Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825020 | XP_039690403.1 | 96.844 | 602 | 10 | 2 | 1 | 593 | 1 | 602 | 0.0 | 1199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825020 | sp|Q0AW31|PUR9_SYNWW | 49.905 | 525 | 240 | 10 | 72 | 593 | 2 | 506 | 7.93e-168 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825020 | G7KEF8 | 96.844 | 602 | 10 | 2 | 1 | 593 | 1 | 602 | 0.0 | 1199 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa0825020 | 0.805675 | 1.190700e-49 | -8.615850e-47 |
| Msa0016670 | Msa0825020 | 0.824394 | 8.266989e-54 | -8.615850e-47 |
| Msa0029710 | Msa0825020 | 0.802065 | 6.694899e-49 | -8.615850e-47 |
| Msa0032120 | Msa0825020 | 0.840727 | 7.307036e-58 | -8.615850e-47 |
| Msa0032400 | Msa0825020 | 0.817032 | 4.068479e-52 | -8.615850e-47 |
| Msa0032840 | Msa0825020 | -0.801275 | 9.721776e-49 | -8.615850e-47 |
| Msa0043670 | Msa0825020 | -0.800093 | 1.694337e-48 | -8.615850e-47 |
| Msa0053110 | Msa0825020 | 0.809791 | 1.589105e-50 | -8.615850e-47 |
| Msa0063580 | Msa0825020 | 0.814658 | 1.377021e-51 | -8.615850e-47 |
| Msa0096670 | Msa0825020 | 0.810751 | 9.865242e-51 | -8.615850e-47 |
| Msa0110360 | Msa0825020 | 0.807762 | 4.314407e-50 | -8.615850e-47 |
| Msa0110970 | Msa0825020 | 0.833895 | 4.100993e-56 | -8.615850e-47 |
| Msa0606160 | Msa0825020 | 0.808830 | 2.554222e-50 | -8.615850e-47 |
| Msa0618040 | Msa0825020 | 0.807197 | 5.685846e-50 | -8.615850e-47 |
| Msa0654540 | Msa0825020 | 0.809890 | 1.512923e-50 | -8.615850e-47 |
| Msa0696620 | Msa0825020 | 0.812183 | 4.818184e-51 | -8.615850e-47 |
| Msa0787940 | Msa0825020 | 0.838230 | 3.252968e-57 | -8.615850e-47 |
| Msa0825020 | Msa0864310 | 0.890927 | 6.324180e-74 | -8.615850e-47 |
| Msa0825020 | Msa0930780 | 0.822715 | 2.042240e-53 | -8.615850e-47 |
| Msa0825020 | Msa1012380 | 0.803550 | 3.304537e-49 | -8.615850e-47 |
| Msa0825020 | Msa1012810 | 0.807641 | 4.576397e-50 | -8.615850e-47 |
| Msa0825020 | Msa1055690 | 0.803946 | 2.735143e-49 | -8.615850e-47 |
| Msa0825020 | Msa1065370 | 0.822709 | 2.049143e-53 | -8.615850e-47 |
| Msa0825020 | Msa1074810 | 0.801442 | 8.988780e-49 | -8.615850e-47 |
| Msa0825020 | Msa1097640 | 0.802287 | 6.027298e-49 | -8.615850e-47 |
| Msa0825020 | Msa1127950 | 0.809833 | 1.555884e-50 | -8.615850e-47 |
| Msa0825020 | Msa1139810 | 0.819912 | 9.050612e-53 | -8.615850e-47 |
| Msa0825020 | Msa1159100 | 0.814885 | 1.226455e-51 | -8.615850e-47 |
| Msa0825020 | Msa1188630 | 0.812014 | 5.245696e-51 | -8.615850e-47 |
| Msa0825020 | Msa1188940 | 0.808109 | 3.639111e-50 | -8.615850e-47 |
| Msa0825020 | Msa1226620 | 0.846247 | 2.448551e-59 | -8.615850e-47 |
| Msa0825020 | Msa1252190 | 0.812225 | 4.718928e-51 | -8.615850e-47 |
| Msa0825020 | Msa1284300 | 0.809507 | 1.828413e-50 | -8.615850e-47 |
| Msa0825020 | Msa1284520 | 0.816320 | 5.877242e-52 | -8.615850e-47 |
| Msa0825020 | Msa1300490 | 0.802027 | 6.815724e-49 | -8.615850e-47 |
| Msa0825020 | Msa1336120 | 0.813429 | 2.571146e-51 | -8.615850e-47 |
| Msa0825020 | Msa1358550 | 0.833059 | 6.629564e-56 | -8.615850e-47 |
| Msa0825020 | Msa1382310 | 0.813487 | 2.496839e-51 | -8.615850e-47 |
| Msa0825020 | Msa1388820 | 0.802492 | 5.468261e-49 | -8.615850e-47 |
| Msa0825020 | Msa1389950 | 0.840907 | 6.554166e-58 | -8.615850e-47 |
| Msa0825020 | Msa1398480 | 0.825505 | 4.519911e-54 | -8.615850e-47 |
| Msa0825020 | Msa1414320 | 0.808686 | 2.741262e-50 | -8.615850e-47 |
| Msa0825020 | Msa1435920 | 0.851193 | 1.041099e-60 | -8.615850e-47 |
| Msa0825020 | Msa1440260 | -0.807429 | 5.076788e-50 | -8.615850e-47 |
| Msa0156720 | Msa0825020 | 0.800347 | 1.503871e-48 | -8.615850e-47 |
| Msa0185700 | Msa0825020 | 0.823054 | 1.702857e-53 | -8.615850e-47 |
| Msa0230550 | Msa0825020 | -0.806030 | 1.002679e-49 | -8.615850e-47 |
| Msa0365850 | Msa0825020 | 0.817525 | 3.152341e-52 | -8.615850e-47 |
| Msa0413720 | Msa0825020 | 0.857091 | 2.067209e-62 | -8.615850e-47 |
| Msa0425940 | Msa0825020 | 0.825695 | 4.074320e-54 | -8.615850e-47 |
| Msa0426020 | Msa0825020 | 0.816768 | 4.664475e-52 | -8.615850e-47 |
| Msa0426160 | Msa0825020 | 0.829276 | 5.636935e-55 | -8.615850e-47 |
| Msa0467300 | Msa0825020 | 0.816081 | 6.646185e-52 | -8.615850e-47 |
| Msa0505370 | Msa0825020 | 0.858334 | 8.848832e-63 | -8.615850e-47 |
| Msa0527600 | Msa0825020 | 0.806268 | 8.933915e-50 | -8.615850e-47 |
| Msa0546840 | Msa0825020 | 0.800840 | 1.193524e-48 | -8.615850e-47 |
| Msa0564030 | Msa0825020 | 0.818409 | 1.990043e-52 | -8.615850e-47 |
| Msa0574890 | Msa0825020 | 0.813618 | 2.336270e-51 | -8.615850e-47 |
| Msa0577390 | Msa0825020 | 0.827987 | 1.154592e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825020 | MtrunA17_Chr5g0446531 | 96.523 | 604 | 10 | 3 | 1 | 593 | 1 | 604 | 0.0 | 1195 |
| Msa0825020 | MtrunA17_Chr3g0081851 | 91.457 | 597 | 44 | 4 | 1 | 593 | 1 | 594 | 0.0 | 1089 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825020 | AT2G35040.1 | 84.545 | 550 | 81 | 4 | 48 | 593 | 47 | 596 | 0.0 | 966 |
| Msa0825020 | AT2G35040.2 | 86.842 | 532 | 67 | 3 | 65 | 593 | 14 | 545 | 0.0 | 962 |
Find 146 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTAAACTCACCATTTC+AGG | 0.148250 | 5_3:-64705642 | None:intergenic |
| GCCCTTCTGGAATTTCTTAA+AGG | 0.158509 | 5_3:+64707046 | Msa0825020:CDS |
| AAATGACAATGGCATGTTTA+AGG | 0.202023 | 5_3:+64703726 | None:intergenic |
| GGAAACGGACTCCAAGAATT+AGG | 0.229559 | 5_3:+64705417 | Msa0825020:CDS |
| GTAATAACTACCCTAATTCT+TGG | 0.259320 | 5_3:-64705428 | None:intergenic |
| AGCTTCACGCGATGATATTC+TGG | 0.265858 | 5_3:+64708174 | Msa0825020:CDS |
| CTTCATCTTCACAGCGATTC+AGG | 0.279233 | 5_3:+64704007 | Msa0825020:CDS |
| TTGCAGGACAATTGTATGTT+AGG | 0.284103 | 5_3:+64708962 | Msa0825020:intron |
| CTCATCATCTTCCAACTACT+TGG | 0.308768 | 5_3:+64703893 | Msa0825020:CDS |
| GATGTAACTTTATCATAAAA+TGG | 0.314110 | 5_3:-64706616 | None:intergenic |
| AGGATACCTCCATGTATGTT+AGG | 0.327313 | 5_3:-64706099 | None:intergenic |
| AAGTCCCTTCTCTGTATAGC+TGG | 0.327564 | 5_3:-64708610 | None:intergenic |
| AAAGCTGGAGCTGATGTTAA+AGG | 0.329196 | 5_3:+64709037 | Msa0825020:CDS |
| GCAGAATCACAAAGATGTTT+TGG | 0.343683 | 5_3:+64706997 | Msa0825020:intron |
| TATGATAAAGTTACATCAAC+TGG | 0.354039 | 5_3:+64706622 | Msa0825020:CDS |
| AGAAGATTACCCCGCCCTTC+TGG | 0.358562 | 5_3:+64707033 | Msa0825020:CDS |
| TTACAAATGTGAGGCACTTC+AGG | 0.360088 | 5_3:+64709779 | Msa0825020:CDS |
| AGTGATGCTTTCTTCCCCTT+TGG | 0.367102 | 5_3:+64709073 | Msa0825020:CDS |
| GCTGATCCTGTCAGTGCATT+TGG | 0.368891 | 5_3:+64708220 | Msa0825020:CDS |
| TCCTTGTCTCCCCATCGGTT+GGG | 0.396686 | 5_3:-64708563 | None:intergenic |
| AGAAGGGAACAAAGAATGTT+TGG | 0.402055 | 5_3:+64703790 | Msa0825020:exon |
| AGATTCACTATTGTTTCAAC+TGG | 0.402366 | 5_3:+64705552 | Msa0825020:intron |
| GTGGAAAGTCGAAGACTCTA+AGG | 0.406834 | 5_3:+64708643 | Msa0825020:CDS |
| TTATACTAAATAACATATCA+TGG | 0.410873 | 5_3:-64709996 | None:intergenic |
| AACTGGAGGCATTGAATTTG+AGG | 0.415684 | 5_3:+64706639 | Msa0825020:CDS |
| CTTAAACTCTCCACACGATT+CGG | 0.415765 | 5_3:-64709001 | None:intergenic |
| TGGTGGAGGGTGGCTAGCTC+AGG | 0.419726 | 5_3:+64708716 | Msa0825020:CDS |
| GCTCTCAGTACACATGGAAT+TGG | 0.426355 | 5_3:+64706153 | Msa0825020:CDS |
| ATCCTTGTCTCCCCATCGGT+TGG | 0.430233 | 5_3:-64708564 | None:intergenic |
| GAGAGAAGAAGGAGAGTAAA+GGG | 0.436186 | 5_3:-64703848 | None:intergenic |
| AAGAAGGATCTCGCATTTGT+TGG | 0.440002 | 5_3:+64705396 | Msa0825020:CDS |
| GGACAATTGTATGTTAGGTA+TGG | 0.442803 | 5_3:+64708967 | Msa0825020:intron |
| GCTTACACAGTTCCCTGAAA+TGG | 0.444808 | 5_3:+64705629 | Msa0825020:CDS |
| AAACTACATACCCAAGTAGT+TGG | 0.445106 | 5_3:-64703904 | None:intergenic |
| ATTGTATGAGTCCCAGCTAT+AGG | 0.454013 | 5_3:-64704045 | None:intergenic |
| CACCTTTCCATGGTGTTGGA+TGG | 0.454761 | 5_3:-64707865 | None:intergenic |
| ATTCCTATCAAACCTATAGC+TGG | 0.457443 | 5_3:+64704033 | Msa0825020:CDS |
| GTAGACTGTTGCAATAAGTA+TGG | 0.459251 | 5_3:+64709742 | Msa0825020:CDS |
| GAAACGGACTCCAAGAATTA+GGG | 0.461860 | 5_3:+64705418 | Msa0825020:CDS |
| CTCGCACCTTTCCATGGTGT+TGG | 0.465197 | 5_3:-64707869 | None:intergenic |
| GAAACCAAGACGAACAGTTC+AGG | 0.470254 | 5_3:+64707068 | Msa0825020:CDS |
| AGAATAGCAATGAGGAAAGC+TGG | 0.471856 | 5_3:+64709022 | Msa0825020:CDS |
| TTAGCCTGAACTGTTCGTCT+TGG | 0.483032 | 5_3:-64707072 | None:intergenic |
| CTTTGCAGCAGCTCGAATCA+TGG | 0.485084 | 5_3:-64706695 | None:intergenic |
| GAGAACACGGGTGGAGGAAG+CGG | 0.489650 | 5_3:-64703818 | None:intergenic |
| AGGTGGTAGTATAAGAGATC+AGG | 0.489865 | 5_3:+64709714 | Msa0825020:CDS |
| GATATCGTTGTCAGACAAGA+AGG | 0.491514 | 5_3:+64705380 | Msa0825020:CDS |
| TGATGTTAAAGGCGCAGCCT+TGG | 0.493828 | 5_3:+64709048 | Msa0825020:CDS |
| GCTTCTGCATTGGAGAGTGC+TGG | 0.495037 | 5_3:+64705582 | Msa0825020:CDS |
| GTCCCAGCTATAGGTTTGAT+AGG | 0.495351 | 5_3:-64704036 | None:intergenic |
| TTAAGAAATTCCAGAAGGGC+GGG | 0.498944 | 5_3:-64707043 | None:intergenic |
| AAGGATGTTCTATGAAATAG+TGG | 0.499945 | 5_3:+64708581 | Msa0825020:CDS |
| TGGAGGAACAGCTTCTGCAT+TGG | 0.504986 | 5_3:+64705572 | Msa0825020:CDS |
| CGAGAGAAGAAGGAGAGTAA+AGG | 0.505222 | 5_3:-64703849 | None:intergenic |
| ACTTGGATGCTGATGCTGCT+TGG | 0.505797 | 5_3:+64708086 | Msa0825020:CDS |
| GCAGCAGCTCGAATCATGGC+TGG | 0.506238 | 5_3:-64706691 | None:intergenic |
| TGTTTAGCAGCGAGAGAAGA+AGG | 0.507848 | 5_3:-64703859 | None:intergenic |
| AAAGTAAACTCACCATTTCA+GGG | 0.512428 | 5_3:-64705641 | None:intergenic |
| TTCGCGATGCGGAGTTTGCA+TGG | 0.518983 | 5_3:+64708811 | Msa0825020:CDS |
| GACAATTGTATGTTAGGTAT+GGG | 0.523870 | 5_3:+64708968 | Msa0825020:CDS |
| AAGGGACTTGAGATTCTTCG+TGG | 0.526147 | 5_3:+64708624 | Msa0825020:CDS |
| AGTCCCTTCTCTGTATAGCT+GGG | 0.526900 | 5_3:-64708609 | None:intergenic |
| GGATACCTCCATGTATGTTA+GGG | 0.527663 | 5_3:-64706098 | None:intergenic |
| TTCACTATTGTTTCAACTGG+AGG | 0.527694 | 5_3:+64705555 | Msa0825020:CDS |
| CATGATTCGAGCTGCTGCAA+AGG | 0.529173 | 5_3:+64706696 | Msa0825020:CDS |
| CTGCAGTATCTGAGTGGCTG+TGG | 0.535976 | 5_3:+64707137 | Msa0825020:CDS |
| GCGAGAAACAGAGAAGAAGA+AGG | 0.535986 | 5_3:+64703773 | Msa0825020:five_prime_UTR |
| TGCACAGAGAACACGGGTGG+AGG | 0.541553 | 5_3:-64703824 | None:intergenic |
| AAGCTTTCACTCAGACAAGT+TGG | 0.544179 | 5_3:+64708696 | Msa0825020:CDS |
| TCACTCAGACAAGTTGGTGG+AGG | 0.545545 | 5_3:+64708702 | Msa0825020:CDS |
| CACTCAGACAAGTTGGTGGA+GGG | 0.548888 | 5_3:+64708703 | Msa0825020:CDS |
| AGTTCAGGCTAAAGCTTGCA+TGG | 0.549319 | 5_3:+64707083 | Msa0825020:CDS |
| CACTACTCTTTACAAATGTG+AGG | 0.553478 | 5_3:+64709770 | Msa0825020:CDS |
| AACTCTCCACACGATTCGGT+TGG | 0.553727 | 5_3:-64708997 | None:intergenic |
| AGCCAACTCGCACCTTTCCA+TGG | 0.553948 | 5_3:-64707875 | None:intergenic |
| TTCCTATCAAACCTATAGCT+GGG | 0.556309 | 5_3:+64704034 | Msa0825020:CDS |
| TCATCATCTTCCAACTACTT+GGG | 0.558505 | 5_3:+64703894 | Msa0825020:CDS |
| AATTTAGAAGCCCAACCGAT+GGG | 0.561483 | 5_3:+64708553 | Msa0825020:CDS |
| TAAGAAATTCCAGAAGGGCG+GGG | 0.561883 | 5_3:-64707042 | None:intergenic |
| GATCCTGTCAGTGCATTTGG+CGG | 0.562171 | 5_3:+64708223 | Msa0825020:CDS |
| CGAGAAACAGAGAAGAAGAA+GGG | 0.562530 | 5_3:+64703774 | Msa0825020:five_prime_UTR |
| TGCTTCACAACTACACATGT+GGG | 0.563763 | 5_3:-64708133 | None:intergenic |
| GATCTCGCATTTGTTGGAAA+CGG | 0.564069 | 5_3:+64705402 | Msa0825020:CDS |
| CTTTCACTCAGACAAGTTGG+TGG | 0.567270 | 5_3:+64708699 | Msa0825020:CDS |
| GAAGCATGTGAAAGTGGGAT+TGG | 0.568345 | 5_3:+64709676 | Msa0825020:CDS |
| GCCCAACCGATGGGGAGACA+AGG | 0.568935 | 5_3:+64708562 | Msa0825020:CDS |
| AATGTCATATAATAACTACT+TGG | 0.572767 | 5_3:+64708069 | Msa0825020:CDS |
| TTCCTTTAAGAAATTCCAGA+AGG | 0.572900 | 5_3:-64707048 | None:intergenic |
| AAATCTGCTTCATCTACTCA+TGG | 0.573141 | 5_3:+64704078 | Msa0825020:CDS |
| GAAAGAGGCACTGTCAAACT+CGG | 0.573270 | 5_3:-64707741 | None:intergenic |
| AGACTTGCAGAGGTCAATGC+TGG | 0.574369 | 5_3:+64707828 | Msa0825020:CDS |
| CAATGCTATTGTGATAGCTA+AGG | 0.575910 | 5_3:+64708857 | Msa0825020:CDS |
| CATCAAGTTCAATGTGGTGT+CGG | 0.576647 | 5_3:+64708764 | Msa0825020:CDS |
| GGAGGCATTGAATTTGAGGA+TGG | 0.576680 | 5_3:+64706643 | Msa0825020:CDS |
| TCGCGTGAAGCTACGCCGCA+AGG | 0.579703 | 5_3:-64708163 | None:intergenic |
| ACTCTGCACCCTAACATACA+TGG | 0.579756 | 5_3:+64706090 | Msa0825020:CDS |
| ATTCCGCCAAATGCACTGAC+AGG | 0.580671 | 5_3:-64708226 | None:intergenic |
| ACATTGAACTTGATGTCGGA+TGG | 0.584600 | 5_3:-64708756 | None:intergenic |
| GAAGAAAGCATCACTAGCCA+AGG | 0.594165 | 5_3:-64709065 | None:intergenic |
| CTTGCAGAGGTCAATGCTGG+TGG | 0.596198 | 5_3:+64707831 | Msa0825020:CDS |
| GCTGTGGAAGCATGTGAAAG+TGG | 0.597800 | 5_3:+64709670 | Msa0825020:CDS |
| AAAGGGTTGCACAGAGAACA+CGG | 0.598094 | 5_3:-64703831 | None:intergenic |
| GAATTTAGAAGCCCAACCGA+TGG | 0.598097 | 5_3:+64708552 | Msa0825020:CDS |
| TTTCAATGTGGAAGTTGATG+AGG | 0.600427 | 5_3:+64708255 | Msa0825020:CDS |
| ATGCTTCACAACTACACATG+TGG | 0.600869 | 5_3:-64708134 | None:intergenic |
| CACCACATTGAACTTGATGT+CGG | 0.602479 | 5_3:-64708760 | None:intergenic |
| TCGCGAAGCTCACCAACTTG+AGG | 0.603170 | 5_3:-64708795 | None:intergenic |
| TGCACCCAGCTATACAGAGA+AGG | 0.606100 | 5_3:+64708605 | Msa0825020:CDS |
| TCCTTTAAGAAATTCCAGAA+GGG | 0.606676 | 5_3:-64707047 | None:intergenic |
| TCGGAGAAGACTCCTCAAGT+TGG | 0.608780 | 5_3:+64708783 | Msa0825020:CDS |
| AGTTGGTGAGCTTCGCGATG+CGG | 0.615920 | 5_3:+64708800 | Msa0825020:CDS |
| AGCTTTAACAGCTAGTCTGT+AGG | 0.618534 | 5_3:-64708200 | None:intergenic |
| GAACATCCTTGTCTCCCCAT+CGG | 0.623520 | 5_3:-64708568 | None:intergenic |
| ATTGAAGCTCTCAGTACACA+TGG | 0.624286 | 5_3:+64706147 | Msa0825020:CDS |
| TATAAAATATTGTCAAATAG+CGG | 0.625188 | 5_3:+64710014 | Msa0825020:three_prime_UTR |
| TGGCTGTGGAAGCAAAGTGC+AGG | 0.627213 | 5_3:+64707151 | Msa0825020:CDS |
| TTTAAGAAATTCCAGAAGGG+CGG | 0.628262 | 5_3:-64707044 | None:intergenic |
| GCACCCAGCTATACAGAGAA+GGG | 0.628335 | 5_3:+64708606 | Msa0825020:CDS |
| TGTTGACAAAAGACTTGCAG+AGG | 0.631409 | 5_3:+64707818 | Msa0825020:CDS |
| CTGTGGAAGCAAAGTGCAGG+AGG | 0.633177 | 5_3:+64707154 | Msa0825020:CDS |
| AACAGCTTGGAAAGATGCTG+TGG | 0.633339 | 5_3:+64709654 | Msa0825020:intron |
| ATTGGTGTTATTGCAGAACC+AGG | 0.634278 | 5_3:+64709694 | Msa0825020:CDS |
| TGTATGTTAGGTATGGGAAG+CGG | 0.635594 | 5_3:+64708974 | Msa0825020:CDS |
| AAGCGGCCAACCGAATCGTG+TGG | 0.636421 | 5_3:+64708991 | Msa0825020:CDS |
| CGGAATTGTAGCTTTCAATG+TGG | 0.638388 | 5_3:+64708243 | Msa0825020:CDS |
| TCAGACAAGTTGGTGGAGGG+TGG | 0.644539 | 5_3:+64708706 | Msa0825020:CDS |
| CTGTGGAAGCATGTGAAAGT+GGG | 0.646123 | 5_3:+64709671 | Msa0825020:CDS |
| AGAGTTTAAGAATAGCAATG+AGG | 0.651555 | 5_3:+64709014 | Msa0825020:CDS |
| GGAATTGAAAACATTGACAT+CGG | 0.651778 | 5_3:+64706664 | Msa0825020:CDS |
| AGCCATCCAACACCATGGAA+AGG | 0.656974 | 5_3:+64707863 | Msa0825020:CDS |
| GTGCTACAACATAGACGTAG+AGG | 0.661492 | 5_3:+64709950 | Msa0825020:intron |
| ATTTAGAAGCCCAACCGATG+GGG | 0.662841 | 5_3:+64708554 | Msa0825020:CDS |
| GATAAAGTTACATCAACTGG+AGG | 0.665318 | 5_3:+64706625 | Msa0825020:CDS |
| ATTGAAAACATTGACATCGG+TGG | 0.666352 | 5_3:+64706667 | Msa0825020:CDS |
| GCTATTAACACTTACCAAAG+GGG | 0.673587 | 5_3:-64709087 | None:intergenic |
| TGATCTCTTATACTACCACC+TGG | 0.676807 | 5_3:-64709712 | None:intergenic |
| GCTTCACAACTACACATGTG+GGG | 0.678910 | 5_3:-64708132 | None:intergenic |
| GTGAAGCATACTAATCCTTG+CGG | 0.681266 | 5_3:+64708148 | Msa0825020:CDS |
| GGTTGCACAGAGAACACGGG+TGG | 0.684042 | 5_3:-64703827 | None:intergenic |
| GCTACAGCCATCCAACACCA+TGG | 0.691776 | 5_3:+64707858 | Msa0825020:CDS |
| GGTGTTATTGCAGAACCAGG+TGG | 0.700300 | 5_3:+64709697 | Msa0825020:CDS |
| AAGGGTTGCACAGAGAACAC+GGG | 0.710300 | 5_3:-64703830 | None:intergenic |
| ATGATTCTGCAGTATCTGAG+TGG | 0.712497 | 5_3:+64707131 | Msa0825020:CDS |
| AGAGGCACTGTCAAACTCGG+AGG | 0.716499 | 5_3:-64707738 | None:intergenic |
| ATCCGACATCAAGTTCAATG+TGG | 0.728574 | 5_3:+64708758 | Msa0825020:CDS |
| CTGCACCCTAACATACATGG+AGG | 0.735750 | 5_3:+64706093 | Msa0825020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATGAAAATAAAAAAG+GGG | - | chr5_3:64704120-64704139 | None:intergenic | 10.0% |
| !! | GAAATTAATGAAAATAAAAA+AGG | - | chr5_3:64704122-64704141 | None:intergenic | 10.0% |
| !!! | TATTTTCATTAATTTCATTT+AGG | + | chr5_3:64704126-64704145 | Msa0825020:intron | 10.0% |
| !!! | ATTTTCATTAATTTCATTTA+GGG | + | chr5_3:64704127-64704146 | Msa0825020:intron | 10.0% |
| !! | ACAAAAAAAAAAAGATTAAA+TGG | + | chr5_3:64707299-64707318 | Msa0825020:intron | 10.0% |
| !! | ATCTAAAAATATAAAATTAC+TGG | + | chr5_3:64707911-64707930 | Msa0825020:intron | 10.0% |
| !! | GTAAAAAAAAAATCATATTA+GGG | - | chr5_3:64709385-64709404 | None:intergenic | 10.0% |
| !! | AGTAAAAAAAAAATCATATT+AGG | - | chr5_3:64709386-64709405 | None:intergenic | 10.0% |
| !! | AAACCTAAAAAAAATATTAT+AGG | + | chr5_3:64709462-64709481 | Msa0825020:intron | 10.0% |
| !!! | TTTTCATTAATTTCATTTAG+GGG | + | chr5_3:64704128-64704147 | Msa0825020:intron | 15.0% |
| !!! | ATCAGATTTTTATTAAAATG+AGG | + | chr5_3:64704196-64704215 | Msa0825020:intron | 15.0% |
| !!! | TAATACTTAATTTAAGGTTA+TGG | - | chr5_3:64704237-64704256 | None:intergenic | 15.0% |
| !!! | AAAAAACTGTTTTTATCAAA+TGG | + | chr5_3:64704257-64704276 | Msa0825020:intron | 15.0% |
| !!! | AAAAACTGTTTTTATCAAAT+GGG | + | chr5_3:64704258-64704277 | Msa0825020:intron | 15.0% |
| !! | TTTGTTCATATATAAGAAAT+AGG | + | chr5_3:64704315-64704334 | Msa0825020:intron | 15.0% |
| !!! | TTGATAAAAACACTTATTTT+AGG | - | chr5_3:64705058-64705077 | None:intergenic | 15.0% |
| !!! | TAACATAATTTTCTACAATT+TGG | - | chr5_3:64705151-64705170 | None:intergenic | 15.0% |
| !! | TAAAATCATGTAAATAAATC+TGG | - | chr5_3:64705247-64705266 | None:intergenic | 15.0% |
| !! | AATTTAAGAATAAAAATTCC+TGG | + | chr5_3:64705313-64705332 | Msa0825020:intron | 15.0% |
| !! | TGAATTATGATATAACATTA+TGG | + | chr5_3:64706243-64706262 | Msa0825020:intron | 15.0% |
| !!! | CATGATAATAATCTTATTTT+TGG | - | chr5_3:64707428-64707447 | None:intergenic | 15.0% |
| !! | AAGATTATTATCATGTAAAT+AGG | + | chr5_3:64707433-64707452 | Msa0825020:intron | 15.0% |
| !! | AGATTATTATCATGTAAATA+GGG | + | chr5_3:64707434-64707453 | Msa0825020:intron | 15.0% |
| !! | AATAGATATTATATCATGTT+TGG | + | chr5_3:64707966-64707985 | Msa0825020:intron | 15.0% |
| !!! | GAAACTTTTTTATGATTAAA+CGG | + | chr5_3:64708900-64708919 | Msa0825020:intron | 15.0% |
| !!! | AGTCCTATAATATTTTTTTT+AGG | - | chr5_3:64709468-64709487 | None:intergenic | 15.0% |
| !! | TTATACTAAATAACATATCA+TGG | - | chr5_3:64709999-64710018 | None:intergenic | 15.0% |
| !! | TATAAAATATTGTCAAATAG+CGG | + | chr5_3:64710014-64710033 | Msa0825020:three_prime_UTR | 15.0% |
| !!! | TCTTTTTTTTTTTTTGGTAG+TGG | - | chr5_3:64704438-64704457 | None:intergenic | 20.0% |
| !! | ACCAAAAAAAAAAAAAGACT+AGG | + | chr5_3:64704440-64704459 | Msa0825020:intron | 20.0% |
| !!! | TCCTAGTCTTTTTTTTTTTT+TGG | - | chr5_3:64704444-64704463 | None:intergenic | 20.0% |
| !!! | TTTAGTTCATTTAACTGATT+AGG | + | chr5_3:64704464-64704483 | Msa0825020:intron | 20.0% |
| !!! | ATTTTACTTTGTACTAAAAG+AGG | - | chr5_3:64704490-64704509 | None:intergenic | 20.0% |
| !!! | TCTTTTAGTACAAAGTAAAA+TGG | + | chr5_3:64704489-64704508 | Msa0825020:intron | 20.0% |
| !!! | TTTTTTCCAATTAAGATTAC+AGG | + | chr5_3:64704758-64704777 | Msa0825020:intron | 20.0% |
| !!! | TTTTTCCAATTAAGATTACA+GGG | + | chr5_3:64704759-64704778 | Msa0825020:intron | 20.0% |
| !!! | TATTTAGTCTTAAGATTGTT+TGG | + | chr5_3:64705106-64705125 | Msa0825020:intron | 20.0% |
| !! | CATAATTCATAAACCATATT+TGG | - | chr5_3:64706232-64706251 | None:intergenic | 20.0% |
| !! | GATGTAACTTTATCATAAAA+TGG | - | chr5_3:64706619-64706638 | None:intergenic | 20.0% |
| !! | TATTTGAACGATATTTCAAT+AGG | - | chr5_3:64706954-64706973 | None:intergenic | 20.0% |
| !!! | GATAATAATCTTATTTTTGG+TGG | - | chr5_3:64707425-64707444 | None:intergenic | 20.0% |
| !!! | GTTGTCATATCTTTTAAATA+GGG | + | chr5_3:64707456-64707475 | Msa0825020:intron | 20.0% |
| !!! | ACAAAATACTTTAGAGAATA+TGG | + | chr5_3:64707617-64707636 | Msa0825020:intron | 20.0% |
| !! | AATGTCATATAATAACTACT+TGG | + | chr5_3:64708069-64708088 | Msa0825020:CDS | 20.0% |
| !! | TAAACACTATAATCTTTCTT+AGG | - | chr5_3:64708410-64708429 | None:intergenic | 20.0% |
| !!! | GAAATTTAAAATGTTACCTA+GGG | - | chr5_3:64708451-64708470 | None:intergenic | 20.0% |
| !!! | AACATTTTAAATTTCCATCT+TGG | + | chr5_3:64708456-64708475 | Msa0825020:intron | 20.0% |
| !!! | GCTTGTTTTTTTCTATTTTT+AGG | + | chr5_3:64708509-64708528 | Msa0825020:intron | 20.0% |
| !!! | TTGTATAATAGTTTTTTCGT+TGG | + | chr5_3:64709416-64709435 | Msa0825020:intron | 20.0% |
| !!! | ATTTGCAATTATTTTCTGAT+AGG | - | chr5_3:64709532-64709551 | None:intergenic | 20.0% |
| !!! | ATTTTGAAATGTGTATGTTC+AGG | + | chr5_3:64703981-64704000 | Msa0825020:intron | 25.0% |
| ! | AGTTATACTTAGATTCTGTT+TGG | + | chr5_3:64704567-64704586 | Msa0825020:intron | 25.0% |
| ! | ATAACTTTGTACTGTTTATC+TGG | + | chr5_3:64704629-64704648 | Msa0825020:intron | 25.0% |
| ! | GTAGTGTTTGGTATAATTAA+CGG | + | chr5_3:64704680-64704699 | Msa0825020:intron | 25.0% |
| !! | TTTTCCAATTAAGATTACAG+GGG | + | chr5_3:64704760-64704779 | Msa0825020:intron | 25.0% |
| ! | TTAAGATTGTGAGAAAATGA+CGG | + | chr5_3:64704867-64704886 | Msa0825020:intron | 25.0% |
| ! | ATGACTAAAAAAGATCCATT+TGG | - | chr5_3:64704896-64704915 | None:intergenic | 25.0% |
| !!! | AATGGATCTTTTTTAGTCAT+AGG | + | chr5_3:64704896-64704915 | Msa0825020:intron | 25.0% |
| !!! | TTAGTACTGTTTTTTCTCAA+AGG | + | chr5_3:64704965-64704984 | Msa0825020:intron | 25.0% |
| !! | ACTAAATATGAAGAGAGTTT+TGG | - | chr5_3:64705094-64705113 | None:intergenic | 25.0% |
| ! | AGGGTAGTTATTACAATTAA+TGG | + | chr5_3:64705437-64705456 | Msa0825020:intron | 25.0% |
| !! | TTTCGATCAGTGTTATTAAA+TGG | + | chr5_3:64705766-64705785 | Msa0825020:intron | 25.0% |
| ! | GTTGAAATCTTGTACAAATT+CGG | + | chr5_3:64705994-64706013 | Msa0825020:intron | 25.0% |
| !! | TAATTGGTTAAAAAGTACAC+AGG | - | chr5_3:64706020-64706039 | None:intergenic | 25.0% |
| ! | TTACAGTCATTGTTAGTAAT+TGG | - | chr5_3:64706036-64706055 | None:intergenic | 25.0% |
| ! | ATTACTAACAATGACTGTAA+TGG | + | chr5_3:64706036-64706055 | Msa0825020:intron | 25.0% |
| ! | AGATTTAGTGATTAATGAGT+TGG | + | chr5_3:64706204-64706223 | Msa0825020:intron | 25.0% |
| ! | TATGATAAAGTTACATCAAC+TGG | + | chr5_3:64706622-64706641 | Msa0825020:CDS | 25.0% |
| ! | CATTAAAAAGTTGCGTAAAA+TGG | + | chr5_3:64706771-64706790 | Msa0825020:intron | 25.0% |
| !!! | CTTTTTAAGAAATACCAGAA+GGG | - | chr5_3:64706814-64706833 | None:intergenic | 25.0% |
| !!! | ACTTTTTAAGAAATACCAGA+AGG | - | chr5_3:64706815-64706834 | None:intergenic | 25.0% |
| !! | TATTCTTTTCCAGTGTTTAA+TGG | - | chr5_3:64706873-64706892 | None:intergenic | 25.0% |
| ! | ACTAGAATATAATCCTAGAT+TGG | + | chr5_3:64707230-64707249 | Msa0825020:intron | 25.0% |
| !! | GGTTGTCATATCTTTTAAAT+AGG | + | chr5_3:64707455-64707474 | Msa0825020:intron | 25.0% |
| ! | CATTCAACATGTCATTATTA+TGG | + | chr5_3:64707587-64707606 | Msa0825020:intron | 25.0% |
| ! | ATTCTATATAAACTCTTCTC+AGG | - | chr5_3:64708336-64708355 | None:intergenic | 25.0% |
| ! | TATAGTGTTTATGAAGATTG+AGG | + | chr5_3:64708419-64708438 | Msa0825020:intron | 25.0% |
| !! | GGAAATTTAAAATGTTACCT+AGG | - | chr5_3:64708452-64708471 | None:intergenic | 25.0% |
| !!! | ACTTTTTTATGATTAAACGG+AGG | + | chr5_3:64708903-64708922 | Msa0825020:intron | 25.0% |
| !!! | TTCTTTTGTTATCTTTTTGC+AGG | + | chr5_3:64708946-64708965 | Msa0825020:intron | 25.0% |
| ! | GATAGATTAATGATTCTTCT+CGG | + | chr5_3:64709160-64709179 | Msa0825020:intron | 25.0% |
| !!! | GATGGATTAATGATTCTTTT+TGG | + | chr5_3:64709226-64709245 | Msa0825020:intron | 25.0% |
| ! | ATAAATTGCTATACCAGAAA+AGG | + | chr5_3:64709282-64709301 | Msa0825020:intron | 25.0% |
| !! | AAAAATATGTAAGCCTTTTC+TGG | - | chr5_3:64709298-64709317 | None:intergenic | 25.0% |
| !! | AGAAAAGGCTTACATATTTT+TGG | + | chr5_3:64709297-64709316 | Msa0825020:intron | 25.0% |
| ! | CAAAAAAATAGGGACTTAAA+CGG | - | chr5_3:64709344-64709363 | None:intergenic | 25.0% |
| ! | AAACAAGGACCAAAAAAATA+GGG | - | chr5_3:64709354-64709373 | None:intergenic | 25.0% |
| TAGGAAATTCATAACAGACT+AGG | + | chr5_3:64704334-64704353 | Msa0825020:intron | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | + | chr5_3:64704394-64704413 | Msa0825020:intron | 30.0% | |
| !!! | TTTTTTTTTTGGTAGTGGCT+GGG | - | chr5_3:64704433-64704452 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTGGTAGTGGC+TGG | - | chr5_3:64704434-64704453 | None:intergenic | 30.0% |
| !!! | GCTATTGATTTTGTAGTGTT+TGG | + | chr5_3:64704668-64704687 | Msa0825020:intron | 30.0% |
| TTTACCCCTGTAATCTTAAT+TGG | - | chr5_3:64704767-64704786 | None:intergenic | 30.0% | |
| AAGACACATACTTGAGTTTA+TGG | - | chr5_3:64704932-64704951 | None:intergenic | 30.0% | |
| !! | ACTGAATCACTTATTTCTAC+TGG | - | chr5_3:64704992-64705011 | None:intergenic | 30.0% |
| !!! | CACTTATTTTAGGTGCAAAT+TGG | - | chr5_3:64705048-64705067 | None:intergenic | 30.0% |
| GAATAAAAATTCCTGGCATT+TGG | + | chr5_3:64705320-64705339 | Msa0825020:intron | 30.0% | |
| GTAATAACTACCCTAATTCT+TGG | - | chr5_3:64705431-64705450 | None:intergenic | 30.0% | |
| AGATTCACTATTGTTTCAAC+TGG | + | chr5_3:64705552-64705571 | Msa0825020:intron | 30.0% | |
| AAAGTAAACTCACCATTTCA+GGG | - | chr5_3:64705644-64705663 | None:intergenic | 30.0% | |
| AAAAGTAAACTCACCATTTC+AGG | - | chr5_3:64705645-64705664 | None:intergenic | 30.0% | |
| ! | TCTTGGATTTTGTATACCAT+CGG | + | chr5_3:64705693-64705712 | Msa0825020:intron | 30.0% |
| ATCACTTTACAAATTGGCTA+TGG | - | chr5_3:64705824-64705843 | None:intergenic | 30.0% | |
| ! | ATCAGAATCAGTGTTTTCAA+CGG | - | chr5_3:64705916-64705935 | None:intergenic | 30.0% |
| ! | GAGCTTCAATATGATGTTTT+TGG | - | chr5_3:64706137-64706156 | None:intergenic | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+TGG | + | chr5_3:64706216-64706235 | Msa0825020:intron | 30.0% |
| ! | TGCTAAAAGTTTTCCATTTC+AGG | + | chr5_3:64706562-64706581 | Msa0825020:intron | 30.0% |
| GGAATTGAAAACATTGACAT+CGG | + | chr5_3:64706664-64706683 | Msa0825020:CDS | 30.0% | |
| CACTGAAAAAACATCATTGT+TGG | + | chr5_3:64706840-64706859 | Msa0825020:intron | 30.0% | |
| GGTTAAATACCATTAAACAC+TGG | + | chr5_3:64706861-64706880 | Msa0825020:intron | 30.0% | |
| ! | TCCTTTAAGAAATTCCAGAA+GGG | - | chr5_3:64707050-64707069 | None:intergenic | 30.0% |
| ! | TTCCTTTAAGAAATTCCAGA+AGG | - | chr5_3:64707051-64707070 | None:intergenic | 30.0% |
| TCTACTCTTAGCAGATTAAA+TGG | + | chr5_3:64707263-64707282 | Msa0825020:intron | 30.0% | |
| !!! | TACTGGTCTTGCTTATTTTT+TGG | - | chr5_3:64707400-64707419 | None:intergenic | 30.0% |
| TCAACATGTCATTATTATGG+AGG | + | chr5_3:64707590-64707609 | Msa0825020:intron | 30.0% | |
| !!! | AGAGAATTTTTGAGTGAAAG+AGG | - | chr5_3:64707759-64707778 | None:intergenic | 30.0% |
| !!! | CGACTTTTTTCAATTGACTT+GGG | - | chr5_3:64708288-64708307 | None:intergenic | 30.0% |
| !!! | TCGACTTTTTTCAATTGACT+TGG | - | chr5_3:64708289-64708308 | None:intergenic | 30.0% |
| ! | GTCTTATCTCCTTTTAATGT+AGG | - | chr5_3:64708314-64708333 | None:intergenic | 30.0% |
| !!! | CTATTTTTAGGTTCTTGCTA+AGG | + | chr5_3:64708521-64708540 | Msa0825020:intron | 30.0% |
| AAGGATGTTCTATGAAATAG+TGG | + | chr5_3:64708581-64708600 | Msa0825020:CDS | 30.0% | |
| ! | TTTTTATGATTAAACGGAGG+TGG | + | chr5_3:64708906-64708925 | Msa0825020:intron | 30.0% |
| GACAATTGTATGTTAGGTAT+GGG | + | chr5_3:64708968-64708987 | Msa0825020:CDS | 30.0% | |
| AGAGTTTAAGAATAGCAATG+AGG | + | chr5_3:64709014-64709033 | Msa0825020:CDS | 30.0% | |
| GTTACTCAATGTTATCTTCT+CGG | - | chr5_3:64709191-64709210 | None:intergenic | 30.0% | |
| GAGAAGATAACATTGAGTAA+CGG | + | chr5_3:64709190-64709209 | Msa0825020:intron | 30.0% | |
| !!! | CGTTTAAGTCCCTATTTTTT+TGG | + | chr5_3:64709342-64709361 | Msa0825020:intron | 30.0% |
| CAAACAAGGACCAAAAAAAT+AGG | - | chr5_3:64709355-64709374 | None:intergenic | 30.0% | |
| !!! | CTATTTTTTTGGTCCTTGTT+TGG | + | chr5_3:64709353-64709372 | Msa0825020:intron | 30.0% |
| TAAATAGTCAAGACACATTC+TGG | - | chr5_3:64709632-64709651 | None:intergenic | 30.0% | |
| TTGACTATTTATGAACAGCT+TGG | + | chr5_3:64709641-64709660 | Msa0825020:intron | 30.0% | |
| !!! | GCACTGATCATTTTTGTTTT+AGG | + | chr5_3:64709801-64709820 | Msa0825020:exon | 30.0% |
| !!! | ACCTATTTTTGACATCAAGT+AGG | + | chr5_3:64709863-64709882 | Msa0825020:intron | 30.0% |
| ACCTACTTGATGTCAAAAAT+AGG | - | chr5_3:64709867-64709886 | None:intergenic | 30.0% | |
| TTATCAGCGTTGTTAAATAG+CGG | + | chr5_3:64709911-64709930 | Msa0825020:intron | 30.0% | |
| TTGTTAAATAGCGGCTATAA+TGG | + | chr5_3:64709920-64709939 | Msa0825020:intron | 30.0% | |
| AGAAGGGAACAAAGAATGTT+TGG | + | chr5_3:64703790-64703809 | Msa0825020:exon | 35.0% | |
| TCATCATCTTCCAACTACTT+GGG | + | chr5_3:64703894-64703913 | Msa0825020:CDS | 35.0% | |
| AAACTACATACCCAAGTAGT+TGG | - | chr5_3:64703907-64703926 | None:intergenic | 35.0% | |
| ATTCCTATCAAACCTATAGC+TGG | + | chr5_3:64704033-64704052 | Msa0825020:CDS | 35.0% | |
| TTCCTATCAAACCTATAGCT+GGG | + | chr5_3:64704034-64704053 | Msa0825020:CDS | 35.0% | |
| AAATCTGCTTCATCTACTCA+TGG | + | chr5_3:64704078-64704097 | Msa0825020:CDS | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | + | chr5_3:64704399-64704418 | Msa0825020:intron | 35.0% | |
| !!! | TTTTTTTTTGGTAGTGGCTG+GGG | - | chr5_3:64704432-64704451 | None:intergenic | 35.0% |
| !! | AGCACGTAATACAAGTTGAT+CGG | - | chr5_3:64704522-64704541 | None:intergenic | 35.0% |
| ! | GTTGATGAGTTAGCTTATAG+CGG | + | chr5_3:64704606-64704625 | Msa0825020:intron | 35.0% |
| AGAAAATGACGGTTACCAAA+TGG | + | chr5_3:64704878-64704897 | Msa0825020:intron | 35.0% | |
| AACAGTACTAAGTGTCTGTT+TGG | - | chr5_3:64704956-64704975 | None:intergenic | 35.0% | |
| AGAGAGTCATTTACACCATT+TGG | + | chr5_3:64705174-64705193 | Msa0825020:intron | 35.0% | |
| TACATGGAGGTAAAACCAAA+TGG | - | chr5_3:64705192-64705211 | None:intergenic | 35.0% | |
| ACTGGAACTAAAATACATGG+AGG | - | chr5_3:64705205-64705224 | None:intergenic | 35.0% | |
| ! | TGGACTGGAACTAAAATACA+TGG | - | chr5_3:64705208-64705227 | None:intergenic | 35.0% |
| !!! | ATGTATTTTAGTTCCAGTCC+AGG | + | chr5_3:64705207-64705226 | Msa0825020:intron | 35.0% |
| !!! | TGTATTTTAGTTCCAGTCCA+GGG | + | chr5_3:64705208-64705227 | Msa0825020:intron | 35.0% |
| TAAATAAATCTGGTGAGTCC+TGG | - | chr5_3:64705237-64705256 | None:intergenic | 35.0% | |
| TTCACTATTGTTTCAACTGG+AGG | + | chr5_3:64705555-64705574 | Msa0825020:CDS | 35.0% | |
| TATCTCTAGATTTGTACCGA+TGG | - | chr5_3:64705712-64705731 | None:intergenic | 35.0% | |
| !!! | CGTGGAAGATTTTTTGAGAA+TGG | + | chr5_3:64705798-64705817 | Msa0825020:intron | 35.0% |
| GCAGGAATCACTTTACAAAT+TGG | - | chr5_3:64705830-64705849 | None:intergenic | 35.0% | |
| !!! | GTGTTTCTATGACGGTTTTT+TGG | + | chr5_3:64705866-64705885 | Msa0825020:intron | 35.0% |
| GGATAACAGAATATGGCAAA+AGG | - | chr5_3:64705892-64705911 | None:intergenic | 35.0% | |
| TCAAAACGCAAGGCTTATTA+TGG | - | chr5_3:64705973-64705992 | None:intergenic | 35.0% | |
| GATTTCAACATCAAAACGCA+AGG | - | chr5_3:64705983-64706002 | None:intergenic | 35.0% | |
| GTTATGTTATCAGCTCTGTT+AGG | + | chr5_3:64706179-64706198 | Msa0825020:intron | 35.0% | |
| ! | TGACAACACTGGTTATAACA+GGG | - | chr5_3:64706343-64706362 | None:intergenic | 35.0% |
| ! | TTGACAACACTGGTTATAAC+AGG | - | chr5_3:64706344-64706363 | None:intergenic | 35.0% |
| !! | AAGTTGCTATTTGACAACAC+TGG | - | chr5_3:64706354-64706373 | None:intergenic | 35.0% |
| CAATTCGTTCAAATTCTGCT+AGG | - | chr5_3:64706380-64706399 | None:intergenic | 35.0% | |
| TTATGACCAGCGTTATCAAT+CGG | - | chr5_3:64706492-64706511 | None:intergenic | 35.0% | |
| !! | AACATCAAAAGTGCCTGAAA+TGG | - | chr5_3:64706578-64706597 | None:intergenic | 35.0% |
| GATAAAGTTACATCAACTGG+AGG | + | chr5_3:64706625-64706644 | Msa0825020:CDS | 35.0% | |
| ATTGAAAACATTGACATCGG+TGG | + | chr5_3:64706667-64706686 | Msa0825020:CDS | 35.0% | |
| ! | GCAGAATCACAAAGATGTTT+TGG | + | chr5_3:64706997-64707016 | Msa0825020:intron | 35.0% |
| !!! | TCACAAAGATGTTTTGGTAG+TGG | + | chr5_3:64707003-64707022 | Msa0825020:CDS | 35.0% |
| TTTAAGAAATTCCAGAAGGG+CGG | - | chr5_3:64707047-64707066 | None:intergenic | 35.0% | |
| ! | AGAACATGCTTTTCCAATCT+AGG | - | chr5_3:64707246-64707265 | None:intergenic | 35.0% |
| !!! | TCTTATTTTTGGTGGTCTAC+TGG | - | chr5_3:64707417-64707436 | None:intergenic | 35.0% |
| ACAACAGAGACTCTTTAAGT+AGG | - | chr5_3:64707520-64707539 | None:intergenic | 35.0% | |
| CTCAAAAATTCTCTCCGTTA+TGG | + | chr5_3:64707765-64707784 | Msa0825020:CDS | 35.0% | |
| ! | GATGAGGATTTTCACCATAA+CGG | - | chr5_3:64707782-64707801 | None:intergenic | 35.0% |
| ! | TAGAATGCAGCTTTTTGATG+AGG | - | chr5_3:64707798-64707817 | None:intergenic | 35.0% |
| TAATGCCATAACATGAATGC+AGG | + | chr5_3:64708045-64708064 | Msa0825020:intron | 35.0% | |
| CATTTCCTGCATTCATGTTA+TGG | - | chr5_3:64708053-64708072 | None:intergenic | 35.0% | |
| !! | TTTCAATGTGGAAGTTGATG+AGG | + | chr5_3:64708255-64708274 | Msa0825020:CDS | 35.0% |
| AAGTCGAGTCCTACATTAAA+AGG | + | chr5_3:64708302-64708321 | Msa0825020:intron | 35.0% | |
| ! | TCTTTCTTAGGTTTTCGACT+AGG | - | chr5_3:64708398-64708417 | None:intergenic | 35.0% |
| TTTAAATTTCCATCTTGGCG+AGG | + | chr5_3:64708461-64708480 | Msa0825020:intron | 35.0% | |
| GAAGCAAAAAAGAATGAAGC+AGG | + | chr5_3:64708672-64708691 | Msa0825020:CDS | 35.0% | |
| CAATGCTATTGTGATAGCTA+AGG | + | chr5_3:64708857-64708876 | Msa0825020:CDS | 35.0% | |
| TTGCAGGACAATTGTATGTT+AGG | + | chr5_3:64708962-64708981 | Msa0825020:intron | 35.0% | |
| GGACAATTGTATGTTAGGTA+TGG | + | chr5_3:64708967-64708986 | Msa0825020:intron | 35.0% | |
| GCTATTAACACTTACCAAAG+GGG | - | chr5_3:64709090-64709109 | None:intergenic | 35.0% | |
| CGCTATTAACACTTACCAAA+GGG | - | chr5_3:64709091-64709110 | None:intergenic | 35.0% | |
| TCGCTATTAACACTTACCAA+AGG | - | chr5_3:64709092-64709111 | None:intergenic | 35.0% | |
| TCTATGTTGTAAAGACGACT+TGG | + | chr5_3:64709132-64709151 | Msa0825020:intron | 35.0% | |
| !! | TTGTAAAGACGACTTGGTTA+TGG | + | chr5_3:64709138-64709157 | Msa0825020:intron | 35.0% |
| AACATTGAGTAACGGTAAGT+TGG | + | chr5_3:64709198-64709217 | Msa0825020:intron | 35.0% | |
| CGGAAAAAGAGTTCATTACA+AGG | - | chr5_3:64709324-64709343 | None:intergenic | 35.0% | |
| ATTAGGGACTAAACCAAACA+AGG | - | chr5_3:64709369-64709388 | None:intergenic | 35.0% | |
| GTAGACTGTTGCAATAAGTA+TGG | + | chr5_3:64709742-64709761 | Msa0825020:CDS | 35.0% | |
| CACTACTCTTTACAAATGTG+AGG | + | chr5_3:64709770-64709789 | Msa0825020:CDS | 35.0% | |
| CGAGAAACAGAGAAGAAGAA+GGG | + | chr5_3:64703774-64703793 | Msa0825020:five_prime_UTR | 40.0% | |
| GAGAGAAGAAGGAGAGTAAA+GGG | - | chr5_3:64703851-64703870 | None:intergenic | 40.0% | |
| CTCATCATCTTCCAACTACT+TGG | + | chr5_3:64703893-64703912 | Msa0825020:CDS | 40.0% | |
| ATTGTATGAGTCCCAGCTAT+AGG | - | chr5_3:64704048-64704067 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | + | chr5_3:64704400-64704419 | Msa0825020:intron | 40.0% | |
| GTGTTCTGTTGCTATGAAAC+AGG | + | chr5_3:64705342-64705361 | Msa0825020:intron | 40.0% | |
| GATATCGTTGTCAGACAAGA+AGG | + | chr5_3:64705380-64705399 | Msa0825020:CDS | 40.0% | |
| AAGAAGGATCTCGCATTTGT+TGG | + | chr5_3:64705396-64705415 | Msa0825020:CDS | 40.0% | |
| ! | GATCTCGCATTTGTTGGAAA+CGG | + | chr5_3:64705402-64705421 | Msa0825020:CDS | 40.0% |
| ! | GAAACGGACTCCAAGAATTA+GGG | + | chr5_3:64705418-64705437 | Msa0825020:CDS | 40.0% |
| ! | GTGTTATTAAATGGCAGCCA+TGG | + | chr5_3:64705775-64705794 | Msa0825020:intron | 40.0% |
| TCAAAAAATCTTCCACGCCA+TGG | - | chr5_3:64705795-64705814 | None:intergenic | 40.0% | |
| TGTAAAGTGATTCCTGCCAT+TGG | + | chr5_3:64705833-64705852 | Msa0825020:intron | 40.0% | |
| GTCATAGAAACACACCATTG+CGG | - | chr5_3:64705859-64705878 | None:intergenic | 40.0% | |
| ! | GCAATGGTGTGTTTCTATGA+CGG | + | chr5_3:64705858-64705877 | Msa0825020:intron | 40.0% |
| CAACGGTGGATAACAGAATA+TGG | - | chr5_3:64705899-64705918 | None:intergenic | 40.0% | |
| ! | AGAATCAGTGTTTTCAACGG+TGG | - | chr5_3:64705913-64705932 | None:intergenic | 40.0% |
| GGATACCTCCATGTATGTTA+GGG | - | chr5_3:64706101-64706120 | None:intergenic | 40.0% | |
| AGGATACCTCCATGTATGTT+AGG | - | chr5_3:64706102-64706121 | None:intergenic | 40.0% | |
| ATTGAAGCTCTCAGTACACA+TGG | + | chr5_3:64706147-64706166 | Msa0825020:CDS | 40.0% | |
| ! | AAGTCTTATCCCACTAAGTG+GGG | - | chr5_3:64706292-64706311 | None:intergenic | 40.0% |
| ! | CAAGTCTTATCCCACTAAGT+GGG | - | chr5_3:64706293-64706312 | None:intergenic | 40.0% |
| AAATAGCGTATCGCAGAACA+AGG | - | chr5_3:64706404-64706423 | None:intergenic | 40.0% | |
| !! | TGATATCCGATTGATAACGC+TGG | + | chr5_3:64706483-64706502 | Msa0825020:intron | 40.0% |
| ! | TTCAGGCACTTTTGATGTTG+TGG | + | chr5_3:64706579-64706598 | Msa0825020:intron | 40.0% |
| !! | AACTGGAGGCATTGAATTTG+AGG | + | chr5_3:64706639-64706658 | Msa0825020:CDS | 40.0% |
| TAAGAAATACCAGAAGGGCA+GGG | - | chr5_3:64706809-64706828 | None:intergenic | 40.0% | |
| TTAAGAAATACCAGAAGGGC+AGG | - | chr5_3:64706810-64706829 | None:intergenic | 40.0% | |
| TTAAGAAATTCCAGAAGGGC+GGG | - | chr5_3:64707046-64707065 | None:intergenic | 40.0% | |
| !! | GCCCTTCTGGAATTTCTTAA+AGG | + | chr5_3:64707046-64707065 | Msa0825020:CDS | 40.0% |
| ATGATTCTGCAGTATCTGAG+TGG | + | chr5_3:64707131-64707150 | Msa0825020:CDS | 40.0% | |
| TGTTGACAAAAGACTTGCAG+AGG | + | chr5_3:64707818-64707837 | Msa0825020:CDS | 40.0% | |
| TGCTTCACAACTACACATGT+GGG | - | chr5_3:64708136-64708155 | None:intergenic | 40.0% | |
| ATGCTTCACAACTACACATG+TGG | - | chr5_3:64708137-64708156 | None:intergenic | 40.0% | |
| GTGAAGCATACTAATCCTTG+CGG | + | chr5_3:64708148-64708167 | Msa0825020:CDS | 40.0% | |
| ! | AGCTTTAACAGCTAGTCTGT+AGG | - | chr5_3:64708203-64708222 | None:intergenic | 40.0% |
| CGGAATTGTAGCTTTCAATG+TGG | + | chr5_3:64708243-64708262 | Msa0825020:CDS | 40.0% | |
| AATTTAGAAGCCCAACCGAT+GGG | + | chr5_3:64708553-64708572 | Msa0825020:CDS | 40.0% | |
| AAGCTTTCACTCAGACAAGT+TGG | + | chr5_3:64708696-64708715 | Msa0825020:CDS | 40.0% | |
| ACATTGAACTTGATGTCGGA+TGG | - | chr5_3:64708759-64708778 | None:intergenic | 40.0% | |
| ATCCGACATCAAGTTCAATG+TGG | + | chr5_3:64708758-64708777 | Msa0825020:CDS | 40.0% | |
| CACCACATTGAACTTGATGT+CGG | - | chr5_3:64708763-64708782 | None:intergenic | 40.0% | |
| CATCAAGTTCAATGTGGTGT+CGG | + | chr5_3:64708764-64708783 | Msa0825020:CDS | 40.0% | |
| TGTATGTTAGGTATGGGAAG+CGG | + | chr5_3:64708974-64708993 | Msa0825020:CDS | 40.0% | |
| CTTAAACTCTCCACACGATT+CGG | - | chr5_3:64709004-64709023 | None:intergenic | 40.0% | |
| AGAATAGCAATGAGGAAAGC+TGG | + | chr5_3:64709022-64709041 | Msa0825020:CDS | 40.0% | |
| AAAGCTGGAGCTGATGTTAA+AGG | + | chr5_3:64709037-64709056 | Msa0825020:CDS | 40.0% | |
| ! | TTGGAGTCTTGTATCATGCA+GGG | + | chr5_3:64709435-64709454 | Msa0825020:intron | 40.0% |
| !! | ATTGGTGTTATTGCAGAACC+AGG | + | chr5_3:64709694-64709713 | Msa0825020:CDS | 40.0% |
| TGATCTCTTATACTACCACC+TGG | - | chr5_3:64709715-64709734 | None:intergenic | 40.0% | |
| AGGTGGTAGTATAAGAGATC+AGG | + | chr5_3:64709714-64709733 | Msa0825020:CDS | 40.0% | |
| ! | TTACAAATGTGAGGCACTTC+AGG | + | chr5_3:64709779-64709798 | Msa0825020:CDS | 40.0% |
| TTGACATCAAGTAGGTCGTA+AGG | + | chr5_3:64709871-64709890 | Msa0825020:intron | 40.0% | |
| GCGAGAAACAGAGAAGAAGA+AGG | + | chr5_3:64703773-64703792 | Msa0825020:five_prime_UTR | 45.0% | |
| AAAGGGTTGCACAGAGAACA+CGG | - | chr5_3:64703834-64703853 | None:intergenic | 45.0% | |
| CGAGAGAAGAAGGAGAGTAA+AGG | - | chr5_3:64703852-64703871 | None:intergenic | 45.0% | |
| TGTTTAGCAGCGAGAGAAGA+AGG | - | chr5_3:64703862-64703881 | None:intergenic | 45.0% | |
| CTTCATCTTCACAGCGATTC+AGG | + | chr5_3:64704007-64704026 | Msa0825020:CDS | 45.0% | |
| GTCCCAGCTATAGGTTTGAT+AGG | - | chr5_3:64704039-64704058 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCAGTTGGTT+GGG | + | chr5_3:64704372-64704391 | Msa0825020:intron | 45.0% | |
| CAGGGGTAAAATTGAGAGAG+AGG | + | chr5_3:64704777-64704796 | Msa0825020:intron | 45.0% | |
| ! | GGAAACGGACTCCAAGAATT+AGG | + | chr5_3:64705417-64705436 | Msa0825020:CDS | 45.0% |
| GCTTACACAGTTCCCTGAAA+TGG | + | chr5_3:64705629-64705648 | Msa0825020:CDS | 45.0% | |
| TCCTTCTCGAAGTCTCATCT+TGG | + | chr5_3:64705676-64705695 | Msa0825020:intron | 45.0% | |
| TCCAAGATGAGACTTCGAGA+AGG | - | chr5_3:64705680-64705699 | None:intergenic | 45.0% | |
| ! | GGCTTTTCTACACAGCTTGA+CGG | + | chr5_3:64706057-64706076 | Msa0825020:intron | 45.0% |
| ACTCTGCACCCTAACATACA+TGG | + | chr5_3:64706090-64706109 | Msa0825020:CDS | 45.0% | |
| !!! | GTTTTTGGTCTCTTCGAGCA+AGG | - | chr5_3:64706122-64706141 | None:intergenic | 45.0% |
| GCTCTCAGTACACATGGAAT+TGG | + | chr5_3:64706153-64706172 | Msa0825020:CDS | 45.0% | |
| ! | CCAAGTCTTATCCCACTAAG+TGG | - | chr5_3:64706294-64706313 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAGACT+TGG | + | chr5_3:64706291-64706310 | Msa0825020:intron | 45.0% | |
| ! | AGGCACTTTTGATGTTGTGG+TGG | + | chr5_3:64706582-64706601 | Msa0825020:intron | 45.0% |
| !! | GGAGGCATTGAATTTGAGGA+TGG | + | chr5_3:64706643-64706662 | Msa0825020:CDS | 45.0% |
| TAAGAAATTCCAGAAGGGCG+GGG | - | chr5_3:64707045-64707064 | None:intergenic | 45.0% | |
| GAAACCAAGACGAACAGTTC+AGG | + | chr5_3:64707068-64707087 | Msa0825020:CDS | 45.0% | |
| TTAGCCTGAACTGTTCGTCT+TGG | - | chr5_3:64707075-64707094 | None:intergenic | 45.0% | |
| AGTTCAGGCTAAAGCTTGCA+TGG | + | chr5_3:64707083-64707102 | Msa0825020:CDS | 45.0% | |
| !! | GAAAGAGGCACTGTCAAACT+CGG | - | chr5_3:64707744-64707763 | None:intergenic | 45.0% |
| GCTTCACAACTACACATGTG+GGG | - | chr5_3:64708135-64708154 | None:intergenic | 45.0% | |
| AGCTTCACGCGATGATATTC+TGG | + | chr5_3:64708174-64708193 | Msa0825020:CDS | 45.0% | |
| !! | CTCATTCTCACTGGCTTGTA+AGG | - | chr5_3:64708370-64708389 | None:intergenic | 45.0% |
| CAAGCCAGTGAGAATGAGTT+AGG | + | chr5_3:64708372-64708391 | Msa0825020:intron | 45.0% | |
| TAGGCCTAACTCATTCTCAC+TGG | - | chr5_3:64708379-64708398 | None:intergenic | 45.0% | |
| AAGATTGAGGCTCTTTCCCT+AGG | + | chr5_3:64708432-64708451 | Msa0825020:intron | 45.0% | |
| GAATTTAGAAGCCCAACCGA+TGG | + | chr5_3:64708552-64708571 | Msa0825020:CDS | 45.0% | |
| ATTTAGAAGCCCAACCGATG+GGG | + | chr5_3:64708554-64708573 | Msa0825020:CDS | 45.0% | |
| AGTCCCTTCTCTGTATAGCT+GGG | - | chr5_3:64708612-64708631 | None:intergenic | 45.0% | |
| AAGTCCCTTCTCTGTATAGC+TGG | - | chr5_3:64708613-64708632 | None:intergenic | 45.0% | |
| AAGGGACTTGAGATTCTTCG+TGG | + | chr5_3:64708624-64708643 | Msa0825020:CDS | 45.0% | |
| GTGGAAAGTCGAAGACTCTA+AGG | + | chr5_3:64708643-64708662 | Msa0825020:CDS | 45.0% | |
| ! | CTTTCACTCAGACAAGTTGG+TGG | + | chr5_3:64708699-64708718 | Msa0825020:CDS | 45.0% |
| !! | GAAGAAAGCATCACTAGCCA+AGG | - | chr5_3:64709068-64709087 | None:intergenic | 45.0% |
| AGTGATGCTTTCTTCCCCTT+TGG | + | chr5_3:64709073-64709092 | Msa0825020:CDS | 45.0% | |
| !! | GAGTAACGGTAAGTTGGTTG+TGG | + | chr5_3:64709204-64709223 | Msa0825020:intron | 45.0% |
| !! | AACGGTAAGTTGGTTGTGGA+TGG | + | chr5_3:64709208-64709227 | Msa0825020:intron | 45.0% |
| ! | GTTGGAGTCTTGTATCATGC+AGG | + | chr5_3:64709434-64709453 | Msa0825020:intron | 45.0% |
| AACAGCTTGGAAAGATGCTG+TGG | + | chr5_3:64709654-64709673 | Msa0825020:intron | 45.0% | |
| ! | CTGTGGAAGCATGTGAAAGT+GGG | + | chr5_3:64709671-64709690 | Msa0825020:CDS | 45.0% |
| GAAGCATGTGAAAGTGGGAT+TGG | + | chr5_3:64709676-64709695 | Msa0825020:CDS | 45.0% | |
| GTGCTACAACATAGACGTAG+AGG | + | chr5_3:64709950-64709969 | Msa0825020:intron | 45.0% | |
| !! | AAATTAATGAAAATAAAAAA+GGG | - | chr5_3:64704121-64704140 | None:intergenic | 5.0% |
| !!! | TTTTTGTTAATTTAATTTTA+GGG | - | chr5_3:64704177-64704196 | None:intergenic | 5.0% |
| !!! | ATTTTTGTTAATTTAATTTT+AGG | - | chr5_3:64704178-64704197 | None:intergenic | 5.0% |
| !!! | TTTTTTTAATACTTAATTTA+AGG | - | chr5_3:64704243-64704262 | None:intergenic | 5.0% |
| !! | AATGAAAAATATTAAATTAT+AGG | + | chr5_3:64709490-64709509 | Msa0825020:intron | 5.0% |
| !! | ATGAAAAATATTAAATTATA+GGG | + | chr5_3:64709491-64709510 | Msa0825020:intron | 5.0% |
| AAGGGTTGCACAGAGAACAC+GGG | - | chr5_3:64703833-64703852 | None:intergenic | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+TGG | + | chr5_3:64704371-64704390 | Msa0825020:intron | 50.0% | |
| GCAACAGAACACCAAATGCC+AGG | - | chr5_3:64705334-64705353 | None:intergenic | 50.0% | |
| TGGAGGAACAGCTTCTGCAT+TGG | + | chr5_3:64705572-64705591 | Msa0825020:CDS | 50.0% | |
| ATTAAATGGCAGCCATGGCG+TGG | + | chr5_3:64705780-64705799 | Msa0825020:intron | 50.0% | |
| AAACACACCATTGCGGCCAA+TGG | - | chr5_3:64705852-64705871 | None:intergenic | 50.0% | |
| CTGCACCCTAACATACATGG+AGG | + | chr5_3:64706093-64706112 | Msa0825020:CDS | 50.0% | |
| !! | ACTAAGTGGGGTTGGCTACA+TGG | - | chr5_3:64706280-64706299 | None:intergenic | 50.0% |
| ATGTAGCCAACCCCACTTAG+TGG | + | chr5_3:64706279-64706298 | Msa0825020:intron | 50.0% | |
| TGTAGCCAACCCCACTTAGT+GGG | + | chr5_3:64706280-64706299 | Msa0825020:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+TGG | - | chr5_3:64706288-64706307 | None:intergenic | 50.0% | |
| CTTTGCAGCAGCTCGAATCA+TGG | - | chr5_3:64706698-64706717 | None:intergenic | 50.0% | |
| CATGATTCGAGCTGCTGCAA+AGG | + | chr5_3:64706696-64706715 | Msa0825020:CDS | 50.0% | |
| AGAAGATTACCCTGCCCTTC+TGG | + | chr5_3:64706797-64706816 | Msa0825020:intron | 50.0% | |
| AGACTTGCAGAGGTCAATGC+TGG | + | chr5_3:64707828-64707847 | Msa0825020:CDS | 50.0% | |
| AGCCATCCAACACCATGGAA+AGG | + | chr5_3:64707863-64707882 | Msa0825020:CDS | 50.0% | |
| ! | CACCTTTCCATGGTGTTGGA+TGG | - | chr5_3:64707868-64707887 | None:intergenic | 50.0% |
| ACTTGGATGCTGATGCTGCT+TGG | + | chr5_3:64708086-64708105 | Msa0825020:CDS | 50.0% | |
| GCTGATCCTGTCAGTGCATT+TGG | + | chr5_3:64708220-64708239 | Msa0825020:CDS | 50.0% | |
| GATCCTGTCAGTGCATTTGG+CGG | + | chr5_3:64708223-64708242 | Msa0825020:CDS | 50.0% | |
| ! | ATTCCGCCAAATGCACTGAC+AGG | - | chr5_3:64708229-64708248 | None:intergenic | 50.0% |
| !! | TCACTGGCTTGTAAGGTGAG+GGG | - | chr5_3:64708363-64708382 | None:intergenic | 50.0% |
| !! | CTCACTGGCTTGTAAGGTGA+GGG | - | chr5_3:64708364-64708383 | None:intergenic | 50.0% |
| !! | TCTCACTGGCTTGTAAGGTG+AGG | - | chr5_3:64708365-64708384 | None:intergenic | 50.0% |
| TTTGCTCATCCTCGCCAAGA+TGG | - | chr5_3:64708473-64708492 | None:intergenic | 50.0% | |
| GAACATCCTTGTCTCCCCAT+CGG | - | chr5_3:64708571-64708590 | None:intergenic | 50.0% | |
| TGCACCCAGCTATACAGAGA+AGG | + | chr5_3:64708605-64708624 | Msa0825020:CDS | 50.0% | |
| GCACCCAGCTATACAGAGAA+GGG | + | chr5_3:64708606-64708625 | Msa0825020:CDS | 50.0% | |
| !! | TCACTCAGACAAGTTGGTGG+AGG | + | chr5_3:64708702-64708721 | Msa0825020:CDS | 50.0% |
| !! | CACTCAGACAAGTTGGTGGA+GGG | + | chr5_3:64708703-64708722 | Msa0825020:CDS | 50.0% |
| TCGGAGAAGACTCCTCAAGT+TGG | + | chr5_3:64708783-64708802 | Msa0825020:CDS | 50.0% | |
| !! | AACTCTCCACACGATTCGGT+TGG | - | chr5_3:64709000-64709019 | None:intergenic | 50.0% |
| ! | TGATGTTAAAGGCGCAGCCT+TGG | + | chr5_3:64709048-64709067 | Msa0825020:CDS | 50.0% |
| ! | GCTGTGGAAGCATGTGAAAG+TGG | + | chr5_3:64709670-64709689 | Msa0825020:CDS | 50.0% |
| !! | GGTGTTATTGCAGAACCAGG+TGG | + | chr5_3:64709697-64709716 | Msa0825020:CDS | 50.0% |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr5_3:64704370-64704389 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr5_3:64704367-64704386 | Msa0825020:intron | 55.0% | |
| TAGTGGCTGGGGTTTGAACC+CGG | - | chr5_3:64704421-64704440 | None:intergenic | 55.0% | |
| ! | GCTTCTGCATTGGAGAGTGC+TGG | + | chr5_3:64705582-64705601 | Msa0825020:CDS | 55.0% |
| ATTCCTGCCATTGGCCGCAA+TGG | + | chr5_3:64705842-64705861 | Msa0825020:intron | 55.0% | |
| AGAAGATTACCCCGCCCTTC+TGG | + | chr5_3:64707033-64707052 | Msa0825020:CDS | 55.0% | |
| CTGCAGTATCTGAGTGGCTG+TGG | + | chr5_3:64707137-64707156 | Msa0825020:CDS | 55.0% | |
| TGGCTGTGGAAGCAAAGTGC+AGG | + | chr5_3:64707151-64707170 | Msa0825020:CDS | 55.0% | |
| CTGTGGAAGCAAAGTGCAGG+AGG | + | chr5_3:64707154-64707173 | Msa0825020:CDS | 55.0% | |
| CTTGCAGAGGTCAATGCTGG+TGG | + | chr5_3:64707831-64707850 | Msa0825020:CDS | 55.0% | |
| GCTACAGCCATCCAACACCA+TGG | + | chr5_3:64707858-64707877 | Msa0825020:CDS | 55.0% | |
| CTCGCACCTTTCCATGGTGT+TGG | - | chr5_3:64707872-64707891 | None:intergenic | 55.0% | |
| ! | CACCATGGAAAGGTGCGAGT+TGG | + | chr5_3:64707873-64707892 | Msa0825020:intron | 55.0% |
| AGCCAACTCGCACCTTTCCA+TGG | - | chr5_3:64707878-64707897 | None:intergenic | 55.0% | |
| ! | TCCTTGTCTCCCCATCGGTT+GGG | - | chr5_3:64708566-64708585 | None:intergenic | 55.0% |
| ATCCTTGTCTCCCCATCGGT+TGG | - | chr5_3:64708567-64708586 | None:intergenic | 55.0% | |
| !! | TCAGACAAGTTGGTGGAGGG+TGG | + | chr5_3:64708706-64708725 | Msa0825020:CDS | 55.0% |
| TCGCGAAGCTCACCAACTTG+AGG | - | chr5_3:64708798-64708817 | None:intergenic | 55.0% | |
| !! | AGTTGGTGAGCTTCGCGATG+CGG | + | chr5_3:64708800-64708819 | Msa0825020:CDS | 55.0% |
| TTCGCGATGCGGAGTTTGCA+TGG | + | chr5_3:64708811-64708830 | Msa0825020:CDS | 55.0% | |
| GAGAACACGGGTGGAGGAAG+CGG | - | chr5_3:64703821-64703840 | None:intergenic | 60.0% | |
| TGCACAGAGAACACGGGTGG+AGG | - | chr5_3:64703827-64703846 | None:intergenic | 60.0% | |
| GGTTGCACAGAGAACACGGG+TGG | - | chr5_3:64703830-64703849 | None:intergenic | 60.0% | |
| AGTTCCAGTCCAGGGTGACC+AGG | + | chr5_3:64705216-64705235 | Msa0825020:intron | 60.0% | |
| ACACCATTGCGGCCAATGGC+AGG | - | chr5_3:64705848-64705867 | None:intergenic | 60.0% | |
| GCAGCAGCTCGAATCATGGC+TGG | - | chr5_3:64706694-64706713 | None:intergenic | 60.0% | |
| AAGCGGCCAACCGAATCGTG+TGG | + | chr5_3:64708991-64709010 | Msa0825020:CDS | 60.0% | |
| GAGTCCTGGTCACCCTGGAC+TGG | - | chr5_3:64705223-64705242 | None:intergenic | 65.0% | |
| CTGGTGAGTCCTGGTCACCC+TGG | - | chr5_3:64705228-64705247 | None:intergenic | 65.0% | |
| TCGCGTGAAGCTACGCCGCA+AGG | - | chr5_3:64708166-64708185 | None:intergenic | 65.0% | |
| GCCCAACCGATGGGGAGACA+AGG | + | chr5_3:64708562-64708581 | Msa0825020:CDS | 65.0% | |
| ! | TGGTGGAGGGTGGCTAGCTC+AGG | + | chr5_3:64708716-64708735 | Msa0825020:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 64703741 | 64710146 | 64703741 | ID=Msa0825020;Name=Msa0825020 |
| chr5_3 | mRNA | 64703741 | 64710146 | 64703741 | ID=Msa0825020-mRNA-1;Parent=Msa0825020;Name=Msa0825020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=64|1|1|1|0.91|0.84|13|258|593 |
| chr5_3 | exon | 64703741 | 64703915 | 64703741 | ID=Msa0825020-mRNA-1:exon:20200;Parent=Msa0825020-mRNA-1 |
| chr5_3 | exon | 64704003 | 64704099 | 64704003 | ID=Msa0825020-mRNA-1:exon:20201;Parent=Msa0825020-mRNA-1 |
| chr5_3 | exon | 64705364 | 64705439 | 64705364 | ID=Msa0825020-mRNA-1:exon:20202;Parent=Msa0825020-mRNA-1 |
| chr5_3 | exon | 64705554 | 64705650 | 64705554 | ID=Msa0825020-mRNA-1:exon:20203;Parent=Msa0825020-mRNA-1 |
| chr5_3 | exon | 64706072 | 64706174 | 64706072 | ID=Msa0825020-mRNA-1:exon:20204;Parent=Msa0825020-mRNA-1 |
| chr5_3 | exon | 64706584 | 64706717 | 64706584 | ID=Msa0825020-mRNA-1:exon:20205;Parent=Msa0825020-mRNA-1 |
| chr5_3 | exon | 64707001 | 64707175 | 64707001 | ID=Msa0825020-mRNA-1:exon:20206;Parent=Msa0825020-mRNA-1 |
| chr5_3 | exon | 64707730 | 64707884 | 64707730 | ID=Msa0825020-mRNA-1:exon:20207;Parent=Msa0825020-mRNA-1 |
| chr5_3 | exon | 64708067 | 64708276 | 64708067 | ID=Msa0825020-mRNA-1:exon:20208;Parent=Msa0825020-mRNA-1 |
| chr5_3 | exon | 64708531 | 64708878 | 64708531 | ID=Msa0825020-mRNA-1:exon:20209;Parent=Msa0825020-mRNA-1 |
| chr5_3 | exon | 64708968 | 64709094 | 64708968 | ID=Msa0825020-mRNA-1:exon:20210;Parent=Msa0825020-mRNA-1 |
| chr5_3 | exon | 64709659 | 64709880 | 64709659 | ID=Msa0825020-mRNA-1:exon:20211;Parent=Msa0825020-mRNA-1 |
| chr5_3 | exon | 64709962 | 64710146 | 64709962 | ID=Msa0825020-mRNA-1:exon:20212;Parent=Msa0825020-mRNA-1 |
| chr5_3 | five_prime_UTR | 64703741 | 64703804 | 64703741 | ID=Msa0825020-mRNA-1:five_prime_utr;Parent=Msa0825020-mRNA-1 |
| chr5_3 | CDS | 64703805 | 64703915 | 64703805 | ID=Msa0825020-mRNA-1:cds;Parent=Msa0825020-mRNA-1 |
| chr5_3 | CDS | 64704003 | 64704099 | 64704003 | ID=Msa0825020-mRNA-1:cds;Parent=Msa0825020-mRNA-1 |
| chr5_3 | CDS | 64705364 | 64705439 | 64705364 | ID=Msa0825020-mRNA-1:cds;Parent=Msa0825020-mRNA-1 |
| chr5_3 | CDS | 64705554 | 64705650 | 64705554 | ID=Msa0825020-mRNA-1:cds;Parent=Msa0825020-mRNA-1 |
| chr5_3 | CDS | 64706072 | 64706174 | 64706072 | ID=Msa0825020-mRNA-1:cds;Parent=Msa0825020-mRNA-1 |
| chr5_3 | CDS | 64706584 | 64706717 | 64706584 | ID=Msa0825020-mRNA-1:cds;Parent=Msa0825020-mRNA-1 |
| chr5_3 | CDS | 64707001 | 64707175 | 64707001 | ID=Msa0825020-mRNA-1:cds;Parent=Msa0825020-mRNA-1 |
| chr5_3 | CDS | 64707730 | 64707884 | 64707730 | ID=Msa0825020-mRNA-1:cds;Parent=Msa0825020-mRNA-1 |
| chr5_3 | CDS | 64708067 | 64708276 | 64708067 | ID=Msa0825020-mRNA-1:cds;Parent=Msa0825020-mRNA-1 |
| chr5_3 | CDS | 64708531 | 64708878 | 64708531 | ID=Msa0825020-mRNA-1:cds;Parent=Msa0825020-mRNA-1 |
| chr5_3 | CDS | 64708968 | 64709094 | 64708968 | ID=Msa0825020-mRNA-1:cds;Parent=Msa0825020-mRNA-1 |
| chr5_3 | CDS | 64709659 | 64709807 | 64709659 | ID=Msa0825020-mRNA-1:cds;Parent=Msa0825020-mRNA-1 |
| chr5_3 | three_prime_UTR | 64709808 | 64709880 | 64709808 | ID=Msa0825020-mRNA-1:three_prime_utr;Parent=Msa0825020-mRNA-1 |
| chr5_3 | three_prime_UTR | 64709962 | 64710146 | 64709962 | ID=Msa0825020-mRNA-1:three_prime_utr;Parent=Msa0825020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
