Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0157070 | XP_003590182.1 | 95.302 | 149 | 7 | 0 | 1 | 149 | 1 | 149 | 1.09e-99 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0157070 | G7I6P9 | 95.302 | 149 | 7 | 0 | 1 | 149 | 1 | 149 | 5.19e-100 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0091570 | Msa0157070 | 0.815273 | 1.006194e-51 | -8.615850e-47 |
| Msa0157070 | Msa0344830 | 0.801323 | 9.505955e-49 | -8.615850e-47 |
| Msa0157070 | Msa0562440 | 0.829506 | 4.955487e-55 | -8.615850e-47 |
| Msa0157070 | Msa0693380 | 0.803131 | 4.034587e-49 | -8.615850e-47 |
| Msa0157070 | Msa0843250 | 0.803319 | 3.689221e-49 | -8.615850e-47 |
| Msa0157070 | Msa1012830 | 0.827061 | 1.926519e-54 | -8.615850e-47 |
| Msa0157070 | Msa1074060 | 0.818672 | 1.735029e-52 | -8.615850e-47 |
| Msa0157070 | Msa1271210 | 0.820669 | 6.071071e-53 | -8.615850e-47 |
| Msa0157070 | Msa1420290 | 0.812568 | 3.971250e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0157070 | MtrunA17_Chr1g0168671 | 95.302 | 149 | 7 | 0 | 1 | 149 | 1 | 149 | 9.99e-104 | 293 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0157070 | AT1G04555.1 | 63.889 | 144 | 52 | 0 | 7 | 150 | 5 | 148 | 5.09e-59 | 180 |
| Msa0157070 | AT4G33380.1 | 30.345 | 145 | 90 | 4 | 11 | 148 | 18 | 158 | 1.09e-11 | 61.6 |
Find 58 sgRNAs with CRISPR-Local
Find 513 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCTTCTGGGCTGTTTC+TGG | 0.133948 | 1_4:+24024827 | None:intergenic |
| TCTGCTTCGTGTCTTTCTTC+TGG | 0.172972 | 1_4:+24024816 | None:intergenic |
| TGCTAAGTTAAATTTGTAAT+AGG | 0.243972 | 1_4:-24021828 | Msa0157070:three_prime_UTR |
| CTGCGGTTGATTTGTCTAAA+AGG | 0.245303 | 1_4:-24024790 | Msa0157070:CDS |
| ACTGCTATCTTCCTTCTTCA+TGG | 0.249497 | 1_4:-24028587 | Msa0157070:CDS |
| CTTTGGAGGAATGGCGTAAA+AGG | 0.283674 | 1_4:-24021950 | Msa0157070:CDS |
| CTGCTTCGTGTCTTTCTTCT+GGG | 0.289507 | 1_4:+24024817 | None:intergenic |
| TGATTTGTCTAAAAGGTTAA+AGG | 0.297744 | 1_4:-24024783 | Msa0157070:CDS |
| TAGAATTTGGTGCGGGTGTA+AGG | 0.305116 | 1_4:+24028548 | None:intergenic |
| GCTAAGTTAAATTTGTAATA+GGG | 0.323549 | 1_4:-24021827 | Msa0157070:three_prime_UTR |
| CTTCTGGGCTGTTTCTGGTT+CGG | 0.381648 | 1_4:+24024832 | None:intergenic |
| AGGTCCCACGGCGTGAATAT+AGG | 0.407442 | 1_4:-24028749 | Msa0157070:five_prime_UTR |
| CAAGCTGGCGGCATCGTTCA+AGG | 0.426188 | 1_4:+24024751 | None:intergenic |
| AGCTGAACTCAGTTACATAA+AGG | 0.447507 | 1_4:-24026839 | Msa0157070:CDS |
| TAGAATGGTTGCGTTCTTGA+AGG | 0.467155 | 1_4:+24028631 | None:intergenic |
| GCAAACAAGATCAAGGCATA+TGG | 0.478442 | 1_4:+24021542 | None:intergenic |
| TCGTCTTGCCATGCTTCCAT+TGG | 0.478777 | 1_4:-24026803 | Msa0157070:CDS |
| TATATAAAGTCAAGATTGAG+AGG | 0.480669 | 1_4:+24021878 | None:intergenic |
| AACGATGCCGCCAGCTTGAA+AGG | 0.485394 | 1_4:-24024746 | Msa0157070:intron |
| GAGGGCGAGACAAAGACAAT+TGG | 0.490395 | 1_4:-24021919 | Msa0157070:CDS |
| GATTCTCAGCTTTGGAGGAA+TGG | 0.496368 | 1_4:-24021959 | Msa0157070:intron |
| AGATAGCAGTGATGATATTG+AGG | 0.497537 | 1_4:+24028600 | None:intergenic |
| AAGAAGGAAGGATGTCATTC+CGG | 0.507574 | 1_4:+24021636 | None:intergenic |
| CTTATAAGCAAACAAGATCA+AGG | 0.509621 | 1_4:+24021535 | None:intergenic |
| TGAAGAAGAAGCCATGAAGA+AGG | 0.512694 | 1_4:+24028576 | None:intergenic |
| TTCGTGATTCTCAGCTTTGG+AGG | 0.517039 | 1_4:-24021964 | Msa0157070:intron |
| TGGAGAGAGAGAATAGAGAG+AGG | 0.517440 | 1_4:-24021719 | Msa0157070:three_prime_UTR |
| TTTGTAATAGGGAAGTTAGC+AGG | 0.536752 | 1_4:-24021816 | Msa0157070:three_prime_UTR |
| TGAGAGAGATTGAGCAGGAA+GGG | 0.541006 | 1_4:-24024859 | Msa0157070:CDS |
| TATTAGCTCCAATGGAAGCA+TGG | 0.550102 | 1_4:+24026795 | None:intergenic |
| GAGTTTACAAGAGAGAAAAG+AGG | 0.555516 | 1_4:-24021694 | Msa0157070:intron |
| TACTCTGAAAACACCAACTC+AGG | 0.557029 | 1_4:-24028527 | Msa0157070:intron |
| TCAGGTGAGAGAGATTGAGC+AGG | 0.557629 | 1_4:-24024864 | Msa0157070:intron |
| TTCAGAGTAGAATTTGGTGC+GGG | 0.572068 | 1_4:+24028541 | None:intergenic |
| TGTTGAAAACAAAGAGAGAG+TGG | 0.572542 | 1_4:-24021739 | Msa0157070:three_prime_UTR |
| AAGAGGAAAACCTTTCAAGC+TGG | 0.581024 | 1_4:+24024736 | None:intergenic |
| GAGGGATAACCAACCTGAGT+TGG | 0.581042 | 1_4:+24028514 | None:intergenic |
| GTGAGAGAGATTGAGCAGGA+AGG | 0.582348 | 1_4:-24024860 | Msa0157070:CDS |
| ATTGAGGAAACAGACTAGAA+TGG | 0.583123 | 1_4:+24028616 | None:intergenic |
| ATTTCCTATATTCACGCCGT+GGG | 0.586440 | 1_4:+24028745 | None:intergenic |
| CTTCCATCATAACAAAACAA+TGG | 0.591677 | 1_4:-24028684 | Msa0157070:exon |
| GGTGAAGGTGAGTCACAAGA+AGG | 0.598576 | 1_4:+24021620 | None:intergenic |
| GCATCATCATCGTACCACAT+TGG | 0.606721 | 1_4:-24021769 | Msa0157070:three_prime_UTR |
| TATTTCCTATATTCACGCCG+TGG | 0.612642 | 1_4:+24028744 | None:intergenic |
| CAATGGAGGTACAACAATGG+TGG | 0.614894 | 1_4:-24028667 | Msa0157070:CDS |
| AAAACAAAACGAGAAGGTGA+AGG | 0.616029 | 1_4:+24021605 | None:intergenic |
| AAGGTGAGTCACAAGAAGGA+AGG | 0.616323 | 1_4:+24021624 | None:intergenic |
| AGGAAAACCTTTCAAGCTGG+CGG | 0.625675 | 1_4:+24024739 | None:intergenic |
| ATACAAGAAGCAAGGTCCCA+CGG | 0.647428 | 1_4:-24028761 | Msa0157070:five_prime_UTR |
| CCATCATAACAAAACAATGG+AGG | 0.656370 | 1_4:-24028681 | Msa0157070:exon |
| GATGGACGATACAAGAAGCA+AGG | 0.656528 | 1_4:-24028769 | None:intergenic |
| TTTCAGAGTAGAATTTGGTG+CGG | 0.658566 | 1_4:+24028540 | None:intergenic |
| GGCGTAAAAGGAAAATCGAG+AGG | 0.668939 | 1_4:-24021938 | Msa0157070:CDS |
| ATAAAGTCAAGATTGAGAGG+AGG | 0.675762 | 1_4:+24021881 | None:intergenic |
| AAACAATGGAGGTACAACAA+TGG | 0.689953 | 1_4:-24028670 | Msa0157070:exon |
| GCGTAAAAGGAAAATCGAGA+GGG | 0.690961 | 1_4:-24021937 | Msa0157070:CDS |
| AGACACGAAGCAGACAGCTG+CGG | 0.704640 | 1_4:-24024807 | Msa0157070:CDS |
| TTCAACATAAGAGTCCAATG+TGG | 0.760378 | 1_4:+24021755 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTCTTTTTTTTTTTTTT+TGG | - | chr1_4:24021924-24021943 | Msa0157070:CDS | 10.0% |
| !!! | ATGTCTTTTTTTTTTTTTTT+GGG | - | chr1_4:24021925-24021944 | Msa0157070:CDS | 10.0% |
| !!! | AATTTTATTTTTAGGAAATA+GGG | + | chr1_4:24025638-24025657 | None:intergenic | 10.0% |
| !!! | TAATTTTATTTTTAGGAAAT+AGG | + | chr1_4:24025639-24025658 | None:intergenic | 10.0% |
| !!! | ATTGTTACTTTTTTTTTAAA+GGG | + | chr1_4:24025858-24025877 | None:intergenic | 10.0% |
| !!! | TATTGTTACTTTTTTTTTAA+AGG | + | chr1_4:24025859-24025878 | None:intergenic | 10.0% |
| !! | TAAAAACAAAAAAAAAAAGT+TGG | - | chr1_4:24026691-24026710 | Msa0157070:intron | 10.0% |
| !!! | CATTTTGAAATAATTTTTTT+TGG | + | chr1_4:24027007-24027026 | None:intergenic | 10.0% |
| !!! | GGTTTTTAAAAATTATAAAA+TGG | - | chr1_4:24027612-24027631 | Msa0157070:intron | 10.0% |
| !!! | AGTCATTTTATTAAAAAAAT+AGG | + | chr1_4:24027664-24027683 | None:intergenic | 10.0% |
| !!! | AAATTTACAATTTTGATATT+TGG | - | chr1_4:24027849-24027868 | Msa0157070:intron | 10.0% |
| !!! | TCTTTATATGTATAATTTTT+AGG | + | chr1_4:24028708-24028727 | None:intergenic | 10.0% |
| !!! | AATTGTTTAAAACTATTTTG+CGG | - | chr1_4:24023523-24023542 | Msa0157070:intron | 15.0% |
| !!! | TACATTTTAATTCAAGTTAA+CGG | + | chr1_4:24023641-24023660 | None:intergenic | 15.0% |
| !! | TCCTAAAAATAAAATTATTC+AGG | - | chr1_4:24025642-24025661 | Msa0157070:intron | 15.0% |
| !!! | TCCTGAATAATTTTATTTTT+AGG | + | chr1_4:24025646-24025665 | None:intergenic | 15.0% |
| !! | TATTAACAATGATAAATTGA+AGG | - | chr1_4:24025899-24025918 | Msa0157070:intron | 15.0% |
| !! | ATTAACAATGATAAATTGAA+GGG | - | chr1_4:24025900-24025919 | Msa0157070:intron | 15.0% |
| !! | ATTAAACATAAGAAAATTGA+CGG | - | chr1_4:24025951-24025970 | Msa0157070:intron | 15.0% |
| !!! | TTTTTTTTGTTTTTAAACCT+TGG | + | chr1_4:24026686-24026705 | None:intergenic | 15.0% |
| !! | ATAAGAAACTATATTACATA+CGG | - | chr1_4:24026928-24026947 | Msa0157070:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr1_4:24027110-24027129 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr1_4:24027134-24027153 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr1_4:24027133-24027152 | Msa0157070:intron | 15.0% |
| !!! | ATGAATTTTAAATATTTAGC+TGG | + | chr1_4:24027822-24027841 | None:intergenic | 15.0% |
| !!! | GCTAAATATTTAAAATTCAT+TGG | - | chr1_4:24027822-24027841 | Msa0157070:intron | 15.0% |
| !!! | GAATTTTGATTGCTAATTAT+TGG | - | chr1_4:24022221-24022240 | Msa0157070:intron | 20.0% |
| !!! | GTTATTTTCTCGTAATTTTT+TGG | + | chr1_4:24022910-24022929 | None:intergenic | 20.0% |
| !! | ATCTCCTTAAAATTTGAATT+GGG | + | chr1_4:24024019-24024038 | None:intergenic | 20.0% |
| !! | TATCTCCTTAAAATTTGAAT+TGG | + | chr1_4:24024020-24024039 | None:intergenic | 20.0% |
| !! | ATCATCTTAGAATTTAGATT+GGG | + | chr1_4:24024201-24024220 | None:intergenic | 20.0% |
| !! | TATCATCTTAGAATTTAGAT+TGG | + | chr1_4:24024202-24024221 | None:intergenic | 20.0% |
| !!! | ATCATGTTTTTATGTTTCTT+GGG | + | chr1_4:24024407-24024426 | None:intergenic | 20.0% |
| !!! | AATCATGTTTTTATGTTTCT+TGG | + | chr1_4:24024408-24024427 | None:intergenic | 20.0% |
| !! | ATATTAAGTATTTGACTACA+TGG | + | chr1_4:24024454-24024473 | None:intergenic | 20.0% |
| !! | GATTAATAATTATAGCAACA+AGG | + | chr1_4:24024579-24024598 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAGAGAAAACAG+AGG | + | chr1_4:24024897-24024916 | None:intergenic | 20.0% |
| !! | AAGCATGTTAGATATAAATT+GGG | + | chr1_4:24025187-24025206 | None:intergenic | 20.0% |
| !! | TAAGCATGTTAGATATAAAT+TGG | + | chr1_4:24025188-24025207 | None:intergenic | 20.0% |
| !! | TAAAAATTAGTTAGTAAGCA+GGG | + | chr1_4:24025223-24025242 | None:intergenic | 20.0% |
| !! | ATAAAAAATGGTTATGAGTA+AGG | + | chr1_4:24025582-24025601 | None:intergenic | 20.0% |
| !! | AAATAATTACTAAAACTCGT+TGG | + | chr1_4:24025676-24025695 | None:intergenic | 20.0% |
| !!! | TAATTAGTGTTGTTTGTAAT+AGG | - | chr1_4:24025779-24025798 | Msa0157070:intron | 20.0% |
| !!! | AATTAGTGTTGTTTGTAATA+GGG | - | chr1_4:24025780-24025799 | Msa0157070:intron | 20.0% |
| !!! | ATTTTTGTTTGAATGCTTAT+AGG | - | chr1_4:24025808-24025827 | Msa0157070:intron | 20.0% |
| !! | TTAAACATAAGAAAATTGAC+GGG | - | chr1_4:24025952-24025971 | Msa0157070:intron | 20.0% |
| !! | TTTACAGATAAATATACAAG+TGG | + | chr1_4:24026156-24026175 | None:intergenic | 20.0% |
| !! | ACTTGTATATTTATCTGTAA+AGG | - | chr1_4:24026155-24026174 | Msa0157070:intron | 20.0% |
| !! | TTGTGAAAACATTTGAAAAA+TGG | - | chr1_4:24026226-24026245 | Msa0157070:intron | 20.0% |
| !!! | ATTTTTTAGGAGTGATATAA+TGG | - | chr1_4:24026899-24026918 | Msa0157070:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr1_4:24027047-24027066 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr1_4:24027124-24027143 | Msa0157070:intron | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | + | chr1_4:24027167-24027186 | None:intergenic | 20.0% |
| !! | CAATAAATGCTCAATTATAT+AGG | - | chr1_4:24027366-24027385 | Msa0157070:intron | 20.0% |
| !! | TTAAAAAAATAGGTCATGAT+TGG | + | chr1_4:24027654-24027673 | None:intergenic | 20.0% |
| !! | AATAAATTCATGTAAGTTCA+AGG | + | chr1_4:24027945-24027964 | None:intergenic | 20.0% |
| !! | TATTATGATGTCATGATATT+TGG | - | chr1_4:24028145-24028164 | Msa0157070:intron | 20.0% |
| !! | TGCTAAGTTAAATTTGTAAT+AGG | - | chr1_4:24028451-24028470 | Msa0157070:intron | 20.0% |
| !! | GCTAAGTTAAATTTGTAATA+GGG | - | chr1_4:24028452-24028471 | Msa0157070:intron | 20.0% |
| ! | AGAGAAAAAAAAAGAGAAGA+TGG | + | chr1_4:24021795-24021814 | None:intergenic | 25.0% |
| !! | AAGTTCTAGTACAAAAAATG+TGG | + | chr1_4:24021825-24021844 | None:intergenic | 25.0% |
| ! | TAGAACTTCAAATCAATCAT+GGG | - | chr1_4:24021837-24021856 | Msa0157070:three_prime_UTR | 25.0% |
| !!! | CGAGTTTTTTTTTTCCTTTT+GGG | - | chr1_4:24021892-24021911 | Msa0157070:CDS | 25.0% |
| !!! | GAGTTTTTTTTTTCCTTTTG+GGG | - | chr1_4:24021893-24021912 | Msa0157070:CDS | 25.0% |
| !!! | AGTTTTTTTTTTCCTTTTGG+GGG | - | chr1_4:24021894-24021913 | Msa0157070:CDS | 25.0% |
| ! | TTGTTAGATTGTGATTTAGT+AGG | - | chr1_4:24022023-24022042 | Msa0157070:intron | 25.0% |
| ! | AAAGTTCATCACTTAAACTA+AGG | + | chr1_4:24022577-24022596 | None:intergenic | 25.0% |
| !! | ATTTTTGTTACTAGAGAGAA+AGG | - | chr1_4:24022633-24022652 | Msa0157070:intron | 25.0% |
| ! | TTACGAGAAAATAACATTAG+AGG | - | chr1_4:24022915-24022934 | Msa0157070:intron | 25.0% |
| !!! | AAACATTCTATTTTGAGCAT+TGG | - | chr1_4:24023301-24023320 | Msa0157070:intron | 25.0% |
| !!! | AACATTCTATTTTGAGCATT+GGG | - | chr1_4:24023302-24023321 | Msa0157070:intron | 25.0% |
| !!! | CATATACAAAGTCATTTTTC+TGG | - | chr1_4:24023661-24023680 | Msa0157070:intron | 25.0% |
| ! | GAAATTACTTAATGATTTCC+AGG | + | chr1_4:24023711-24023730 | None:intergenic | 25.0% |
| !! | ACAATTGAAAAGTATGATGT+TGG | + | chr1_4:24023817-24023836 | None:intergenic | 25.0% |
| !!! | TTGTTTTATTCTACAGTGAT+TGG | - | chr1_4:24023894-24023913 | Msa0157070:intron | 25.0% |
| !! | TAAGCCCAATTCAAATTTTA+AGG | - | chr1_4:24024012-24024031 | Msa0157070:intron | 25.0% |
| ! | TTAAGGAGATATCATAATCT+TGG | - | chr1_4:24024029-24024048 | Msa0157070:intron | 25.0% |
| ! | TAGATTAGTAGAATCATGTT+AGG | - | chr1_4:24024175-24024194 | Msa0157070:intron | 25.0% |
| ! | ACATGAATAGTAGTTATAAC+TGG | - | chr1_4:24024335-24024354 | Msa0157070:intron | 25.0% |
| !!! | TAATATTCCATTTGCTATGT+AGG | - | chr1_4:24024468-24024487 | Msa0157070:intron | 25.0% |
| ! | TATATATCCTACATAGCAAA+TGG | + | chr1_4:24024478-24024497 | None:intergenic | 25.0% |
| ! | AGAATATAGAGGAAAAACAA+AGG | + | chr1_4:24024986-24025005 | None:intergenic | 25.0% |
| ! | GAAATAAACAGAGAATATAG+AGG | + | chr1_4:24024997-24025016 | None:intergenic | 25.0% |
| ! | AGCATGTTAGATATAAATTG+GGG | + | chr1_4:24025186-24025205 | None:intergenic | 25.0% |
| ! | GTAAAAATTAGTTAGTAAGC+AGG | + | chr1_4:24025224-24025243 | None:intergenic | 25.0% |
| ! | TTCCTATAATAGATTCACAA+TGG | - | chr1_4:24025278-24025297 | Msa0157070:intron | 25.0% |
| ! | TCCTATAATAGATTCACAAT+GGG | - | chr1_4:24025279-24025298 | Msa0157070:intron | 25.0% |
| ! | CATTCCAAAAAAACAAAACT+TGG | + | chr1_4:24025358-24025377 | None:intergenic | 25.0% |
| !! | TGATTTGTCTAAAAGGTTAA+AGG | - | chr1_4:24025496-24025515 | Msa0157070:intron | 25.0% |
| ! | CTGTGTTTGCAAATAAAAAA+TGG | + | chr1_4:24025594-24025613 | None:intergenic | 25.0% |
| ! | TAAACATAAGAAAATTGACG+GGG | - | chr1_4:24025953-24025972 | Msa0157070:intron | 25.0% |
| ! | TTTCTCAAAAAACAAAGGTA+CGG | - | chr1_4:24026049-24026068 | Msa0157070:intron | 25.0% |
| !! | TTCACAAAGTACTAATACTA+GGG | + | chr1_4:24026213-24026232 | None:intergenic | 25.0% |
| !! | TTTCACAAAGTACTAATACT+AGG | + | chr1_4:24026214-24026233 | None:intergenic | 25.0% |
| !! | GCTTTTATAGAATACGAAAA+AGG | - | chr1_4:24026355-24026374 | Msa0157070:intron | 25.0% |
| ! | AGATAAGAAGATACAAGAAA+AGG | - | chr1_4:24026379-24026398 | Msa0157070:intron | 25.0% |
| !!! | CTTTTTTTCTTGAGAAAATG+AGG | + | chr1_4:24026620-24026639 | None:intergenic | 25.0% |
| !! | CTCATTTTCTCAAGAAAAAA+AGG | - | chr1_4:24026618-24026637 | Msa0157070:intron | 25.0% |
| !!! | TTTGTTTTTAAACCTTGGTA+CGG | + | chr1_4:24026681-24026700 | None:intergenic | 25.0% |
| !!! | AGTCGATTTTTGCATTTTTT+AGG | - | chr1_4:24026886-24026905 | Msa0157070:intron | 25.0% |
| ! | ATAGTGTAATATGAGCAAAA+TGG | + | chr1_4:24027397-24027416 | None:intergenic | 25.0% |
| !! | TAGTTGCAAAAGAGAATTTT+TGG | - | chr1_4:24027590-24027609 | Msa0157070:intron | 25.0% |
| !! | AGTTGCAAAAGAGAATTTTT+GGG | - | chr1_4:24027591-24027610 | Msa0157070:intron | 25.0% |
| ! | CATTCTTGTATTAAGCAAAA+CGG | - | chr1_4:24027709-24027728 | Msa0157070:intron | 25.0% |
| ! | TTTAGCTGGAAGAAATATAT+AGG | + | chr1_4:24027808-24027827 | None:intergenic | 25.0% |
| ! | TCTAAATTTATATGCGTGAA+GGG | + | chr1_4:24027915-24027934 | None:intergenic | 25.0% |
| ! | TTCTAAATTTATATGCGTGA+AGG | + | chr1_4:24027916-24027935 | None:intergenic | 25.0% |
| ! | CGTTTAATCCAACAAATATT+TGG | + | chr1_4:24028052-24028071 | None:intergenic | 25.0% |
| ! | ATTAAAACCAATGTCAATAC+AGG | + | chr1_4:24028283-24028302 | None:intergenic | 25.0% |
| ! | TATATAAAGTCAAGATTGAG+AGG | + | chr1_4:24028404-24028423 | None:intergenic | 25.0% |
| ! | AAAGAAAAAACAAAACGAGA+AGG | + | chr1_4:24028683-24028702 | None:intergenic | 25.0% |
| !! | CATTGTTTTGTTATGATGGA+AGG | + | chr1_4:24021597-24021616 | None:intergenic | 30.0% |
| CTTCCATCATAACAAAACAA+TGG | - | chr1_4:24021595-24021614 | Msa0157070:three_prime_UTR | 30.0% | |
| CTAGAACTTCAAATCAATCA+TGG | - | chr1_4:24021836-24021855 | Msa0157070:three_prime_UTR | 30.0% | |
| !!! | GCGAGTTTTTTTTTTCCTTT+TGG | - | chr1_4:24021891-24021910 | Msa0157070:CDS | 30.0% |
| !! | TTTTGGGTGATTTGATTATG+AGG | - | chr1_4:24021941-24021960 | Msa0157070:CDS | 30.0% |
| GTGATTTGATTATGAGGTAA+AGG | - | chr1_4:24021947-24021966 | Msa0157070:CDS | 30.0% | |
| ATTTGATTATGAGGTAAAGG+AGG | - | chr1_4:24021950-24021969 | Msa0157070:CDS | 30.0% | |
| AAAGTCACTAGCATTTAAGT+TGG | + | chr1_4:24022093-24022112 | None:intergenic | 30.0% | |
| ! | TGCTAGTGACTTTTTGTATT+TGG | - | chr1_4:24022100-24022119 | Msa0157070:intron | 30.0% |
| TTAGGATTGTGAATTTGAGT+TGG | - | chr1_4:24022136-24022155 | Msa0157070:intron | 30.0% | |
| !! | ATTGTGAATTTGAGTTGGAT+TGG | - | chr1_4:24022141-24022160 | Msa0157070:intron | 30.0% |
| TGAGAGTAAATTAAGCATAG+TGG | - | chr1_4:24022302-24022321 | Msa0157070:intron | 30.0% | |
| AAGACTAGACATGATAGAAT+TGG | - | chr1_4:24022354-24022373 | Msa0157070:intron | 30.0% | |
| AATTGGAAATAGTAGAGAGT+TGG | - | chr1_4:24022371-24022390 | Msa0157070:intron | 30.0% | |
| ATTGGAAATAGTAGAGAGTT+GGG | - | chr1_4:24022372-24022391 | Msa0157070:intron | 30.0% | |
| ACAGTTATTGTTTGCAGATT+GGG | + | chr1_4:24022856-24022875 | None:intergenic | 30.0% | |
| AACAGTTATTGTTTGCAGAT+TGG | + | chr1_4:24022857-24022876 | None:intergenic | 30.0% | |
| !!! | ATTTTTTGGAGTCATAACAG+CGG | + | chr1_4:24022896-24022915 | None:intergenic | 30.0% |
| GAACAATCATAAAGATGCTA+AGG | - | chr1_4:24022975-24022994 | Msa0157070:intron | 30.0% | |
| GATAAATGAAAGACAAGGAA+TGG | + | chr1_4:24023107-24023126 | None:intergenic | 30.0% | |
| ACACAGATAAATGAAAGACA+AGG | + | chr1_4:24023112-24023131 | None:intergenic | 30.0% | |
| TATTTAACTCATAGCATGCT+TGG | - | chr1_4:24023151-24023170 | Msa0157070:intron | 30.0% | |
| TTCTTAATCCTATACGTAAC+AGG | + | chr1_4:24023228-24023247 | None:intergenic | 30.0% | |
| ACACAACTTATAAATGACAC+TGG | - | chr1_4:24023331-24023350 | Msa0157070:intron | 30.0% | |
| ! | ACTCTTTTTATTAGCTCCAA+TGG | + | chr1_4:24023495-24023514 | None:intergenic | 30.0% |
| AGTTAACGGTAATGAGTATA+AGG | + | chr1_4:24023627-24023646 | None:intergenic | 30.0% | |
| !!! | GCTGAATTTTTTTTGTTTCC+TGG | - | chr1_4:24023690-24023709 | Msa0157070:intron | 30.0% |
| GTTCACACTTCAAATATCTT+TGG | - | chr1_4:24024080-24024099 | Msa0157070:intron | 30.0% | |
| GGCATATTAATTTCCAATGT+GGG | + | chr1_4:24024129-24024148 | None:intergenic | 30.0% | |
| TAATCTATAACCACTACTCA+GGG | + | chr1_4:24024150-24024169 | None:intergenic | 30.0% | |
| ATAATCTATAACCACTACTC+AGG | + | chr1_4:24024151-24024170 | None:intergenic | 30.0% | |
| AAATTTCTTTGAGTGTGAGA+AGG | - | chr1_4:24024281-24024300 | Msa0157070:intron | 30.0% | |
| !! | TGTTTTTATGTTTCTTGGGT+TGG | + | chr1_4:24024403-24024422 | None:intergenic | 30.0% |
| TTATATTAGCCAATTAGCCA+AGG | - | chr1_4:24024646-24024665 | Msa0157070:intron | 30.0% | |
| ATCAAGGACATTAACATGAA+AGG | + | chr1_4:24024712-24024731 | None:intergenic | 30.0% | |
| TTGATTCTCTTCTTCTTGAA+GGG | - | chr1_4:24024727-24024746 | Msa0157070:intron | 30.0% | |
| CAAAAAAACAGAGGAAATAG+AGG | + | chr1_4:24024956-24024975 | None:intergenic | 30.0% | |
| !!! | ATTTCCTCTGTTTTTTTGCT+TGG | - | chr1_4:24024958-24024977 | Msa0157070:intron | 30.0% |
| CATAACATATCGGTAAGATA+AGG | - | chr1_4:24025254-24025273 | Msa0157070:intron | 30.0% | |
| ACCCATTGTGAATCTATTAT+AGG | + | chr1_4:24025283-24025302 | None:intergenic | 30.0% | |
| !!! | AGCACCAAGTTTTGTTTTTT+TGG | - | chr1_4:24025351-24025370 | Msa0157070:intron | 30.0% |
| AGTCCATTCAATTTGGATTA+TGG | - | chr1_4:24025927-24025946 | Msa0157070:intron | 30.0% | |
| GTCCATTCAATTTGGATTAT+GGG | - | chr1_4:24025928-24025947 | Msa0157070:intron | 30.0% | |
| ATCCCATAATCCAAATTGAA+TGG | + | chr1_4:24025933-24025952 | None:intergenic | 30.0% | |
| CGACATTTCTCAAAAAACAA+AGG | - | chr1_4:24026044-24026063 | Msa0157070:intron | 30.0% | |
| ! | TTCTCAAAAAACAAAGGTAC+GGG | - | chr1_4:24026050-24026069 | Msa0157070:intron | 30.0% |
| GATAAATATACAAGTGGAAC+TGG | + | chr1_4:24026150-24026169 | None:intergenic | 30.0% | |
| ! | TCACAAAGTACTAATACTAG+GGG | + | chr1_4:24026212-24026231 | None:intergenic | 30.0% |
| !! | GTACGTATATTTTTGCATGA+GGG | - | chr1_4:24026261-24026280 | Msa0157070:intron | 30.0% |
| GCTAGTATAGAATACGAAAA+AGG | - | chr1_4:24026324-24026343 | Msa0157070:intron | 30.0% | |
| GTATAGAATACGAAAAAGGA+AGG | - | chr1_4:24026328-24026347 | Msa0157070:intron | 30.0% | |
| ! | TTTTCTTCTTCTGCAACTAT+TGG | - | chr1_4:24026416-24026435 | Msa0157070:intron | 30.0% |
| TATTGGCAAACAAGAAAAAG+TGG | - | chr1_4:24026433-24026452 | Msa0157070:intron | 30.0% | |
| !! | AAAAAAAAGTTGGTGCATCA+TGG | - | chr1_4:24026701-24026720 | Msa0157070:intron | 30.0% |
| !! | AAAAAAAGTTGGTGCATCAT+GGG | - | chr1_4:24026702-24026721 | Msa0157070:intron | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr1_4:24027215-24027234 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr1_4:24027216-24027235 | Msa0157070:intron | 30.0% |
| ATATTGCCCAAAATATTAGG+GGG | + | chr1_4:24027277-24027296 | None:intergenic | 30.0% | |
| GATATTGCCCAAAATATTAG+GGG | + | chr1_4:24027278-24027297 | None:intergenic | 30.0% | |
| GGATATTGCCCAAAATATTA+GGG | + | chr1_4:24027279-24027298 | None:intergenic | 30.0% | |
| TGGATATTGCCCAAAATATT+AGG | + | chr1_4:24027280-24027299 | None:intergenic | 30.0% | |
| TTAAACGATGTCGTGATATT+TGG | - | chr1_4:24028065-24028084 | Msa0157070:intron | 30.0% | |
| ! | TGTTCTTCTTTCTAAAGACA+TGG | + | chr1_4:24028099-24028118 | None:intergenic | 30.0% |
| ! | TCTTTAGAAAGAAGAACAAC+TGG | - | chr1_4:24028101-24028120 | Msa0157070:intron | 30.0% |
| CAAAGACAATTGGAGAAAAA+TGG | - | chr1_4:24028370-24028389 | Msa0157070:intron | 30.0% | |
| CTTATAAGCAAACAAGATCA+AGG | + | chr1_4:24028747-24028766 | None:intergenic | 30.0% | |
| !! | CCTCCATTGTTTTGTTATGA+TGG | + | chr1_4:24021601-24021620 | None:intergenic | 35.0% |
| CCATCATAACAAAACAATGG+AGG | - | chr1_4:24021598-24021617 | Msa0157070:three_prime_UTR | 35.0% | |
| ! | AAACAATGGAGGTACAACAA+TGG | - | chr1_4:24021609-24021628 | Msa0157070:three_prime_UTR | 35.0% |
| ATTGAGGAAACAGACTAGAA+TGG | + | chr1_4:24021666-24021685 | None:intergenic | 35.0% | |
| AGATAGCAGTGATGATATTG+AGG | + | chr1_4:24021682-24021701 | None:intergenic | 35.0% | |
| ! | TTTCAGAGTAGAATTTGGTG+CGG | + | chr1_4:24021742-24021761 | None:intergenic | 35.0% |
| ! | GGTGTTTTCAGAGTAGAATT+TGG | + | chr1_4:24021747-24021766 | None:intergenic | 35.0% |
| AAAAGAGAAGATGGAGAAGA+GGG | + | chr1_4:24021786-24021805 | None:intergenic | 35.0% | |
| AAAAAGAGAAGATGGAGAAG+AGG | + | chr1_4:24021787-24021806 | None:intergenic | 35.0% | |
| GTAAAGGAGGTTGAATTTGT+TGG | - | chr1_4:24021963-24021982 | Msa0157070:intron | 35.0% | |
| !! | TTTGGTGCTTCTTAGACTTT+AGG | - | chr1_4:24022118-24022137 | Msa0157070:intron | 35.0% |
| !! | TGTTTGCTATGACAAAGTGT+TGG | - | chr1_4:24022262-24022281 | Msa0157070:intron | 35.0% |
| !! | GTTTGCTATGACAAAGTGTT+GGG | - | chr1_4:24022263-24022282 | Msa0157070:intron | 35.0% |
| TTGGAAATAGTAGAGAGTTG+GGG | - | chr1_4:24022373-24022392 | Msa0157070:intron | 35.0% | |
| AGTACATATCGTGGAAAAGA+TGG | - | chr1_4:24022397-24022416 | Msa0157070:intron | 35.0% | |
| TGGAAAAGATGGTACAAACT+CGG | - | chr1_4:24022408-24022427 | Msa0157070:intron | 35.0% | |
| AGAAGACTCGTAGATTATGA+CGG | - | chr1_4:24022455-24022474 | Msa0157070:intron | 35.0% | |
| TGAACTAGTGACTAATGTGT+CGG | - | chr1_4:24022596-24022615 | Msa0157070:intron | 35.0% | |
| TTCTCAGCGTTGTCAAATAT+CGG | - | chr1_4:24022696-24022715 | Msa0157070:intron | 35.0% | |
| ! | GAAATTTTTGACAACTGCCA+CGG | - | chr1_4:24022750-24022769 | Msa0157070:intron | 35.0% |
| CAGTTATTGTTTGCAGATTG+GGG | + | chr1_4:24022855-24022874 | None:intergenic | 35.0% | |
| TGTTCCATGATCTTGCATTA+TGG | + | chr1_4:24022960-24022979 | None:intergenic | 35.0% | |
| TCATTTATCTGTGTGAAGCA+TGG | - | chr1_4:24023118-24023137 | Msa0157070:intron | 35.0% | |
| GAATCTTTGATACCATGTCA+TGG | - | chr1_4:24023179-24023198 | Msa0157070:intron | 35.0% | |
| ! | ACGTAACAGGTAAAGCATTT+CGG | + | chr1_4:24023215-24023234 | None:intergenic | 35.0% |
| ATGCTTTACCTGTTACGTAT+AGG | - | chr1_4:24023217-24023236 | Msa0157070:intron | 35.0% | |
| AGCTGAACTCAGTTACATAA+AGG | - | chr1_4:24023440-24023459 | Msa0157070:intron | 35.0% | |
| TCTTCAGTTAATCCTCTAGT+TGG | - | chr1_4:24023556-24023575 | Msa0157070:intron | 35.0% | |
| TTGATTGTGAAGTCAGTTGA+CGG | - | chr1_4:24023732-24023751 | Msa0157070:intron | 35.0% | |
| GTTAATGTCAATGTCTGTCA+TGG | + | chr1_4:24023784-24023803 | None:intergenic | 35.0% | |
| CTCTTATTCGACTATGTTTG+GGG | + | chr1_4:24023859-24023878 | None:intergenic | 35.0% | |
| CCTCTTATTCGACTATGTTT+GGG | + | chr1_4:24023860-24023879 | None:intergenic | 35.0% | |
| CCAAACATAGTCGAATAAGA+GGG | - | chr1_4:24023858-24023877 | Msa0157070:intron | 35.0% | |
| GCAATATCACTTTCCAATGT+GGG | + | chr1_4:24023947-24023966 | None:intergenic | 35.0% | |
| AGCAATATCACTTTCCAATG+TGG | + | chr1_4:24023948-24023967 | None:intergenic | 35.0% | |
| GGAAAGTGATATTGCTTGAA+TGG | - | chr1_4:24023952-24023971 | Msa0157070:intron | 35.0% | |
| ! | TCAAATATCTTTGGCACTGA+AGG | - | chr1_4:24024089-24024108 | Msa0157070:intron | 35.0% |
| ! | CAAATATCTTTGGCACTGAA+GGG | - | chr1_4:24024090-24024109 | Msa0157070:intron | 35.0% |
| ! | AAATATCTTTGGCACTGAAG+GGG | - | chr1_4:24024091-24024110 | Msa0157070:intron | 35.0% |
| GGGCATATTAATTTCCAATG+TGG | + | chr1_4:24024130-24024149 | None:intergenic | 35.0% | |
| AATTAATATGCCCTGAGTAG+TGG | - | chr1_4:24024137-24024156 | Msa0157070:intron | 35.0% | |
| ! | TGGCTCAACAAATCTAGAAT+AGG | + | chr1_4:24024231-24024250 | None:intergenic | 35.0% |
| CATGTCATCATTATCCAATG+TGG | + | chr1_4:24024320-24024339 | None:intergenic | 35.0% | |
| !!! | TCACTAACAGGTTGATTTTG+TGG | - | chr1_4:24024364-24024383 | Msa0157070:intron | 35.0% |
| !!! | CACTAACAGGTTGATTTTGT+GGG | - | chr1_4:24024365-24024384 | Msa0157070:intron | 35.0% |
| !!! | ACTAACAGGTTGATTTTGTG+GGG | - | chr1_4:24024366-24024385 | Msa0157070:intron | 35.0% |
| ! | TGATTTTGTGGGGTTGAATT+AGG | - | chr1_4:24024376-24024395 | Msa0157070:intron | 35.0% |
| !! | ACATGGTGATGGGAATTATT+TGG | + | chr1_4:24024437-24024456 | None:intergenic | 35.0% |
| GTATTTGACTACATGGTGAT+GGG | + | chr1_4:24024447-24024466 | None:intergenic | 35.0% | |
| AGTATTTGACTACATGGTGA+TGG | + | chr1_4:24024448-24024467 | None:intergenic | 35.0% | |
| GAGTCTACATTTAGACATCA+TGG | - | chr1_4:24024505-24024524 | Msa0157070:intron | 35.0% | |
| TCATGGTAACTGTTCAGTAT+TGG | - | chr1_4:24024522-24024541 | Msa0157070:intron | 35.0% | |
| TGAAAAGTTCCTTGGCTAAT+TGG | + | chr1_4:24024658-24024677 | None:intergenic | 35.0% | |
| TGAGAGTTTGAAAAGTTCCT+TGG | + | chr1_4:24024666-24024685 | None:intergenic | 35.0% | |
| ! | AAGGAACTTTTCAAACTCTC+AGG | - | chr1_4:24024665-24024684 | Msa0157070:intron | 35.0% |
| GAAAGGTCAAAAACAAACCT+TGG | + | chr1_4:24024695-24024714 | None:intergenic | 35.0% | |
| CTTCAAGAAGAAGAGAATCA+AGG | + | chr1_4:24024728-24024747 | None:intergenic | 35.0% | |
| CTTGATTCTCTTCTTCTTGA+AGG | - | chr1_4:24024726-24024745 | Msa0157070:intron | 35.0% | |
| TCTTAAGATTCTATGTGCCA+CGG | - | chr1_4:24024802-24024821 | Msa0157070:CDS | 35.0% | |
| AAAACAGAGCAAAAACGAAC+TGG | + | chr1_4:24024854-24024873 | None:intergenic | 35.0% | |
| AGAAAACAGAGGAAAAACAG+TGG | + | chr1_4:24024886-24024905 | None:intergenic | 35.0% | |
| AGGAAATAGAGGAAAAACAG+AGG | + | chr1_4:24024945-24024964 | None:intergenic | 35.0% | |
| !! | TCGTTTTTACGTTCCTTAAC+CGG | - | chr1_4:24025070-24025089 | Msa0157070:intron | 35.0% |
| TAGATATAAATTGGGGCCTT+CGG | + | chr1_4:24025179-24025198 | None:intergenic | 35.0% | |
| TCCCTCATCTCATAACATAT+CGG | - | chr1_4:24025244-24025263 | Msa0157070:intron | 35.0% | |
| ACCGATATGTTATGAGATGA+GGG | + | chr1_4:24025248-24025267 | None:intergenic | 35.0% | |
| TACCGATATGTTATGAGATG+AGG | + | chr1_4:24025249-24025268 | None:intergenic | 35.0% | |
| AAGGTATGTAGGGAAAAAAG+AGG | + | chr1_4:24025563-24025582 | None:intergenic | 35.0% | |
| GGTTATGAGTAAGGTATGTA+GGG | + | chr1_4:24025573-24025592 | None:intergenic | 35.0% | |
| TGGTTATGAGTAAGGTATGT+AGG | + | chr1_4:24025574-24025593 | None:intergenic | 35.0% | |
| TTACAGATCCTTGTCTGATA+CGG | + | chr1_4:24025762-24025781 | None:intergenic | 35.0% | |
| ! | AGACAATGATTTTCCTCTCA+AGG | + | chr1_4:24026121-24026140 | None:intergenic | 35.0% |
| !! | CGTACGTATATTTTTGCATG+AGG | - | chr1_4:24026260-24026279 | Msa0157070:intron | 35.0% |
| !! | GTATATTTTTGCATGAGGGA+AGG | - | chr1_4:24026265-24026284 | Msa0157070:intron | 35.0% |
| GAATACGAAAAAGGAAGGAT+TGG | - | chr1_4:24026333-24026352 | Msa0157070:intron | 35.0% | |
| CAACAACATTTACTAGACTC+TGG | + | chr1_4:24026482-24026501 | None:intergenic | 35.0% | |
| GAGTCTAGTAAATGTTGTTG+TGG | - | chr1_4:24026482-24026501 | Msa0157070:intron | 35.0% | |
| !!! | GACACTCATTTTGAAACGAA+GGG | + | chr1_4:24026977-24026996 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr1_4:24027081-24027100 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr1_4:24027085-24027104 | None:intergenic | 35.0% |
| TATTGCCCAAAATATTAGGG+GGG | + | chr1_4:24027276-24027295 | None:intergenic | 35.0% | |
| AATACTAGTCCTATAAGCAG+TGG | + | chr1_4:24027303-24027322 | None:intergenic | 35.0% | |
| TGCTCATATTACACTATTCC+TGG | - | chr1_4:24027400-24027419 | Msa0157070:intron | 35.0% | |
| !! | TAGGCTTTGAATCAAGGAAA+AGG | + | chr1_4:24027436-24027455 | None:intergenic | 35.0% |
| CGTTATTTGACAACAGTAGT+AGG | + | chr1_4:24027455-24027474 | None:intergenic | 35.0% | |
| TGCAGAAGTAATATTCACTG+TGG | + | chr1_4:24027691-24027710 | None:intergenic | 35.0% | |
| AAAACGGAATGAAAAGATGC+TGG | - | chr1_4:24027725-24027744 | Msa0157070:intron | 35.0% | |
| ! | TCTTTAGAAAGACGAGCAAA+TGG | + | chr1_4:24028018-24028037 | None:intergenic | 35.0% |
| GGCTTATGCCAAATATTTGT+TGG | - | chr1_4:24028041-24028060 | Msa0157070:intron | 35.0% | |
| CAATGTCAATACAGGATTCA+GGG | + | chr1_4:24028275-24028294 | None:intergenic | 35.0% | |
| ATAAAGTCAAGATTGAGAGG+AGG | + | chr1_4:24028401-24028420 | None:intergenic | 35.0% | |
| TTTGTAATAGGGAAGTTAGC+AGG | - | chr1_4:24028463-24028482 | Msa0157070:intron | 35.0% | |
| TTCAACATAAGAGTCCAATG+TGG | + | chr1_4:24028527-24028546 | None:intergenic | 35.0% | |
| TGTTGAAAACAAAGAGAGAG+TGG | - | chr1_4:24028540-24028559 | Msa0157070:CDS | 35.0% | |
| GAGTTTACAAGAGAGAAAAG+AGG | - | chr1_4:24028585-24028604 | Msa0157070:CDS | 35.0% | |
| AAAACAAAACGAGAAGGTGA+AGG | + | chr1_4:24028677-24028696 | None:intergenic | 35.0% | |
| ATTTCCTATATTCACGCCGT+GGG | + | chr1_4:24021537-24021556 | None:intergenic | 40.0% | |
| TATTTCCTATATTCACGCCG+TGG | + | chr1_4:24021538-24021557 | None:intergenic | 40.0% | |
| TAGAATGGTTGCGTTCTTGA+AGG | + | chr1_4:24021651-24021670 | None:intergenic | 40.0% | |
| ACTGCTATCTTCCTTCTTCA+TGG | - | chr1_4:24021692-24021711 | Msa0157070:intron | 40.0% | |
| TGAAGAAGAAGCCATGAAGA+AGG | + | chr1_4:24021706-24021725 | None:intergenic | 40.0% | |
| !! | TTCAGAGTAGAATTTGGTGC+GGG | + | chr1_4:24021741-24021760 | None:intergenic | 40.0% |
| ! | TACTCTGAAAACACCAACTC+AGG | - | chr1_4:24021752-24021771 | Msa0157070:three_prime_UTR | 40.0% |
| ! | ACATACTTTTCACCCCCAAA+AGG | + | chr1_4:24021909-24021928 | None:intergenic | 40.0% |
| ! | TGGTGATGAGAATGTTACGT+TGG | - | chr1_4:24022322-24022341 | Msa0157070:intron | 40.0% |
| AGATGGTACAAACTCGGATT+AGG | - | chr1_4:24022414-24022433 | Msa0157070:intron | 40.0% | |
| ! | AAACTCGGATTAGGTGGTTT+GGG | - | chr1_4:24022423-24022442 | Msa0157070:intron | 40.0% |
| TTATGACGGCATTTGATCCA+TGG | - | chr1_4:24022469-24022488 | Msa0157070:intron | 40.0% | |
| AGTTTACTCAGATCAGCATG+TGG | - | chr1_4:24022546-24022565 | Msa0157070:intron | 40.0% | |
| GTTTACTCAGATCAGCATGT+GGG | - | chr1_4:24022547-24022566 | Msa0157070:intron | 40.0% | |
| !!! | AGTGACTAATGTGTCGGTTT+TGG | - | chr1_4:24022602-24022621 | Msa0157070:intron | 40.0% |
| ! | GAGAAAGGCACACACAAATT+TGG | - | chr1_4:24022648-24022667 | Msa0157070:intron | 40.0% |
| TTGTCAAATATCGGTCATGG+TGG | - | chr1_4:24022705-24022724 | Msa0157070:intron | 40.0% | |
| ACAAAACGTCCTTCGCAAAT+TGG | + | chr1_4:24022776-24022795 | None:intergenic | 40.0% | |
| ! | AATTTGCGAAGGACGTTTTG+TGG | - | chr1_4:24022775-24022794 | Msa0157070:intron | 40.0% |
| !!! | ATTTTTTTGGCTTTCCGCCA+TGG | - | chr1_4:24022828-24022847 | Msa0157070:intron | 40.0% |
| CAGACCATAATGCAAGATCA+TGG | - | chr1_4:24022953-24022972 | Msa0157070:intron | 40.0% | |
| TTTATCTGTGTGAAGCATGG+AGG | - | chr1_4:24023121-24023140 | Msa0157070:intron | 40.0% | |
| ! | GGTAAAGCATTTCGGATGAT+TGG | + | chr1_4:24023207-24023226 | None:intergenic | 40.0% |
| TATTAGCTCCAATGGAAGCA+TGG | + | chr1_4:24023487-24023506 | None:intergenic | 40.0% | |
| AATCCTCTAGTTGGAAGACT+TGG | - | chr1_4:24023565-24023584 | Msa0157070:intron | 40.0% | |
| CGGTAATGAGTATAAGGCAA+AGG | + | chr1_4:24023621-24023640 | None:intergenic | 40.0% | |
| ! | GTCAACTGACTTCACAATCA+AGG | + | chr1_4:24023733-24023752 | None:intergenic | 40.0% |
| CCCAAACATAGTCGAATAAG+AGG | - | chr1_4:24023857-24023876 | Msa0157070:intron | 40.0% | |
| CCCTCTTATTCGACTATGTT+TGG | + | chr1_4:24023861-24023880 | None:intergenic | 40.0% | |
| ! | ACAGTGATTGGTCATGTGAA+TGG | - | chr1_4:24023906-24023925 | Msa0157070:intron | 40.0% |
| ! | TATTTGAAGTGTGAACCGAC+TGG | + | chr1_4:24024076-24024095 | None:intergenic | 40.0% |
| ! | GTTTGTTGAAAGTCCCACAT+TGG | - | chr1_4:24024113-24024132 | Msa0157070:intron | 40.0% |
| TTTGTTGAGCCACCTGTTAT+TGG | - | chr1_4:24024239-24024258 | Msa0157070:intron | 40.0% | |
| CTCTGTAGTATGTGCACTTT+AGG | - | chr1_4:24024598-24024617 | Msa0157070:intron | 40.0% | |
| ! | GAACTTTTCAAACTCTCAGG+TGG | - | chr1_4:24024668-24024687 | Msa0157070:intron | 40.0% |
| AGGAAAAACAGTGGAAACAG+GGG | + | chr1_4:24024877-24024896 | None:intergenic | 40.0% | |
| GAGGAAAAACAGTGGAAACA+GGG | + | chr1_4:24024878-24024897 | None:intergenic | 40.0% | |
| AGAGGAAAAACAGTGGAAAC+AGG | + | chr1_4:24024879-24024898 | None:intergenic | 40.0% | |
| GGAACCAAGCAAAAAAACAG+AGG | + | chr1_4:24024965-24024984 | None:intergenic | 40.0% | |
| ! | AGTTCGTAAGTAGGATTGGT+AGG | + | chr1_4:24025038-24025057 | None:intergenic | 40.0% |
| ACACAGTTCGTAAGTAGGAT+TGG | + | chr1_4:24025042-24025061 | None:intergenic | 40.0% | |
| ACGTAACACAGTTCGTAAGT+AGG | + | chr1_4:24025047-24025066 | None:intergenic | 40.0% | |
| GGTTAAGGAACGTAAAAACG+AGG | + | chr1_4:24025071-24025090 | None:intergenic | 40.0% | |
| AGACCATCAACTGGTATTAG+AGG | + | chr1_4:24025144-24025163 | None:intergenic | 40.0% | |
| AGATATAAATTGGGGCCTTC+GGG | + | chr1_4:24025178-24025197 | None:intergenic | 40.0% | |
| AATAGATTCACAATGGGTCC+CGG | - | chr1_4:24025285-24025304 | Msa0157070:intron | 40.0% | |
| ATATAGATCCTGCCATAGCA+GGG | + | chr1_4:24025323-24025342 | None:intergenic | 40.0% | |
| TATATAGATCCTGCCATAGC+AGG | + | chr1_4:24025324-24025343 | None:intergenic | 40.0% | |
| !! | CTGCGGTTGATTTGTCTAAA+AGG | - | chr1_4:24025489-24025508 | Msa0157070:intron | 40.0% |
| AAGAGGAAAACCTTTCAAGC+TGG | + | chr1_4:24025546-24025565 | None:intergenic | 40.0% | |
| AAACACAACCGTATCAGACA+AGG | - | chr1_4:24025751-24025770 | Msa0157070:intron | 40.0% | |
| GTTTGAATGCTTATAGGCAG+TGG | - | chr1_4:24025814-24025833 | Msa0157070:intron | 40.0% | |
| GGGTGTTAGTCCATTCAATT+TGG | - | chr1_4:24025920-24025939 | Msa0157070:intron | 40.0% | |
| CATAAGAAAATTGACGGGGT+TGG | - | chr1_4:24025957-24025976 | Msa0157070:intron | 40.0% | |
| TGTTTGGAAACTGTGTTGCA+CGG | - | chr1_4:24025981-24026000 | Msa0157070:intron | 40.0% | |
| ATTGTCACATAAGCCTTGAG+AGG | - | chr1_4:24026105-24026124 | Msa0157070:intron | 40.0% | |
| AGTACTAATACTAGGGGAGT+AGG | + | chr1_4:24026206-24026225 | None:intergenic | 40.0% | |
| ! | ATTTTTGCATGAGGGAAGGA+AGG | - | chr1_4:24026269-24026288 | Msa0157070:intron | 40.0% |
| TTTAAACCTTGGTACGGCTA+CGG | + | chr1_4:24026675-24026694 | None:intergenic | 40.0% | |
| ! | TACGGGTACGTTTTGCAAAT+TGG | - | chr1_4:24026764-24026783 | Msa0157070:intron | 40.0% |
| !!! | TTTTCCAAACTCTGAAGCAC+GGG | + | chr1_4:24026794-24026813 | None:intergenic | 40.0% |
| !!! | GTTTTCCAAACTCTGAAGCA+CGG | + | chr1_4:24026795-24026814 | None:intergenic | 40.0% |
| !!! | CGACACTCATTTTGAAACGA+AGG | + | chr1_4:24026978-24026997 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr1_4:24027082-24027101 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr1_4:24027220-24027239 | Msa0157070:intron | 40.0% |
| CAATATCCACCACTGCTTAT+AGG | - | chr1_4:24027291-24027310 | Msa0157070:intron | 40.0% | |
| !! | CAGTAGTAGGCTTTGAATCA+AGG | + | chr1_4:24027442-24027461 | None:intergenic | 40.0% |
| GTTGTCAAATAACGCGATAG+AGG | - | chr1_4:24027461-24027480 | Msa0157070:intron | 40.0% | |
| GCTTCCTAGTTTCGCTATTA+GGG | - | chr1_4:24027528-24027547 | Msa0157070:intron | 40.0% | |
| ATTGCCCTAATAGCGAAACT+AGG | + | chr1_4:24027535-24027554 | None:intergenic | 40.0% | |
| ACCTAGCAGAAAACATGGAA+TGG | + | chr1_4:24027566-24027585 | None:intergenic | 40.0% | |
| AGATGCTGGCATTAAGCATT+CGG | - | chr1_4:24027739-24027758 | Msa0157070:intron | 40.0% | |
| AAATATATAGGACACCCAGC+TGG | + | chr1_4:24027796-24027815 | None:intergenic | 40.0% | |
| ! | GAAGGGCATAAAAAGATCAC+AGG | + | chr1_4:24027898-24027917 | None:intergenic | 40.0% |
| ! | TGCTCGTCTTTCTAAAGACT+TGG | - | chr1_4:24028020-24028039 | Msa0157070:intron | 40.0% |
| CCAATGTCAATACAGGATTC+AGG | + | chr1_4:24028276-24028295 | None:intergenic | 40.0% | |
| ! | CCTGAATCCTGTATTGACAT+TGG | - | chr1_4:24028273-24028292 | Msa0157070:intron | 40.0% |
| CTGAGAATCACGAACATCAA+AGG | + | chr1_4:24028309-24028328 | None:intergenic | 40.0% | |
| ATGTTCGTGATTCTCAGCTT+TGG | - | chr1_4:24028312-24028331 | Msa0157070:intron | 40.0% | |
| GCGTAAAAGGAAAATCGAGA+GGG | - | chr1_4:24028342-24028361 | Msa0157070:intron | 40.0% | |
| AAGAAGGAAGGATGTCATTC+CGG | + | chr1_4:24028646-24028665 | None:intergenic | 40.0% | |
| GCAAACAAGATCAAGGCATA+TGG | + | chr1_4:24028740-24028759 | None:intergenic | 40.0% | |
| ATACAAGAAGCAAGGTCCCA+CGG | - | chr1_4:24021518-24021537 | Msa0157070:three_prime_UTR | 45.0% | |
| ! | CAATGGAGGTACAACAATGG+TGG | - | chr1_4:24021612-24021631 | Msa0157070:three_prime_UTR | 45.0% |
| !! | TAGAATTTGGTGCGGGTGTA+AGG | + | chr1_4:24021734-24021753 | None:intergenic | 45.0% |
| CTGAAAACACCAACTCAGGT+TGG | - | chr1_4:24021756-24021775 | Msa0157070:three_prime_UTR | 45.0% | |
| AGTTGGGGTAGTACATATCG+TGG | - | chr1_4:24022388-24022407 | Msa0157070:intron | 45.0% | |
| ! | TGGTACAAACTCGGATTAGG+TGG | - | chr1_4:24022417-24022436 | Msa0157070:intron | 45.0% |
| ! | CAAACTCGGATTAGGTGGTT+TGG | - | chr1_4:24022422-24022441 | Msa0157070:intron | 45.0% |
| ACGGCATTTGATCCATGGAA+TGG | - | chr1_4:24022474-24022493 | Msa0157070:intron | 45.0% | |
| ! | CTTATCCCACTAAGTGGGTT+TGG | + | chr1_4:24022502-24022521 | None:intergenic | 45.0% |
| CAAACCCACTTAGTGGGATA+AGG | - | chr1_4:24022500-24022519 | Msa0157070:intron | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1_4:24022507-24022526 | None:intergenic | 45.0% |
| ! | TCAAGCCTTATCCCACTAAG+TGG | + | chr1_4:24022508-24022527 | None:intergenic | 45.0% |
| GCGTTGTCAAATATCGGTCA+TGG | - | chr1_4:24022702-24022721 | Msa0157070:intron | 45.0% | |
| AGTCATAACAGCGGAATGGA+AGG | + | chr1_4:24022887-24022906 | None:intergenic | 45.0% | |
| TTGGAGTCATAACAGCGGAA+TGG | + | chr1_4:24022891-24022910 | None:intergenic | 45.0% | |
| AGACAAGGAATGGAGAAGCT+GGG | + | chr1_4:24023097-24023116 | None:intergenic | 45.0% | |
| AAGACAAGGAATGGAGAAGC+TGG | + | chr1_4:24023098-24023117 | None:intergenic | 45.0% | |
| GGATGATTGGTACCATGACA+TGG | + | chr1_4:24023194-24023213 | None:intergenic | 45.0% | |
| ! | TGAAGTCAGTTGACGGACAA+TGG | - | chr1_4:24023739-24023758 | Msa0157070:intron | 45.0% |
| CTCTTCTTCTTGAAGGGCTA+AGG | - | chr1_4:24024733-24024752 | Msa0157070:intron | 45.0% | |
| TCTTCTTGAAGGGCTAAGGT+AGG | - | chr1_4:24024737-24024756 | Msa0157070:intron | 45.0% | |
| GGCTGATAAGCAATGTAGTC+AGG | + | chr1_4:24025123-24025142 | None:intergenic | 45.0% | |
| CAGCCTCTAATACCAGTTGA+TGG | - | chr1_4:24025138-24025157 | Msa0157070:intron | 45.0% | |
| TTTGGTTGCAGACCATCAAC+TGG | + | chr1_4:24025153-24025172 | None:intergenic | 45.0% | |
| ATCTGAGTGTCTTCTCCTTC+AGG | - | chr1_4:24025397-24025416 | Msa0157070:intron | 45.0% | |
| TGAGAGAGATTGAGCAGGAA+GGG | - | chr1_4:24025420-24025439 | Msa0157070:intron | 45.0% | |
| ! | TCTTTCTTCTGGGCTGTTTC+TGG | + | chr1_4:24025455-24025474 | None:intergenic | 45.0% |
| CTGCTTCGTGTCTTTCTTCT+GGG | + | chr1_4:24025465-24025484 | None:intergenic | 45.0% | |
| TCTGCTTCGTGTCTTTCTTC+TGG | + | chr1_4:24025466-24025485 | None:intergenic | 45.0% | |
| AGGAAAACCTTTCAAGCTGG+CGG | + | chr1_4:24025543-24025562 | None:intergenic | 45.0% | |
| TGAATGCTTATAGGCAGTGG+CGG | - | chr1_4:24025817-24025836 | Msa0157070:intron | 45.0% | |
| !! | AATTGACGGGGTTGGTTGTT+TGG | - | chr1_4:24025965-24025984 | Msa0157070:intron | 45.0% |
| GTTTGGAAACTGTGTTGCAC+GGG | - | chr1_4:24025982-24026001 | Msa0157070:intron | 45.0% | |
| ! | AACAAAGGTACGGGTACGTT+AGG | - | chr1_4:24026059-24026078 | Msa0157070:intron | 45.0% |
| TTTGCAAAACGTACCCGTAC+CGG | + | chr1_4:24026763-24026782 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr1_4:24027219-24027238 | Msa0157070:intron | 45.0% |
| ACTAGTCCTATAAGCAGTGG+TGG | + | chr1_4:24027300-24027319 | None:intergenic | 45.0% | |
| TTACACTATTCCTGGAGCCT+AGG | - | chr1_4:24027408-24027427 | Msa0157070:intron | 45.0% | |
| TACACTATTCCTGGAGCCTA+GGG | - | chr1_4:24027409-24027428 | Msa0157070:intron | 45.0% | |
| GAATCAAGGAAAAGGACCCT+AGG | + | chr1_4:24027428-24027447 | None:intergenic | 45.0% | |
| AATAGCGAAACTAGGAAGCG+AGG | + | chr1_4:24027527-24027546 | None:intergenic | 45.0% | |
| CGCTTCCTAGTTTCGCTATT+AGG | - | chr1_4:24027527-24027546 | Msa0157070:intron | 45.0% | |
| AGCAGAAAACATGGAATGGC+AGG | + | chr1_4:24027562-24027581 | None:intergenic | 45.0% | |
| ! | GCCATTCCATGTTTTCTGCT+AGG | - | chr1_4:24027562-24027581 | Msa0157070:intron | 45.0% |
| ACGTCACCTAGCAGAAAACA+TGG | + | chr1_4:24027571-24027590 | None:intergenic | 45.0% | |
| TGGCATTAAGCATTCGGCAA+TGG | - | chr1_4:24027745-24027764 | Msa0157070:intron | 45.0% | |
| ! | TTCGTGATTCTCAGCTTTGG+AGG | - | chr1_4:24028315-24028334 | Msa0157070:intron | 45.0% |
| !! | GATTCTCAGCTTTGGAGGAA+TGG | - | chr1_4:24028320-24028339 | Msa0157070:intron | 45.0% |
| ! | CTTTGGAGGAATGGCGTAAA+AGG | - | chr1_4:24028329-24028348 | Msa0157070:intron | 45.0% |
| GGCGTAAAAGGAAAATCGAG+AGG | - | chr1_4:24028341-24028360 | Msa0157070:intron | 45.0% | |
| GCATCATCATCGTACCACAT+TGG | - | chr1_4:24028510-24028529 | Msa0157070:intron | 45.0% | |
| TGGAGAGAGAGAATAGAGAG+AGG | - | chr1_4:24028560-24028579 | Msa0157070:CDS | 45.0% | |
| AGAAAAGAGGAGAGACAGAG+AGG | - | chr1_4:24028598-24028617 | Msa0157070:CDS | 45.0% | |
| GAAGGATGTCATTCCGGATA+TGG | + | chr1_4:24028640-24028659 | None:intergenic | 45.0% | |
| AAGGTGAGTCACAAGAAGGA+AGG | + | chr1_4:24028658-24028677 | None:intergenic | 45.0% | |
| !!! | AATGATATTTTTTATTTTTT+TGG | - | chr1_4:24022815-24022834 | Msa0157070:intron | 5.0% |
| GAGGGATAACCAACCTGAGT+TGG | + | chr1_4:24021768-24021787 | None:intergenic | 50.0% | |
| ATGGAGCCAAACCCACTTAG+TGG | - | chr1_4:24022493-24022512 | Msa0157070:intron | 50.0% | |
| TGGAGCCAAACCCACTTAGT+GGG | - | chr1_4:24022494-24022513 | Msa0157070:intron | 50.0% | |
| TACTCAGATCAGCATGTGGG+TGG | - | chr1_4:24022550-24022569 | Msa0157070:intron | 50.0% | |
| ! | TTGCGAAGGACGTTTTGTGG+CGG | - | chr1_4:24022778-24022797 | Msa0157070:intron | 50.0% |
| !!! | AGGACGTTTTGTGGCGGATA+TGG | - | chr1_4:24022784-24022803 | Msa0157070:intron | 50.0% |
| !!! | ACGTTTTGTGGCGGATATGG+TGG | - | chr1_4:24022787-24022806 | Msa0157070:intron | 50.0% |
| TGTTTGCAGATTGGGGACCA+TGG | + | chr1_4:24022848-24022867 | None:intergenic | 50.0% | |
| GACAAGGAATGGAGAAGCTG+GGG | + | chr1_4:24023096-24023115 | None:intergenic | 50.0% | |
| TCGTCTTGCCATGCTTCCAT+TGG | - | chr1_4:24023476-24023495 | Msa0157070:intron | 50.0% | |
| CCTCCAAGTCTTCCAACTAG+AGG | + | chr1_4:24023571-24023590 | None:intergenic | 50.0% | |
| CCTCTAGTTGGAAGACTTGG+AGG | - | chr1_4:24023568-24023587 | Msa0157070:intron | 50.0% | |
| CACTGTTGAGAGTCCCACAT+TGG | - | chr1_4:24023931-24023950 | Msa0157070:intron | 50.0% | |
| CTGGTCAATAGGTGGCTCAA+AGG | + | chr1_4:24024057-24024076 | None:intergenic | 50.0% | |
| TGAGCCACCTATTGACCAGT+CGG | - | chr1_4:24024058-24024077 | Msa0157070:intron | 50.0% | |
| ! | TGAACCGACTGGTCAATAGG+TGG | + | chr1_4:24024065-24024084 | None:intergenic | 50.0% |
| ! | GTGTGAACCGACTGGTCAAT+AGG | + | chr1_4:24024068-24024087 | None:intergenic | 50.0% |
| CCACCTGTTATTGGACTGCT+CGG | - | chr1_4:24024248-24024267 | Msa0157070:intron | 50.0% | |
| CACCTGTTATTGGACTGCTC+GGG | - | chr1_4:24024249-24024268 | Msa0157070:intron | 50.0% | |
| GTGTGTTGAGCGTTCCACAT+TGG | - | chr1_4:24024303-24024322 | Msa0157070:intron | 50.0% | |
| AACTGGTGCACGTCACTAAC+AGG | - | chr1_4:24024352-24024371 | Msa0157070:intron | 50.0% | |
| TCAAACTCTCAGGTGGACCA+AGG | - | chr1_4:24024675-24024694 | Msa0157070:intron | 50.0% | |
| ACTGGAGTGAAGTCGAAGCA+CGG | + | chr1_4:24024836-24024855 | None:intergenic | 50.0% | |
| ATCGAGATCCTGCGTAGGAT+CGG | + | chr1_4:24025100-24025119 | None:intergenic | 50.0% | |
| GCTCAATCTCTCTCACCTGA+AGG | + | chr1_4:24025415-24025434 | None:intergenic | 50.0% | |
| TCAGGTGAGAGAGATTGAGC+AGG | - | chr1_4:24025415-24025434 | Msa0157070:intron | 50.0% | |
| GTGAGAGAGATTGAGCAGGA+AGG | - | chr1_4:24025419-24025438 | Msa0157070:intron | 50.0% | |
| !! | CTTCTGGGCTGTTTCTGGTT+CGG | + | chr1_4:24025450-24025469 | None:intergenic | 50.0% |
| TGAGGGAAGGAAGGTTAGCA+AGG | - | chr1_4:24026278-24026297 | Msa0157070:intron | 50.0% | |
| TTGCAAAACGTACCCGTACC+GGG | + | chr1_4:24026762-24026781 | None:intergenic | 50.0% | |
| AGTACCCGTGCTTCAGAGTT+TGG | - | chr1_4:24026787-24026806 | Msa0157070:intron | 50.0% | |
| TGCCCAAAATATTAGGGGGG+CGG | + | chr1_4:24027273-24027292 | None:intergenic | 50.0% | |
| ATATAGGACACCCAGCTGGT+TGG | + | chr1_4:24027792-24027811 | None:intergenic | 50.0% | |
| GAGGGCGAGACAAAGACAAT+TGG | - | chr1_4:24028360-24028379 | Msa0157070:intron | 50.0% | |
| GAGAGACAGAGAGGATGAGA+CGG | - | chr1_4:24028607-24028626 | Msa0157070:CDS | 50.0% | |
| AGACGGAGAGGATCCATATC+CGG | - | chr1_4:24028624-24028643 | Msa0157070:CDS | 50.0% | |
| GGTGAAGGTGAGTCACAAGA+AGG | + | chr1_4:24028662-24028681 | None:intergenic | 50.0% | |
| AGGTCCCACGGCGTGAATAT+AGG | - | chr1_4:24021530-24021549 | Msa0157070:three_prime_UTR | 55.0% | |
| ! | GTGGGTTTGGCTCCATTCCA+TGG | + | chr1_4:24022489-24022508 | None:intergenic | 55.0% |
| TATCGGTCATGGTGGCACCA+TGG | - | chr1_4:24022713-24022732 | Msa0157070:intron | 55.0% | |
| TTCGCCACAGCAATTCGCCA+TGG | + | chr1_4:24022733-24022752 | None:intergenic | 55.0% | |
| TTGCAGATTGGGGACCATGG+CGG | + | chr1_4:24022845-24022864 | None:intergenic | 55.0% | |
| CCGAGCAGTCCAATAACAGG+TGG | + | chr1_4:24024251-24024270 | None:intergenic | 55.0% | |
| GACCCGAGCAGTCCAATAAC+AGG | + | chr1_4:24024254-24024273 | None:intergenic | 55.0% | |
| ATCCTGGCTACAGCAACCCT+GGG | + | chr1_4:24024763-24024782 | None:intergenic | 55.0% | |
| ! | TAGGATCGGTTGGCCGGTTA+AGG | + | chr1_4:24025086-24025105 | None:intergenic | 55.0% |
| AGATCCTGCGTAGGATCGGT+TGG | + | chr1_4:24025096-24025115 | None:intergenic | 55.0% | |
| TCAGGATCGAGATCCTGCGT+AGG | + | chr1_4:24025105-24025124 | None:intergenic | 55.0% | |
| GTCTGCAACCAAATGCCCGA+AGG | - | chr1_4:24025160-24025179 | Msa0157070:intron | 55.0% | |
| AATTGGGGCCTTCGGGCATT+TGG | + | chr1_4:24025171-24025190 | None:intergenic | 55.0% | |
| CCATAGCAGGGTCCAGGAAA+GGG | + | chr1_4:24025311-24025330 | None:intergenic | 55.0% | |
| AGACACGAAGCAGACAGCTG+CGG | - | chr1_4:24025472-24025491 | Msa0157070:intron | 55.0% | |
| AACGATGCCGCCAGCTTGAA+AGG | - | chr1_4:24025533-24025552 | Msa0157070:intron | 55.0% | |
| TGCGAGTATGGTACCCGGTA+CGG | - | chr1_4:24026005-24026024 | Msa0157070:intron | 55.0% | |
| GTACTGCGGTGGTACTCTCA+GGG | + | chr1_4:24026653-24026672 | None:intergenic | 55.0% | |
| TTGGTACGGCTACGGTACTG+CGG | + | chr1_4:24026667-24026686 | None:intergenic | 55.0% | |
| ! | TGCCCGCCCCCCTAATATTT+TGG | - | chr1_4:24027267-24027286 | Msa0157070:intron | 55.0% |
| ! | GCCCGCCCCCCTAATATTTT+GGG | - | chr1_4:24027268-24027287 | Msa0157070:intron | 55.0% |
| GCCCAAAATATTAGGGGGGC+GGG | + | chr1_4:24027272-24027291 | None:intergenic | 55.0% | |
| AGTGTGATCTGCCAACCAGC+TGG | - | chr1_4:24027778-24027797 | Msa0157070:intron | 55.0% | |
| GTGTGATCTGCCAACCAGCT+GGG | - | chr1_4:24027779-24027798 | Msa0157070:intron | 55.0% | |
| ACAGAGAGGATGAGACGGAG+AGG | - | chr1_4:24028612-24028631 | Msa0157070:CDS | 55.0% | |
| GGCACCATGGCGAATTGCTG+TGG | - | chr1_4:24022726-24022745 | Msa0157070:intron | 60.0% | |
| CTGCCACGGCCAATTTGCGA+AGG | - | chr1_4:24022764-24022783 | Msa0157070:intron | 60.0% | |
| CGTCCTTCGCAAATTGGCCG+TGG | + | chr1_4:24022770-24022789 | None:intergenic | 60.0% | |
| TGAAGGGCTAAGGTAGGCCC+AGG | - | chr1_4:24024743-24024762 | Msa0157070:intron | 60.0% | |
| GAAGGGCTAAGGTAGGCCCA+GGG | - | chr1_4:24024744-24024763 | Msa0157070:intron | 60.0% | |
| GATCCTGGCTACAGCAACCC+TGG | + | chr1_4:24024764-24024783 | None:intergenic | 60.0% | |
| CTGTAGCCAGGATCGAGTGC+TGG | - | chr1_4:24024770-24024789 | Msa0157070:CDS | 60.0% | |
| TACGAGCCAGCACTCGATCC+TGG | + | chr1_4:24024779-24024798 | None:intergenic | 60.0% | |
| GAAGCACGGTTGACGTACCG+TGG | + | chr1_4:24024822-24024841 | None:intergenic | 60.0% | |
| CCCTTTCCTGGACCCTGCTA+TGG | - | chr1_4:24025308-24025327 | Msa0157070:intron | 60.0% | |
| GCCATAGCAGGGTCCAGGAA+AGG | + | chr1_4:24025312-24025331 | None:intergenic | 60.0% | |
| TTCCTGGACCCTGCTATGGC+AGG | - | chr1_4:24025312-24025331 | Msa0157070:intron | 60.0% | |
| ATCCTGCCATAGCAGGGTCC+AGG | + | chr1_4:24025317-24025336 | None:intergenic | 60.0% | |
| CAAGCTGGCGGCATCGTTCA+AGG | + | chr1_4:24025531-24025550 | None:intergenic | 60.0% | |
| ! | GCTTATAGGCAGTGGCGGAG+AGG | - | chr1_4:24025822-24025841 | Msa0157070:intron | 60.0% |
| GTGTTGCACGGGTGCGAGTA+TGG | - | chr1_4:24025993-24026012 | Msa0157070:intron | 60.0% | |
| ACGGGTGCGAGTATGGTACC+CGG | - | chr1_4:24026000-24026019 | Msa0157070:intron | 60.0% | |
| GCGAGTATGGTACCCGGTAC+GGG | - | chr1_4:24026006-24026025 | Msa0157070:intron | 60.0% | |
| GGTACTGCGGTGGTACTCTC+AGG | + | chr1_4:24026654-24026673 | None:intergenic | 60.0% | |
| GCAGTACCGTAGCCGTACCA+AGG | - | chr1_4:24026666-24026685 | Msa0157070:intron | 60.0% | |
| ACCAGTACCCGCGTAGTACC+CGG | - | chr1_4:24026741-24026760 | Msa0157070:intron | 60.0% | |
| TACCCGCGTAGTACCCGGTA+CGG | - | chr1_4:24026746-24026765 | Msa0157070:intron | 60.0% | |
| TACCCGTACCGGGTACTACG+CGG | + | chr1_4:24026752-24026771 | None:intergenic | 60.0% | |
| GGAAAAGGACCCTAGGCTCC+AGG | + | chr1_4:24027421-24027440 | None:intergenic | 60.0% | |
| CCTGCGTAGGATCGGTTGGC+CGG | + | chr1_4:24025092-24025111 | None:intergenic | 65.0% | |
| AATGGGTCCCGGCCCTTTCC+TGG | - | chr1_4:24025296-24025315 | Msa0157070:intron | 65.0% | |
| AGCAGGGTCCAGGAAAGGGC+CGG | + | chr1_4:24025307-24025326 | None:intergenic | 65.0% | |
| ATGGTACCCGGTACGGGTGC+AGG | - | chr1_4:24026012-24026031 | Msa0157070:intron | 65.0% | |
| ACCCGGTACGGGTGCAGGTA+CGG | - | chr1_4:24026017-24026036 | Msa0157070:intron | 65.0% | |
| TCCCGTACCTGCACCCGTAC+CGG | + | chr1_4:24026022-24026041 | None:intergenic | 65.0% | |
| GTACGGCTACGGTACTGCGG+TGG | + | chr1_4:24026664-24026683 | None:intergenic | 65.0% | |
| ACCGGGTACTACGCGGGTAC+TGG | + | chr1_4:24026745-24026764 | None:intergenic | 65.0% | |
| ACCCGCGTAGTACCCGGTAC+GGG | - | chr1_4:24026747-24026766 | Msa0157070:intron | 65.0% | |
| ACCCGTACCGGGTACTACGC+GGG | + | chr1_4:24026751-24026770 | None:intergenic | 65.0% | |
| GGCCCAGGGTTGCTGTAGCC+AGG | - | chr1_4:24024758-24024777 | Msa0157070:CDS | 70.0% | |
| CCGGCCAACCGATCCTACGC+AGG | - | chr1_4:24025089-24025108 | Msa0157070:intron | 70.0% | |
| GCAGGGTCCAGGAAAGGGCC+GGG | + | chr1_4:24025306-24025325 | None:intergenic | 70.0% | |
| ! | GCAGTGGCGGAGAGGTGCAG+TGG | - | chr1_4:24025830-24025849 | Msa0157070:intron | 70.0% |
| CCCGTACCTGCACCCGTACC+GGG | + | chr1_4:24026021-24026040 | None:intergenic | 70.0% | |
| CCCGGTACGGGTGCAGGTAC+GGG | - | chr1_4:24026018-24026037 | Msa0157070:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 24021514 | 24028787 | 24021514 | ID=Msa0157070;Name=Msa0157070 |
| chr1_4 | mRNA | 24021514 | 24028787 | 24021514 | ID=Msa0157070-mRNA-1;Parent=Msa0157070;Name=Msa0157070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=100|1|1|1|0.75|0.6|5|334|150 |
| chr1_4 | exon | 24021514 | 24021655 | 24021514 | ID=Msa0157070-mRNA-1:exon:8346;Parent=Msa0157070-mRNA-1 |
| chr1_4 | exon | 24021695 | 24021972 | 24021695 | ID=Msa0157070-mRNA-1:exon:8345;Parent=Msa0157070-mRNA-1 |
| chr1_4 | exon | 24024747 | 24024882 | 24024747 | ID=Msa0157070-mRNA-1:exon:8344;Parent=Msa0157070-mRNA-1 |
| chr1_4 | exon | 24026789 | 24026859 | 24026789 | ID=Msa0157070-mRNA-1:exon:8343;Parent=Msa0157070-mRNA-1 |
| chr1_4 | exon | 24028528 | 24028787 | 24028528 | ID=Msa0157070-mRNA-1:exon:8342;Parent=Msa0157070-mRNA-1 |
| chr1_4 | five_prime_UTR | 24028688 | 24028787 | 24028688 | ID=Msa0157070-mRNA-1:five_prime_utr;Parent=Msa0157070-mRNA-1 |
| chr1_4 | CDS | 24028528 | 24028687 | 24028528 | ID=Msa0157070-mRNA-1:cds;Parent=Msa0157070-mRNA-1 |
| chr1_4 | CDS | 24026789 | 24026859 | 24026789 | ID=Msa0157070-mRNA-1:cds;Parent=Msa0157070-mRNA-1 |
| chr1_4 | CDS | 24024747 | 24024882 | 24024747 | ID=Msa0157070-mRNA-1:cds;Parent=Msa0157070-mRNA-1 |
| chr1_4 | CDS | 24021887 | 24021972 | 24021887 | ID=Msa0157070-mRNA-1:cds;Parent=Msa0157070-mRNA-1 |
| chr1_4 | three_prime_UTR | 24021695 | 24021886 | 24021695 | ID=Msa0157070-mRNA-1:three_prime_utr;Parent=Msa0157070-mRNA-1 |
| chr1_4 | three_prime_UTR | 24021514 | 24021655 | 24021514 | ID=Msa0157070-mRNA-1:three_prime_utr;Parent=Msa0157070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
