AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0125210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125210 MtrunA17_Chr1g0186991 86.391 676 90 2 1 675 1 675 0.0 1212
Msa0125210 MtrunA17_Chr1g0186981 53.157 681 298 9 3 675 4 671 0.0 716
Msa0125210 MtrunA17_Chr1g0187001 51.220 656 293 12 22 669 2 638 0.0 650
Msa0125210 MtrunA17_Chr1g0165791 42.753 683 354 13 11 666 5 677 1.17e-170 504
Msa0125210 MtrunA17_Chr1g0186851 31.009 674 400 18 31 669 20 663 3.70e-98 315
Msa0125210 MtrunA17_Chr1g0186841 32.586 669 391 21 31 666 21 662 4.96e-97 313
Msa0125210 MtrunA17_Chr1g0186861 29.674 674 405 19 31 666 20 662 8.61e-91 296
Msa0125210 MtrunA17_Chr1g0187041 29.746 669 417 18 31 669 20 665 1.81e-86 285
Msa0125210 MtrunA17_Chr1g0186911 30.465 581 352 16 109 666 9 560 3.42e-79 262
Msa0125210 MtrunA17_Chr7g0226571 25.941 717 432 26 29 669 20 713 1.39e-52 193
Msa0125210 MtrunA17_Chr3g0116601 26.450 707 412 30 36 665 29 704 1.67e-49 184
Msa0125210 MtrunA17_Chr8g0381301 24.110 730 437 30 23 667 7 704 1.66e-42 164
Msa0125210 MtrunA17_Chr8g0364451 49.462 93 46 1 101 192 49 141 6.98e-18 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125210 AT3G01680.1 24.788 706 432 29 40 666 43 728 6.71e-49 183
Msa0125210 AT3G01670.1 22.252 746 408 24 33 665 134 820 2.17e-35 143
Msa0125210 AT3G01670.2 22.252 746 408 24 33 665 158 844 2.98e-35 143
Msa0125210 AT1G67790.1 21.267 663 446 26 36 646 12 650 4.18e-20 95.5

Find 143 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCTTGTCACATTCTTAT+TGG 0.136620 1_3:+53619885 Msa0125210:CDS
CAATTGCTCTTGTGAATTCT+TGG 0.155564 1_3:-53623318 None:intergenic
CTTGGGAGGTACCATTCTTT+TGG 0.182584 1_3:-53619070 None:intergenic
ATTAATATCCTCAAGCTTAA+AGG 0.201141 1_3:-53619117 None:intergenic
CAACAAAGATTCCATACTTT+TGG 0.213846 1_3:+53623416 Msa0125210:CDS
AATCAAATGCAGCAACTATT+TGG 0.224197 1_3:-53623838 None:intergenic
TCAAGAAATGGGAATGGTTT+TGG 0.249117 1_3:+53622204 Msa0125210:CDS
GGATTCCCATTGTGGATAAA+TGG 0.257755 1_3:+53621661 Msa0125210:CDS
GAAAGTTGCAAAGTGGAAAT+TGG 0.271554 1_3:+53620235 Msa0125210:CDS
TCTGCCTCAACTCAGATTTC+TGG 0.271962 1_3:+53619227 Msa0125210:CDS
GTGCAATCACGTATCTTAAT+AGG 0.285248 1_3:+53619782 Msa0125210:CDS
AACTCTAGCTGCATTCTCTT+TGG 0.285355 1_3:+53619753 Msa0125210:CDS
CAAATACCACCAATATTTAT+AGG 0.291356 1_3:+53620463 Msa0125210:CDS
GCTGCATTCTCTTTGGAGTA+TGG 0.291746 1_3:+53619760 Msa0125210:CDS
GCCACTGATTGGTACATCTT+TGG 0.299017 1_3:-53619039 None:intergenic
TCAGCATCACTTATCCTAAA+AGG 0.301931 1_3:-53622173 None:intergenic
TGAATTCTTGGACCCACTTT+GGG 0.322793 1_3:-53623306 None:intergenic
TCTATACCCATCCAAAAGTA+TGG 0.327507 1_3:-53623427 None:intergenic
GGAGCTGAGATTTCTGTTCT+TGG 0.330206 1_3:-53619088 None:intergenic
CTGAAGATATCTTCAAGAAA+TGG 0.331332 1_3:+53622192 Msa0125210:CDS
TAAGCAGTTGAGGCCTCATT+TGG 0.350383 1_3:+53620213 Msa0125210:CDS
ATGCATATGTATGTGTGTTT+TGG 0.352853 1_3:+53623966 Msa0125210:three_prime_UTR
GGGTTGATCACTGCGAAAAT+AGG 0.358665 1_3:-53622086 None:intergenic
TTAATATCCTCAAGCTTAAA+GGG 0.359624 1_3:-53619116 None:intergenic
CAAAAGTATGGAATCTTTGT+TGG 0.360918 1_3:-53623415 None:intergenic
CCTGAAGAGGATTTCTTGTC+AGG 0.368222 1_3:+53619414 Msa0125210:CDS
CCTCAAGCTTAAAGGGATTA+GGG 0.368926 1_3:-53619109 None:intergenic
GTTTATTCCCCTTGTTGAAT+GGG 0.369451 1_3:+53624021 Msa0125210:three_prime_UTR
AGTTTATTCCCCTTGTTGAA+TGG 0.372623 1_3:+53624020 Msa0125210:three_prime_UTR
TCCTCAAGCTTAAAGGGATT+AGG 0.375897 1_3:-53619110 None:intergenic
CAAGGAAAATTATCTTTGAA+TGG 0.376940 1_3:+53622135 Msa0125210:CDS
GAGCTGAGATTTCTGTTCTT+GGG 0.379012 1_3:-53619087 None:intergenic
GGATTCCTCTTGTTGTGTAT+TGG 0.381172 1_3:+53619998 Msa0125210:CDS
CAAGAATTCACAAGAGCAAT+TGG 0.389274 1_3:+53623319 Msa0125210:CDS
AATGGGTTGAAACTAAATAA+TGG 0.398463 1_3:+53624038 Msa0125210:three_prime_UTR
GTGAATTCTTGGACCCACTT+TGG 0.399763 1_3:-53623307 None:intergenic
AAGGAAAATTATCTTTGAAT+GGG 0.400095 1_3:+53622136 Msa0125210:CDS
TGGGCAGCATGGTCTGCTTT+CGG 0.406610 1_3:+53619931 Msa0125210:CDS
ACACGTCCACAAGTAGGATT+TGG 0.408497 1_3:-53623769 None:intergenic
ATCACCTCAGAGACTTCTCC+TGG 0.410904 1_3:+53619713 Msa0125210:CDS
GATAGATACATATTCATCTA+TGG 0.412586 1_3:+53623274 Msa0125210:CDS
AGGCAACAACCAAGTTAAAC+AGG 0.412902 1_3:+53620483 Msa0125210:CDS
CTATGATTCAGGGCATGAAA+TGG 0.422094 1_3:+53623251 Msa0125210:intron
TGGTTGTTGCCTATAAATAT+TGG 0.423025 1_3:-53620472 None:intergenic
CAGCACTAACCTGTTTAACT+TGG 0.423065 1_3:-53620492 None:intergenic
CCTGACAAGAAATCCTCTTC+AGG 0.423986 1_3:-53619414 None:intergenic
AAAAGTATGGAATCTTTGTT+GGG 0.425612 1_3:-53623414 None:intergenic
GTCTGCTTTCGGTTATGACT+TGG 0.426387 1_3:+53619942 Msa0125210:CDS
TGAAGATATCTTCAAGAAAT+GGG 0.441441 1_3:+53622193 Msa0125210:CDS
TGGGTTGTAGTGCCACTGAT+TGG 0.451280 1_3:-53619050 None:intergenic
TCATCCCATTTATCCACAAT+GGG 0.454076 1_3:-53621666 None:intergenic
ATTCAACAAGGGGAATAAAC+TGG 0.454738 1_3:-53624018 None:intergenic
CTGCATTTGATTCATGTTGA+GGG 0.458098 1_3:+53623849 Msa0125210:exon
TGTTGGAGACAAGCTTGAAA+AGG 0.463060 1_3:-53619199 None:intergenic
GGGTGAGATAAACTTTGTTA+AGG 0.465516 1_3:-53619142 None:intergenic
CTCTTCAGGACAGAGAAGTC+TGG 0.466217 1_3:-53619400 None:intergenic
TTCTCTGAGCTACCAGGGCG+TGG 0.475211 1_3:+53622023 Msa0125210:CDS
ATTTCGAGATTAGACAGCAT+TGG 0.478991 1_3:+53621540 Msa0125210:CDS
GCTACCATTGTTGCATGTAC+TGG 0.479451 1_3:+53620027 Msa0125210:CDS
GATAAACGGTTTCAAGAAAG+AGG 0.480910 1_3:+53621623 Msa0125210:CDS
TCAGCCACAGTTTGATACAT+AGG 0.485178 1_3:-53623601 None:intergenic
CATTCATTATAACACCTTGA+GGG 0.485580 1_3:-53622106 None:intergenic
TTCTTGAGACTTCTGATCAA+AGG 0.489932 1_3:+53620427 Msa0125210:CDS
TATGATTCAGGGCATGAAAT+GGG 0.490425 1_3:+53623252 Msa0125210:intron
ATTTGAAAGACAGCATGAAA+TGG 0.491339 1_3:+53621712 Msa0125210:CDS
TGCACATTCTGCTGTGCCGC+GGG 0.492853 1_3:-53619665 None:intergenic
GAACCTTTCTGAATTGAACT+TGG 0.497414 1_3:-53619849 None:intergenic
ACTTTGCAACTTTCCAAATG+AGG 0.497491 1_3:-53620226 None:intergenic
CCCTAATCCCTTTAAGCTTG+AGG 0.498886 1_3:+53619109 Msa0125210:CDS
AGATAATGAGGAATATGATA+AGG 0.499016 1_3:+53619172 Msa0125210:CDS
GGAATCCATTGCATAGCATC+AGG 0.501216 1_3:-53619982 None:intergenic
TTCCTCATTATCTTTGACAT+GGG 0.501830 1_3:-53619162 None:intergenic
GTTGGAGACAAGCTTGAAAA+GGG 0.511266 1_3:-53619198 None:intergenic
AAACCACAAGAAGTGATAAA+CGG 0.511937 1_3:+53621609 Msa0125210:CDS
AGGAGAAGTCTCTGAGGTGA+TGG 0.514175 1_3:-53619711 None:intergenic
TGTCTCAAACAAGACCCATC+AGG 0.516882 1_3:+53623526 Msa0125210:CDS
TAGCCAAGTTCAATTCAGAA+AGG 0.519066 1_3:+53619846 Msa0125210:CDS
GGAGAATCCACATTGTTGTC+TGG 0.519858 1_3:-53619690 None:intergenic
GATTCCCATTGTGGATAAAT+GGG 0.524001 1_3:+53621662 Msa0125210:CDS
TTCTTTATTATCCCACGCCC+TGG 0.524143 1_3:-53622035 None:intergenic
TTCATCCCATTTATCCACAA+TGG 0.525987 1_3:-53621667 None:intergenic
CACCCATGTCAAAGATAATG+AGG 0.528329 1_3:+53619160 Msa0125210:CDS
GAACACTTCTCTGAGCTACC+AGG 0.528519 1_3:+53622017 Msa0125210:CDS
GAAAGTAGATATCAATATTG+AGG 0.532242 1_3:+53622238 Msa0125210:CDS
AGTTGAGGCAGAGAGGATGT+TGG 0.533320 1_3:-53619216 None:intergenic
ACAAGATCAGTTATATCAGC+AGG 0.534782 1_3:-53619871 None:intergenic
TCCTACTTGTGGACGTGTGA+TGG 0.538034 1_3:+53623774 Msa0125210:CDS
AAACCGTTTATCACTTCTTG+TGG 0.538366 1_3:-53621612 None:intergenic
CTGAGATTTCTGTTCTTGGG+AGG 0.538881 1_3:-53619084 None:intergenic
ATTCCTCATTATCTTTGACA+TGG 0.544802 1_3:-53619163 None:intergenic
GGCACTACAACCCAAAAGAA+TGG 0.549578 1_3:+53619059 Msa0125210:CDS
CAGACTTCTCTGTCCTGAAG+AGG 0.553925 1_3:+53619401 Msa0125210:CDS
AGACTTCTGATCAAAGGCAA+TGG 0.558021 1_3:+53620433 Msa0125210:CDS
GACATTGATTACCACCAACT+AGG 0.560987 1_3:+53623382 Msa0125210:CDS
AGGAAAATTATCTTTGAATG+GGG 0.566944 1_3:+53622137 Msa0125210:CDS
TCATTCATTATAACACCTTG+AGG 0.567246 1_3:-53622107 None:intergenic
TAGTTTCAACCCATTCAACA+AGG 0.567891 1_3:-53624030 None:intergenic
CATAGAAGAACCCATCCTGA+TGG 0.572952 1_3:-53623541 None:intergenic
GCTGCATTTGATTCATGTTG+AGG 0.573125 1_3:+53623848 Msa0125210:exon
TTATAATGAATGAGAATGCA+AGG 0.574786 1_3:+53622117 Msa0125210:CDS
TTGTTGCCTATAAATATTGG+TGG 0.577295 1_3:-53620469 None:intergenic
TACATCTTTGGACAATGTAG+TGG 0.581007 1_3:-53619027 None:intergenic
GTGCACATTCTGCTGTGCCG+CGG 0.581489 1_3:-53619666 None:intergenic
CTTTGCCTGATGCTATGCAA+TGG 0.584464 1_3:+53619977 Msa0125210:CDS
ACTGTCCAATACACAACAAG+AGG 0.585978 1_3:-53620003 None:intergenic
GATGGGTTCTTCTATGTAGA+GGG 0.587378 1_3:+53623548 Msa0125210:CDS
TCAAACAAGACCCATCAGGA+TGG 0.588487 1_3:+53623530 Msa0125210:CDS
ATAGAAGAACCCATCCTGAT+GGG 0.589255 1_3:-53623540 None:intergenic
TGTTGAGGGAGAATTAATCA+AGG 0.589503 1_3:+53623863 Msa0125210:three_prime_UTR
GTTTCAACCCATTCAACAAG+GGG 0.590330 1_3:-53624028 None:intergenic
ATGTGGTGGTTAAGCAGTTG+AGG 0.592783 1_3:+53620203 Msa0125210:CDS
GGATGGGTTCTTCTATGTAG+AGG 0.593679 1_3:+53623547 Msa0125210:CDS
ATATCTTCAAGAAATGGGAA+TGG 0.602647 1_3:+53622198 Msa0125210:CDS
ACTTGTCCAAATCCTACTTG+TGG 0.603163 1_3:+53623763 Msa0125210:CDS
CAAACAAGACCCATCAGGAT+GGG 0.603374 1_3:+53623531 Msa0125210:CDS
ATGGAGGCAACGACCCAAAG+TGG 0.604064 1_3:+53623293 Msa0125210:CDS
AGTTCCAGAAATCTGAGTTG+AGG 0.604866 1_3:-53619231 None:intergenic
ACATTAAACAGTGGGCAGCA+TGG 0.610506 1_3:+53619920 Msa0125210:CDS
ATTCAATCATCAGACACACT+TGG 0.616321 1_3:+53619805 Msa0125210:CDS
TCATTTGGAAAGTTGCAAAG+TGG 0.618816 1_3:+53620228 Msa0125210:CDS
GCATGTACTGGTAACCTCGT+CGG 0.621064 1_3:+53620039 Msa0125210:CDS
TCTCTGAGCTACCAGGGCGT+GGG 0.623157 1_3:+53622024 Msa0125210:CDS
AGTTTCAACCCATTCAACAA+GGG 0.623720 1_3:-53624029 None:intergenic
AAATCTGAGTTGAGGCAGAG+AGG 0.625519 1_3:-53619223 None:intergenic
GTTACAAGACATTAAACAGT+GGG 0.627387 1_3:+53619912 Msa0125210:CDS
TGGAGGCAACGACCCAAAGT+GGG 0.636550 1_3:+53623294 Msa0125210:CDS
TCACCTCAGAGACTTCTCCT+GGG 0.638066 1_3:+53619714 Msa0125210:CDS
TTCGCAGTGATCAACCCTCA+AGG 0.640109 1_3:+53622092 Msa0125210:CDS
TCCAAAGATGTACCAATCAG+TGG 0.640910 1_3:+53619038 Msa0125210:CDS
AGATACATATTCATCTATGG+AGG 0.642307 1_3:+53623277 Msa0125210:CDS
CACCTAGCAGAAATTAAGCA+AGG 0.644336 1_3:+53618937 None:intergenic
TCCATCACACGTCCACAAGT+AGG 0.659029 1_3:-53623775 None:intergenic
GTTACCAGTACATGCAACAA+TGG 0.666126 1_3:-53620031 None:intergenic
CTTCCCAGGAGAAGTCTCTG+AGG 0.675866 1_3:-53619717 None:intergenic
AACTATTTGGATCATCACGA+TGG 0.682485 1_3:-53623825 None:intergenic
TACTTGTGGACGTGTGATGG+AGG 0.687419 1_3:+53623777 Msa0125210:CDS
AACACTTCTCTGAGCTACCA+GGG 0.697242 1_3:+53622018 Msa0125210:CDS
TTTGGACAATGTAGTGGACA+TGG 0.697724 1_3:-53619021 None:intergenic
TGTTACAAGACATTAAACAG+TGG 0.717621 1_3:+53619911 Msa0125210:CDS
TGACAGATGATAACGACCCG+CGG 0.734185 1_3:+53619649 Msa0125210:intron
TGAACCTATGTATCAAACTG+TGG 0.735680 1_3:+53623597 Msa0125210:CDS
GTGCACACCAGACAACAATG+TGG 0.739193 1_3:+53619683 Msa0125210:CDS
GAACTTACGATATACCGACG+AGG 0.806189 1_3:-53620053 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATCTGATTATAAAAAA+AGG + chr1_3:53620173-53620192 Msa0125210:CDS 10.0%
!!! TAATTTTCTCAAATTATTAA+CGG - chr1_3:53621829-53621848 None:intergenic 10.0%
!! TATTAAAATGTATAAGTGAA+AGG - chr1_3:53619284-53619303 None:intergenic 15.0%
!!! TTTTATTAATCTGTATGAAA+TGG + chr1_3:53619567-53619586 Msa0125210:intron 15.0%
!! AGTATATGAAGAAAAAAATT+GGG - chr1_3:53621246-53621265 None:intergenic 15.0%
!! TAGTATATGAAGAAAAAAAT+TGG - chr1_3:53621247-53621266 None:intergenic 15.0%
!! TAAAAGATAACATAGTAAAA+GGG - chr1_3:53621454-53621473 None:intergenic 15.0%
!! AAAAAACTGAATTATGATAT+TGG + chr1_3:53622056-53622075 Msa0125210:CDS 15.0%
!! TTTATTATAGCTTTCATAAT+TGG - chr1_3:53622659-53622678 None:intergenic 15.0%
!! AAATTATCCTTATTAACAGA+TGG - chr1_3:53619511-53619530 None:intergenic 20.0%
!! TATATACATGTAAGTGTAAA+TGG + chr1_3:53620125-53620144 Msa0125210:intron 20.0%
!! TACATAAATAACTACATATG+TGG + chr1_3:53620258-53620277 Msa0125210:intron 20.0%
!!! GTTGACATTCTTTTTATTTT+AGG - chr1_3:53620767-53620786 None:intergenic 20.0%
!! AATCTGAGTACAATTATATT+GGG - chr1_3:53620811-53620830 None:intergenic 20.0%
!! TCTTGTAAATGAATAAAACA+TGG + chr1_3:53620856-53620875 Msa0125210:intron 20.0%
!! CACATGAAAATTAATCTTAA+TGG - chr1_3:53620910-53620929 None:intergenic 20.0%
!! AGTAAATTTCATTAACATGT+CGG - chr1_3:53620964-53620983 None:intergenic 20.0%
!! GAAAATCATATCATTCAAAA+TGG - chr1_3:53621073-53621092 None:intergenic 20.0%
!! GTAAAAGATAACATAGTAAA+AGG - chr1_3:53621455-53621474 None:intergenic 20.0%
!! AACTTTAGATTTATGAAGTA+CGG + chr1_3:53621763-53621782 Msa0125210:intron 20.0%
!! TTTAGTGTAAATATATGTGT+CGG + chr1_3:53621854-53621873 Msa0125210:intron 20.0%
!!! TAAATAATTTCCATGCATTT+TGG + chr1_3:53621948-53621967 Msa0125210:intron 20.0%
!!! TTTTAATAAAAGGTATGTGT+TGG + chr1_3:53621995-53622014 Msa0125210:intron 20.0%
!! AAGGAAAATTATCTTTGAAT+GGG + chr1_3:53622136-53622155 Msa0125210:CDS 20.0%
!! TTAGATTAACAAGAGATTTA+TGG - chr1_3:53622383-53622402 None:intergenic 20.0%
!! AAATGATCTACAATATTAGA+TGG + chr1_3:53622876-53622895 Msa0125210:intron 20.0%
!!! TTTTTGTCTTGTCATTTTTT+TGG - chr1_3:53622943-53622962 None:intergenic 20.0%
!! TTAATTGTTCTTATGATTGA+AGG - chr1_3:53623100-53623119 None:intergenic 20.0%
! TTAATATCCTCAAGCTTAAA+GGG - chr1_3:53619119-53619138 None:intergenic 25.0%
! ATTAATATCCTCAAGCTTAA+AGG - chr1_3:53619120-53619139 None:intergenic 25.0%
! AGATAATGAGGAATATGATA+AGG + chr1_3:53619172-53619191 Msa0125210:CDS 25.0%
! AAAAACTCCATCTGTTAATA+AGG + chr1_3:53619501-53619520 Msa0125210:intron 25.0%
! ATGTATATACGATATAGTGA+CGG - chr1_3:53620114-53620133 None:intergenic 25.0%
!!! AATGGTTCATTTTTTCTTGT+AGG + chr1_3:53620143-53620162 Msa0125210:intron 25.0%
!!! ATGGTTCATTTTTTCTTGTA+GGG + chr1_3:53620144-53620163 Msa0125210:intron 25.0%
!! ATATTGTTTCCAATTTTTGC+AGG + chr1_3:53620343-53620362 Msa0125210:intron 25.0%
!! TATTGTTTCCAATTTTTGCA+GGG + chr1_3:53620344-53620363 Msa0125210:intron 25.0%
! CAAATACCACCAATATTTAT+AGG + chr1_3:53620463-53620482 Msa0125210:CDS 25.0%
! GGGATCACTATAAAAAAAAA+TGG - chr1_3:53620791-53620810 None:intergenic 25.0%
! GAATCTGAGTACAATTATAT+TGG - chr1_3:53620812-53620831 None:intergenic 25.0%
! TAAATTTCATTAACATGTCG+GGG - chr1_3:53620962-53620981 None:intergenic 25.0%
! GTAAATTTCATTAACATGTC+GGG - chr1_3:53620963-53620982 None:intergenic 25.0%
! CAAAATGGAAAACAAAAATC+TGG - chr1_3:53621058-53621077 None:intergenic 25.0%
!! ATGTATTCATGTGTTTTACA+AGG - chr1_3:53621139-53621158 None:intergenic 25.0%
! TTGTTTCATGTATTCTTACT+TGG + chr1_3:53621309-53621328 Msa0125210:intron 25.0%
! TGTATTCTTACTTGGTAAAA+AGG + chr1_3:53621317-53621336 Msa0125210:intron 25.0%
! ATTGTTAATACCAAAATGCA+TGG - chr1_3:53621961-53621980 None:intergenic 25.0%
! TTATAATGAATGAGAATGCA+AGG + chr1_3:53622117-53622136 Msa0125210:CDS 25.0%
! CAAGGAAAATTATCTTTGAA+TGG + chr1_3:53622135-53622154 Msa0125210:CDS 25.0%
! AGGAAAATTATCTTTGAATG+GGG + chr1_3:53622137-53622156 Msa0125210:CDS 25.0%
! TGAAGATATCTTCAAGAAAT+GGG + chr1_3:53622193-53622212 Msa0125210:CDS 25.0%
! GAAAGTAGATATCAATATTG+AGG + chr1_3:53622238-53622257 Msa0125210:CDS 25.0%
! TTAAAAATGTGTCTGTAGTT+TGG - chr1_3:53622269-53622288 None:intergenic 25.0%
! GATATATTAACACCAAACAA+CGG + chr1_3:53622520-53622539 Msa0125210:intron 25.0%
! GTAGATCATTTCTATCTATT+TGG - chr1_3:53622867-53622886 None:intergenic 25.0%
! GTAGAGATATTTAACATGAT+AGG - chr1_3:53623147-53623166 None:intergenic 25.0%
! GATAGATACATATTCATCTA+TGG + chr1_3:53623274-53623293 Msa0125210:CDS 25.0%
! ACATCAAACCATAAAAAATG+TGG + chr1_3:53623354-53623373 Msa0125210:CDS 25.0%
!! AAAAGTATGGAATCTTTGTT+GGG - chr1_3:53623417-53623436 None:intergenic 25.0%
! TGAAAAGTGGAAAAATAATG+TGG + chr1_3:53623627-53623646 Msa0125210:CDS 25.0%
!!! AATGGGTTGAAACTAAATAA+TGG + chr1_3:53624038-53624057 Msa0125210:three_prime_UTR 25.0%
TTCCTCATTATCTTTGACAT+GGG - chr1_3:53619165-53619184 None:intergenic 30.0%
ATTCCTCATTATCTTTGACA+TGG - chr1_3:53619166-53619185 None:intergenic 30.0%
TGATCTTGTCACATTCTTAT+TGG + chr1_3:53619885-53619904 Msa0125210:CDS 30.0%
TGTTACAAGACATTAAACAG+TGG + chr1_3:53619911-53619930 Msa0125210:CDS 30.0%
GTTACAAGACATTAAACAGT+GGG + chr1_3:53619912-53619931 Msa0125210:CDS 30.0%
TGTATATTCCCTGCAAAAAT+TGG - chr1_3:53620355-53620374 None:intergenic 30.0%
TTGTTGCCTATAAATATTGG+TGG - chr1_3:53620472-53620491 None:intergenic 30.0%
TGGTTGTTGCCTATAAATAT+TGG - chr1_3:53620475-53620494 None:intergenic 30.0%
CAATAATAGTTAAGACACTC+AGG - chr1_3:53620519-53620538 None:intergenic 30.0%
GTACTCAGATTCTTTAAGTA+AGG + chr1_3:53620820-53620839 Msa0125210:intron 30.0%
TGTCTAAATGATTACTATGC+AGG + chr1_3:53621170-53621189 Msa0125210:intron 30.0%
GTCTAAATGATTACTATGCA+GGG + chr1_3:53621171-53621190 Msa0125210:intron 30.0%
TCTAAATGATTACTATGCAG+GGG + chr1_3:53621172-53621191 Msa0125210:intron 30.0%
AATTGGGTAATAATCTAGTG+TGG - chr1_3:53621230-53621249 None:intergenic 30.0%
TTAAAGCACAAGAGCAAAAA+TGG - chr1_3:53621354-53621373 None:intergenic 30.0%
AAGATAACATAGTAAAAGGG+CGG - chr1_3:53621451-53621470 None:intergenic 30.0%
!!! AATTTTTTTCTTCCCAACAC+AGG + chr1_3:53621479-53621498 Msa0125210:intron 30.0%
!!! ATTTTTTTCTTCCCAACACA+GGG + chr1_3:53621480-53621499 Msa0125210:intron 30.0%
AAACCACAAGAAGTGATAAA+CGG + chr1_3:53621609-53621628 Msa0125210:CDS 30.0%
! AAGAGGATTTCAAGATTTTG+TGG + chr1_3:53621640-53621659 Msa0125210:CDS 30.0%
ATTTGAAAGACAGCATGAAA+TGG + chr1_3:53621712-53621731 Msa0125210:CDS 30.0%
TCTCAAATTATTAACGGTGT+CGG - chr1_3:53621823-53621842 None:intergenic 30.0%
CATTCATTATAACACCTTGA+GGG - chr1_3:53622109-53622128 None:intergenic 30.0%
TCATTCATTATAACACCTTG+AGG - chr1_3:53622110-53622129 None:intergenic 30.0%
CTGAAGATATCTTCAAGAAA+TGG + chr1_3:53622192-53622211 Msa0125210:CDS 30.0%
ATATCTTCAAGAAATGGGAA+TGG + chr1_3:53622198-53622217 Msa0125210:CDS 30.0%
!! TGAACTCTTGTTGTACTTTT+CGG - chr1_3:53622583-53622602 None:intergenic 30.0%
ATATTAAACTTCTCTCCTTC+TGG - chr1_3:53622707-53622726 None:intergenic 30.0%
TATCTATTTGGTACTTCTTC+CGG - chr1_3:53622855-53622874 None:intergenic 30.0%
TATGATGTTACCTATGATTC+AGG + chr1_3:53623240-53623259 Msa0125210:intron 30.0%
ATGATGTTACCTATGATTCA+GGG + chr1_3:53623241-53623260 Msa0125210:intron 30.0%
AGATACATATTCATCTATGG+AGG + chr1_3:53623277-53623296 Msa0125210:CDS 30.0%
!!! TTGGGTTTTTTTTTCCTAGT+TGG - chr1_3:53623399-53623418 None:intergenic 30.0%
! CAAAAGTATGGAATCTTTGT+TGG - chr1_3:53623418-53623437 None:intergenic 30.0%
! CAACAAAGATTCCATACTTT+TGG + chr1_3:53623416-53623435 Msa0125210:CDS 30.0%
! AAAGATTCCATACTTTTGGA+TGG + chr1_3:53623420-53623439 Msa0125210:CDS 30.0%
! AAGATTCCATACTTTTGGAT+GGG + chr1_3:53623421-53623440 Msa0125210:CDS 30.0%
AATCAAATGCAGCAACTATT+TGG - chr1_3:53623841-53623860 None:intergenic 30.0%
! ATGCATATGTATGTGTGTTT+TGG + chr1_3:53623966-53623985 Msa0125210:three_prime_UTR 30.0%
TACATCTTTGGACAATGTAG+TGG - chr1_3:53619030-53619049 None:intergenic 35.0%
GGGTGAGATAAACTTTGTTA+AGG - chr1_3:53619145-53619164 None:intergenic 35.0%
GATAGACGAAAGAAACAAGA+TGG - chr1_3:53619544-53619563 None:intergenic 35.0%
GTGCAATCACGTATCTTAAT+AGG + chr1_3:53619782-53619801 Msa0125210:CDS 35.0%
ATTCAATCATCAGACACACT+TGG + chr1_3:53619805-53619824 Msa0125210:CDS 35.0%
TAGCCAAGTTCAATTCAGAA+AGG + chr1_3:53619846-53619865 Msa0125210:CDS 35.0%
GAACCTTTCTGAATTGAACT+TGG - chr1_3:53619852-53619871 None:intergenic 35.0%
ACAAGATCAGTTATATCAGC+AGG - chr1_3:53619874-53619893 None:intergenic 35.0%
TAAAAAAAGGCTCTCTGATG+TGG + chr1_3:53620186-53620205 Msa0125210:CDS 35.0%
ACTTTGCAACTTTCCAAATG+AGG - chr1_3:53620229-53620248 None:intergenic 35.0%
TCATTTGGAAAGTTGCAAAG+TGG + chr1_3:53620228-53620247 Msa0125210:CDS 35.0%
GAAAGTTGCAAAGTGGAAAT+TGG + chr1_3:53620235-53620254 Msa0125210:CDS 35.0%
TTCTTGAGACTTCTGATCAA+AGG + chr1_3:53620427-53620446 Msa0125210:CDS 35.0%
GAATAAAACATGGTTGTGAG+TGG + chr1_3:53620866-53620885 Msa0125210:intron 35.0%
TTTAGTCACACCAATATCGA+TGG + chr1_3:53621418-53621437 Msa0125210:intron 35.0%
ATTTCGAGATTAGACAGCAT+TGG + chr1_3:53621540-53621559 Msa0125210:CDS 35.0%
AAACCGTTTATCACTTCTTG+TGG - chr1_3:53621615-53621634 None:intergenic 35.0%
GATAAACGGTTTCAAGAAAG+AGG + chr1_3:53621623-53621642 Msa0125210:CDS 35.0%
GATTCCCATTGTGGATAAAT+GGG + chr1_3:53621662-53621681 Msa0125210:CDS 35.0%
TCATCCCATTTATCCACAAT+GGG - chr1_3:53621669-53621688 None:intergenic 35.0%
TTCATCCCATTTATCCACAA+TGG - chr1_3:53621670-53621689 None:intergenic 35.0%
ATGAAGTACGGATACAAACA+CGG + chr1_3:53621775-53621794 Msa0125210:intron 35.0%
TATGAAGCACAAACACTCAT+TGG - chr1_3:53621912-53621931 None:intergenic 35.0%
! GAATCGATGCTTTTCCTTTT+AGG + chr1_3:53622159-53622178 Msa0125210:CDS 35.0%
TCAGCATCACTTATCCTAAA+AGG - chr1_3:53622176-53622195 None:intergenic 35.0%
! TCAAGAAATGGGAATGGTTT+TGG + chr1_3:53622204-53622223 Msa0125210:CDS 35.0%
CAATACCTGCACATAAGAAT+GGG + chr1_3:53622625-53622644 Msa0125210:intron 35.0%
ATATTCTCCAGTATCTGAGT+CGG + chr1_3:53622723-53622742 Msa0125210:intron 35.0%
TATGGAAGGAAAGAAATGAC+AGG - chr1_3:53622773-53622792 None:intergenic 35.0%
GTTTGCTTATGCATCTGATT+TGG - chr1_3:53622815-53622834 None:intergenic 35.0%
TATGGTAGTTGGTTAGGAAT+TGG - chr1_3:53622915-53622934 None:intergenic 35.0%
!!! GTCATTTTTTTGGCCAGTTA+TGG - chr1_3:53622933-53622952 None:intergenic 35.0%
!! TAGAGGCATTATTACTTCTG+AGG - chr1_3:53623016-53623035 None:intergenic 35.0%
AAGACAAATCTGTTTCGTAG+AGG - chr1_3:53623033-53623052 None:intergenic 35.0%
ACGAAACAGATTTGTCTTAG+AGG + chr1_3:53623035-53623054 Msa0125210:intron 35.0%
CGAAACAGATTTGTCTTAGA+GGG + chr1_3:53623036-53623055 Msa0125210:intron 35.0%
TATGATTCAGGGCATGAAAT+GGG + chr1_3:53623252-53623271 Msa0125210:intron 35.0%
CAATTGCTCTTGTGAATTCT+TGG - chr1_3:53623321-53623340 None:intergenic 35.0%
CAAGAATTCACAAGAGCAAT+TGG + chr1_3:53623319-53623338 Msa0125210:CDS 35.0%
!!! GTCAACGTCCACATTTTTTA+TGG - chr1_3:53623365-53623384 None:intergenic 35.0%
!!! GGTTTTTTTTTCCTAGTTGG+TGG - chr1_3:53623396-53623415 None:intergenic 35.0%
TCTATACCCATCCAAAAGTA+TGG - chr1_3:53623430-53623449 None:intergenic 35.0%
! TACTTTTGGATGGGTATAGA+TGG + chr1_3:53623430-53623449 Msa0125210:CDS 35.0%
!! CATGTTACACTTTTTGGTCA+TGG + chr1_3:53623574-53623593 Msa0125210:CDS 35.0%
TGAACCTATGTATCAAACTG+TGG + chr1_3:53623597-53623616 Msa0125210:CDS 35.0%
!! AAGCTTTGATGAAGCTTTTC+AGG + chr1_3:53623660-53623679 Msa0125210:CDS 35.0%
AACTATTTGGATCATCACGA+TGG - chr1_3:53623828-53623847 None:intergenic 35.0%
CTGCATTTGATTCATGTTGA+GGG + chr1_3:53623849-53623868 Msa0125210:exon 35.0%
TGTTGAGGGAGAATTAATCA+AGG + chr1_3:53623863-53623882 Msa0125210:three_prime_UTR 35.0%
ATTCAACAAGGGGAATAAAC+TGG - chr1_3:53624021-53624040 None:intergenic 35.0%
AGTTTATTCCCCTTGTTGAA+TGG + chr1_3:53624020-53624039 Msa0125210:three_prime_UTR 35.0%
GTTTATTCCCCTTGTTGAAT+GGG + chr1_3:53624021-53624040 Msa0125210:three_prime_UTR 35.0%
AGTTTCAACCCATTCAACAA+GGG - chr1_3:53624032-53624051 None:intergenic 35.0%
TAGTTTCAACCCATTCAACA+AGG - chr1_3:53624033-53624052 None:intergenic 35.0%
!! TTTGGACAATGTAGTGGACA+TGG - chr1_3:53619024-53619043 None:intergenic 40.0%
TCCAAAGATGTACCAATCAG+TGG + chr1_3:53619038-53619057 Msa0125210:CDS 40.0%
!!! TTGGGAGGTACCATTCTTTT+GGG - chr1_3:53619072-53619091 None:intergenic 40.0%
GAGCTGAGATTTCTGTTCTT+GGG - chr1_3:53619090-53619109 None:intergenic 40.0%
CCTCAAGCTTAAAGGGATTA+GGG - chr1_3:53619112-53619131 None:intergenic 40.0%
TCCTCAAGCTTAAAGGGATT+AGG - chr1_3:53619113-53619132 None:intergenic 40.0%
CACCCATGTCAAAGATAATG+AGG + chr1_3:53619160-53619179 Msa0125210:CDS 40.0%
GTTGGAGACAAGCTTGAAAA+GGG - chr1_3:53619201-53619220 None:intergenic 40.0%
TGTTGGAGACAAGCTTGAAA+AGG - chr1_3:53619202-53619221 None:intergenic 40.0%
AGTTCCAGAAATCTGAGTTG+AGG - chr1_3:53619234-53619253 None:intergenic 40.0%
! GTCAGGTTAGTTGTCAATGT+CGG + chr1_3:53619431-53619450 Msa0125210:intron 40.0%
! TATCAATGCTTTTGCTTCCC+AGG - chr1_3:53619734-53619753 None:intergenic 40.0%
AACTCTAGCTGCATTCTCTT+TGG + chr1_3:53619753-53619772 Msa0125210:CDS 40.0%
! GGATTCCTCTTGTTGTGTAT+TGG + chr1_3:53619998-53620017 Msa0125210:CDS 40.0%
ACTGTCCAATACACAACAAG+AGG - chr1_3:53620006-53620025 None:intergenic 40.0%
GTTACCAGTACATGCAACAA+TGG - chr1_3:53620034-53620053 None:intergenic 40.0%
AGACTTCTGATCAAAGGCAA+TGG + chr1_3:53620433-53620452 Msa0125210:CDS 40.0%
AGGCAACAACCAAGTTAAAC+AGG + chr1_3:53620483-53620502 Msa0125210:CDS 40.0%
CAGCACTAACCTGTTTAACT+TGG - chr1_3:53620495-53620514 None:intergenic 40.0%
CAAGTTAAACAGGTTAGTGC+TGG + chr1_3:53620493-53620512 Msa0125210:intron 40.0%
GCACAAGAGCAAAAATGGTT+TGG - chr1_3:53621349-53621368 None:intergenic 40.0%
AGACTTCAATACCCTGTGTT+GGG - chr1_3:53621494-53621513 None:intergenic 40.0%
AAGACTTCAATACCCTGTGT+TGG - chr1_3:53621495-53621514 None:intergenic 40.0%
! GATTTTGTGGATTCCCATTG+TGG + chr1_3:53621653-53621672 Msa0125210:CDS 40.0%
GGATTCCCATTGTGGATAAA+TGG + chr1_3:53621661-53621680 Msa0125210:CDS 40.0%
! TCATTGGATTAGACGTGTTC+CGG - chr1_3:53621896-53621915 None:intergenic 40.0%
! TACTTTTCGGTCGTCTTAGA+TGG - chr1_3:53622570-53622589 None:intergenic 40.0%
CCATTCTTATGTGCAGGTAT+TGG - chr1_3:53622627-53622646 None:intergenic 40.0%
CCAATACCTGCACATAAGAA+TGG + chr1_3:53622624-53622643 Msa0125210:intron 40.0%
CAATACCCATTCTTATGTGC+AGG - chr1_3:53622633-53622652 None:intergenic 40.0%
!! TGTAGCTTTAAACCACCAGA+AGG + chr1_3:53622689-53622708 Msa0125210:intron 40.0%
TTAAACTTCTCTCCTTCTGG+TGG - chr1_3:53622704-53622723 None:intergenic 40.0%
AAATTCTCCGACTCAGATAC+TGG - chr1_3:53622733-53622752 None:intergenic 40.0%
! TTGTTCGTAGGTGTTATGGA+AGG - chr1_3:53622787-53622806 None:intergenic 40.0%
TTGCTTGTTCGTAGGTGTTA+TGG - chr1_3:53622791-53622810 None:intergenic 40.0%
!! GATTTGGTTTGCTTGTTCGT+AGG - chr1_3:53622799-53622818 None:intergenic 40.0%
! ACATCGAGATTTTCCATAGC+CGG + chr1_3:53622833-53622852 Msa0125210:intron 40.0%
TAGTTGGTTAGGAATTGGCT+TGG - chr1_3:53622910-53622929 None:intergenic 40.0%
TCCTAACCAACTACCATAAC+TGG + chr1_3:53622917-53622936 Msa0125210:intron 40.0%
! TTTTGGCCAGTTATGGTAGT+TGG - chr1_3:53622926-53622945 None:intergenic 40.0%
! TGTTTGCTTGGGGTCTTTTT+CGG - chr1_3:53623071-53623090 None:intergenic 40.0%
AAAAAGACCCCAAGCAAACA+CGG + chr1_3:53623071-53623090 Msa0125210:intron 40.0%
CATTTCATGCCCTGAATCAT+AGG - chr1_3:53623253-53623272 None:intergenic 40.0%
CTATGATTCAGGGCATGAAA+TGG + chr1_3:53623251-53623270 Msa0125210:intron 40.0%
TGAATTCTTGGACCCACTTT+GGG - chr1_3:53623309-53623328 None:intergenic 40.0%
! GACATTGATTACCACCAACT+AGG + chr1_3:53623382-53623401 Msa0125210:CDS 40.0%
ATAGAAGAACCCATCCTGAT+GGG - chr1_3:53623543-53623562 None:intergenic 40.0%
! GATGGGTTCTTCTATGTAGA+GGG + chr1_3:53623548-53623567 Msa0125210:CDS 40.0%
! GGGCATCATGTTACACTTTT+TGG + chr1_3:53623568-53623587 Msa0125210:CDS 40.0%
TCAGCCACAGTTTGATACAT+AGG - chr1_3:53623604-53623623 None:intergenic 40.0%
!! CTGTGGCTGATTTTGAAAAG+TGG + chr1_3:53623614-53623633 Msa0125210:CDS 40.0%
ACTTGTCCAAATCCTACTTG+TGG + chr1_3:53623763-53623782 Msa0125210:CDS 40.0%
GCTGCATTTGATTCATGTTG+AGG + chr1_3:53623848-53623867 Msa0125210:exon 40.0%
GTTTCAACCCATTCAACAAG+GGG - chr1_3:53624031-53624050 None:intergenic 40.0%
! GCCACTGATTGGTACATCTT+TGG - chr1_3:53619042-53619061 None:intergenic 45.0%
GGCACTACAACCCAAAAGAA+TGG + chr1_3:53619059-53619078 Msa0125210:CDS 45.0%
!!! CTTGGGAGGTACCATTCTTT+TGG - chr1_3:53619073-53619092 None:intergenic 45.0%
CTGAGATTTCTGTTCTTGGG+AGG - chr1_3:53619087-53619106 None:intergenic 45.0%
GGAGCTGAGATTTCTGTTCT+TGG - chr1_3:53619091-53619110 None:intergenic 45.0%
CCCTAATCCCTTTAAGCTTG+AGG + chr1_3:53619109-53619128 Msa0125210:CDS 45.0%
! AAATCTGAGTTGAGGCAGAG+AGG - chr1_3:53619226-53619245 None:intergenic 45.0%
TCTGCCTCAACTCAGATTTC+TGG + chr1_3:53619227-53619246 Msa0125210:CDS 45.0%
CCTGACAAGAAATCCTCTTC+AGG - chr1_3:53619417-53619436 None:intergenic 45.0%
CCTGAAGAGGATTTCTTGTC+AGG + chr1_3:53619414-53619433 Msa0125210:CDS 45.0%
GGAGAATCCACATTGTTGTC+TGG - chr1_3:53619693-53619712 None:intergenic 45.0%
!! GCTGCATTCTCTTTGGAGTA+TGG + chr1_3:53619760-53619779 Msa0125210:CDS 45.0%
ACATTAAACAGTGGGCAGCA+TGG + chr1_3:53619920-53619939 Msa0125210:CDS 45.0%
GTCTGCTTTCGGTTATGACT+TGG + chr1_3:53619942-53619961 Msa0125210:CDS 45.0%
CTTTGCCTGATGCTATGCAA+TGG + chr1_3:53619977-53619996 Msa0125210:CDS 45.0%
GGAATCCATTGCATAGCATC+AGG - chr1_3:53619985-53620004 None:intergenic 45.0%
GCTACCATTGTTGCATGTAC+TGG + chr1_3:53620027-53620046 Msa0125210:CDS 45.0%
GAACTTACGATATACCGACG+AGG - chr1_3:53620056-53620075 None:intergenic 45.0%
AAAAAGGCTCTCTGATGTGG+TGG + chr1_3:53620189-53620208 Msa0125210:CDS 45.0%
ATGTGGTGGTTAAGCAGTTG+AGG + chr1_3:53620203-53620222 Msa0125210:CDS 45.0%
TAAGCAGTTGAGGCCTCATT+TGG + chr1_3:53620213-53620232 Msa0125210:CDS 45.0%
ATCCAGCATTAGGCATAGTG+TGG + chr1_3:53621198-53621217 Msa0125210:intron 45.0%
CACACCAATATCGATGGTCT+AGG + chr1_3:53621424-53621443 Msa0125210:intron 45.0%
!! TATATGTGTCGGTGTCGTGT+CGG + chr1_3:53621865-53621884 Msa0125210:intron 45.0%
AACACTTCTCTGAGCTACCA+GGG + chr1_3:53622018-53622037 Msa0125210:CDS 45.0%
TTCTTTATTATCCCACGCCC+TGG - chr1_3:53622038-53622057 None:intergenic 45.0%
! GGGTTGATCACTGCGAAAAT+AGG - chr1_3:53622089-53622108 None:intergenic 45.0%
!! CACCAAACAACGGACTATCT+AGG + chr1_3:53622530-53622549 Msa0125210:intron 45.0%
!! CAAACAACGGACTATCTAGG+CGG + chr1_3:53622533-53622552 Msa0125210:intron 45.0%
TTTGGTACTTCTTCCGGCTA+TGG - chr1_3:53622849-53622868 None:intergenic 45.0%
GCCAGTTATGGTAGTTGGTT+AGG - chr1_3:53622921-53622940 None:intergenic 45.0%
!! AGTTGTGTGTTTCTGGCTGT+GGG - chr1_3:53622990-53623009 None:intergenic 45.0%
AAGGTTTCCGTGTTTGCTTG+GGG - chr1_3:53623081-53623100 None:intergenic 45.0%
GAAGGTTTCCGTGTTTGCTT+GGG - chr1_3:53623082-53623101 None:intergenic 45.0%
TGAAGGTTTCCGTGTTTGCT+TGG - chr1_3:53623083-53623102 None:intergenic 45.0%
GTGAATTCTTGGACCCACTT+TGG - chr1_3:53623310-53623329 None:intergenic 45.0%
TGTCTCAAACAAGACCCATC+AGG + chr1_3:53623526-53623545 Msa0125210:CDS 45.0%
TCAAACAAGACCCATCAGGA+TGG + chr1_3:53623530-53623549 Msa0125210:CDS 45.0%
CAAACAAGACCCATCAGGAT+GGG + chr1_3:53623531-53623550 Msa0125210:CDS 45.0%
CATAGAAGAACCCATCCTGA+TGG - chr1_3:53623544-53623563 None:intergenic 45.0%
! GGATGGGTTCTTCTATGTAG+AGG + chr1_3:53623547-53623566 Msa0125210:CDS 45.0%
ACACGTCCACAAGTAGGATT+TGG - chr1_3:53623772-53623791 None:intergenic 45.0%
!!! TTATTTTTGTTTTTAATAAA+AGG + chr1_3:53621985-53622004 Msa0125210:intron 5.0%
!!! TTTTTTTTTTTAAAGAATTT+AGG + chr1_3:53622435-53622454 Msa0125210:intron 5.0%
!!! TTTTTTTTTTAAAGAATTTA+GGG + chr1_3:53622436-53622455 Msa0125210:intron 5.0%
! TGGGTTGTAGTGCCACTGAT+TGG - chr1_3:53619053-53619072 None:intergenic 50.0%
AGTTGAGGCAGAGAGGATGT+TGG - chr1_3:53619219-53619238 None:intergenic 50.0%
CTCTTCAGGACAGAGAAGTC+TGG - chr1_3:53619403-53619422 None:intergenic 50.0%
CAGACTTCTCTGTCCTGAAG+AGG + chr1_3:53619401-53619420 Msa0125210:CDS 50.0%
! TGACAGATGATAACGACCCG+CGG + chr1_3:53619649-53619668 Msa0125210:intron 50.0%
GTGCACACCAGACAACAATG+TGG + chr1_3:53619683-53619702 Msa0125210:CDS 50.0%
!! AGGAGAAGTCTCTGAGGTGA+TGG - chr1_3:53619714-53619733 None:intergenic 50.0%
ATCACCTCAGAGACTTCTCC+TGG + chr1_3:53619713-53619732 Msa0125210:CDS 50.0%
TCACCTCAGAGACTTCTCCT+GGG + chr1_3:53619714-53619733 Msa0125210:CDS 50.0%
! GCATGTACTGGTAACCTCGT+CGG + chr1_3:53620039-53620058 Msa0125210:CDS 50.0%
AGCCACACTATGCCTAATGC+TGG - chr1_3:53621203-53621222 None:intergenic 50.0%
CGGACCTAGACCATCGATAT+TGG - chr1_3:53621431-53621450 None:intergenic 50.0%
GAACACTTCTCTGAGCTACC+AGG + chr1_3:53622017-53622036 Msa0125210:CDS 50.0%
TTCGCAGTGATCAACCCTCA+AGG + chr1_3:53622092-53622111 Msa0125210:CDS 50.0%
CGCCTAGATAGTCCGTTGTT+TGG - chr1_3:53622535-53622554 None:intergenic 50.0%
!! CAGTTGTGTGTTTCTGGCTG+TGG - chr1_3:53622991-53623010 None:intergenic 50.0%
GAGGCTCAGTTGTGTGTTTC+TGG - chr1_3:53622997-53623016 None:intergenic 50.0%
TCCTACTTGTGGACGTGTGA+TGG + chr1_3:53623774-53623793 Msa0125210:CDS 50.0%
TCCATCACACGTCCACAAGT+AGG - chr1_3:53623778-53623797 None:intergenic 50.0%
TACTTGTGGACGTGTGATGG+AGG + chr1_3:53623777-53623796 Msa0125210:CDS 50.0%
CTTCCCAGGAGAAGTCTCTG+AGG - chr1_3:53619720-53619739 None:intergenic 55.0%
TGGGCAGCATGGTCTGCTTT+CGG + chr1_3:53619931-53619950 Msa0125210:CDS 55.0%
!! TGTTTCTGGCTGTGGGCAAC+AGG - chr1_3:53622983-53623002 None:intergenic 55.0%
ATGGAGGCAACGACCCAAAG+TGG + chr1_3:53623293-53623312 Msa0125210:CDS 55.0%
TGGAGGCAACGACCCAAAGT+GGG + chr1_3:53623294-53623313 Msa0125210:CDS 55.0%
TGCACATTCTGCTGTGCCGC+GGG - chr1_3:53619668-53619687 None:intergenic 60.0%
GTGCACATTCTGCTGTGCCG+CGG - chr1_3:53619669-53619688 None:intergenic 60.0%
!! GCAGGGGAGCATCCAGCATT+AGG + chr1_3:53621188-53621207 Msa0125210:intron 60.0%
TTCTCTGAGCTACCAGGGCG+TGG + chr1_3:53622023-53622042 Msa0125210:CDS 60.0%
TCTCTGAGCTACCAGGGCGT+GGG + chr1_3:53622024-53622043 Msa0125210:CDS 60.0%
!! CGGTGTCGTGTCGGTGTCAC+CGG + chr1_3:53621874-53621893 Msa0125210:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 53618952 53624131 53618952 ID=Msa0125210;Name=Msa0125210
chr1_3 mRNA 53618952 53624131 53618952 ID=Msa0125210-mRNA-1;Parent=Msa0125210;Name=Msa0125210-mRNA-1;_AED=0.28;_eAED=0.28;_QI=71|1|1|1|1|1|8|273|675
chr1_3 exon 53618952 53619268 53618952 ID=Msa0125210-mRNA-1:exon:16420;Parent=Msa0125210-mRNA-1
chr1_3 exon 53619382 53619435 53619382 ID=Msa0125210-mRNA-1:exon:16421;Parent=Msa0125210-mRNA-1
chr1_3 exon 53619655 53620067 53619655 ID=Msa0125210-mRNA-1:exon:16422;Parent=Msa0125210-mRNA-1
chr1_3 exon 53620165 53620256 53620165 ID=Msa0125210-mRNA-1:exon:16423;Parent=Msa0125210-mRNA-1
chr1_3 exon 53620365 53620504 53620365 ID=Msa0125210-mRNA-1:exon:16424;Parent=Msa0125210-mRNA-1
chr1_3 exon 53621501 53621733 53621501 ID=Msa0125210-mRNA-1:exon:16425;Parent=Msa0125210-mRNA-1
chr1_3 exon 53622007 53622259 53622007 ID=Msa0125210-mRNA-1:exon:16426;Parent=Msa0125210-mRNA-1
chr1_3 exon 53623262 53624131 53623262 ID=Msa0125210-mRNA-1:exon:16427;Parent=Msa0125210-mRNA-1
chr1_3 five_prime_UTR 53618952 53619022 53618952 ID=Msa0125210-mRNA-1:five_prime_utr;Parent=Msa0125210-mRNA-1
chr1_3 CDS 53619023 53619268 53619023 ID=Msa0125210-mRNA-1:cds;Parent=Msa0125210-mRNA-1
chr1_3 CDS 53619382 53619435 53619382 ID=Msa0125210-mRNA-1:cds;Parent=Msa0125210-mRNA-1
chr1_3 CDS 53619655 53620067 53619655 ID=Msa0125210-mRNA-1:cds;Parent=Msa0125210-mRNA-1
chr1_3 CDS 53620165 53620256 53620165 ID=Msa0125210-mRNA-1:cds;Parent=Msa0125210-mRNA-1
chr1_3 CDS 53620365 53620504 53620365 ID=Msa0125210-mRNA-1:cds;Parent=Msa0125210-mRNA-1
chr1_3 CDS 53621501 53621733 53621501 ID=Msa0125210-mRNA-1:cds;Parent=Msa0125210-mRNA-1
chr1_3 CDS 53622007 53622259 53622007 ID=Msa0125210-mRNA-1:cds;Parent=Msa0125210-mRNA-1
chr1_3 CDS 53623262 53623858 53623262 ID=Msa0125210-mRNA-1:cds;Parent=Msa0125210-mRNA-1
chr1_3 three_prime_UTR 53623859 53624131 53623859 ID=Msa0125210-mRNA-1:three_prime_utr;Parent=Msa0125210-mRNA-1
Gene Sequence

>Msa0125210

ATGTCCACTACATTGTCCAAAGATGTACCAATCAGTGGCACTACAACCCAAAAGAATGGTACCTCCCAAGAACAGAAATCTCAGCTCCCTAATCCCTTTAAGCTTGAGGATATTAATATCCTTAACAAAGTTTATCTCACCCATGTCAAAGATAATGAGGAATATGATAAGGAAACCCTTTTCAAGCTTGTCTCCAACATCCTCTCTGCCTCAACTCAGATTTCTGGAACTAATTCTGCATTTAACACTCAGATTTCTTTCAAACCAGACTTCTCTGTCCTGAAGAGGATTTCTTGTCAGATGATAACGACCCGCGGCACAGCAGAATGTGCACACCAGACAACAATGTGGATTCTCCATCACCTCAGAGACTTCTCCTGGGAAGCAAAAGCATTGATAACTCTAGCTGCATTCTCTTTGGAGTATGGTGCAATCACGTATCTTAATAGGATTCAATCATCAGACACACTTGGAAACTCATTGAAGCAACTTAGCCAAGTTCAATTCAGAAAGGTTCCTGCTGATATAACTGATCTTGTCACATTCTTATTGGATGTGTTACAAGACATTAAACAGTGGGCAGCATGGTCTGCTTTCGGTTATGACTTGGACGATGTTCATTCTTTGCCTGATGCTATGCAATGGATTCCTCTTGTTGTGTATTGGACAGTTGCTACCATTGTTGCATGTACTGGTAACCTCGTCGGTATATCGGAGCATATATTATCTGATTATAAAAAAAGGCTCTCTGATGTGGTGGTTAAGCAGTTGAGGCCTCATTTGGAAAGTTGCAAAGTGGAAATTGGGAATATACACGCAAATGAAGATCGTCTGAAAGAGTCTGATACTATTAAAGATGTTGTTGCTTTCTTGAGACTTCTGATCAAAGGCAATGGAACTGATCAAATACCACCAATATTTATAGGCAACAACCAAGTTAAACAGGGTATTGAAGTCTTCAAGAAGAAGTGTGTGTTGCTGTTCATTTCGAGATTAGACAGCATTGGAGATGAGATTTTGATGTTAAATTCAATCTATAAAAGATTGCAAGACAAACCACAAGAAGTGATAAACGGTTTCAAGAAAGAGGATTTCAAGATTTTGTGGATTCCCATTGTGGATAAATGGGATGAAGACAGCAAGAATGAGTTTAAATATTTGAAAGACAGCATGAAATGGTATGTGTTGGAACACTTCTCTGAGCTACCAGGGCGTGGGATAATAAAGAAAAAACTGAATTATGATATTGGTGACGATCCTATTTTCGCAGTGATCAACCCTCAAGGTGTTATAATGAATGAGAATGCAAGGAAAATTATCTTTGAATGGGGAATCGATGCTTTTCCTTTTAGGATAAGTGATGCTGAAGATATCTTCAAGAAATGGGAATGGTTTTGGAAGTTATTGAAGAAAGTAGATATCAATATTGAGGGCATGAAATGGGATAGATACATATTCATCTATGGAGGCAACGACCCAAAGTGGGTCCAAGAATTCACAAGAGCAATTGGAAGCATTAAAAAACATCAAACCATAAAAAATGTGGACGTTGACATTGATTACCACCAACTAGGAAAAAAAAACCCAACAAAGATTCCATACTTTTGGATGGGTATAGATGGAAGAAAATTACAAAACAAAACATGCAAAGACAGCATAGACTGTGAGATACAAAATGCTGTAAAAAAATTGCTATGTCTCAAACAAGACCCATCAGGATGGGTTCTTCTATGTAGAGGGCATCATGTTACACTTTTTGGTCATGGTGAACCTATGTATCAAACTGTGGCTGATTTTGAAAAGTGGAAAAATAATGTGGTTGAGAAAGAAAGCTTTGATGAAGCTTTTCAGGAATATTATCAAACTAAGCTTACAGAGATGTCTTCTAGTGCTTCATGTGCTATTAATTCTTCAGATGTTCTTGCTACTATAACTTGTCCAAATCCTACTTGTGGACGTGTGATGGAGGTGACTTCTGTTAATTACAAGTGTTGCCATCGTGATGATCCAAATAGTTGCTGCATTTGA
Protein sequence

>Msa0125210

MSTTLSKDVPISGTTTQKNGTSQEQKSQLPNPFKLEDINILNKVYLTHVKDNEEYDKETLFKLVSNILSASTQISGTNSAFNTQISFKPDFSVLKRISCQMITTRGTAECAHQTTMWILHHLRDFSWEAKALITLAAFSLEYGAITYLNRIQSSDTLGNSLKQLSQVQFRKVPADITDLVTFLLDVLQDIKQWAAWSAFGYDLDDVHSLPDAMQWIPLVVYWTVATIVACTGNLVGISEHILSDYKKRLSDVVVKQLRPHLESCKVEIGNIHANEDRLKESDTIKDVVAFLRLLIKGNGTDQIPPIFIGNNQVKQGIEVFKKKCVLLFISRLDSIGDEILMLNSIYKRLQDKPQEVINGFKKEDFKILWIPIVDKWDEDSKNEFKYLKDSMKWYVLEHFSELPGRGIIKKKLNYDIGDDPIFAVINPQGVIMNENARKIIFEWGIDAFPFRISDAEDIFKKWEWFWKLLKKVDINIEGMKWDRYIFIYGGNDPKWVQEFTRAIGSIKKHQTIKNVDVDIDYHQLGKKNPTKIPYFWMGIDGRKLQNKTCKDSIDCEIQNAVKKLLCLKQDPSGWVLLCRGHHVTLFGHGEPMYQTVADFEKWKNNVVEKESFDEAFQEYYQTKLTEMSSSASCAINSSDVLATITCPNPTCGRVMEVTSVNYKCCHRDDPNSCCI*