AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0156720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156720 MtrunA17_Chr1g0168311 78.425 292 8 2 53 289 1 292 2.54e-146 412
Msa0156720 MtrunA17_Chr1g0186151 59.140 279 47 4 76 287 20 298 7.00e-89 268
Msa0156720 MtrunA17_Chr7g0262011 34.516 310 138 7 34 287 55 355 3.06e-46 159
Msa0156720 MtrunA17_Chr1g0190321 27.740 292 140 8 61 289 12 295 9.86e-26 103
Msa0156720 MtrunA17_Chr8g0391511 28.947 266 127 7 80 286 25 287 8.10e-22 92.8
Msa0156720 MtrunA17_Chr5g0434531 27.719 285 140 8 57 287 5 277 9.18e-22 92.4
Msa0156720 MtrunA17_Chr3g0110311 28.571 287 134 9 49 282 2 270 4.28e-21 90.5
Msa0156720 MtrunA17_Chr7g0230381 25.468 267 128 6 58 264 12 267 1.60e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156720 AT1G04520.1 49.669 302 78 7 61 289 7 307 9.42e-78 239
Msa0156720 AT2G33330.1 48.026 304 86 8 55 289 4 304 2.95e-75 232
Msa0156720 AT5G43980.1 32.857 280 116 6 81 289 22 300 4.75e-36 131
Msa0156720 AT3G60720.3 27.481 262 117 5 87 285 29 280 8.08e-22 93.2
Msa0156720 AT3G60720.1 27.519 258 114 5 87 281 29 276 2.62e-21 91.3
Msa0156720 AT2G01660.3 25.965 285 140 7 55 278 2 276 4.91e-20 88.2
Msa0156720 AT2G01660.1 25.965 285 140 7 55 278 2 276 6.47e-20 87.8
Msa0156720 AT5G37660.2 27.304 293 152 5 51 289 4 289 7.09e-20 87.8
Msa0156720 AT5G37660.1 26.199 271 139 5 51 267 4 267 4.01e-19 85.5
Msa0156720 AT3G04370.1 35.507 138 75 2 61 184 8 145 1.60e-18 84.3
Msa0156720 AT3G04370.1 38.889 108 61 2 181 288 216 318 3.93e-17 80.5
Msa0156720 AT3G04370.2 35.507 138 75 2 61 184 8 145 1.76e-18 84.3
Msa0156720 AT3G04370.2 38.889 108 61 2 181 288 215 317 3.93e-17 80.5
Msa0156720 AT1G70690.1 24.742 291 151 7 61 288 9 294 8.98e-15 73.6
Msa0156720 AT3G60720.2 25.221 226 100 4 87 253 29 244 1.14e-14 72.4
Msa0156720 AT2G01660.2 25.333 225 107 6 80 246 20 241 2.07e-14 72.0

Find 72 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTAGTGGATGGAAATTT+TGG 0.063603 1_4:-23335037 Msa0156720:three_prime_UTR
AAATCTGCATACCTGATATT+TGG 0.124670 1_4:+23337197 None:intergenic
CAAAACTTGTTGGACAAAAT+TGG 0.184653 1_4:+23337289 None:intergenic
GCACATGTCCTAAGGCTTTA+AGG 0.191959 1_4:-23337770 Msa0156720:CDS
TAGAATAAATGAAAGAAATA+TGG 0.209647 1_4:+23337588 None:intergenic
CATTGACTTTATAATGCTTT+TGG 0.227216 1_4:-23334949 Msa0156720:three_prime_UTR
GCTGCTAGAGTTCAACTTCT+TGG 0.243055 1_4:-23337253 Msa0156720:CDS
GAATGTGGCAACTCTATTTC+TGG 0.253750 1_4:-23336132 Msa0156720:CDS
TTGTAATTACATAGATATTC+TGG 0.265644 1_4:-23335099 Msa0156720:three_prime_UTR
ACAAACCAGTTATACTGTTT+TGG 0.290553 1_4:+23337368 None:intergenic
CATAAGTGTTTCATTAGTTA+TGG 0.313486 1_4:-23336096 Msa0156720:CDS
TGTCTAGATGGAACTCCATT+AGG 0.322448 1_4:+23336066 None:intergenic
ACATGGCTCAACAAGGGATA+TGG 0.351881 1_4:+23335013 None:intergenic
CCAACTAGTATAAATCAAAA+AGG 0.366973 1_4:+23334810 None:intergenic
GCACAATGTGAAGGTGATAT+TGG 0.371110 1_4:-23336207 Msa0156720:intron
ACTTCTATGATTCTATGTAT+TGG 0.372893 1_4:+23334848 None:intergenic
AATCTGCATACCTGATATTT+GGG 0.379186 1_4:+23337198 None:intergenic
GCTGGTTATACCCAAATATC+AGG 0.389407 1_4:-23337208 Msa0156720:intron
AGTGGCCAAAACAGTATAAC+TGG 0.391004 1_4:-23337373 Msa0156720:CDS
GTTTGTGAGTATATTCCATT+TGG 0.392368 1_4:+23337466 None:intergenic
TATCTACTATATGAAGTTGC+TGG 0.393316 1_4:-23337226 Msa0156720:CDS
TTGGATAGCCTTAAAGCCTT+AGG 0.394887 1_4:+23337762 None:intergenic
TATTATTTGACATTCCTTAG+TGG 0.425284 1_4:-23335050 Msa0156720:three_prime_UTR
AGTTATGGCTATTACCCTAA+TGG 0.430880 1_4:-23336081 Msa0156720:CDS
CAAACACTTTCTACACTCCT+TGG 0.431163 1_4:-23337448 Msa0156720:CDS
TAAATAGAGCTTGACTGGTT+TGG 0.437808 1_4:-23335159 Msa0156720:three_prime_UTR
AGAATAAATGAAAGAAATAT+GGG 0.443988 1_4:+23337589 None:intergenic
GCAATGACAGGGCAAGATCC+AGG 0.447894 1_4:-23335487 Msa0156720:intron
TGTGGTAAATAGAGCTTGAC+TGG 0.450225 1_4:-23335164 Msa0156720:three_prime_UTR
GTCTAGATGGAACTCCATTA+GGG 0.462347 1_4:+23336067 None:intergenic
ATAATACTAGGAGGAATTGC+TGG 0.462780 1_4:-23335451 Msa0156720:CDS
GAATATGAAGAATGTCTAGA+TGG 0.470370 1_4:+23336054 None:intergenic
GTAGAGAAAGACATAAAGCT+AGG 0.475389 1_4:+23334875 None:intergenic
TTTGATGAATGAATGAAAGC+TGG 0.484954 1_4:-23335194 Msa0156720:three_prime_UTR
GTTCTTACCTGAAGAAAATG+AGG 0.485674 1_4:+23336032 None:intergenic
TCTATGATTCTATGTATTGG+AGG 0.486753 1_4:+23334851 None:intergenic
TTATATTCTTGCTATTTGCT+AGG 0.498339 1_4:-23335414 Msa0156720:CDS
AAGTTCTATAAAACCACTAC+TGG 0.500206 1_4:-23337397 Msa0156720:CDS
TATCTCGCGCAGATTATTGA+CGG 0.505401 1_4:-23335286 Msa0156720:intron
CCCAAAATTTCCATCCACTA+AGG 0.505818 1_4:+23335036 None:intergenic
CTGGTTTGTTCCAATGTAGA+GGG 0.509794 1_4:-23337354 Msa0156720:CDS
CTATGATTCTATGTATTGGA+GGG 0.512979 1_4:+23334852 None:intergenic
ATTTGACATTCCTTAGTGGA+TGG 0.522894 1_4:-23335046 Msa0156720:three_prime_UTR
AGCCTTAGGACATGTGCAGA+TGG 0.524367 1_4:+23337776 None:intergenic
GGAAGTGCTAAATGTTCAGA+AGG 0.528755 1_4:-23335078 Msa0156720:three_prime_UTR
AAAACAGCTGCTATAATACT+AGG 0.532912 1_4:-23335463 Msa0156720:CDS
ACCCATCTGCACATGTCCTA+AGG 0.537453 1_4:-23337778 Msa0156720:CDS
CATGTGCAGATGGGTGAGTT+GGG 0.545677 1_4:+23337786 None:intergenic
TATAAAACCACTACTGGTAG+TGG 0.547424 1_4:-23337391 Msa0156720:CDS
ACATGTGCAGATGGGTGAGT+TGG 0.547991 1_4:+23337785 None:intergenic
ACATAGAATCATAGAAGTTG+AGG 0.557207 1_4:-23334843 Msa0156720:three_prime_UTR
ACTGGTTTGTTCCAATGTAG+AGG 0.558068 1_4:-23337355 Msa0156720:CDS
TAGAGAAAGACATAAAGCTA+GGG 0.570373 1_4:+23334876 None:intergenic
GCCTTAGGACATGTGCAGAT+GGG 0.577532 1_4:+23337777 None:intergenic
TAGTGAGATCCCCTCTACAT+TGG 0.590991 1_4:+23337344 None:intergenic
TACACTACATTAGTCTACAA+AGG 0.596329 1_4:-23337514 Msa0156720:CDS
GTCACCCACATGGCTCAACA+AGG 0.596943 1_4:+23335006 None:intergenic
ACTAGGAGGAATTGCTGGAG+TGG 0.599765 1_4:-23335446 Msa0156720:CDS
TATCCCTTGTTGAGCCATGT+GGG 0.600768 1_4:-23335010 Msa0156720:three_prime_UTR
ATATCCCTTGTTGAGCCATG+TGG 0.606775 1_4:-23335011 Msa0156720:three_prime_UTR
GATATTGGTGACTCTGATTG+TGG 0.607730 1_4:-23336192 Msa0156720:CDS
CAATGACAGGGCAAGATCCA+GGG 0.608246 1_4:-23335486 Msa0156720:intron
TATGATTCTATGTATTGGAG+GGG 0.611323 1_4:+23334853 None:intergenic
CAAAGAGCTCAAGTTGAATG+TGG 0.620507 1_4:-23336147 Msa0156720:CDS
ACAGCTGCTATAATACTAGG+AGG 0.630493 1_4:-23335460 Msa0156720:CDS
GCAGAAAATGATTTGTGACA+AGG 0.636991 1_4:-23335260 Msa0156720:three_prime_UTR
AAATAACAGTGTCACCCACA+TGG 0.648812 1_4:+23334996 None:intergenic
TGGTTTGTTCCAATGTAGAG+GGG 0.663909 1_4:-23337353 Msa0156720:CDS
GAAGTGCTAAATGTTCAGAA+GGG 0.686103 1_4:-23335077 Msa0156720:three_prime_UTR
ACTGTGAAACTAGTGAACCA+AGG 0.695689 1_4:+23337431 None:intergenic
TCACCCACATGGCTCAACAA+GGG 0.698767 1_4:+23335007 None:intergenic
AATTTGACAAAGAAACACAA+TGG 0.727029 1_4:-23335391 Msa0156720:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAAAAAAAATTAACGA+CGG - chr1_4:23335705-23335724 Msa0156720:intron 10.0%
!! ATTATAAAAAAAATTAACGA+CGG - chr1_4:23335705-23335724 Msa0156720:intron 10.0%
!! AGAATAAATGAAAGAAATAT+GGG + chr1_4:23335025-23335044 None:intergenic 15.0%
!! TAGAATAAATGAAAGAAATA+TGG + chr1_4:23335026-23335045 None:intergenic 15.0%
!! AATATTGAAATACAATAAGT+AGG - chr1_4:23335669-23335688 Msa0156720:intron 15.0%
!! ATATTGAAATACAATAAGTA+GGG - chr1_4:23335670-23335689 Msa0156720:intron 15.0%
!!! TTTTTATACAACAAACTATA+TGG - chr1_4:23336367-23336386 Msa0156720:intron 15.0%
!!! TAAAATATCAATTTAGTTCA+TGG - chr1_4:23336775-23336794 Msa0156720:intron 15.0%
!! AGAATAAATGAAAGAAATAT+GGG + chr1_4:23335025-23335044 None:intergenic 15.0%
!! TAGAATAAATGAAAGAAATA+TGG + chr1_4:23335026-23335045 None:intergenic 15.0%
!! AATATTGAAATACAATAAGT+AGG - chr1_4:23335669-23335688 Msa0156720:intron 15.0%
!! ATATTGAAATACAATAAGTA+GGG - chr1_4:23335670-23335689 Msa0156720:intron 15.0%
!!! TTTTTATACAACAAACTATA+TGG - chr1_4:23336367-23336386 Msa0156720:intron 15.0%
!!! TAAAATATCAATTTAGTTCA+TGG - chr1_4:23336775-23336794 Msa0156720:intron 15.0%
!! AGAGATTAAAAAAAAGATAG+TGG + chr1_4:23335647-23335666 None:intergenic 20.0%
!!! TTTTATAATTACTGCTAAGA+TGG - chr1_4:23335765-23335784 Msa0156720:intron 20.0%
!! TGATCAAAATTGTACAATTT+CGG + chr1_4:23336826-23336845 None:intergenic 20.0%
!!! ATTTTGAAATATTGATGATG+TGG - chr1_4:23337003-23337022 Msa0156720:intron 20.0%
!! TTGTAATTACATAGATATTC+TGG - chr1_4:23337512-23337531 Msa0156720:CDS 20.0%
!! AAAAACTAGAAAATTGAAGA+GGG + chr1_4:23337642-23337661 None:intergenic 20.0%
!! AGAGATTAAAAAAAAGATAG+TGG + chr1_4:23335647-23335666 None:intergenic 20.0%
!!! TTTTATAATTACTGCTAAGA+TGG - chr1_4:23335765-23335784 Msa0156720:intron 20.0%
!! TGATCAAAATTGTACAATTT+CGG + chr1_4:23336826-23336845 None:intergenic 20.0%
!!! ATTTTGAAATATTGATGATG+TGG - chr1_4:23337003-23337022 Msa0156720:intron 20.0%
!! TTGTAATTACATAGATATTC+TGG - chr1_4:23337512-23337531 Msa0156720:CDS 20.0%
!! AAAAACTAGAAAATTGAAGA+GGG + chr1_4:23337642-23337661 None:intergenic 20.0%
!!! AGCATAAAGGATTTGTTATA+TGG + chr1_4:23334910-23334929 None:intergenic 25.0%
!!! TTGTTTTTTGAGAAGCATAA+AGG + chr1_4:23334923-23334942 None:intergenic 25.0%
!! ATCAAATCATTGCAATTTTG+AGG + chr1_4:23334959-23334978 None:intergenic 25.0%
!! TGAAAGAAATATGGGTTTTA+AGG + chr1_4:23335017-23335036 None:intergenic 25.0%
!! GAAACTTTTATAGATCCAAA+TGG - chr1_4:23335130-23335149 Msa0156720:three_prime_UTR 25.0%
!!! GGTTTTATAGAACTTTGTTT+TGG + chr1_4:23335209-23335228 None:intergenic 25.0%
! TTTAGTGTTTAAACTATCAG+TGG - chr1_4:23335459-23335478 Msa0156720:CDS 25.0%
! TATGGACAACTGATTAAAAT+AGG + chr1_4:23335954-23335973 None:intergenic 25.0%
! ATAAAATCGGTCAAAATAGT+CGG + chr1_4:23336059-23336078 None:intergenic 25.0%
! GCGTATGAAGTATATAAAAT+CGG + chr1_4:23336072-23336091 None:intergenic 25.0%
!!! ACAAGTTTTGTACAAATGTT+AGG - chr1_4:23336230-23336249 Msa0156720:intron 25.0%
!! CTATATGGCATTTTATGTTT+TGG - chr1_4:23336382-23336401 Msa0156720:intron 25.0%
! CATAAGTGTTTCATTAGTTA+TGG - chr1_4:23336515-23336534 Msa0156720:intron 25.0%
!!! AAAATAAGTGTCGATTTGTA+TGG - chr1_4:23336653-23336672 Msa0156720:intron 25.0%
! TAACCAACATTTGTCATAAA+GGG + chr1_4:23336711-23336730 None:intergenic 25.0%
! TTAACCAACATTTGTCATAA+AGG + chr1_4:23336712-23336731 None:intergenic 25.0%
! TGACATTAAGTTTGTAATCT+CGG - chr1_4:23336881-23336900 Msa0156720:intron 25.0%
!! TTGATAATAATTTCAAACCG+AGG - chr1_4:23336944-23336963 Msa0156720:intron 25.0%
! TGATAATAATTTCAAACCGA+GGG - chr1_4:23336945-23336964 Msa0156720:intron 25.0%
!! CTTAACCATTGGAAATTTTA+GGG + chr1_4:23337058-23337077 None:intergenic 25.0%
!!! TTATATTCTTGCTATTTGCT+AGG - chr1_4:23337197-23337216 Msa0156720:intron 25.0%
! AATTTGACAAAGAAACACAA+TGG - chr1_4:23337220-23337239 Msa0156720:CDS 25.0%
! TATTATTTGACATTCCTTAG+TGG - chr1_4:23337561-23337580 Msa0156720:CDS 25.0%
! GAAAAACTAGAAAATTGAAG+AGG + chr1_4:23337643-23337662 None:intergenic 25.0%
!!! CATTGACTTTATAATGCTTT+TGG - chr1_4:23337662-23337681 Msa0156720:CDS 25.0%
! ACTTCTATGATTCTATGTAT+TGG + chr1_4:23337766-23337785 None:intergenic 25.0%
! CCAACTAGTATAAATCAAAA+AGG + chr1_4:23337804-23337823 None:intergenic 25.0%
!!! CCTTTTTGATTTATACTAGT+TGG - chr1_4:23337801-23337820 Msa0156720:CDS 25.0%
!!! AGCATAAAGGATTTGTTATA+TGG + chr1_4:23334910-23334929 None:intergenic 25.0%
!!! TTGTTTTTTGAGAAGCATAA+AGG + chr1_4:23334923-23334942 None:intergenic 25.0%
!! ATCAAATCATTGCAATTTTG+AGG + chr1_4:23334959-23334978 None:intergenic 25.0%
!! TGAAAGAAATATGGGTTTTA+AGG + chr1_4:23335017-23335036 None:intergenic 25.0%
!! GAAACTTTTATAGATCCAAA+TGG - chr1_4:23335130-23335149 Msa0156720:three_prime_UTR 25.0%
!!! GGTTTTATAGAACTTTGTTT+TGG + chr1_4:23335209-23335228 None:intergenic 25.0%
! TTTAGTGTTTAAACTATCAG+TGG - chr1_4:23335459-23335478 Msa0156720:CDS 25.0%
! TATGGACAACTGATTAAAAT+AGG + chr1_4:23335954-23335973 None:intergenic 25.0%
! ATAAAATCGGTCAAAATAGT+CGG + chr1_4:23336059-23336078 None:intergenic 25.0%
! GCGTATGAAGTATATAAAAT+CGG + chr1_4:23336072-23336091 None:intergenic 25.0%
!!! ACAAGTTTTGTACAAATGTT+AGG - chr1_4:23336230-23336249 Msa0156720:intron 25.0%
!! CTATATGGCATTTTATGTTT+TGG - chr1_4:23336382-23336401 Msa0156720:intron 25.0%
! CATAAGTGTTTCATTAGTTA+TGG - chr1_4:23336515-23336534 Msa0156720:intron 25.0%
!!! AAAATAAGTGTCGATTTGTA+TGG - chr1_4:23336653-23336672 Msa0156720:intron 25.0%
! TAACCAACATTTGTCATAAA+GGG + chr1_4:23336711-23336730 None:intergenic 25.0%
! TTAACCAACATTTGTCATAA+AGG + chr1_4:23336712-23336731 None:intergenic 25.0%
! TGACATTAAGTTTGTAATCT+CGG - chr1_4:23336881-23336900 Msa0156720:intron 25.0%
!! TTGATAATAATTTCAAACCG+AGG - chr1_4:23336944-23336963 Msa0156720:intron 25.0%
! TGATAATAATTTCAAACCGA+GGG - chr1_4:23336945-23336964 Msa0156720:intron 25.0%
!! CTTAACCATTGGAAATTTTA+GGG + chr1_4:23337058-23337077 None:intergenic 25.0%
!!! TTATATTCTTGCTATTTGCT+AGG - chr1_4:23337197-23337216 Msa0156720:intron 25.0%
! AATTTGACAAAGAAACACAA+TGG - chr1_4:23337220-23337239 Msa0156720:CDS 25.0%
! TATTATTTGACATTCCTTAG+TGG - chr1_4:23337561-23337580 Msa0156720:CDS 25.0%
! GAAAAACTAGAAAATTGAAG+AGG + chr1_4:23337643-23337662 None:intergenic 25.0%
!!! CATTGACTTTATAATGCTTT+TGG - chr1_4:23337662-23337681 Msa0156720:CDS 25.0%
! ACTTCTATGATTCTATGTAT+TGG + chr1_4:23337766-23337785 None:intergenic 25.0%
! CCAACTAGTATAAATCAAAA+AGG + chr1_4:23337804-23337823 None:intergenic 25.0%
!!! CCTTTTTGATTTATACTAGT+TGG - chr1_4:23337801-23337820 Msa0156720:CDS 25.0%
! AGGTGGGATTAAATTTTCTT+TGG + chr1_4:23334871-23334890 None:intergenic 30.0%
!!! TTTGTTATATGGTTTTGTGG+TGG + chr1_4:23334899-23334918 None:intergenic 30.0%
!!! GGATTTGTTATATGGTTTTG+TGG + chr1_4:23334902-23334921 None:intergenic 30.0%
!!! TTGCTTTTTGTGTAGTAGTA+AGG + chr1_4:23334983-23335002 None:intergenic 30.0%
! AAGATTTTGCAAAATGAGGT+GGG + chr1_4:23335069-23335088 None:intergenic 30.0%
! GAAGAAGATTTTGCAAAATG+AGG + chr1_4:23335073-23335092 None:intergenic 30.0%
! TACACTACATTAGTCTACAA+AGG - chr1_4:23335097-23335116 Msa0156720:three_prime_UTR 30.0%
GTTTGTGAGTATATTCCATT+TGG + chr1_4:23335148-23335167 None:intergenic 30.0%
AAGTTCTATAAAACCACTAC+TGG - chr1_4:23335214-23335233 Msa0156720:three_prime_UTR 30.0%
! ACAAACCAGTTATACTGTTT+TGG + chr1_4:23335246-23335265 None:intergenic 30.0%
!! CAAAACTTGTTGGACAAAAT+TGG + chr1_4:23335325-23335344 None:intergenic 30.0%
! ATTTTGTCCAACAAGTTTTG+TGG - chr1_4:23335325-23335344 Msa0156720:intron 30.0%
TATCTACTATATGAAGTTGC+TGG - chr1_4:23335385-23335404 Msa0156720:intron 30.0%
AATCTGCATACCTGATATTT+GGG + chr1_4:23335416-23335435 None:intergenic 30.0%
AAATCTGCATACCTGATATT+TGG + chr1_4:23335417-23335436 None:intergenic 30.0%
! TTTTAATCAGTTGTCCATAG+TGG - chr1_4:23335955-23335974 Msa0156720:intron 30.0%
TAAAATCGGTCAAAATAGTC+GGG + chr1_4:23336058-23336077 None:intergenic 30.0%
TAGAACGACTCAATTGAAAA+GGG - chr1_4:23336107-23336126 Msa0156720:CDS 30.0%
ACATAGTTCAAATTCTTACG+AGG + chr1_4:23336170-23336189 None:intergenic 30.0%
GAATATGAAGAATGTCTAGA+TGG + chr1_4:23336560-23336579 None:intergenic 30.0%
! TCATATTCCTCATTTTCTTC+AGG - chr1_4:23336572-23336591 Msa0156720:intron 30.0%
!!! CAAATTTTGGTTCAATCTGT+AGG + chr1_4:23336617-23336636 None:intergenic 30.0%
CTACAGATTGAACCAAAATT+TGG - chr1_4:23336615-23336634 Msa0156720:intron 30.0%
!! ATTGAACCAAAATTTGGTGT+TGG - chr1_4:23336621-23336640 Msa0156720:intron 30.0%
!! TTGAACCAAAATTTGGTGTT+GGG - chr1_4:23336622-23336641 Msa0156720:intron 30.0%
TACAATTTCGGTGATCAATT+TGG + chr1_4:23336814-23336833 None:intergenic 30.0%
! GAGATGAATTTGAAACTAAG+TGG - chr1_4:23336903-23336922 Msa0156720:intron 30.0%
! CCTTAACCATTGGAAATTTT+AGG + chr1_4:23337059-23337078 None:intergenic 30.0%
CCTAAAATTTCCAATGGTTA+AGG - chr1_4:23337056-23337075 Msa0156720:intron 30.0%
ATTTCCAATGGTTAAGGAAA+AGG - chr1_4:23337062-23337081 Msa0156720:intron 30.0%
!! TATTGATTTGATGCAATGAC+AGG - chr1_4:23337112-23337131 Msa0156720:intron 30.0%
!! ATTGATTTGATGCAATGACA+GGG - chr1_4:23337113-23337132 Msa0156720:intron 30.0%
AAAACAGCTGCTATAATACT+AGG - chr1_4:23337148-23337167 Msa0156720:intron 30.0%
TTTGATGAATGAATGAAAGC+TGG - chr1_4:23337417-23337436 Msa0156720:CDS 30.0%
! ATGAAAGCTGGAAATTTTTG+TGG - chr1_4:23337429-23337448 Msa0156720:CDS 30.0%
!!! TTGTTTTTGAGCAATGCTTT+TGG - chr1_4:23337692-23337711 Msa0156720:intron 30.0%
TAGAGAAAGACATAAAGCTA+GGG + chr1_4:23337738-23337757 None:intergenic 30.0%
TATGATTCTATGTATTGGAG+GGG + chr1_4:23337761-23337780 None:intergenic 30.0%
CTATGATTCTATGTATTGGA+GGG + chr1_4:23337762-23337781 None:intergenic 30.0%
TCTATGATTCTATGTATTGG+AGG + chr1_4:23337763-23337782 None:intergenic 30.0%
ACATAGAATCATAGAAGTTG+AGG - chr1_4:23337768-23337787 Msa0156720:CDS 30.0%
! AGGTGGGATTAAATTTTCTT+TGG + chr1_4:23334871-23334890 None:intergenic 30.0%
!!! TTTGTTATATGGTTTTGTGG+TGG + chr1_4:23334899-23334918 None:intergenic 30.0%
!!! GGATTTGTTATATGGTTTTG+TGG + chr1_4:23334902-23334921 None:intergenic 30.0%
!!! TTGCTTTTTGTGTAGTAGTA+AGG + chr1_4:23334983-23335002 None:intergenic 30.0%
! AAGATTTTGCAAAATGAGGT+GGG + chr1_4:23335069-23335088 None:intergenic 30.0%
! GAAGAAGATTTTGCAAAATG+AGG + chr1_4:23335073-23335092 None:intergenic 30.0%
! TACACTACATTAGTCTACAA+AGG - chr1_4:23335097-23335116 Msa0156720:three_prime_UTR 30.0%
GTTTGTGAGTATATTCCATT+TGG + chr1_4:23335148-23335167 None:intergenic 30.0%
AAGTTCTATAAAACCACTAC+TGG - chr1_4:23335214-23335233 Msa0156720:three_prime_UTR 30.0%
! ACAAACCAGTTATACTGTTT+TGG + chr1_4:23335246-23335265 None:intergenic 30.0%
!! CAAAACTTGTTGGACAAAAT+TGG + chr1_4:23335325-23335344 None:intergenic 30.0%
! ATTTTGTCCAACAAGTTTTG+TGG - chr1_4:23335325-23335344 Msa0156720:intron 30.0%
TATCTACTATATGAAGTTGC+TGG - chr1_4:23335385-23335404 Msa0156720:intron 30.0%
AATCTGCATACCTGATATTT+GGG + chr1_4:23335416-23335435 None:intergenic 30.0%
AAATCTGCATACCTGATATT+TGG + chr1_4:23335417-23335436 None:intergenic 30.0%
! TTTTAATCAGTTGTCCATAG+TGG - chr1_4:23335955-23335974 Msa0156720:intron 30.0%
TAAAATCGGTCAAAATAGTC+GGG + chr1_4:23336058-23336077 None:intergenic 30.0%
TAGAACGACTCAATTGAAAA+GGG - chr1_4:23336107-23336126 Msa0156720:CDS 30.0%
ACATAGTTCAAATTCTTACG+AGG + chr1_4:23336170-23336189 None:intergenic 30.0%
GAATATGAAGAATGTCTAGA+TGG + chr1_4:23336560-23336579 None:intergenic 30.0%
! TCATATTCCTCATTTTCTTC+AGG - chr1_4:23336572-23336591 Msa0156720:intron 30.0%
!!! CAAATTTTGGTTCAATCTGT+AGG + chr1_4:23336617-23336636 None:intergenic 30.0%
CTACAGATTGAACCAAAATT+TGG - chr1_4:23336615-23336634 Msa0156720:intron 30.0%
!! ATTGAACCAAAATTTGGTGT+TGG - chr1_4:23336621-23336640 Msa0156720:intron 30.0%
!! TTGAACCAAAATTTGGTGTT+GGG - chr1_4:23336622-23336641 Msa0156720:intron 30.0%
TACAATTTCGGTGATCAATT+TGG + chr1_4:23336814-23336833 None:intergenic 30.0%
! GAGATGAATTTGAAACTAAG+TGG - chr1_4:23336903-23336922 Msa0156720:intron 30.0%
! CCTTAACCATTGGAAATTTT+AGG + chr1_4:23337059-23337078 None:intergenic 30.0%
CCTAAAATTTCCAATGGTTA+AGG - chr1_4:23337056-23337075 Msa0156720:intron 30.0%
ATTTCCAATGGTTAAGGAAA+AGG - chr1_4:23337062-23337081 Msa0156720:intron 30.0%
!! TATTGATTTGATGCAATGAC+AGG - chr1_4:23337112-23337131 Msa0156720:intron 30.0%
!! ATTGATTTGATGCAATGACA+GGG - chr1_4:23337113-23337132 Msa0156720:intron 30.0%
AAAACAGCTGCTATAATACT+AGG - chr1_4:23337148-23337167 Msa0156720:intron 30.0%
TTTGATGAATGAATGAAAGC+TGG - chr1_4:23337417-23337436 Msa0156720:CDS 30.0%
! ATGAAAGCTGGAAATTTTTG+TGG - chr1_4:23337429-23337448 Msa0156720:CDS 30.0%
!!! TTGTTTTTGAGCAATGCTTT+TGG - chr1_4:23337692-23337711 Msa0156720:intron 30.0%
TAGAGAAAGACATAAAGCTA+GGG + chr1_4:23337738-23337757 None:intergenic 30.0%
TATGATTCTATGTATTGGAG+GGG + chr1_4:23337761-23337780 None:intergenic 30.0%
CTATGATTCTATGTATTGGA+GGG + chr1_4:23337762-23337781 None:intergenic 30.0%
TCTATGATTCTATGTATTGG+AGG + chr1_4:23337763-23337782 None:intergenic 30.0%
ACATAGAATCATAGAAGTTG+AGG - chr1_4:23337768-23337787 Msa0156720:CDS 30.0%
! GAAGATTTTGCAAAATGAGG+TGG + chr1_4:23335070-23335089 None:intergenic 35.0%
TATAAAACCACTACTGGTAG+TGG - chr1_4:23335220-23335239 Msa0156720:three_prime_UTR 35.0%
! AGTTTTGCCACAAAACTTGT+TGG + chr1_4:23335335-23335354 None:intergenic 35.0%
AGTGTTTAAACTATCAGTGG+TGG - chr1_4:23335462-23335481 Msa0156720:CDS 35.0%
! AAACTATCAGTGGTGGAAAA+TGG - chr1_4:23335469-23335488 Msa0156720:CDS 35.0%
! AACTATCAGTGGTGGAAAAT+GGG - chr1_4:23335470-23335489 Msa0156720:CDS 35.0%
ATATCAACATGTTAGTGTCG+TGG + chr1_4:23335536-23335555 None:intergenic 35.0%
CTCTTAGTAGTAGACGTTAA+TGG + chr1_4:23335897-23335916 None:intergenic 35.0%
ATATAGACCTCCTTCATAAG+TGG + chr1_4:23335982-23336001 None:intergenic 35.0%
! GTCTCTGAAGAATGTGTAAT+CGG - chr1_4:23336022-23336041 Msa0156720:intron 35.0%
GAATGTGTAATCGGTCAATT+TGG - chr1_4:23336031-23336050 Msa0156720:intron 35.0%
GTAGAACGACTCAATTGAAA+AGG - chr1_4:23336106-23336125 Msa0156720:CDS 35.0%
AGAACGACTCAATTGAAAAG+GGG - chr1_4:23336108-23336127 Msa0156720:CDS 35.0%
CTTACAAGATCGAACTCTTT+CGG - chr1_4:23336199-23336218 Msa0156720:intron 35.0%
AGATGCTCTATAAGACTTGT+GGG - chr1_4:23336258-23336277 Msa0156720:intron 35.0%
ATAACAAATGTTGCTGGAAG+TGG - chr1_4:23336281-23336300 Msa0156720:intron 35.0%
CTTTATCAGCGATGGAAAAT+GGG - chr1_4:23336327-23336346 Msa0156720:intron 35.0%
TTTATCAGCGATGGAAAATG+GGG - chr1_4:23336328-23336347 Msa0156720:intron 35.0%
!!! TATGTTTTGGCACAATGTGA+AGG - chr1_4:23336395-23336414 Msa0156720:intron 35.0%
AGTTATGGCTATTACCCTAA+TGG - chr1_4:23336530-23336549 Msa0156720:intron 35.0%
GTTCTTACCTGAAGAAAATG+AGG + chr1_4:23336582-23336601 None:intergenic 35.0%
! CTTTTCCCAACACCAAATTT+TGG + chr1_4:23336630-23336649 None:intergenic 35.0%
!! CAAAATTTGGTGTTGGGAAA+AGG - chr1_4:23336628-23336647 Msa0156720:intron 35.0%
AACATTTGTCATAAAGGGCA+AGG + chr1_4:23336706-23336725 None:intergenic 35.0%
TTGCCCTTTATGACAAATGT+TGG - chr1_4:23336705-23336724 Msa0156720:intron 35.0%
! TTTTGATCAAATTCGTCGCT+TGG - chr1_4:23336837-23336856 Msa0156720:intron 35.0%
!! GTCGCTTGGTTGATATTTTT+AGG - chr1_4:23336851-23336870 Msa0156720:intron 35.0%
! TTTTAATCGAGTTTGTCCCT+CGG + chr1_4:23336964-23336983 None:intergenic 35.0%
! AGTACCTTTTCCTTAACCAT+TGG + chr1_4:23337069-23337088 None:intergenic 35.0%
ATAATACTAGGAGGAATTGC+TGG - chr1_4:23337160-23337179 Msa0156720:intron 35.0%
! GCAGAAAATGATTTGTGACA+AGG - chr1_4:23337351-23337370 Msa0156720:CDS 35.0%
! TAAATAGAGCTTGACTGGTT+TGG - chr1_4:23337452-23337471 Msa0156720:CDS 35.0%
! GAAGTGCTAAATGTTCAGAA+GGG - chr1_4:23337534-23337553 Msa0156720:CDS 35.0%
ATTTGACATTCCTTAGTGGA+TGG - chr1_4:23337565-23337584 Msa0156720:CDS 35.0%
!! TCCTTAGTGGATGGAAATTT+TGG - chr1_4:23337574-23337593 Msa0156720:CDS 35.0%
!! CCTTAGTGGATGGAAATTTT+GGG - chr1_4:23337575-23337594 Msa0156720:CDS 35.0%
GTAGAGAAAGACATAAAGCT+AGG + chr1_4:23337739-23337758 None:intergenic 35.0%
! GAAGATTTTGCAAAATGAGG+TGG + chr1_4:23335070-23335089 None:intergenic 35.0%
TATAAAACCACTACTGGTAG+TGG - chr1_4:23335220-23335239 Msa0156720:three_prime_UTR 35.0%
! AGTTTTGCCACAAAACTTGT+TGG + chr1_4:23335335-23335354 None:intergenic 35.0%
AGTGTTTAAACTATCAGTGG+TGG - chr1_4:23335462-23335481 Msa0156720:CDS 35.0%
! AAACTATCAGTGGTGGAAAA+TGG - chr1_4:23335469-23335488 Msa0156720:CDS 35.0%
! AACTATCAGTGGTGGAAAAT+GGG - chr1_4:23335470-23335489 Msa0156720:CDS 35.0%
ATATCAACATGTTAGTGTCG+TGG + chr1_4:23335536-23335555 None:intergenic 35.0%
CTCTTAGTAGTAGACGTTAA+TGG + chr1_4:23335897-23335916 None:intergenic 35.0%
ATATAGACCTCCTTCATAAG+TGG + chr1_4:23335982-23336001 None:intergenic 35.0%
! GTCTCTGAAGAATGTGTAAT+CGG - chr1_4:23336022-23336041 Msa0156720:intron 35.0%
GAATGTGTAATCGGTCAATT+TGG - chr1_4:23336031-23336050 Msa0156720:intron 35.0%
GTAGAACGACTCAATTGAAA+AGG - chr1_4:23336106-23336125 Msa0156720:CDS 35.0%
AGAACGACTCAATTGAAAAG+GGG - chr1_4:23336108-23336127 Msa0156720:CDS 35.0%
CTTACAAGATCGAACTCTTT+CGG - chr1_4:23336199-23336218 Msa0156720:intron 35.0%
AGATGCTCTATAAGACTTGT+GGG - chr1_4:23336258-23336277 Msa0156720:intron 35.0%
ATAACAAATGTTGCTGGAAG+TGG - chr1_4:23336281-23336300 Msa0156720:intron 35.0%
CTTTATCAGCGATGGAAAAT+GGG - chr1_4:23336327-23336346 Msa0156720:intron 35.0%
TTTATCAGCGATGGAAAATG+GGG - chr1_4:23336328-23336347 Msa0156720:intron 35.0%
!!! TATGTTTTGGCACAATGTGA+AGG - chr1_4:23336395-23336414 Msa0156720:intron 35.0%
AGTTATGGCTATTACCCTAA+TGG - chr1_4:23336530-23336549 Msa0156720:intron 35.0%
GTTCTTACCTGAAGAAAATG+AGG + chr1_4:23336582-23336601 None:intergenic 35.0%
! CTTTTCCCAACACCAAATTT+TGG + chr1_4:23336630-23336649 None:intergenic 35.0%
!! CAAAATTTGGTGTTGGGAAA+AGG - chr1_4:23336628-23336647 Msa0156720:intron 35.0%
AACATTTGTCATAAAGGGCA+AGG + chr1_4:23336706-23336725 None:intergenic 35.0%
TTGCCCTTTATGACAAATGT+TGG - chr1_4:23336705-23336724 Msa0156720:intron 35.0%
! TTTTGATCAAATTCGTCGCT+TGG - chr1_4:23336837-23336856 Msa0156720:intron 35.0%
!! GTCGCTTGGTTGATATTTTT+AGG - chr1_4:23336851-23336870 Msa0156720:intron 35.0%
! TTTTAATCGAGTTTGTCCCT+CGG + chr1_4:23336964-23336983 None:intergenic 35.0%
! AGTACCTTTTCCTTAACCAT+TGG + chr1_4:23337069-23337088 None:intergenic 35.0%
ATAATACTAGGAGGAATTGC+TGG - chr1_4:23337160-23337179 Msa0156720:intron 35.0%
! GCAGAAAATGATTTGTGACA+AGG - chr1_4:23337351-23337370 Msa0156720:CDS 35.0%
! TAAATAGAGCTTGACTGGTT+TGG - chr1_4:23337452-23337471 Msa0156720:CDS 35.0%
! GAAGTGCTAAATGTTCAGAA+GGG - chr1_4:23337534-23337553 Msa0156720:CDS 35.0%
ATTTGACATTCCTTAGTGGA+TGG - chr1_4:23337565-23337584 Msa0156720:CDS 35.0%
!! TCCTTAGTGGATGGAAATTT+TGG - chr1_4:23337574-23337593 Msa0156720:CDS 35.0%
!! CCTTAGTGGATGGAAATTTT+GGG - chr1_4:23337575-23337594 Msa0156720:CDS 35.0%
GTAGAGAAAGACATAAAGCT+AGG + chr1_4:23337739-23337758 None:intergenic 35.0%
! TTGGATAGCCTTAAAGCCTT+AGG + chr1_4:23334852-23334871 None:intergenic 40.0%
CAAACACTTTCTACACTCCT+TGG - chr1_4:23335163-23335182 Msa0156720:three_prime_UTR 40.0%
ACTGTGAAACTAGTGAACCA+AGG + chr1_4:23335183-23335202 None:intergenic 40.0%
AGTGGCCAAAACAGTATAAC+TGG - chr1_4:23335238-23335257 Msa0156720:three_prime_UTR 40.0%
!! ACTGGTTTGTTCCAATGTAG+AGG - chr1_4:23335256-23335275 Msa0156720:three_prime_UTR 40.0%
!! CTGGTTTGTTCCAATGTAGA+GGG - chr1_4:23335257-23335276 Msa0156720:three_prime_UTR 40.0%
!! TGGTTTGTTCCAATGTAGAG+GGG - chr1_4:23335258-23335277 Msa0156720:three_prime_UTR 40.0%
GCTGGTTATACCCAAATATC+AGG - chr1_4:23335403-23335422 Msa0156720:CDS 40.0%
! ACTATCAGTGGTGGAAAATG+GGG - chr1_4:23335471-23335490 Msa0156720:CDS 40.0%
GTGGAAAATGGGGTTGTTAA+TGG - chr1_4:23335481-23335500 Msa0156720:intron 40.0%
AATGGGGTTGTTAATGGTCA+TGG - chr1_4:23335487-23335506 Msa0156720:intron 40.0%
GATGGTGACTGCATTGTTAT+CGG - chr1_4:23335783-23335802 Msa0156720:intron 40.0%
!!! GTGCTCGTCATTTTTACAAC+TGG + chr1_4:23335875-23335894 None:intergenic 40.0%
TGTGATGTCTGTTGTAGATG+AGG - chr1_4:23335921-23335940 Msa0156720:intron 40.0%
GAACGACTCAATTGAAAAGG+GGG - chr1_4:23336109-23336128 Msa0156720:CDS 40.0%
CAGATGCTCTATAAGACTTG+TGG - chr1_4:23336257-23336276 Msa0156720:intron 40.0%
TGTGGGATAACAAATGTTGC+TGG - chr1_4:23336275-23336294 Msa0156720:intron 40.0%
! AATGTTGCTGGAAGTGGTTT+TGG - chr1_4:23336287-23336306 Msa0156720:intron 40.0%
GCTTTATCAGCGATGGAAAA+TGG - chr1_4:23336326-23336345 Msa0156720:intron 40.0%
ATGGAAAATGGGGTTGTTAG+TGG - chr1_4:23336338-23336357 Msa0156720:intron 40.0%
GCACAATGTGAAGGTGATAT+TGG - chr1_4:23336404-23336423 Msa0156720:intron 40.0%
! GATATTGGTGACTCTGATTG+TGG - chr1_4:23336419-23336438 Msa0156720:intron 40.0%
!! CAAAGAGCTCAAGTTGAATG+TGG - chr1_4:23336464-23336483 Msa0156720:intron 40.0%
GAATGTGGCAACTCTATTTC+TGG - chr1_4:23336479-23336498 Msa0156720:intron 40.0%
GTCTAGATGGAACTCCATTA+GGG + chr1_4:23336547-23336566 None:intergenic 40.0%
TGTCTAGATGGAACTCCATT+AGG + chr1_4:23336548-23336567 None:intergenic 40.0%
CTGCTCCCTAAAATTTCCAA+TGG - chr1_4:23337050-23337069 Msa0156720:intron 40.0%
!! ATTATAGCAGCTGTTTTCCC+TGG + chr1_4:23337145-23337164 None:intergenic 40.0%
ACAGCTGCTATAATACTAGG+AGG - chr1_4:23337151-23337170 Msa0156720:intron 40.0%
TATCTCGCGCAGATTATTGA+CGG - chr1_4:23337325-23337344 Msa0156720:CDS 40.0%
TGTGGTAAATAGAGCTTGAC+TGG - chr1_4:23337447-23337466 Msa0156720:CDS 40.0%
!! GGAAGTGCTAAATGTTCAGA+AGG - chr1_4:23337533-23337552 Msa0156720:CDS 40.0%
CCCAAAATTTCCATCCACTA+AGG + chr1_4:23337578-23337597 None:intergenic 40.0%
AAATAACAGTGTCACCCACA+TGG + chr1_4:23337618-23337637 None:intergenic 40.0%
! TTGGATAGCCTTAAAGCCTT+AGG + chr1_4:23334852-23334871 None:intergenic 40.0%
CAAACACTTTCTACACTCCT+TGG - chr1_4:23335163-23335182 Msa0156720:three_prime_UTR 40.0%
ACTGTGAAACTAGTGAACCA+AGG + chr1_4:23335183-23335202 None:intergenic 40.0%
AGTGGCCAAAACAGTATAAC+TGG - chr1_4:23335238-23335257 Msa0156720:three_prime_UTR 40.0%
!! ACTGGTTTGTTCCAATGTAG+AGG - chr1_4:23335256-23335275 Msa0156720:three_prime_UTR 40.0%
!! CTGGTTTGTTCCAATGTAGA+GGG - chr1_4:23335257-23335276 Msa0156720:three_prime_UTR 40.0%
!! TGGTTTGTTCCAATGTAGAG+GGG - chr1_4:23335258-23335277 Msa0156720:three_prime_UTR 40.0%
GCTGGTTATACCCAAATATC+AGG - chr1_4:23335403-23335422 Msa0156720:CDS 40.0%
! ACTATCAGTGGTGGAAAATG+GGG - chr1_4:23335471-23335490 Msa0156720:CDS 40.0%
GTGGAAAATGGGGTTGTTAA+TGG - chr1_4:23335481-23335500 Msa0156720:intron 40.0%
AATGGGGTTGTTAATGGTCA+TGG - chr1_4:23335487-23335506 Msa0156720:intron 40.0%
GATGGTGACTGCATTGTTAT+CGG - chr1_4:23335783-23335802 Msa0156720:intron 40.0%
!!! GTGCTCGTCATTTTTACAAC+TGG + chr1_4:23335875-23335894 None:intergenic 40.0%
TGTGATGTCTGTTGTAGATG+AGG - chr1_4:23335921-23335940 Msa0156720:intron 40.0%
GAACGACTCAATTGAAAAGG+GGG - chr1_4:23336109-23336128 Msa0156720:CDS 40.0%
CAGATGCTCTATAAGACTTG+TGG - chr1_4:23336257-23336276 Msa0156720:intron 40.0%
TGTGGGATAACAAATGTTGC+TGG - chr1_4:23336275-23336294 Msa0156720:intron 40.0%
! AATGTTGCTGGAAGTGGTTT+TGG - chr1_4:23336287-23336306 Msa0156720:intron 40.0%
GCTTTATCAGCGATGGAAAA+TGG - chr1_4:23336326-23336345 Msa0156720:intron 40.0%
ATGGAAAATGGGGTTGTTAG+TGG - chr1_4:23336338-23336357 Msa0156720:intron 40.0%
GCACAATGTGAAGGTGATAT+TGG - chr1_4:23336404-23336423 Msa0156720:intron 40.0%
! GATATTGGTGACTCTGATTG+TGG - chr1_4:23336419-23336438 Msa0156720:intron 40.0%
!! CAAAGAGCTCAAGTTGAATG+TGG - chr1_4:23336464-23336483 Msa0156720:intron 40.0%
GAATGTGGCAACTCTATTTC+TGG - chr1_4:23336479-23336498 Msa0156720:intron 40.0%
GTCTAGATGGAACTCCATTA+GGG + chr1_4:23336547-23336566 None:intergenic 40.0%
TGTCTAGATGGAACTCCATT+AGG + chr1_4:23336548-23336567 None:intergenic 40.0%
CTGCTCCCTAAAATTTCCAA+TGG - chr1_4:23337050-23337069 Msa0156720:intron 40.0%
!! ATTATAGCAGCTGTTTTCCC+TGG + chr1_4:23337145-23337164 None:intergenic 40.0%
ACAGCTGCTATAATACTAGG+AGG - chr1_4:23337151-23337170 Msa0156720:intron 40.0%
TATCTCGCGCAGATTATTGA+CGG - chr1_4:23337325-23337344 Msa0156720:CDS 40.0%
TGTGGTAAATAGAGCTTGAC+TGG - chr1_4:23337447-23337466 Msa0156720:CDS 40.0%
!! GGAAGTGCTAAATGTTCAGA+AGG - chr1_4:23337533-23337552 Msa0156720:CDS 40.0%
CCCAAAATTTCCATCCACTA+AGG + chr1_4:23337578-23337597 None:intergenic 40.0%
AAATAACAGTGTCACCCACA+TGG + chr1_4:23337618-23337637 None:intergenic 40.0%
GCACATGTCCTAAGGCTTTA+AGG - chr1_4:23334841-23334860 Msa0156720:three_prime_UTR 45.0%
!! TTTTGTGGTGGTGAGAAGGT+GGG + chr1_4:23334887-23334906 None:intergenic 45.0%
!!! ATGGTTTTGTGGTGGTGAGA+AGG + chr1_4:23334891-23334910 None:intergenic 45.0%
TAGTGAGATCCCCTCTACAT+TGG + chr1_4:23335270-23335289 None:intergenic 45.0%
GCTGCTAGAGTTCAACTTCT+TGG - chr1_4:23335358-23335377 Msa0156720:intron 45.0%
CAACATGTTAGTGTCGTGGT+TGG + chr1_4:23335532-23335551 None:intergenic 45.0%
AGACACACGTCATCCATCAA+AGG - chr1_4:23335610-23335629 Msa0156720:intron 45.0%
! ACGTCATCCATCAAAGGTGT+TGG - chr1_4:23335616-23335635 Msa0156720:intron 45.0%
!! CGTCATCCATCAAAGGTGTT+GGG - chr1_4:23335617-23335636 Msa0156720:intron 45.0%
!! GTCATCCATCAAAGGTGTTG+GGG - chr1_4:23335618-23335637 Msa0156720:intron 45.0%
CCTTCATAAGTGGTCCACTA+TGG + chr1_4:23335972-23335991 None:intergenic 45.0%
!! CCATAGTGGACCACTTATGA+AGG - chr1_4:23335969-23335988 Msa0156720:intron 45.0%
! TAGTGGACCACTTATGAAGG+AGG - chr1_4:23335972-23335991 Msa0156720:intron 45.0%
!!! AAGTGGTTTTGGCGAGAGAA+GGG - chr1_4:23336298-23336317 Msa0156720:intron 45.0%
AATGGGGTTGTTAGTGGTCA+TGG - chr1_4:23336344-23336363 Msa0156720:intron 45.0%
ACATGGCTCAACAAGGGATA+TGG + chr1_4:23337601-23337620 None:intergenic 45.0%
ATATCCCTTGTTGAGCCATG+TGG - chr1_4:23337600-23337619 Msa0156720:CDS 45.0%
TATCCCTTGTTGAGCCATGT+GGG - chr1_4:23337601-23337620 Msa0156720:CDS 45.0%
GCACATGTCCTAAGGCTTTA+AGG - chr1_4:23334841-23334860 Msa0156720:three_prime_UTR 45.0%
!! TTTTGTGGTGGTGAGAAGGT+GGG + chr1_4:23334887-23334906 None:intergenic 45.0%
!!! ATGGTTTTGTGGTGGTGAGA+AGG + chr1_4:23334891-23334910 None:intergenic 45.0%
TAGTGAGATCCCCTCTACAT+TGG + chr1_4:23335270-23335289 None:intergenic 45.0%
GCTGCTAGAGTTCAACTTCT+TGG - chr1_4:23335358-23335377 Msa0156720:intron 45.0%
CAACATGTTAGTGTCGTGGT+TGG + chr1_4:23335532-23335551 None:intergenic 45.0%
AGACACACGTCATCCATCAA+AGG - chr1_4:23335610-23335629 Msa0156720:intron 45.0%
! ACGTCATCCATCAAAGGTGT+TGG - chr1_4:23335616-23335635 Msa0156720:intron 45.0%
!! CGTCATCCATCAAAGGTGTT+GGG - chr1_4:23335617-23335636 Msa0156720:intron 45.0%
!! GTCATCCATCAAAGGTGTTG+GGG - chr1_4:23335618-23335637 Msa0156720:intron 45.0%
CCTTCATAAGTGGTCCACTA+TGG + chr1_4:23335972-23335991 None:intergenic 45.0%
!! CCATAGTGGACCACTTATGA+AGG - chr1_4:23335969-23335988 Msa0156720:intron 45.0%
! TAGTGGACCACTTATGAAGG+AGG - chr1_4:23335972-23335991 Msa0156720:intron 45.0%
!!! AAGTGGTTTTGGCGAGAGAA+GGG - chr1_4:23336298-23336317 Msa0156720:intron 45.0%
AATGGGGTTGTTAGTGGTCA+TGG - chr1_4:23336344-23336363 Msa0156720:intron 45.0%
ACATGGCTCAACAAGGGATA+TGG + chr1_4:23337601-23337620 None:intergenic 45.0%
ATATCCCTTGTTGAGCCATG+TGG - chr1_4:23337600-23337619 Msa0156720:CDS 45.0%
TATCCCTTGTTGAGCCATGT+GGG - chr1_4:23337601-23337620 Msa0156720:CDS 45.0%
CATGTGCAGATGGGTGAGTT+GGG + chr1_4:23334828-23334847 None:intergenic 50.0%
ACATGTGCAGATGGGTGAGT+TGG + chr1_4:23334829-23334848 None:intergenic 50.0%
ACCCATCTGCACATGTCCTA+AGG - chr1_4:23334833-23334852 Msa0156720:three_prime_UTR 50.0%
GCCTTAGGACATGTGCAGAT+GGG + chr1_4:23334837-23334856 None:intergenic 50.0%
AGCCTTAGGACATGTGCAGA+TGG + chr1_4:23334838-23334857 None:intergenic 50.0%
!! GTTTTGTGGTGGTGAGAAGG+TGG + chr1_4:23334888-23334907 None:intergenic 50.0%
!! GTTTTGGCCACTACCAGTAG+TGG + chr1_4:23335230-23335249 None:intergenic 50.0%
!!! GAAGTGGTTTTGGCGAGAGA+AGG - chr1_4:23336297-23336316 Msa0156720:intron 50.0%
CAATGACAGGGCAAGATCCA+GGG - chr1_4:23337125-23337144 Msa0156720:intron 50.0%
ACTAGGAGGAATTGCTGGAG+TGG - chr1_4:23337165-23337184 Msa0156720:intron 50.0%
TCACCCACATGGCTCAACAA+GGG + chr1_4:23337607-23337626 None:intergenic 50.0%
CATGTGCAGATGGGTGAGTT+GGG + chr1_4:23334828-23334847 None:intergenic 50.0%
ACATGTGCAGATGGGTGAGT+TGG + chr1_4:23334829-23334848 None:intergenic 50.0%
ACCCATCTGCACATGTCCTA+AGG - chr1_4:23334833-23334852 Msa0156720:three_prime_UTR 50.0%
GCCTTAGGACATGTGCAGAT+GGG + chr1_4:23334837-23334856 None:intergenic 50.0%
AGCCTTAGGACATGTGCAGA+TGG + chr1_4:23334838-23334857 None:intergenic 50.0%
!! GTTTTGTGGTGGTGAGAAGG+TGG + chr1_4:23334888-23334907 None:intergenic 50.0%
!! GTTTTGGCCACTACCAGTAG+TGG + chr1_4:23335230-23335249 None:intergenic 50.0%
!!! GAAGTGGTTTTGGCGAGAGA+AGG - chr1_4:23336297-23336316 Msa0156720:intron 50.0%
CAATGACAGGGCAAGATCCA+GGG - chr1_4:23337125-23337144 Msa0156720:intron 50.0%
ACTAGGAGGAATTGCTGGAG+TGG - chr1_4:23337165-23337184 Msa0156720:intron 50.0%
TCACCCACATGGCTCAACAA+GGG + chr1_4:23337607-23337626 None:intergenic 50.0%
GGTAGCCCCAACACCTTTGA+TGG + chr1_4:23335626-23335645 None:intergenic 55.0%
! GGACGCTGCTTTATCAGCGA+TGG - chr1_4:23336319-23336338 Msa0156720:intron 55.0%
GCAATGACAGGGCAAGATCC+AGG - chr1_4:23337124-23337143 Msa0156720:intron 55.0%
GTCACCCACATGGCTCAACA+AGG + chr1_4:23337608-23337627 None:intergenic 55.0%
GGTAGCCCCAACACCTTTGA+TGG + chr1_4:23335626-23335645 None:intergenic 55.0%
! GGACGCTGCTTTATCAGCGA+TGG - chr1_4:23336319-23336338 Msa0156720:intron 55.0%
GCAATGACAGGGCAAGATCC+AGG - chr1_4:23337124-23337143 Msa0156720:intron 55.0%
GTCACCCACATGGCTCAACA+AGG + chr1_4:23337608-23337627 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 23334793 23337840 23334793 ID=Msa0156720;Name=Msa0156720
chr1_4 mRNA 23334793 23337840 23334793 ID=Msa0156720-mRNA-1;Parent=Msa0156720;Name=Msa0156720-mRNA-1;_AED=0.20;_eAED=0.20;_QI=17|0.75|0.8|1|0.5|0.4|5|496|289
chr1_4 exon 23334793 23335296 23334793 ID=Msa0156720-mRNA-1:exon:8178;Parent=Msa0156720-mRNA-1
chr1_4 exon 23335392 23335499 23335392 ID=Msa0156720-mRNA-1:exon:8177;Parent=Msa0156720-mRNA-1
chr1_4 exon 23336040 23336216 23336040 ID=Msa0156720-mRNA-1:exon:8176;Parent=Msa0156720-mRNA-1
chr1_4 exon 23337209 23337684 23337209 ID=Msa0156720-mRNA-1:exon:8175;Parent=Msa0156720-mRNA-1
chr1_4 exon 23337723 23337840 23337723 ID=Msa0156720-mRNA-1:exon:8174;Parent=Msa0156720-mRNA-1
chr1_4 five_prime_UTR 23337824 23337840 23337824 ID=Msa0156720-mRNA-1:five_prime_utr;Parent=Msa0156720-mRNA-1
chr1_4 CDS 23337723 23337823 23337723 ID=Msa0156720-mRNA-1:cds;Parent=Msa0156720-mRNA-1
chr1_4 CDS 23337209 23337684 23337209 ID=Msa0156720-mRNA-1:cds;Parent=Msa0156720-mRNA-1
chr1_4 CDS 23336040 23336216 23336040 ID=Msa0156720-mRNA-1:cds;Parent=Msa0156720-mRNA-1
chr1_4 CDS 23335392 23335499 23335392 ID=Msa0156720-mRNA-1:cds;Parent=Msa0156720-mRNA-1
chr1_4 CDS 23335289 23335296 23335289 ID=Msa0156720-mRNA-1:cds;Parent=Msa0156720-mRNA-1
chr1_4 three_prime_UTR 23334793 23335288 23334793 ID=Msa0156720-mRNA-1:three_prime_utr;Parent=Msa0156720-mRNA-1
Gene Sequence

>Msa0156720

ATGCAATGCAACTTACCCAACTCACCCATCTGCACATGTCCTAAGGCTTTAAGGCTATCCAAAGAAAATTTAATCCCACCTTCTCACCACCACAAAACCATAGATTTTCCTCAAAATTGCAATGATTTGATACCTTACTACTACACAAAAAGCAAAATGAGTTTCACCTTAAAACCCATATTTCTTTCATTTATTCTAGCTTTATTCACTAATCTTAACCCACCTCATTTTGCAAAATCTTCTTCAGATTACACTACATTAGTCTACAAAGGTTGTTCAAAAGAAACTTTTATAGATCCAAATGGAATATACTCACAAACACTTTCTACACTCCTTGGTTCACTAGTTTCACAGTCTACCAAAACAAAGTTCTATAAAACCACTACTGGTAGTGGCCAAAACAGTATAACTGGTTTGTTCCAATGTAGAGGGGATCTCACTAATTCTGCTTGCTACAATTGTGTAAAGAAACTTCCAATTTTGTCCAACAAGTTTTGTGGCAAAACTATTGCTGCTAGAGTTCAACTTCTTGGTTGTTATCTACTATATGAAGTTGCTGGTTATACCCAAATATCAGGTGATATTGGTGACTCTGATTGTGGACAGTGTGTAAAAACTGCTGTTCAAAGAGCTCAAGTTGAATGTGGCAACTCTATTTCTGGTGAAATCTTTTTGCATAAGTGTTTCATTAGTTATGGCTATTACCCTAATGGAGTTCCATCTAGACATTCTTCATATTCCTCATTTTCTTCAGGGCAAGATCCAGGGAAAACAGCTGCTATAATACTAGGAGGAATTGCTGGAGTGGCTTTTCTAGTTATATTCTTGCTATTTGCTAGGAATTTGACAAAGAAACACAATGATTATTGA
Protein sequence

>Msa0156720

MQCNLPNSPICTCPKALRLSKENLIPPSHHHKTIDFPQNCNDLIPYYYTKSKMSFTLKPIFLSFILALFTNLNPPHFAKSSSDYTTLVYKGCSKETFIDPNGIYSQTLSTLLGSLVSQSTKTKFYKTTTGSGQNSITGLFQCRGDLTNSACYNCVKKLPILSNKFCGKTIAARVQLLGCYLLYEVAGYTQISGDIGDSDCGQCVKTAVQRAQVECGNSISGEIFLHKCFISYGYYPNGVPSRHSSYSSFSSGQDPGKTAAIILGGIAGVAFLVIFLLFARNLTKKHNDY*