic
GGTTTATGACATTGATCTTT+CGG 0.279871 7_4:+27509935 Msa1147910:CDS
TAATCCAAATTAACATTAAC+CGG 0.304337 7_4:-27509537 None:intergenic
TTTAAGGTTGTTAGGATTTG+TGG 0.304363 7_4:-27509093 None:intergenic
AGCATCATGATTTCAAATAA+TGG 0.307100 7_4:-27511008 None:intergenic
AATGGAGAAACTTGGGTTTC+CGG 0.309222 7_4:+27509659 Msa1147910:CDS
GAGAATAATGAGCCGTATAA+AGG 0.324004 7_4:+27509999 Msa1147910:CDS
ACGGTTAAAGATCCGGGTTC+GGG 0.326064 7_4:+27509585 Msa1147910:CDS
AACGAGGAGGTAACGGATTA+GGG 0.326663 7_4:-27509235 None:intergenic
TATTGTATCCGAACGGGTCT+AGG 0.329429 7_4:+27509913 Msa1147910:CDS
GAGGAACTTGTTACTTTAAT+GGG 0.332834 7_4:+27510213 Msa1147910:CDS
GGTGGGTTGTGTTGTGTGTA+GGG 0.346410 7_4:-27508546 None:intergenic
TAAAGATCCGGGTTCGGGTT+TGG 0.346500 7_4:+27509590 Msa1147910:CDS
TTAATTGACATTTCTATAAG+AGG 0.349394 7_4:+27510794 Msa1147910:three_prime_UTR
CGGATATTTATCGCGGAAAC+GGG 0.349889 7_4:+27509687 Msa1147910:CDS
TTAAGCCCGAATCGGTGTTT+TGG 0.356169 7_4:+27510141 Msa1147910:CDS
GCTATGCGTTTAGTTCCTAT+TGG 0.358375 7_4:+27510171 Msa1147910:CDS
TTGCAACACCTGGATTCATT+TGG 0.358963 7_4:+27511090 Msa1147910:three_prime_UTR
TCCATTGGTCGGAGAGGGTT+TGG 0.366090 7_4:-27509179 None:intergenic
AATGTAAGTTCCTCCTTTGA+AGG 0.366921 7_4:-27510901 None:intergenic
CTTCTTAAACTGTGCCCAAT+AGG 0.366956 7_4:-27510186 None:intergenic
GGGTGGGTTGTGTTGTGTGT+AGG 0.380271 7_4:-27508547 None:intergenic
CTATGCGTTTAGTTCCTATT+GGG 0.381942 7_4:+27510172 Msa1147910:CDS
TGTTGGGACACCGGCTCGAC+CGG 0.385430 7_4:+27509809 Msa1147910:CDS
GCGGAAACGGGTTGGCCTAA+TGG 0.386035 7_4:+27509699 Msa1147910:CDS
TTGGGAGCATGATTGAGATT+TGG 0.386715 7_4:-27509128 None:intergenic
AGTTGACCGTAGCAGATTCC+TGG 0.387463 7_4:-27508985 None:intergenic
TTAAGGTTGTTAGGATTTGT+GGG 0.390167 7_4:-27509092 None:intergenic
GGGAGTAATTTGACTGCGTT+AGG 0.392088 7_4:+27510047 Msa1147910:CDS
AGATGAAGCCACGTGGAGTT+TGG 0.393557 7_4:-27509282 None:intergenic
GCATGCCAAAACACCGATTC+GGG 0.393621 7_4:-27510146 None:intergenic
AGCCGTATAAAGGGAAGATT+TGG 0.394135 7_4:+27510009 Msa1147910:CDS
AACTTGGGTTTCCGGATGTT+CGG 0.396533 7_4:+27509667 Msa1147910:CDS
GTTTAATGAGAATATTAAAC+CGG 0.401130 7_4:+27509863 Msa1147910:CDS
CCAAAATGCCGCTCCGTACC+TGG 0.402042 7_4:-27509888 None:intergenic
ATGCTTGCTCGCAGGGGAAC+CGG 0.402137 7_4:+27510084 Msa1147910:CDS
GGTGGTGATGTTGATCAAAT+TGG 0.406359 7_4:+27509720 Msa1147910:CDS
AACACAACCCACCCATTTCC+AGG 0.406933 7_4:+27508556 Msa1147910:five_prime_UTR
TTCTCTGGCGGAGGAAGTGC+TGG 0.408819 7_4:-27509981 None:intergenic
TACGGTTAAAGATCCGGGTT+CGG 0.410510 7_4:+27509584 Msa1147910:CDS
AGATGGATGGATCCTGGAAA+TGG 0.415173 7_4:-27508568 None:intergenic
TCGGATATTTATCGCGGAAA+CGG 0.419442 7_4:+27509686 Msa1147910:CDS
TAATGTTACGGTTAAAGATC+CGG 0.423841 7_4:+27509578 Msa1147910:CDS
ATGTTTGTGATGAGTTCGTT+TGG 0.429565 7_4:-27509147 None:intergenic
GGAAGATTGAGATGAGACTA+TGG 0.432675 7_4:-27508524 None:intergenic
TACGAATTTATTTGATCAGA+TGG 0.440268 7_4:+27509617 Msa1147910:CDS
AGCATGCCAAAACACCGATT+CGG 0.449585 7_4:-27510147 None:intergenic
AGTTGGTACTTCTTCTGCTA+TGG 0.450725 7_4:+27509365 Msa1147910:CDS
TTGGGTTATTGTATCCGAAC+GGG 0.453332 7_4:+27509907 Msa1147910:CDS
TTACGAAACGCAGCGTTTGA+AGG 0.455167 7_4:-27509411 None:intergenic
TGAATAGAATGGAGAAAAGA+AGG 0.457163 7_4:-27508794 None:intergenic
TGGGTAATAAGGTAGAATGT+TGG 0.457811 7_4:-27509208 None:intergenic
AGAATAATGAGCCGTATAAA+GGG 0.458577 7_4:+27510000 Msa1147910:CDS
TTATACGGCTCATTATTCTC+TGG 0.466583 7_4:-27509996 None:intergenic
CGTTGCCAACGAGGAGGTAA+CGG 0.468252 7_4:-27509242 None:intergenic
TGTTTGTGATGAGTTCGTTT+GGG 0.471998 7_4:-27509146 None:intergenic
ACACCTGGATTCATTTGGAT+TGG 0.472515 7_4:+27511095 Msa1147910:three_prime_UTR
CGAGCCGGTGTCCCAACAAC+CGG 0.475288 7_4:-27509804 None:intergenic
GAAAGTATTTGTAAATAAAG+AGG 0.477496 7_4:-27508398 None:intergenic
AGTAGGAGATGGATGGATCC+TGG 0.478674 7_4:-27508574 None:intergenic
TGGGCACAGTTTAAGAAGAC+TGG 0.479411 7_4:+27510191 Msa1147910:CDS
GAATGTTGGATTTGATCCAT+TGG 0.484368 7_4:-27509194 None:intergenic
CAATTAATGAATGATTCAAA+TGG 0.485467 7_4:-27510778 None:intergenic
TTCCAAGTGTGACACTTTGA+AGG 0.487564 7_4:+27510737 Msa1147910:CDS
ACTATGGTGGTTTGATAAAG+TGG 0.487735 7_4:-27508508 None:intergenic
CTCCTTCAAAGTGTCACACT+TGG 0.488468 7_4:-27510739 None:intergenic
GTTTAGAGAGAGTAATGTTA+CGG 0.488551 7_4:+27509566 Msa1147910:CDS
GTTTACTTCACAGATAGCTC+AGG 0.492016 7_4:+27508949 Msa1147910:intron
GATGGATGGATCCTGGAAAT+GGG 0.492743 7_4:-27508567 None:intergenic
TGATCAACATCACCACCATT+AGG 0.494772 7_4:-27509714 None:intergenic
TATTCATTTATTGCAACACC+TGG 0.497950 7_4:+27511080 Msa1147910:three_prime_UTR
AAGTTATTAAGCCCATGCTT+AGG 0.501182 7_4:+27509448 Msa1147910:CDS
GGGGAACCGGACTTGTGATC+CGG 0.503868 7_4:+27510097 Msa1147910:CDS
TGATATGCTGTTGAATAGAA+TGG 0.507817 7_4:-27508805 None:intergenic
CGAAACGCAGCGTTTGAAGG+TGG 0.507919 7_4:-27509408 None:intergenic
TTTGATCCATTGGTCGGAGA+GGG 0.508250 7_4:-27509184 None:intergenic
AGTGCTGGAAACTCTGAATC+CGG 0.508994 7_4:-27509966 None:intergenic
ATTTGGTGTGTGGCGGTGCG+TGG 0.510143 7_4:+27510026 Msa1147910:CDS
GAGAATATTAAACCGGGTCC+AGG 0.511434 7_4:+27509870 Msa1147910:CDS
GGAGTAATTTGACTGCGTTA+GGG 0.516570 7_4:+27510048 Msa1147910:CDS
GCGATAAATATCCGAACATC+CGG 0.517870 7_4:-27509678 None:intergenic
TTGACATATGCTTGCTCGCA+GGG 0.519727 7_4:+27510077 Msa1147910:CDS
AGGTAACGGATTAGGGTTTG+TGG 0.521382 7_4:-27509228 None:intergenic
AATGTTACGGTTAAAGATCC+GGG 0.527447 7_4:+27509579 Msa1147910:CDS
ATTTGATCAGATGGTGGATG+CGG 0.528077 7_4:+27509626 Msa1147910:CDS
GTTGGGACACCGGCTCGACC+GGG 0.530784 7_4:+27509810 Msa1147910:CDS
GGAATCTGCTACGGTCAACT+AGG 0.534218 7_4:+27508988 Msa1147910:CDS
AGAATCAAAAGAATCAAAGT+TGG 0.535473 7_4:+27509348 Msa1147910:CDS
ATTGTATCCGAACGGGTCTA+GGG 0.535543 7_4:+27509914 Msa1147910:CDS
AGAATCAAACCCGGTCGAGC+CGG 0.535734 7_4:-27509819 None:intergenic
AAAATAAAGTAGGAGATGGA+TGG 0.537278 7_4:-27508581 None:intergenic
TTTGGGTTATTGTATCCGAA+CGG 0.537876 7_4:+27509906 Msa1147910:CDS
GTGGGTTGTGTTGTGTGTAG+GGG 0.537951 7_4:-27508545 None:intergenic
GGTAACGGATTAGGGTTTGT+GGG 0.538137 7_4:-27509227 None:intergenic
TGTTTGATTCTACGCATCGC+AGG 0.542098 7_4:-27509309 None:intergenic
GAAGGTTGAATGTTACTAGA+GGG 0.544294 7_4:-27510883 None:intergenic
TAGTAACATTCAACCTTCAA+AGG 0.544730 7_4:+27510888 Msa1147910:three_prime_UTR
TGCCGCTCCGTACCTGGACC+CGG 0.546698 7_4:-27509882 None:intergenic
TATTTATCGCGGAAACGGGT+TGG 0.547640 7_4:+27509691 Msa1147910:CDS
CTATGGTGGTTTGATAAAGT+GGG 0.549418 7_4:-27508507 None:intergenic
TATTAAACCGGGTCCAGGTA+CGG 0.551795 7_4:+27509875 Msa1147910:CDS
GCTTTCATTTCATCAATGTG+AGG 0.554721 7_4:+27510856 Msa1147910:three_prime_UTR
TCATAAACCCTAGACCCGTT+CGG 0.556211 7_4:-27509921 None:intergenic
ACCAAACCCTCTCCGACCAA+TGG 0.556784 7_4:+27509178 Msa1147910:CDS
GTTGGATTTGATCCATTGGT+CGG 0.560158 7_4:-27509190 None:intergenic
ACTTGTGATCCGGTTCAACC+CGG 0.561213 7_4:+27510107 Msa1147910:CDS
TTTGGTGTGTGGCGGTGCGT+GGG 0.564836 7_4:+27510027 Msa1147910:CDS
AAAACCGGTTGTTGGGACAC+CGG 0.566975 7_4:+27509800 Msa1147910:CDS
GTTTGATTCTACGCATCGCA+GGG 0.568728 7_4:-27509308 None:intergenic
CAAGTGTGACACTTTGAAGG+AGG 0.572437 7_4:+27510740 Msa1147910:exon
AATGTTGGTGATGAGAGAAG+AGG 0.572611 7_4:-27508652 None:intergenic
GGCTCATTATTCTCTGGCGG+AGG 0.572943 7_4:-27509990 None:intergenic
GTTGAACCGGATCACAAGTC+CGG 0.573766 7_4:-27510103 None:intergenic
GTATAAACCAAACCCGAACC+CGG 0.574382 7_4:-27509597 None:intergenic
AAGGTTGAATGTTACTAGAG+GGG 0.577100 7_4:-27510882 None:intergenic
GAATTTATTTGATCAGATGG+TGG 0.583307 7_4:+27509620 Msa1147910:CDS
GGATGGATCCTGGAAATGGG+TGG 0.589643 7_4:-27508564 None:intergenic
TAGCCAATCCAAATGAATCC+AGG 0.590664 7_4:-27511098 None:intergenic
TTAATGAATGATTCAAATGG+AGG 0.591003 7_4:-27510775 None:intergenic
TACGGCTCATTATTCTCTGG+CGG 0.593030 7_4:-27509993 None:intergenic
TGATCTTTCGGGGAAGACAC+CGG 0.594199 7_4:+27509947 Msa1147910:CDS
CTAATCCGTTACCTCCTCGT+TGG 0.602232 7_4:+27509237 Msa1147910:CDS
AGGTTGAATGTTACTAGAGG+GGG 0.602309 7_4:-27510881 None:intergenic
GAGTAATTTGACTGCGTTAG+GGG 0.604286 7_4:+27510049 Msa1147910:CDS
AGATTGAGATGAGACTATGG+TGG 0.605174 7_4:-27508521 None:intergenic
CTTGTGATCCGGTTCAACCC+GGG 0.606763 7_4:+27510108 Msa1147910:CDS
TAATTTGACTGCGTTAGGGG+AGG 0.607558 7_4:+27510052 Msa1147910:CDS
TCACAACCAGGAATCTGCTA+CGG 0.615741 7_4:+27508979 Msa1147910:CDS
ATTTGATCCATTGGTCGGAG+AGG 0.616370 7_4:-27509185 None:intergenic
GTTGACATATGCTTGCTCGC+AGG 0.621005 7_4:+27510076 Msa1147910:CDS
CAAATTAACATTAACCGGGT+CGG 0.622515 7_4:-27509532 None:intergenic
TTTAATGAGAATATTAAACC+GGG 0.624692 7_4:+27509864 Msa1147910:CDS
TGAAGGTTGAATGTTACTAG+AGG 0.624775 7_4:-27510884 None:intergenic
TCAGGCTTCTCATCACAACC+AGG 0.625944 7_4:+27508967 Msa1147910:CDS
GATGGATCCTGGAAATGGGT+GGG 0.633091 7_4:-27508563 None:intergenic
TAAAGGGAAGATTTGGTGTG+TGG 0.635044 7_4:+27510016 Msa1147910:CDS
GAAACGGGTTGGCCTAATGG+TGG 0.635140 7_4:+27509702 Msa1147910:CDS
GCTTGCTACTCAAACTGCAA+AGG 0.636317 7_4:+27510235 Msa1147910:CDS
TAACATTCAACCTTCAAAGG+AGG 0.643417 7_4:+27510891 Msa1147910:three_prime_UTR
AAGCCACGTGGAGTTTGGTG+TGG 0.644687 7_4:-27509277 None:intergenic
TTAACCGGGTCGGAGCTCCA+AGG 0.655245 7_4:-27509522 None:intergenic
TGCGTTTCGTAAAGATATAG+CGG 0.657744 7_4:+27509422 Msa1147910:CDS
TGATTTCGTTGCCAACGAGG+AGG 0.662105 7_4:-27509248 None:intergenic
AATCCAAATTAACATTAACC+GGG 0.666875 7_4:-27509536 None:intergenic
TGACATATGCTTGCTCGCAG+GGG 0.669740 7_4:+27510078 Msa1147910:CDS
GGATGTTCGGATATTTATCG+CGG 0.670356 7_4:+27509680 Msa1147910:CDS
AACCGGGTCCAGGTACGGAG+CGG 0.677668 7_4:+27509880 Msa1147910:CDS
TTTATGACATTGATCTTTCG+GGG 0.677934 7_4:+27509937 Msa1147910:CDS
CATCCACACCAAACTCCACG+TGG 0.678852 7_4:+27509274 Msa1147910:CDS
GCACAGTTTAAGAAGACTGG+AGG 0.681953 7_4:+27510194 Msa1147910:CDS
AGATGATTTCGTTGCCAACG+AGG 0.712852 7_4:-27509251 None:intergenic
AGGGAAGATTTGGTGTGTGG+CGG 0.713466 7_4:+27510019 Msa1147910:CDS
AAACTCGGAAGAATCAAACC+CGG 0.738088 7_4:-27509828 None:intergenic
AGGGACGAGATGAAGCCACG+TGG 0.766058 7_4:-27509289 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAGTTGTTTATTTTTTT+GGG - chr7_4:27508614-27508633 None:intergenic 10.0%
!!! TAATTGACTCTTTTTTTAAT+TGG - chr7_4:27508431-27508450 None:intergenic 15.0%
!!! AAAAGTTGTTTATTTTTTTG+GGG - chr7_4:27508613-27508632 None:intergenic 15.0%
!!! GAAAAAGTTGTTTATTTTTT+TGG - chr7_4:27508615-27508634 None:intergenic 15.0%
!! TAAAAAAGTTATGAAAAAAC+CGG + chr7_4:27509785-27509804 Msa1147910:CDS 15.0%
!! AATAAAAAAATGTACTTACT+TGG - chr7_4:27510263-27510282 None:intergenic 15.0%
!!! TTTTCATTTTGATATAAGAA+AGG + chr7_4:27510382-27510401 Msa1147910:intron 15.0%
!! AAAATAAAAACGTTAAGTAA+TGG - chr7_4:27510677-27510696 None:intergenic 15.0%
!! TATAAGAGGAAATTTAAATT+TGG + chr7_4:27510808-27510827 Msa1147910:three_prime_UTR 15.0%
!!! GAAAGTATTTGTAAATAAAG+AGG - chr7_4:27508401-27508420 None:intergenic 20.0%
!! AAAAGAAAAAAGATTTAGTC+CGG - chr7_4:27509482-27509501 None:intergenic 20.0%
!!! GACTAAATCTTTTTTCTTTT+TGG + chr7_4:27509482-27509501 Msa1147910:CDS 20.0%
!! TAATCCAAATTAACATTAAC+CGG - chr7_4:27509540-27509559 None:intergenic 20.0%
!! AACAAAGCAAATAAAAAACT+CGG - chr7_4:27509846-27509865 None:intergenic 20.0%
!! GTTTAATGAGAATATTAAAC+CGG + chr7_4:27509863-27509882 Msa1147910:CDS 20.0%
!! TTTAATGAGAATATTAAACC+GGG + chr7_4:27509864-27509883 Msa1147910:CDS 20.0%
!!! GTTTTACAACAAAAAATTGT+TGG + chr7_4:27510408-27510427 Msa1147910:intron 20.0%
!! CAATTTAATGGTTATACATT+TGG - chr7_4:27510522-27510541 None:intergenic 20.0%
!! AATCAAGTACTTCAATTTAA+TGG - chr7_4:27510534-27510553 None:intergenic 20.0%
!! GTAGTTAAGTTTAAATTAAC+TGG - chr7_4:27510575-27510594 None:intergenic 20.0%
!!! AGTAATGGAAAAGTATAATA+AGG - chr7_4:27510662-27510681 None:intergenic 20.0%
!! CAATTAATGAATGATTCAAA+TGG - chr7_4:27510781-27510800 None:intergenic 20.0%
!! TTAATTGACATTTCTATAAG+AGG + chr7_4:27510794-27510813 Msa1147910:three_prime_UTR 20.0%
! GATAAAAATAAAGTAGGAGA+TGG - chr7_4:27508588-27508607 None:intergenic 25.0%
!! CTACTTTCTATTTTCAATGT+TGG - chr7_4:27508670-27508689 None:intergenic 25.0%
! CAACATAGCAAAAACTAAAA+TGG + chr7_4:27508758-27508777 Msa1147910:exon 25.0%
!!! TGCTTTTAAGGATTTGATTA+GGG - chr7_4:27509046-27509065 None:intergenic 25.0%
!!! TTGCTTTTAAGGATTTGATT+AGG - chr7_4:27509047-27509066 None:intergenic 25.0%
!!! TTGTGTTTTTTAAGGTTGTT+AGG - chr7_4:27509104-27509123 None:intergenic 25.0%
!!! TTGGATGTTTGTGTTTTTTA+AGG - chr7_4:27509112-27509131 None:intergenic 25.0%
! AGAATCAAAAGAATCAAAGT+TGG + chr7_4:27509348-27509367 Msa1147910:CDS 25.0%
! AATCCAAATTAACATTAACC+GGG - chr7_4:27509539-27509558 None:intergenic 25.0%
! TACGAATTTATTTGATCAGA+TGG + chr7_4:27509617-27509636 Msa1147910:CDS 25.0%
! AATCATAACTCACAATTAGA+GGG - chr7_4:27510314-27510333 None:intergenic 25.0%
! TAATCATAACTCACAATTAG+AGG - chr7_4:27510315-27510334 None:intergenic 25.0%
!!! AAGTACTTGATTTGTTAACA+AGG + chr7_4:27510542-27510561 Msa1147910:intron 25.0%
! TTAATGAATGATTCAAATGG+AGG - chr7_4:27510778-27510797 None:intergenic 25.0%
!! ATGAATGATTTTCATAGCAA+TGG + chr7_4:27510925-27510944 Msa1147910:three_prime_UTR 25.0%
! AGCATCATGATTTCAAATAA+TGG - chr7_4:27511011-27511030 None:intergenic 25.0%
!! ATGCAACGACTATATTTTGA+AGG - chr7_4:27508456-27508475 None:intergenic 30.0%
AAAATAAAGTAGGAGATGGA+TGG - chr7_4:27508584-27508603 None:intergenic 30.0%
GGGGAAGATAAAAATAAAGT+AGG - chr7_4:27508594-27508613 None:intergenic 30.0%
TGAATAGAATGGAGAAAAGA+AGG - chr7_4:27508797-27508816 None:intergenic 30.0%
TGATATGCTGTTGAATAGAA+TGG - chr7_4:27508808-27508827 None:intergenic 30.0%
GTAAGTAACAAAACACTTCT+TGG + chr7_4:27508829-27508848 Msa1147910:intron 30.0%
!! ATTAGGGTTAGTGATTTTGA+GGG - chr7_4:27509030-27509049 None:intergenic 30.0%
!! TTTGATGCGTTTTGCTTTTA+AGG - chr7_4:27509058-27509077 None:intergenic 30.0%
TTAAGGTTGTTAGGATTTGT+GGG - chr7_4:27509095-27509114 None:intergenic 30.0%
! TTTAAGGTTGTTAGGATTTG+TGG - chr7_4:27509096-27509115 None:intergenic 30.0%
!!! ATGTTTATCCGTTTTTTCCT+TGG + chr7_4:27509505-27509524 Msa1147910:CDS 30.0%
GTTTAGAGAGAGTAATGTTA+CGG + chr7_4:27509566-27509585 Msa1147910:CDS 30.0%
TAATGTTACGGTTAAAGATC+CGG + chr7_4:27509578-27509597 Msa1147910:CDS 30.0%
GAATTTATTTGATCAGATGG+TGG + chr7_4:27509620-27509639 Msa1147910:CDS 30.0%
! TATTTTGCAATGGAGAAACT+TGG + chr7_4:27509651-27509670 Msa1147910:CDS 30.0%
! ATTTTGCAATGGAGAAACTT+GGG + chr7_4:27509652-27509671 Msa1147910:CDS 30.0%
TTATGAAAAAACCGGTTGTT+GGG + chr7_4:27509793-27509812 Msa1147910:CDS 30.0%
GGTTTATGACATTGATCTTT+CGG + chr7_4:27509935-27509954 Msa1147910:CDS 30.0%
GTTTATGACATTGATCTTTC+GGG + chr7_4:27509936-27509955 Msa1147910:CDS 30.0%
TTTATGACATTGATCTTTCG+GGG + chr7_4:27509937-27509956 Msa1147910:CDS 30.0%
AGAATAATGAGCCGTATAAA+GGG + chr7_4:27510000-27510019 Msa1147910:CDS 30.0%
!! GAGGAACTTGTTACTTTAAT+GGG + chr7_4:27510213-27510232 Msa1147910:CDS 30.0%
!!! ATCTTTTTTCGAACATGTGT+AGG + chr7_4:27510697-27510716 Msa1147910:intron 30.0%
TAGTAACATTCAACCTTCAA+AGG + chr7_4:27510888-27510907 Msa1147910:three_prime_UTR 30.0%
! ATGATTTTCATAGCAATGGT+AGG + chr7_4:27510929-27510948 Msa1147910:three_prime_UTR 30.0%
! TGATTTTCATAGCAATGGTA+GGG + chr7_4:27510930-27510949 Msa1147910:three_prime_UTR 30.0%
TATTCATTTATTGCAACACC+TGG + chr7_4:27511080-27511099 Msa1147910:three_prime_UTR 30.0%
CTATGGTGGTTTGATAAAGT+GGG - chr7_4:27508510-27508529 None:intergenic 35.0%
ACTATGGTGGTTTGATAAAG+TGG - chr7_4:27508511-27508530 None:intergenic 35.0%
CATTCTCATCTCTTGTGATT+TGG + chr7_4:27508858-27508877 Msa1147910:intron 35.0%
!! GTTAGTGATTTTGAGGGTTT+TGG - chr7_4:27509024-27509043 None:intergenic 35.0%
!! GATTAGGGTTAGTGATTTTG+AGG - chr7_4:27509031-27509050 None:intergenic 35.0%
TGTTTGTGATGAGTTCGTTT+GGG - chr7_4:27509149-27509168 None:intergenic 35.0%
ATGTTTGTGATGAGTTCGTT+TGG - chr7_4:27509150-27509169 None:intergenic 35.0%
GAATGTTGGATTTGATCCAT+TGG - chr7_4:27509197-27509216 None:intergenic 35.0%
TGGGTAATAAGGTAGAATGT+TGG - chr7_4:27509211-27509230 None:intergenic 35.0%
ATTAGGGTTTGTGGGTAATA+AGG - chr7_4:27509222-27509241 None:intergenic 35.0%
TGCGTTTCGTAAAGATATAG+CGG + chr7_4:27509422-27509441 Msa1147910:CDS 35.0%
AAGTTATTAAGCCCATGCTT+AGG + chr7_4:27509448-27509467 Msa1147910:CDS 35.0%
CGGTTTAAAAACCTAAGCAT+GGG - chr7_4:27509462-27509481 None:intergenic 35.0%
! CCATGCTTAGGTTTTTAAAC+CGG + chr7_4:27509460-27509479 Msa1147910:CDS 35.0%
CAAATTAACATTAACCGGGT+CGG - chr7_4:27509535-27509554 None:intergenic 35.0%
AATGTTACGGTTAAAGATCC+GGG + chr7_4:27509579-27509598 Msa1147910:CDS 35.0%
GTTATGAAAAAACCGGTTGT+TGG + chr7_4:27509792-27509811 Msa1147910:CDS 35.0%
! TTTGGGTTATTGTATCCGAA+CGG + chr7_4:27509906-27509925 Msa1147910:CDS 35.0%
TTATACGGCTCATTATTCTC+TGG - chr7_4:27509999-27510018 None:intergenic 35.0%
GAGAATAATGAGCCGTATAA+AGG + chr7_4:27509999-27510018 Msa1147910:CDS 35.0%
CACCAAATCTTCCCTTTATA+CGG - chr7_4:27510014-27510033 None:intergenic 35.0%
!! AAAGTGTTTTAAGCCCGAAT+CGG + chr7_4:27510133-27510152 Msa1147910:CDS 35.0%
! CTATGCGTTTAGTTCCTATT+GGG + chr7_4:27510172-27510191 Msa1147910:CDS 35.0%
!! GGAGGAACTTGTTACTTTAA+TGG + chr7_4:27510212-27510231 Msa1147910:CDS 35.0%
TCTTAGTATTGTTCCCACAA+TGG + chr7_4:27510438-27510457 Msa1147910:intron 35.0%
TGACATTTAACAGCCATTGT+GGG - chr7_4:27510454-27510473 None:intergenic 35.0%
ATGACATTTAACAGCCATTG+TGG - chr7_4:27510455-27510474 None:intergenic 35.0%
TTTCGAACATGTGTAGGTTA+TGG + chr7_4:27510703-27510722 Msa1147910:intron 35.0%
GCTTTCATTTCATCAATGTG+AGG + chr7_4:27510856-27510875 Msa1147910:three_prime_UTR 35.0%
AAGGTTGAATGTTACTAGAG+GGG - chr7_4:27510885-27510904 None:intergenic 35.0%
GAAGGTTGAATGTTACTAGA+GGG - chr7_4:27510886-27510905 None:intergenic 35.0%
TGAAGGTTGAATGTTACTAG+AGG - chr7_4:27510887-27510906 None:intergenic 35.0%
TAACATTCAACCTTCAAAGG+AGG + chr7_4:27510891-27510910 Msa1147910:three_prime_UTR 35.0%
AATGTAAGTTCCTCCTTTGA+AGG - chr7_4:27510904-27510923 None:intergenic 35.0%
AGATTGAGATGAGACTATGG+TGG - chr7_4:27508524-27508543 None:intergenic 40.0%
GGAAGATTGAGATGAGACTA+TGG - chr7_4:27508527-27508546 None:intergenic 40.0%
!! AATGTTGGTGATGAGAGAAG+AGG - chr7_4:27508655-27508674 None:intergenic 40.0%
!! CTTTTAGAAGATGTGCTGTG+TGG - chr7_4:27508727-27508746 None:intergenic 40.0%
GTTTACTTCACAGATAGCTC+AGG + chr7_4:27508949-27508968 Msa1147910:intron 40.0%
!! GTGATTTTGAGGGTTTTGGT+AGG - chr7_4:27509020-27509039 None:intergenic 40.0%
! TTGGGAGCATGATTGAGATT+TGG - chr7_4:27509131-27509150 None:intergenic 40.0%
GTTGGATTTGATCCATTGGT+CGG - chr7_4:27509193-27509212 None:intergenic 40.0%
! AGTTGGTACTTCTTCTGCTA+TGG + chr7_4:27509365-27509384 Msa1147910:CDS 40.0%
CCGGTTTAAAAACCTAAGCA+TGG - chr7_4:27509463-27509482 None:intergenic 40.0%
CGACCCGGTTAATGTTAATT+TGG + chr7_4:27509533-27509552 Msa1147910:CDS 40.0%
!! ATTTGATCAGATGGTGGATG+CGG + chr7_4:27509626-27509645 Msa1147910:CDS 40.0%
!!! GGATGCGGTTTATTTTGCAA+TGG + chr7_4:27509641-27509660 Msa1147910:CDS 40.0%
AATGGAGAAACTTGGGTTTC+CGG + chr7_4:27509659-27509678 Msa1147910:CDS 40.0%
GCGATAAATATCCGAACATC+CGG - chr7_4:27509681-27509700 None:intergenic 40.0%
GGATGTTCGGATATTTATCG+CGG + chr7_4:27509680-27509699 Msa1147910:CDS 40.0%
TCGGATATTTATCGCGGAAA+CGG + chr7_4:27509686-27509705 Msa1147910:CDS 40.0%
TGATCAACATCACCACCATT+AGG - chr7_4:27509717-27509736 None:intergenic 40.0%
! GGTGGTGATGTTGATCAAAT+TGG + chr7_4:27509720-27509739 Msa1147910:CDS 40.0%
AAACTCGGAAGAATCAAACC+CGG - chr7_4:27509831-27509850 None:intergenic 40.0%
TTGGGTTATTGTATCCGAAC+GGG + chr7_4:27509907-27509926 Msa1147910:CDS 40.0%
AGCCGTATAAAGGGAAGATT+TGG + chr7_4:27510009-27510028 Msa1147910:CDS 40.0%
!! TAAAGGGAAGATTTGGTGTG+TGG + chr7_4:27510016-27510035 Msa1147910:CDS 40.0%
GGAGTAATTTGACTGCGTTA+GGG + chr7_4:27510048-27510067 Msa1147910:CDS 40.0%
GAGTAATTTGACTGCGTTAG+GGG + chr7_4:27510049-27510068 Msa1147910:CDS 40.0%
!!! GGCTTAAAACACTTTTTCCC+GGG - chr7_4:27510128-27510147 None:intergenic 40.0%
!!! GGGCTTAAAACACTTTTTCC+CGG - chr7_4:27510129-27510148 None:intergenic 40.0%
! GCTATGCGTTTAGTTCCTAT+TGG + chr7_4:27510171-27510190 Msa1147910:CDS 40.0%
CTTCTTAAACTGTGCCCAAT+AGG - chr7_4:27510189-27510208 None:intergenic 40.0%
TTCCAAGTGTGACACTTTGA+AGG + chr7_4:27510737-27510756 Msa1147910:CDS 40.0%
AGGTTGAATGTTACTAGAGG+GGG - chr7_4:27510884-27510903 None:intergenic 40.0%
TTGCAACACCTGGATTCATT+TGG + chr7_4:27511090-27511109 Msa1147910:three_prime_UTR 40.0%
GATGGATGGATCCTGGAAAT+GGG - chr7_4:27508570-27508589 None:intergenic 45.0%
AGATGGATGGATCCTGGAAA+TGG - chr7_4:27508571-27508590 None:intergenic 45.0%
TCACAACCAGGAATCTGCTA+CGG + chr7_4:27508979-27508998 Msa1147910:CDS 45.0%
TTTGATCCATTGGTCGGAGA+GGG - chr7_4:27509187-27509206 None:intergenic 45.0%
ATTTGATCCATTGGTCGGAG+AGG - chr7_4:27509188-27509207 None:intergenic 45.0%
!! GGTAACGGATTAGGGTTTGT+GGG - chr7_4:27509230-27509249 None:intergenic 45.0%
!! AGGTAACGGATTAGGGTTTG+TGG - chr7_4:27509231-27509250 None:intergenic 45.0%
!! AACGAGGAGGTAACGGATTA+GGG - chr7_4:27509238-27509257 None:intergenic 45.0%
AGATGATTTCGTTGCCAACG+AGG - chr7_4:27509254-27509273 None:intergenic 45.0%
GTTTGATTCTACGCATCGCA+GGG - chr7_4:27509311-27509330 None:intergenic 45.0%
TGTTTGATTCTACGCATCGC+AGG - chr7_4:27509312-27509331 None:intergenic 45.0%
TTACGAAACGCAGCGTTTGA+AGG - chr7_4:27509414-27509433 None:intergenic 45.0%
TCGGAGCTCCAAGGAAAAAA+CGG - chr7_4:27509516-27509535 None:intergenic 45.0%
TACGGTTAAAGATCCGGGTT+CGG + chr7_4:27509584-27509603 Msa1147910:CDS 45.0%
GTATAAACCAAACCCGAACC+CGG - chr7_4:27509600-27509619 None:intergenic 45.0%
AACTTGGGTTTCCGGATGTT+CGG + chr7_4:27509667-27509686 Msa1147910:CDS 45.0%
CGGATATTTATCGCGGAAAC+GGG + chr7_4:27509687-27509706 Msa1147910:CDS 45.0%
TATTTATCGCGGAAACGGGT+TGG + chr7_4:27509691-27509710 Msa1147910:CDS 45.0%
GAGAATATTAAACCGGGTCC+AGG + chr7_4:27509870-27509889 Msa1147910:CDS 45.0%
TATTAAACCGGGTCCAGGTA+CGG + chr7_4:27509875-27509894 Msa1147910:CDS 45.0%
TATTGTATCCGAACGGGTCT+AGG + chr7_4:27509913-27509932 Msa1147910:CDS 45.0%
ATTGTATCCGAACGGGTCTA+GGG + chr7_4:27509914-27509933 Msa1147910:CDS 45.0%
TCATAAACCCTAGACCCGTT+CGG - chr7_4:27509924-27509943 None:intergenic 45.0%
! AGTGCTGGAAACTCTGAATC+CGG - chr7_4:27509969-27509988 None:intergenic 45.0%
TACGGCTCATTATTCTCTGG+CGG - chr7_4:27509996-27510015 None:intergenic 45.0%
GGGAGTAATTTGACTGCGTT+AGG + chr7_4:27510047-27510066 Msa1147910:CDS 45.0%
TAATTTGACTGCGTTAGGGG+AGG + chr7_4:27510052-27510071 Msa1147910:CDS 45.0%
TTGACATATGCTTGCTCGCA+GGG + chr7_4:27510077-27510096 Msa1147910:CDS 45.0%
!! TTAAGCCCGAATCGGTGTTT+TGG + chr7_4:27510141-27510160 Msa1147910:CDS 45.0%
! AGCATGCCAAAACACCGATT+CGG - chr7_4:27510150-27510169 None:intergenic 45.0%
TGGGCACAGTTTAAGAAGAC+TGG + chr7_4:27510191-27510210 Msa1147910:CDS 45.0%
GCACAGTTTAAGAAGACTGG+AGG + chr7_4:27510194-27510213 Msa1147910:CDS 45.0%
! GCTTGCTACTCAAACTGCAA+AGG + chr7_4:27510235-27510254 Msa1147910:CDS 45.0%
! CTCCTTCAAAGTGTCACACT+TGG - chr7_4:27510742-27510761 None:intergenic 45.0%
! CAAGTGTGACACTTTGAAGG+AGG + chr7_4:27510740-27510759 Msa1147910:exon 45.0%
! GTGGGTTGTGTTGTGTGTAG+GGG - chr7_4:27508548-27508567 None:intergenic 50.0%
!! GGTGGGTTGTGTTGTGTGTA+GGG - chr7_4:27508549-27508568 None:intergenic 50.0%
AACACAACCCACCCATTTCC+AGG + chr7_4:27508556-27508575 Msa1147910:five_prime_UTR 50.0%
GATGGATCCTGGAAATGGGT+GGG - chr7_4:27508566-27508585 None:intergenic 50.0%
AGTAGGAGATGGATGGATCC+TGG - chr7_4:27508577-27508596 None:intergenic 50.0%
TCAGGCTTCTCATCACAACC+AGG + chr7_4:27508967-27508986 Msa1147910:CDS 50.0%
AGTTGACCGTAGCAGATTCC+TGG - chr7_4:27508988-27509007 None:intergenic 50.0%
GGAATCTGCTACGGTCAACT+AGG + chr7_4:27508988-27509007 Msa1147910:CDS 50.0%
!! CAACGAGGAGGTAACGGATT+AGG - chr7_4:27509239-27509258 None:intergenic 50.0%
CTAATCCGTTACCTCCTCGT+TGG + chr7_4:27509237-27509256 Msa1147910:CDS 50.0%
TGATTTCGTTGCCAACGAGG+AGG - chr7_4:27509251-27509270 None:intergenic 50.0%
AGATGAAGCCACGTGGAGTT+TGG - chr7_4:27509285-27509304 None:intergenic 50.0%
ACGGTTAAAGATCCGGGTTC+GGG + chr7_4:27509585-27509604 Msa1147910:CDS 50.0%
! TAAAGATCCGGGTTCGGGTT+TGG + chr7_4:27509590-27509609 Msa1147910:CDS 50.0%
AAAACCGGTTGTTGGGACAC+CGG + chr7_4:27509800-27509819 Msa1147910:CDS 50.0%
TGATCTTTCGGGGAAGACAC+CGG + chr7_4:27509947-27509966 Msa1147910:CDS 50.0%
!! AGGGAAGATTTGGTGTGTGG+CGG + chr7_4:27510019-27510038 Msa1147910:CDS 50.0%
GTTGACATATGCTTGCTCGC+AGG + chr7_4:27510076-27510095 Msa1147910:CDS 50.0%
TGACATATGCTTGCTCGCAG+GGG + chr7_4:27510078-27510097 Msa1147910:CDS 50.0%
GTTGAACCGGATCACAAGTC+CGG - chr7_4:27510106-27510125 None:intergenic 50.0%
ACTTGTGATCCGGTTCAACC+CGG + chr7_4:27510107-27510126 Msa1147910:CDS 50.0%
!!! CACTTTTTCCCGGGTTGAAC+CGG - chr7_4:27510119-27510138 None:intergenic 50.0%
!! GCATGCCAAAACACCGATTC+GGG - chr7_4:27510149-27510168 None:intergenic 50.0%
!! GGGTGGGTTGTGTTGTGTGT+AGG - chr7_4:27508550-27508569 None:intergenic 55.0%
GGATGGATCCTGGAAATGGG+TGG - chr7_4:27508567-27508586 None:intergenic 55.0%
ACCAAACCCTCTCCGACCAA+TGG + chr7_4:27509178-27509197 Msa1147910:CDS 55.0%
TCCATTGGTCGGAGAGGGTT+TGG - chr7_4:27509182-27509201 None:intergenic 55.0%
CGTTGCCAACGAGGAGGTAA+CGG - chr7_4:27509245-27509264 None:intergenic 55.0%
CATCCACACCAAACTCCACG+TGG + chr7_4:27509274-27509293 Msa1147910:CDS 55.0%
! AAGCCACGTGGAGTTTGGTG+TGG - chr7_4:27509280-27509299 None:intergenic 55.0%
CGAAACGCAGCGTTTGAAGG+TGG - chr7_4:27509411-27509430 None:intergenic 55.0%
! TTTTCCTTGGAGCTCCGACC+CGG + chr7_4:27509518-27509537 Msa1147910:CDS 55.0%
!! GAAACGGGTTGGCCTAATGG+TGG + chr7_4:27509702-27509721 Msa1147910:CDS 55.0%
AGAATCAAACCCGGTCGAGC+CGG - chr7_4:27509822-27509841 None:intergenic 55.0%
! CAGGTACGGAGCGGCATTTT+GGG + chr7_4:27509889-27509908 Msa1147910:CDS 55.0%
GGCTCATTATTCTCTGGCGG+AGG - chr7_4:27509993-27510012 None:intergenic 55.0%
CTTGTGATCCGGTTCAACCC+GGG + chr7_4:27510108-27510127 Msa1147910:CDS 55.0%
AGGGACGAGATGAAGCCACG+TGG - chr7_4:27509292-27509311 None:intergenic 60.0%
TTAACCGGGTCGGAGCTCCA+AGG - chr7_4:27509525-27509544 None:intergenic 60.0%
!! GCGGAAACGGGTTGGCCTAA+TGG + chr7_4:27509699-27509718 Msa1147910:CDS 60.0%
CCAAAATGCCGCTCCGTACC+TGG - chr7_4:27509891-27509910 None:intergenic 60.0%
! CCAGGTACGGAGCGGCATTT+TGG + chr7_4:27509888-27509907 Msa1147910:CDS 60.0%
! TTCTCTGGCGGAGGAAGTGC+TGG - chr7_4:27509984-27510003 None:intergenic 60.0%
!! ATTTGGTGTGTGGCGGTGCG+TGG + chr7_4:27510026-27510045 Msa1147910:CDS 60.0%
! TTTGGTGTGTGGCGGTGCGT+GGG + chr7_4:27510027-27510046 Msa1147910:CDS 60.0%
ATGCTTGCTCGCAGGGGAAC+CGG + chr7_4:27510084-27510103 Msa1147910:CDS 60.0%
GGGGAACCGGACTTGTGATC+CGG + chr7_4:27510097-27510116 Msa1147910:CDS 60.0%
CGAGCCGGTGTCCCAACAAC+CGG - chr7_4:27509807-27509826 None:intergenic 65.0%
!! TGTTGGGACACCGGCTCGAC+CGG + chr7_4:27509809-27509828 Msa1147910:CDS 65.0%
AACCGGGTCCAGGTACGGAG+CGG + chr7_4:27509880-27509899 Msa1147910:CDS 65.0%
!! GTTGGGACACCGGCTCGACC+GGG + chr7_4:27509810-27509829 Msa1147910:CDS 70.0%
TGCCGCTCCGTACCTGGACC+CGG - chr7_4:27509885-27509904 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 27508393 27511117 27508393 ID=Msa1147910;Name=Msa1147910
chr7_4 mRNA 27508393 27511117 27508393 ID=Msa1147910-mRNA-1;Parent=Msa1147910;Name=Msa1147910-mRNA-1;_AED=0.01;_eAED=0.01;_QI=384|1|1|1|0.5|0.33|3|361|463
chr7_4 exon 27508393 27508828 27508393 ID=Msa1147910-mRNA-1:exon:6735;Parent=Msa1147910-mRNA-1
chr7_4 exon 27508962 27510263 27508962 ID=Msa1147910-mRNA-1:exon:6736;Parent=Msa1147910-mRNA-1
chr7_4 exon 27510719 27511117 27510719 ID=Msa1147910-mRNA-1:exon:6737;Parent=Msa1147910-mRNA-1
chr7_4 five_prime_UTR 27508393 27508776 27508393 ID=Msa1147910-mRNA-1:five_prime_utr;Parent=Msa1147910-mRNA-1
chr7_4 CDS 27508777 27508828 27508777 ID=Msa1147910-mRNA-1:cds;Parent=Msa1147910-mRNA-1
chr7_4 CDS 27508962 27510263 27508962 ID=Msa1147910-mRNA-1:cds;Parent=Msa1147910-mRNA-1
chr7_4 CDS 27510719 27510756 27510719 ID=Msa1147910-mRNA-1:cds;Parent=Msa1147910-mRNA-1
chr7_4 three_prime_UTR 27510757 27511117 27510757 ID=Msa1147910-mRNA-1:three_prime_utr;Parent=Msa1147910-mRNA-1
Gene Sequence

>Msa1147910

ATGGCTTTGTTTCTCTTCCTTCTTTTCTCCATTCTATTCAACAGCATATCAAATAGCTCAGGCTTCTCATCACAACCAGGAATCTGCTACGGTCAACTAGGAAACAACCTACCAAAACCCTCAAAATCACTAACCCTAATCAAATCCTTAAAAGCAAAACGCATCAAAATCTATGACACAAACCCACAAATCCTAACAACCTTAAAAAACACAAACATCCAAATCTCAATCATGCTCCCAAACGAACTCATCACAAACATCTCAACAAACCAAACCCTCTCCGACCAATGGATCAAATCCAACATTCTACCTTATTACCCACAAACCCTAATCCGTTACCTCCTCGTTGGCAACGAAATCATCTCATCCACACCAAACTCCACGTGGCTTCATCTCGTCCCTGCGATGCGTAGAATCAAACACTCATTGAAAAAATTCAGAATCAAAAGAATCAAAGTTGGTACTTCTTCTGCTATGGATGTTCTAGAAACTTCTTTTCCACCTTCAAACGCTGCGTTTCGTAAAGATATAGCGGTTCAAGTTATTAAGCCCATGCTTAGGTTTTTAAACCGGACTAAATCTTTTTTCTTTTTGGATGTTTATCCGTTTTTTCCTTGGAGCTCCGACCCGGTTAATGTTAATTTGGATTATGCTTTGTTTAGAGAGAGTAATGTTACGGTTAAAGATCCGGGTTCGGGTTTGGTTTATACGAATTTATTTGATCAGATGGTGGATGCGGTTTATTTTGCAATGGAGAAACTTGGGTTTCCGGATGTTCGGATATTTATCGCGGAAACGGGTTGGCCTAATGGTGGTGATGTTGATCAAATTGGTGCTAATGTTTTTAATGCTGCTACTTATAATCGTAATTTTGTTAAAAAAGTTATGAAAAAACCGGTTGTTGGGACACCGGCTCGACCGGGTTTGATTCTTCCGAGTTTTTTATTTGCTTTGTTTAATGAGAATATTAAACCGGGTCCAGGTACGGAGCGGCATTTTGGGTTATTGTATCCGAACGGGTCTAGGGTTTATGACATTGATCTTTCGGGGAAGACACCGGATTCAGAGTTTCCAGCACTTCCTCCGCCAGAGAATAATGAGCCGTATAAAGGGAAGATTTGGTGTGTGGCGGTGCGTGGGAGTAATTTGACTGCGTTAGGGGAGGCGTTGACATATGCTTGCTCGCAGGGGAACCGGACTTGTGATCCGGTTCAACCCGGGAAAAAGTGTTTTAAGCCCGAATCGGTGTTTTGGCATGCTAGCTATGCGTTTAGTTCCTATTGGGCACAGTTTAAGAAGACTGGAGGAACTTGTTACTTTAATGGGCTTGCTACTCAAACTGCAAAGGATCCAAGTTATGGATCTTGCAAGTTTCCAAGTGTGACACTTTGA
Protein sequence

>Msa1147910

MALFLFLLFSILFNSISNSSGFSSQPGICYGQLGNNLPKPSKSLTLIKSLKAKRIKIYDTNPQILTTLKNTNIQISIMLPNELITNISTNQTLSDQWIKSNILPYYPQTLIRYLLVGNEIISSTPNSTWLHLVPAMRRIKHSLKKFRIKRIKVGTSSAMDVLETSFPPSNAAFRKDIAVQVIKPMLRFLNRTKSFFFLDVYPFFPWSSDPVNVNLDYALFRESNVTVKDPGSGLVYTNLFDQMVDAVYFAMEKLGFPDVRIFIAETGWPNGGDVDQIGANVFNAATYNRNFVKKVMKKPVVGTPARPGLILPSFLFALFNENIKPGPGTERHFGLLYPNGSRVYDIDLSGKTPDSEFPALPPPENNEPYKGKIWCVAVRGSNLTALGEALTYACSQGNRTCDPVQPGKKCFKPESVFWHASYAFSSYWAQFKKTGGTCYFNGLATQTAKDPSYGSCKFPSVTL*