Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843250 | AFK42019.1 | 90.323 | 124 | 12 | 0 | 1 | 124 | 1 | 124 | 1.77e-71 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843250 | sp|Q945L4|WTR40_ARATH | 43.363 | 113 | 64 | 0 | 8 | 120 | 13 | 125 | 6.34e-23 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843250 | I3SP27 | 90.323 | 124 | 12 | 0 | 1 | 124 | 1 | 124 | 8.47e-72 | 223 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011170 | Msa0843250 | 0.805676 | 1.190041e-49 | -8.615850e-47 |
| Msa0029850 | Msa0843250 | 0.805906 | 1.064748e-49 | -8.615850e-47 |
| Msa0039330 | Msa0843250 | 0.800362 | 1.493409e-48 | -8.615850e-47 |
| Msa0052030 | Msa0843250 | 0.828566 | 8.374617e-55 | -8.615850e-47 |
| Msa0078750 | Msa0843250 | 0.811387 | 7.181430e-51 | -8.615850e-47 |
| Msa0086890 | Msa0843250 | 0.809518 | 1.818757e-50 | -8.615850e-47 |
| Msa0105700 | Msa0843250 | 0.808133 | 3.596618e-50 | -8.615850e-47 |
| Msa0119850 | Msa0843250 | 0.802064 | 6.698608e-49 | -8.615850e-47 |
| Msa0607540 | Msa0843250 | 0.845185 | 4.755442e-59 | -8.615850e-47 |
| Msa0610430 | Msa0843250 | 0.805832 | 1.103612e-49 | -8.615850e-47 |
| Msa0613460 | Msa0843250 | 0.803353 | 3.630430e-49 | -8.615850e-47 |
| Msa0621750 | Msa0843250 | -0.800959 | 1.128162e-48 | -8.615850e-47 |
| Msa0631990 | Msa0843250 | 0.812767 | 3.592289e-51 | -8.615850e-47 |
| Msa0635380 | Msa0843250 | 0.823777 | 1.154042e-53 | -8.615850e-47 |
| Msa0640380 | Msa0843250 | 0.806628 | 7.501343e-50 | -8.615850e-47 |
| Msa0647830 | Msa0843250 | 0.844049 | 9.613898e-59 | -8.615850e-47 |
| Msa0653490 | Msa0843250 | 0.800474 | 1.417212e-48 | -8.615850e-47 |
| Msa0654010 | Msa0843250 | 0.800211 | 1.603279e-48 | -8.615850e-47 |
| Msa0658570 | Msa0843250 | 0.813954 | 1.970780e-51 | -8.615850e-47 |
| Msa0663710 | Msa0843250 | 0.801894 | 7.260362e-49 | -8.615850e-47 |
| Msa0663920 | Msa0843250 | 0.814002 | 1.923050e-51 | -8.615850e-47 |
| Msa0670660 | Msa0843250 | 0.826384 | 2.794448e-54 | -8.615850e-47 |
| Msa0672690 | Msa0843250 | 0.811925 | 5.486915e-51 | -8.615850e-47 |
| Msa0673460 | Msa0843250 | 0.800557 | 1.363159e-48 | -8.615850e-47 |
| Msa0678820 | Msa0843250 | 0.845956 | 2.938096e-59 | -8.615850e-47 |
| Msa0688070 | Msa0843250 | 0.801779 | 7.665391e-49 | -8.615850e-47 |
| Msa0690440 | Msa0843250 | 0.825494 | 4.546420e-54 | -8.615850e-47 |
| Msa0692230 | Msa0843250 | 0.805673 | 1.191367e-49 | -8.615850e-47 |
| Msa0693380 | Msa0843250 | 0.811119 | 8.211016e-51 | -8.615850e-47 |
| Msa0722910 | Msa0843250 | 0.887965 | 8.969882e-73 | -8.615850e-47 |
| Msa0722920 | Msa0843250 | 0.820161 | 7.940776e-53 | -8.615850e-47 |
| Msa0723110 | Msa0843250 | 0.956428 | 3.016789e-114 | -8.615850e-47 |
| Msa0723120 | Msa0843250 | 0.832165 | 1.104503e-55 | -8.615850e-47 |
| Msa0723130 | Msa0843250 | 0.805989 | 1.022699e-49 | -8.615850e-47 |
| Msa0724560 | Msa0843250 | 0.805441 | 1.333141e-49 | -8.615850e-47 |
| Msa0739680 | Msa0843250 | 0.808134 | 3.595224e-50 | -8.615850e-47 |
| Msa0747260 | Msa0843250 | 0.816136 | 6.459403e-52 | -8.615850e-47 |
| Msa0835730 | Msa0843250 | 0.809578 | 1.765839e-50 | -8.615850e-47 |
| Msa0152170 | Msa0843250 | 0.806658 | 7.392172e-50 | -8.615850e-47 |
| Msa0153830 | Msa0843250 | 0.802676 | 5.010740e-49 | -8.615850e-47 |
| Msa0157070 | Msa0843250 | 0.803319 | 3.689221e-49 | -8.615850e-47 |
| Msa0169820 | Msa0843250 | 0.821632 | 3.641881e-53 | -8.615850e-47 |
| Msa0178860 | Msa0843250 | -0.806704 | 7.229572e-50 | -8.615850e-47 |
| Msa0178930 | Msa0843250 | 0.812693 | 3.727817e-51 | -8.615850e-47 |
| Msa0187220 | Msa0843250 | 0.800872 | 1.175218e-48 | -8.615850e-47 |
| Msa0226530 | Msa0843250 | 0.802685 | 4.989933e-49 | -8.615850e-47 |
| Msa0226890 | Msa0843250 | 0.846161 | 2.584655e-59 | -8.615850e-47 |
| Msa0372340 | Msa0843250 | 0.810708 | 1.007945e-50 | -8.615850e-47 |
| Msa0379640 | Msa0843250 | 0.830432 | 2.946582e-55 | -8.615850e-47 |
| Msa0388840 | Msa0843250 | 0.821314 | 4.311969e-53 | -8.615850e-47 |
| Msa0389810 | Msa0843250 | 0.843623 | 1.250078e-58 | -8.615850e-47 |
| Msa0394340 | Msa0843250 | 0.816537 | 5.255322e-52 | -8.615850e-47 |
| Msa0397390 | Msa0843250 | 0.828663 | 7.933234e-55 | -8.615850e-47 |
| Msa0412840 | Msa0843250 | 0.813005 | 3.186528e-51 | -8.615850e-47 |
| Msa0420960 | Msa0843250 | 0.807733 | 4.375860e-50 | -8.615850e-47 |
| Msa0429290 | Msa0843250 | 0.807005 | 6.243913e-50 | -8.615850e-47 |
| Msa0433410 | Msa0843250 | -0.813653 | 2.296016e-51 | -8.615850e-47 |
| Msa0442200 | Msa0843250 | 0.832889 | 7.303974e-56 | -8.615850e-47 |
| Msa0468130 | Msa0843250 | 0.833467 | 5.245084e-56 | -8.615850e-47 |
| Msa0475580 | Msa0843250 | 0.804230 | 2.387001e-49 | -8.615850e-47 |
| Msa0477130 | Msa0843250 | -0.818912 | 1.530452e-52 | -8.615850e-47 |
| Msa0482190 | Msa0843250 | -0.845668 | 3.518618e-59 | -8.615850e-47 |
| Msa0298620 | Msa0843250 | 0.822155 | 2.756041e-53 | -8.615850e-47 |
| Msa0302580 | Msa0843250 | -0.813349 | 2.677625e-51 | -8.615850e-47 |
| Msa0315290 | Msa0843250 | 0.830530 | 2.788607e-55 | -8.615850e-47 |
| Msa0340450 | Msa0843250 | 0.816339 | 5.820294e-52 | -8.615850e-47 |
| Msa0344690 | Msa0843250 | -0.803501 | 3.383530e-49 | -8.615850e-47 |
| Msa0344830 | Msa0843250 | 0.822366 | 2.461205e-53 | -8.615850e-47 |
| Msa0344910 | Msa0843250 | 0.806068 | 9.843172e-50 | -8.615850e-47 |
| Msa0347610 | Msa0843250 | 0.802626 | 5.130302e-49 | -8.615850e-47 |
| Msa0485500 | Msa0843250 | -0.842864 | 1.993366e-58 | -8.615850e-47 |
| Msa0489610 | Msa0843250 | 0.806066 | 9.853160e-50 | -8.615850e-47 |
| Msa0512750 | Msa0843250 | 0.807916 | 4.000400e-50 | -8.615850e-47 |
| Msa0519220 | Msa0843250 | 0.810978 | 8.809163e-51 | -8.615850e-47 |
| Msa0536220 | Msa0843250 | 0.822900 | 1.849783e-53 | -8.615850e-47 |
| Msa0543900 | Msa0843250 | 0.832373 | 9.807861e-56 | -8.615850e-47 |
| Msa0545080 | Msa0843250 | 0.800505 | 1.396709e-48 | -8.615850e-47 |
| Msa0553460 | Msa0843250 | 0.850927 | 1.237374e-60 | -8.615850e-47 |
| Msa0558690 | Msa0843250 | 0.805055 | 1.605572e-49 | -8.615850e-47 |
| Msa0562440 | Msa0843250 | 0.813316 | 2.722219e-51 | -8.615850e-47 |
| Msa0568240 | Msa0843250 | 0.800913 | 1.153138e-48 | -8.615850e-47 |
| Msa0570330 | Msa0843250 | 0.817126 | 3.875833e-52 | -8.615850e-47 |
| Msa0585230 | Msa0843250 | 0.814031 | 1.894718e-51 | -8.615850e-47 |
| Msa0585700 | Msa0843250 | 0.800509 | 1.393971e-48 | -8.615850e-47 |
| Msa0599770 | Msa0843250 | 0.834382 | 3.095270e-56 | -8.615850e-47 |
| Msa0599890 | Msa0843250 | 0.803397 | 3.554287e-49 | -8.615850e-47 |
| Msa0843250 | Msa0843260 | 0.848207 | 7.098515e-60 | -8.615850e-47 |
| Msa0843250 | Msa0846810 | 0.805375 | 1.376275e-49 | -8.615850e-47 |
| Msa0843250 | Msa0848900 | 0.807594 | 4.682805e-50 | -8.615850e-47 |
| Msa0843250 | Msa0849030 | 0.803739 | 3.018558e-49 | -8.615850e-47 |
| Msa0843250 | Msa0869120 | 0.805772 | 1.135797e-49 | -8.615850e-47 |
| Msa0843250 | Msa0870150 | 0.818580 | 1.820165e-52 | -8.615850e-47 |
| Msa0843250 | Msa0878880 | 0.803858 | 2.852478e-49 | -8.615850e-47 |
| Msa0843250 | Msa0880110 | 0.819046 | 1.426159e-52 | -8.615850e-47 |
| Msa0843250 | Msa0927380 | 0.800856 | 1.184569e-48 | -8.615850e-47 |
| Msa0843250 | Msa0935850 | 0.810275 | 1.249697e-50 | -8.615850e-47 |
| Msa0843250 | Msa0944550 | 0.835076 | 2.070932e-56 | -8.615850e-47 |
| Msa0843250 | Msa0976670 | 0.826039 | 3.375500e-54 | -8.615850e-47 |
| Msa0843250 | Msa0982270 | 0.842033 | 3.309926e-58 | -8.615850e-47 |
| Msa0843250 | Msa0992490 | -0.829018 | 6.509272e-55 | -8.615850e-47 |
| Msa0843250 | Msa1003620 | 0.820959 | 5.205877e-53 | -8.615850e-47 |
| Msa0843250 | Msa1012830 | 0.836578 | 8.621822e-57 | -8.615850e-47 |
| Msa0843250 | Msa1014540 | 0.800291 | 1.544045e-48 | -8.615850e-47 |
| Msa0843250 | Msa1046460 | 0.811183 | 7.951430e-51 | -8.615850e-47 |
| Msa0843250 | Msa1054410 | 0.838037 | 3.648851e-57 | -8.615850e-47 |
| Msa0843250 | Msa1075220 | -0.836561 | 8.704643e-57 | -8.615850e-47 |
| Msa0843250 | Msa1090260 | 0.844738 | 6.277314e-59 | -8.615850e-47 |
| Msa0843250 | Msa1116130 | -0.833234 | 5.996397e-56 | -8.615850e-47 |
| Msa0843250 | Msa1139000 | -0.820440 | 6.851494e-53 | -8.615850e-47 |
| Msa0843250 | Msa1143930 | -0.817417 | 3.333114e-52 | -8.615850e-47 |
| Msa0843250 | Msa1158670 | 0.810858 | 9.349872e-51 | -8.615850e-47 |
| Msa0843250 | Msa1162550 | -0.836877 | 7.234525e-57 | -8.615850e-47 |
| Msa0843250 | Msa1183100 | -0.818144 | 2.284664e-52 | -8.615850e-47 |
| Msa0843250 | Msa1202770 | -0.821960 | 3.058268e-53 | -8.615850e-47 |
| Msa0843250 | Msa1207380 | 0.811180 | 7.963894e-51 | -8.615850e-47 |
| Msa0843250 | Msa1212170 | 0.823655 | 1.232502e-53 | -8.615850e-47 |
| Msa0843250 | Msa1212250 | 0.812194 | 4.792999e-51 | -8.615850e-47 |
| Msa0843250 | Msa1217430 | -0.824010 | 1.017203e-53 | -8.615850e-47 |
| Msa0843250 | Msa1224480 | 0.801964 | 7.021566e-49 | -8.615850e-47 |
| Msa0843250 | Msa1224810 | 0.800510 | 1.393651e-48 | -8.615850e-47 |
| Msa0843250 | Msa1225730 | -0.801440 | 8.997180e-49 | -8.615850e-47 |
| Msa0843250 | Msa1233500 | 0.823124 | 1.639942e-53 | -8.615850e-47 |
| Msa0843250 | Msa1233890 | 0.811676 | 6.215566e-51 | -8.615850e-47 |
| Msa0843250 | Msa1246500 | 0.822756 | 1.997491e-53 | -8.615850e-47 |
| Msa0843250 | Msa1258380 | -0.844909 | 5.644062e-59 | -8.615850e-47 |
| Msa0843250 | Msa1262920 | 0.812175 | 4.838291e-51 | -8.615850e-47 |
| Msa0843250 | Msa1271200 | 0.812904 | 3.352744e-51 | -8.615850e-47 |
| Msa0843250 | Msa1276440 | 0.810751 | 9.865187e-51 | -8.615850e-47 |
| Msa0843250 | Msa1277280 | 0.836615 | 8.436394e-57 | -8.615850e-47 |
| Msa0843250 | Msa1279210 | 0.813495 | 2.486766e-51 | -8.615850e-47 |
| Msa0843250 | Msa1287430 | 0.800963 | 1.126308e-48 | -8.615850e-47 |
| Msa0843250 | Msa1287480 | 0.802572 | 5.264771e-49 | -8.615850e-47 |
| Msa0843250 | Msa1295540 | -0.815125 | 1.084968e-51 | -8.615850e-47 |
| Msa0843250 | Msa1302100 | 0.809682 | 1.676728e-50 | -8.615850e-47 |
| Msa0843250 | Msa1302190 | -0.805857 | 1.089922e-49 | -8.615850e-47 |
| Msa0843250 | Msa1307740 | 0.836370 | 9.739520e-57 | -8.615850e-47 |
| Msa0843250 | Msa1322190 | 0.802928 | 4.443957e-49 | -8.615850e-47 |
| Msa0843250 | Msa1348600 | 0.800272 | 1.557914e-48 | -8.615850e-47 |
| Msa0843250 | Msa1362880 | 0.813354 | 2.670303e-51 | -8.615850e-47 |
| Msa0843250 | Msa1369530 | 0.804187 | 2.436228e-49 | -8.615850e-47 |
| Msa0843250 | Msa1370340 | 0.807983 | 3.871386e-50 | -8.615850e-47 |
| Msa0843250 | Msa1376890 | 0.815747 | 7.891964e-52 | -8.615850e-47 |
| Msa0843250 | Msa1384350 | 0.802009 | 6.875816e-49 | -8.615850e-47 |
| Msa0843250 | Msa1390050 | 0.802116 | 6.535864e-49 | -8.615850e-47 |
| Msa0843250 | Msa1403340 | 0.814478 | 1.509211e-51 | -8.615850e-47 |
| Msa0843250 | Msa1419960 | 0.861830 | 7.786101e-64 | -8.615850e-47 |
| Msa0843250 | Msa1419970 | 0.806883 | 6.626056e-50 | -8.615850e-47 |
| Msa0843250 | Msa1444250 | -0.844233 | 8.581078e-59 | -8.615850e-47 |
| Msa0843250 | Msa1451620 | -0.832155 | 1.110775e-55 | -8.615850e-47 |
| Msa0843250 | Msa1462060 | 0.800124 | 1.669765e-48 | -8.615850e-47 |
| Msa0843250 | Msa1464940 | 0.814207 | 1.732390e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843250 | MtrunA17_Chr5g0413951 | 91.870 | 123 | 10 | 0 | 1 | 123 | 1 | 123 | 6.03e-74 | 224 |
| Msa0843250 | MtrunA17_Chr5g0413941 | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 1.28e-66 | 205 |
| Msa0843250 | MtrunA17_Chr5g0413931 | 74.380 | 121 | 29 | 1 | 3 | 123 | 4 | 122 | 1.74e-57 | 182 |
| Msa0843250 | MtrunA17_Chr5g0413921 | 67.241 | 116 | 38 | 0 | 5 | 120 | 5 | 120 | 3.77e-50 | 163 |
| Msa0843250 | MtrunA17_Chr7g0227921 | 45.872 | 109 | 59 | 0 | 12 | 120 | 16 | 124 | 1.59e-23 | 93.6 |
| Msa0843250 | MtrunA17_Chr6g0451181 | 43.119 | 109 | 62 | 0 | 12 | 120 | 17 | 125 | 5.71e-23 | 87.4 |
| Msa0843250 | MtrunA17_Chr6g0451261 | 41.441 | 111 | 65 | 0 | 10 | 120 | 14 | 124 | 4.24e-22 | 90.9 |
| Msa0843250 | MtrunA17_Chr6g0451251 | 47.273 | 110 | 57 | 1 | 12 | 120 | 17 | 126 | 8.51e-22 | 89.0 |
| Msa0843250 | MtrunA17_Chr6g0451211 | 41.441 | 111 | 63 | 1 | 12 | 120 | 17 | 127 | 9.70e-21 | 86.3 |
| Msa0843250 | MtrunA17_Chr6g0451171 | 42.708 | 96 | 55 | 0 | 25 | 120 | 30 | 125 | 1.20e-20 | 85.9 |
| Msa0843250 | MtrunA17_Chr6g0451201 | 44.954 | 109 | 58 | 1 | 12 | 120 | 17 | 123 | 8.90e-20 | 83.6 |
| Msa0843250 | MtrunA17_Chr3g0126101 | 43.119 | 109 | 61 | 1 | 12 | 120 | 11 | 118 | 2.15e-18 | 79.7 |
| Msa0843250 | MtrunA17_Chr5g0413961 | 38.532 | 109 | 66 | 1 | 12 | 120 | 19 | 126 | 1.34e-17 | 77.4 |
| Msa0843250 | MtrunA17_Chr1g0150151 | 39.286 | 112 | 67 | 1 | 10 | 120 | 14 | 125 | 3.42e-16 | 73.6 |
| Msa0843250 | MtrunA17_Chr4g0059311 | 40.541 | 111 | 63 | 3 | 12 | 120 | 16 | 125 | 3.94e-15 | 70.5 |
| Msa0843250 | MtrunA17_Chr3g0126091 | 39.474 | 114 | 66 | 3 | 12 | 122 | 16 | 129 | 9.46e-14 | 66.6 |
| Msa0843250 | MtrunA17_Chr1g0155761 | 37.273 | 110 | 67 | 2 | 12 | 120 | 26 | 134 | 3.29e-13 | 65.1 |
| Msa0843250 | MtrunA17_Chr3g0114731 | 38.182 | 110 | 66 | 2 | 12 | 120 | 23 | 131 | 5.77e-13 | 64.7 |
| Msa0843250 | MtrunA17_Chr1g0182291 | 36.364 | 99 | 61 | 2 | 23 | 120 | 31 | 128 | 1.32e-11 | 60.5 |
| Msa0843250 | MtrunA17_Chr5g0408031 | 31.481 | 108 | 72 | 2 | 12 | 118 | 15 | 121 | 2.61e-11 | 59.7 |
| Msa0843250 | MtrunA17_Chr6g0463971 | 34.259 | 108 | 68 | 2 | 12 | 118 | 21 | 126 | 5.02e-11 | 58.9 |
| Msa0843250 | MtrunA17_Chr5g0408001 | 32.727 | 110 | 72 | 2 | 12 | 120 | 15 | 123 | 5.70e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843250 | AT5G40210.1 | 43.363 | 113 | 64 | 0 | 8 | 120 | 13 | 125 | 6.44e-24 | 94.7 |
| Msa0843250 | AT3G28050.1 | 45.045 | 111 | 61 | 0 | 10 | 120 | 14 | 124 | 9.48e-20 | 84.0 |
| Msa0843250 | AT5G40230.1 | 42.342 | 111 | 64 | 0 | 10 | 120 | 23 | 133 | 1.01e-19 | 84.0 |
| Msa0843250 | AT5G40240.2 | 40.367 | 109 | 65 | 0 | 12 | 120 | 38 | 146 | 9.19e-19 | 81.3 |
| Msa0843250 | AT5G40240.1 | 40.367 | 109 | 65 | 0 | 12 | 120 | 24 | 132 | 9.56e-19 | 81.3 |
| Msa0843250 | AT5G40240.3 | 40.367 | 109 | 65 | 0 | 12 | 120 | 24 | 132 | 9.56e-19 | 81.3 |
| Msa0843250 | AT3G28100.3 | 46.847 | 111 | 59 | 0 | 10 | 120 | 16 | 126 | 3.95e-17 | 75.5 |
| Msa0843250 | AT3G28100.2 | 46.847 | 111 | 59 | 0 | 10 | 120 | 16 | 126 | 5.44e-17 | 75.1 |
| Msa0843250 | AT3G28100.1 | 46.847 | 111 | 59 | 0 | 10 | 120 | 16 | 126 | 5.76e-17 | 75.9 |
| Msa0843250 | AT4G15540.1 | 42.342 | 111 | 64 | 0 | 10 | 120 | 19 | 129 | 1.67e-16 | 74.7 |
| Msa0843250 | AT4G15540.2 | 42.342 | 111 | 64 | 0 | 10 | 120 | 19 | 129 | 1.67e-16 | 74.7 |
| Msa0843250 | AT3G28080.3 | 46.847 | 111 | 59 | 0 | 10 | 120 | 16 | 126 | 2.37e-16 | 73.9 |
| Msa0843250 | AT3G28080.1 | 46.847 | 111 | 59 | 0 | 10 | 120 | 16 | 126 | 4.70e-16 | 73.6 |
| Msa0843250 | AT3G28130.6 | 43.243 | 111 | 63 | 0 | 10 | 120 | 15 | 125 | 2.86e-15 | 69.7 |
| Msa0843250 | AT3G28130.4 | 42.609 | 115 | 66 | 0 | 6 | 120 | 11 | 125 | 4.91e-15 | 70.1 |
| Msa0843250 | AT3G28130.2 | 42.609 | 115 | 66 | 0 | 6 | 120 | 11 | 125 | 5.49e-15 | 70.5 |
| Msa0843250 | AT5G07050.1 | 34.545 | 110 | 70 | 2 | 12 | 120 | 22 | 130 | 2.01e-12 | 63.5 |
| Msa0843250 | AT5G45370.2 | 32.727 | 110 | 72 | 2 | 10 | 118 | 22 | 130 | 4.68e-11 | 59.3 |
| Msa0843250 | AT5G45370.4 | 32.727 | 110 | 72 | 2 | 10 | 118 | 22 | 130 | 4.68e-11 | 59.3 |
| Msa0843250 | AT5G45370.1 | 32.727 | 110 | 72 | 2 | 10 | 118 | 22 | 130 | 4.99e-11 | 59.3 |
| Msa0843250 | AT3G28070.3 | 45.946 | 111 | 60 | 0 | 10 | 120 | 19 | 129 | 9.10e-11 | 58.5 |
Find 23 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAAAATTGATGTTGAAAT+TGG | 0.226936 | 5_4:-20884602 | None:intergenic |
| TTCTGCAGATTACTTCTTCT+TGG | 0.233740 | 5_4:+20884620 | Msa0843250:CDS |
| ACTCATATGTTAATGACTTC+TGG | 0.288657 | 5_4:+20884755 | Msa0843250:CDS |
| ATAGCAAGTATGAAGGTAAA+AGG | 0.300566 | 5_4:-20884830 | None:intergenic |
| AAATGTCAAAATTGTTAGAT+TGG | 0.329958 | 5_4:-20884272 | None:intergenic |
| TACTTCTTCTTGGTTGCCTC+AGG | 0.379746 | 5_4:+20884630 | Msa0843250:CDS |
| TCATACTTGCTATAATTTCA+AGG | 0.384041 | 5_4:+20884840 | Msa0843250:CDS |
| ATGAAAGCAGCCACAAAAGA+TGG | 0.452927 | 5_4:+20884482 | Msa0843250:CDS |
| AAAATTGATGTTGAAATTGG+AGG | 0.500522 | 5_4:-20884599 | None:intergenic |
| CTATGGTGGAAGAGAGTGGA+TGG | 0.506366 | 5_4:-20884563 | None:intergenic |
| TGAAATTATAGCAAGTATGA+AGG | 0.526932 | 5_4:-20884837 | None:intergenic |
| AACAATAGCTGAAGCCAACA+TGG | 0.534674 | 5_4:-20884795 | None:intergenic |
| GAAGAAAACATAGAGCCAAA+AGG | 0.540600 | 5_4:-20884538 | None:intergenic |
| ATTGATGTTGAAATTGGAGG+AGG | 0.546987 | 5_4:-20884596 | None:intergenic |
| TAAATTCAGTTCTCCCATGT+TGG | 0.547322 | 5_4:+20884781 | Msa0843250:CDS |
| GTGAGAATTAACAAGCAAGT+TGG | 0.550219 | 5_4:+20884357 | Msa0843250:five_prime_UTR |
| TGCAGCTCAAATTGTTGAAG+TGG | 0.587755 | 5_4:+20884445 | Msa0843250:CDS |
| GCAAGTATGAAGGTAAAAGG+AGG | 0.605835 | 5_4:-20884827 | None:intergenic |
| CAAGTATGAAGGTAAAAGGA+GGG | 0.622141 | 5_4:-20884826 | None:intergenic |
| GCAGCTCAAATTGTTGAAGT+GGG | 0.628887 | 5_4:+20884446 | Msa0843250:CDS |
| ACAATAGCTGAAGCCAACAT+GGG | 0.645656 | 5_4:-20884794 | None:intergenic |
| TCGGACTAAAGTTAAAGTTG+AGG | 0.649103 | 5_4:+20884302 | Msa0843250:five_prime_UTR |
| GCTCAAATTGTTGAAGTGGG+TGG | 0.711164 | 5_4:+20884449 | Msa0843250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATAAAGATTGAATT+TGG | + | chr5_4:20884693-20884712 | Msa0843250:intron | 10.0% |
| !!! | ATTTTGACATTTTTATTAGT+CGG | + | chr5_4:20884283-20884302 | Msa0843250:five_prime_UTR | 15.0% |
| !! | AAATGTCAAAATTGTTAGAT+TGG | - | chr5_4:20884275-20884294 | None:intergenic | 20.0% |
| !!! | GGTATGTTGTTTTTATTTTA+TGG | + | chr5_4:20884861-20884880 | Msa0843250:CDS | 20.0% |
| !!! | ATTTTATGGTTGAAATTACA+AGG | + | chr5_4:20884875-20884894 | Msa0843250:CDS | 20.0% |
| !!! | CGTCTTACTTTTATAATATC+TGG | - | chr5_4:20884338-20884357 | None:intergenic | 25.0% |
| !! | CATTGTTTACAAAAACCTTT+TGG | + | chr5_4:20884523-20884542 | Msa0843250:CDS | 25.0% |
| ! | AAAATTGATGTTGAAATTGG+AGG | - | chr5_4:20884602-20884621 | None:intergenic | 25.0% |
| ! | CAGAAAATTGATGTTGAAAT+TGG | - | chr5_4:20884605-20884624 | None:intergenic | 25.0% |
| ! | TGAAATTATAGCAAGTATGA+AGG | - | chr5_4:20884840-20884859 | None:intergenic | 25.0% |
| !!! | TCATACTTGCTATAATTTCA+AGG | + | chr5_4:20884840-20884859 | Msa0843250:CDS | 25.0% |
| !!! | TACAAGGTTTTGTTGTTTTT+TGG | + | chr5_4:20884891-20884910 | Msa0843250:CDS | 25.0% |
| ! | AATACTCATTCCATCTTTTG+TGG | - | chr5_4:20884495-20884514 | None:intergenic | 30.0% |
| ! | TACTATTTTGTTCATACCTG+AGG | - | chr5_4:20884649-20884668 | None:intergenic | 30.0% |
| TTTGGCAAAATAGAGTGATA+TGG | + | chr5_4:20884711-20884730 | Msa0843250:intron | 30.0% | |
| ACTCATATGTTAATGACTTC+TGG | + | chr5_4:20884755-20884774 | Msa0843250:CDS | 30.0% | |
| ATAGCAAGTATGAAGGTAAA+AGG | - | chr5_4:20884833-20884852 | None:intergenic | 30.0% | |
| TCGGACTAAAGTTAAAGTTG+AGG | + | chr5_4:20884302-20884321 | Msa0843250:five_prime_UTR | 35.0% | |
| GTGAGAATTAACAAGCAAGT+TGG | + | chr5_4:20884357-20884376 | Msa0843250:five_prime_UTR | 35.0% | |
| CAGACAGAGACAAGAAAAAA+TGG | + | chr5_4:20884388-20884407 | Msa0843250:exon | 35.0% | |
| GAAGAAAACATAGAGCCAAA+AGG | - | chr5_4:20884541-20884560 | None:intergenic | 35.0% | |
| ATTGATGTTGAAATTGGAGG+AGG | - | chr5_4:20884599-20884618 | None:intergenic | 35.0% | |
| TTCTGCAGATTACTTCTTCT+TGG | + | chr5_4:20884620-20884639 | Msa0843250:CDS | 35.0% | |
| TAAATTCAGTTCTCCCATGT+TGG | + | chr5_4:20884781-20884800 | Msa0843250:CDS | 35.0% | |
| CAAGTATGAAGGTAAAAGGA+GGG | - | chr5_4:20884829-20884848 | None:intergenic | 35.0% | |
| AGACAAGAAAAAATGGCGAG+TGG | + | chr5_4:20884395-20884414 | Msa0843250:exon | 40.0% | |
| TGCAGCTCAAATTGTTGAAG+TGG | + | chr5_4:20884445-20884464 | Msa0843250:CDS | 40.0% | |
| GCAGCTCAAATTGTTGAAGT+GGG | + | chr5_4:20884446-20884465 | Msa0843250:CDS | 40.0% | |
| ATGAAAGCAGCCACAAAAGA+TGG | + | chr5_4:20884482-20884501 | Msa0843250:CDS | 40.0% | |
| !! | TTTTCTATGGTGGAAGAGAG+TGG | - | chr5_4:20884570-20884589 | None:intergenic | 40.0% |
| ACAATAGCTGAAGCCAACAT+GGG | - | chr5_4:20884797-20884816 | None:intergenic | 40.0% | |
| AACAATAGCTGAAGCCAACA+TGG | - | chr5_4:20884798-20884817 | None:intergenic | 40.0% | |
| GCAAGTATGAAGGTAAAAGG+AGG | - | chr5_4:20884830-20884849 | None:intergenic | 40.0% | |
| CAAGAAAAAATGGCGAGTGG+AGG | + | chr5_4:20884398-20884417 | Msa0843250:exon | 45.0% | |
| GCTCAAATTGTTGAAGTGGG+TGG | + | chr5_4:20884449-20884468 | Msa0843250:CDS | 45.0% | |
| ! | GAGGAGCTCTTTTTCTATGG+TGG | - | chr5_4:20884580-20884599 | None:intergenic | 45.0% |
| ! | GAGGAGGAGCTCTTTTTCTA+TGG | - | chr5_4:20884583-20884602 | None:intergenic | 45.0% |
| TACTTCTTCTTGGTTGCCTC+AGG | + | chr5_4:20884630-20884649 | Msa0843250:CDS | 45.0% | |
| ! | CTATGGTGGAAGAGAGTGGA+TGG | - | chr5_4:20884566-20884585 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 20884271 | 20884919 | 20884271 | ID=Msa0843250;Name=Msa0843250 |
| chr5_4 | mRNA | 20884271 | 20884919 | 20884271 | ID=Msa0843250-mRNA-1;Parent=Msa0843250;Name=Msa0843250-mRNA-1;_AED=0.38;_eAED=0.38;_QI=136|1|0.5|1|1|1|2|0|139 |
| chr5_4 | exon | 20884271 | 20884651 | 20884271 | ID=Msa0843250-mRNA-1:exon:8680;Parent=Msa0843250-mRNA-1 |
| chr5_4 | exon | 20884748 | 20884919 | 20884748 | ID=Msa0843250-mRNA-1:exon:8681;Parent=Msa0843250-mRNA-1 |
| chr5_4 | five_prime_UTR | 20884271 | 20884406 | 20884271 | ID=Msa0843250-mRNA-1:five_prime_utr;Parent=Msa0843250-mRNA-1 |
| chr5_4 | CDS | 20884407 | 20884651 | 20884407 | ID=Msa0843250-mRNA-1:cds;Parent=Msa0843250-mRNA-1 |
| chr5_4 | CDS | 20884748 | 20884919 | 20884748 | ID=Msa0843250-mRNA-1:cds;Parent=Msa0843250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
