AlfalfaGEDB | Msa0150580

M. sativa cultivar zhongmu-4 / Msa0150580

KEGG: K01057
GO: GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0006081 GO:0006082 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0031090 GO:0034641 GO:0042126 GO:0042128 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050896 GO:0051156 GO:0051186 GO:0051704 GO:0051707 GO:0051775 GO:0052689 GO:0055086 GO:0071461 GO:0071704 GO:0071941 GO:0072524 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:2001057
PFAM: PF01182.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0150580	KEH40400.1	97.812	320	7	0	1	320	1	320	0.0	643

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0150580	sp\|A2Z3C4\|6PGL4_ORYSI	63.492	252	89	3	69	317	70	321	1.58e-106	317

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0150580	A0A072VQL3	97.812	320	7	0	1	320	1	320	0.0	643

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0009770	Msa0150580	0.803925	2.762637e-49	-8.615850e-47
Msa0029970	Msa0150580	0.803299	3.724524e-49	-8.615850e-47
Msa0071850	Msa0150580	0.808267	3.367928e-50	-8.615850e-47
Msa0071860	Msa0150580	0.813846	2.081463e-51	-8.615850e-47
Msa0104560	Msa0150580	0.807758	4.322107e-50	-8.615850e-47
Msa0125210	Msa0150580	0.806462	8.129134e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0150580	MtrunA17_Chr1g0158811	97.812	320	7	0	1	320	1	320	0.0	643
Msa0150580	MtrunA17_Chr1g0158821	62.229	323	113	6	1	319	1	318	9.07e-134	382
Msa0150580	MtrunA17_Chr3g0127471	63.986	286	92	5	37	317	30	309	1.41e-121	351
Msa0150580	MtrunA17_Chr5g0419391	48.016	252	128	3	69	317	8	259	5.50e-79	241

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0150580	AT5G24400.1	63.306	248	86	3	72	317	81	325	5.50e-106	313
Msa0150580	AT3G49360.1	54.286	245	103	4	78	317	11	251	2.42e-86	260
Msa0150580	AT1G13700.2	50.413	242	116	2	80	317	20	261	1.39e-82	251
Msa0150580	AT1G13700.3	50.413	242	116	2	80	317	20	261	1.39e-82	251
Msa0150580	AT1G13700.1	50.413	242	116	2	80	317	20	261	1.39e-82	251
Msa0150580	AT5G24410.1	52.653	245	107	4	78	317	17	257	1.51e-80	245
Msa0150580	AT5G24420.1	51.837	245	110	4	78	317	11	252	2.12e-78	239

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Find 70 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTTCACCTCTTGAA+GGG	0.515655	1_4:-12198182	Msa0150580:CDS
AAACCATAGATTGGACAAAA+TGG	0.303574	1_4:-12199054	Msa0150580:CDS
AAAGATGCAACATGTCCATC+TGG	0.461834	1_4:+12198414	Msa0150570:three_prime_UTR
AAAGGGTTATAAGAATGTTG+AGG	0.580239	1_4:-12199467	Msa0150580:CDS
AAAGGTTTCACCTCTTGAAG+GGG	0.598919	1_4:-12198181	Msa0150580:CDS
AAAGTAATTCTCTCTGATGG+TGG	0.620404	1_4:+12198324	Msa0150570:three_prime_UTR
AAATAGAGGCATCACTTAAG+TGG	0.496228	1_4:-12199492	Msa0150580:CDS
AAATTTGATCTCATGCTCCT+AGG	0.509138	1_4:-12198444	Msa0150580:CDS
AACAAATTCATCAAAGAAAG+AGG	0.421608	1_4:-12199388	Msa0150580:CDS
AACACTTTATTATGCCTTAG+AGG	0.288583	1_4:+12199538	Msa0150570:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTAGTCAAAGTTGTTGAGA+AGG	+	chr1_4:12198135-12198154	Msa0150570:three_prime_UTR	30.0%
ATTGATGTCTTTAGTGATAG+TGG	+	chr1_4:12198203-12198222	Msa0150570:three_prime_UTR	30.0%
AACACTTTATTATGCCTTAG+AGG	+	chr1_4:12198263-12198282	Msa0150570:three_prime_UTR	30.0%
AAAGGGTTATAAGAATGTTG+AGG	-	chr1_4:12198331-12198350	Msa0150580:CDS	30.0%
GATCATTAATCAAGTACCTA+AGG	-	chr1_4:12198459-12198478	Msa0150580:CDS	30.0%
TGTTAAGAATTACACACCTT+AGG	+	chr1_4:12198478-12198497	Msa0150570:three_prime_UTR	30.0%
AAACCATAGATTGGACAAAA+TGG	-	chr1_4:12198744-12198763	Msa0150580:intron	30.0%
TACTTTCTAAGTGATCCTTT+GGG	+	chr1_4:12198799-12198818	Msa0150570:intron	30.0%
TTACTTTCTAAGTGATCCTT+TGG	+	chr1_4:12198800-12198819	Msa0150570:intron	30.0%
TTCAAGCAAAACAATCAACT+TGG	+	chr1_4:12198873-12198892	Msa0150570:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	12198128	12199692	12198128	ID=Msa0150580;Name=Msa0150580
chr1_4	mRNA	12198128	12199692	12198128	ID=Msa0150580-mRNA-1;Parent=Msa0150580;Name=Msa0150580-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0\|0\|0\|1\|1\|1\|3\|0\|320
chr1_4	exon	12199340	12199692	12199340	ID=Msa0150580-mRNA-1:exon:4987;Parent=Msa0150580-mRNA-1
chr1_4	exon	12198967	12199102	12198967	ID=Msa0150580-mRNA-1:exon:4986;Parent=Msa0150580-mRNA-1
chr1_4	exon	12198128	12198601	12198128	ID=Msa0150580-mRNA-1:exon:4985;Parent=Msa0150580-mRNA-1
chr1_4	CDS	12199340	12199692	12199340	ID=Msa0150580-mRNA-1:cds;Parent=Msa0150580-mRNA-1
chr1_4	CDS	12198967	12199102	12198967	ID=Msa0150580-mRNA-1:cds;Parent=Msa0150580-mRNA-1
chr1_4	CDS	12198128	12198601	12198128	ID=Msa0150580-mRNA-1:cds;Parent=Msa0150580-mRNA-1

Gene Sequence

>Msa0150580

ATGGCCTTCTCAACAACTTTGACTAATTCATGCACTCTCCAAAGTAGCTTATTTTGTGCACAAAAATCAAATCCACTATCACTAAAGACATCAATTTTACCAACCCAAATTGGGAAAAACCTTGGTTTTCAACCTCTAAGGCATAATAAAGTGTTTTCACCAAATAGATGTGTCGGAAAAATAGAGGCATCACTTAAGTGGGAAAAGGGTTATAAGAATGTTGAGGTTTTCAGTAAGGAACATCTTGCTGTTTCATTGGCTTATGATGTTGCTCAACTTTCTAACAAATTCATCAAAGAAAGAGGTTATTTCACTGTTGCTTTGTCTGGTGGATCATTAATCAAGTACCTAAGGAAATTGGTTGAATCTCCCTATGCTGAAACCATAGATTGGACAAAATGGCATGTTTTCTGGGTTGATGAGAGAGTTGTCCCAAAGGATCACTTAGAAAGTAATTATAAGCTTGCCAGTGATGGATTTCTCTCCAAGGTGCCAATTCCTCCTCTCAACGTTTATGCCATTGATGATTCCCTACCACCTGATGGAGCAGCTGATGTTTATGAAACAACCCTAAGACGTTTGGTTAAAAGCAATGTGATATCTACATCAACCAATGAATTACCAAAATTTGATCTCATGCTCCTAGGTATGGGTCCAGATGGACATGTTGCATCTTTATTCCCAGGTCATGCTCTTCTCCAAGAGGATCAGAAATGGGTTACTTTCCTCACTGACTCACCAAAACCACCATCAGAGAGAATTACTTTCACTTTTCCAGTGATCAATGCTTCTTCCAATGTTGCAATGGTGGTGACTGGCGCGGGTAAATCGACCGCAGTTTACACTGCACTTGAGGATGAGAAGAAAACTGTCATGTTGCCTGTTGAAAAGGTTTCACCTCTTGAAGGGGAATTGAAATGGTACTTAGACAAAGGTGCTGCTTCAAAACTGTTTAAGGAGTAA

Protein sequence

>Msa0150580

MAFSTTLTNSCTLQSSLFCAQKSNPLSLKTSILPTQIGKNLGFQPLRHNKVFSPNRCVGKIEASLKWEKGYKNVEVFSKEHLAVSLAYDVAQLSNKFIKERGYFTVALSGGSLIKYLRKLVESPYAETIDWTKWHVFWVDERVVPKDHLESNYKLASDGFLSKVPIPPLNVYAIDDSLPPDGAADVYETTLRRLVKSNVISTSTNELPKFDLMLLGMGPDGHVASLFPGHALLQEDQKWVTFLTDSPKPPSERITFTFPVINASSNVAMVVTGAGKSTAVYTALEDEKKTVMLPVEKVSPLEGELKWYLDKGAASKLFKE*