AlfalfaGEDB | Msa0091570

M. sativa cultivar zhongmu-4 / Msa0091570

KEGG: K18490
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091570	sp\|Q5QMM3\|WOX8_ORYSJ	53.455	275	102	8	48	305	1	266	1.77e-85	260

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091570	A0A072VS22	97.727	264	6	0	44	307	1	264	0.0	543

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TFs/TRs:

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Gene ID	Type	Classification
Msa0091570	TF	HB-WOX

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003640	Msa0091570	0.811851	5.694161e-51	-8.615850e-47
Msa0004950	Msa0091570	0.819776	9.723264e-53	-8.615850e-47
Msa0004980	Msa0091570	0.832687	8.200043e-56	-8.615850e-47
Msa0013050	Msa0091570	-0.844796	6.055683e-59	-8.615850e-47
Msa0023000	Msa0091570	0.828737	7.611257e-55	-8.615850e-47
Msa0025730	Msa0091570	0.825317	5.007684e-54	-8.615850e-47
Msa0027260	Msa0091570	0.820651	6.129219e-53	-8.615850e-47
Msa0030380	Msa0091570	0.811402	7.127550e-51	-8.615850e-47
Msa0032260	Msa0091570	0.801999	6.908873e-49	-8.615850e-47
Msa0032580	Msa0091570	0.823764	1.162250e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091570	MtrunA17_Chr1g0212511	97.727	264	6	0	44	307	1	264	0.0	543
Msa0091570	MtrunA17_Chr3g0144021	69.375	160	44	4	57	211	8	167	4.23e-73	224
Msa0091570	MtrunA17_Chr7g0222981	60.753	186	51	5	48	232	1	165	2.46e-66	206
Msa0091570	MtrunA17_Chr4g0043891	44.706	85	38	1	128	212	8	83	1.35e-16	77.8
Msa0091570	MtrunA17_Chr2g0283141	43.939	66	37	0	125	190	52	117	2.33e-15	76.3
Msa0091570	MtrunA17_Chr7g0223471	42.857	77	40	1	115	187	30	106	2.05e-14	73.2
Msa0091570	MtrunA17_Chr8g0392991	39.506	81	48	1	128	208	96	175	6.02e-13	68.6
Msa0091570	MtrunA17_Chr7g0238431	46.774	62	33	0	128	189	8	69	1.56e-12	65.5
Msa0091570	MtrunA17_Chr4g0031341	46.667	60	32	0	128	187	25	84	8.85e-12	64.3
Msa0091570	MtrunA17_Chr5g0436661	43.333	60	34	0	128	187	33	92	1.69e-11	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091570	AT4G35550.1	50.000	298	82	8	47	307	1	268	3.39e-85	257
Msa0091570	AT1G20700.3	52.761	163	69	5	53	211	19	177	1.51e-52	171
Msa0091570	AT1G20700.1	52.761	163	69	5	53	211	19	177	2.08e-52	171
Msa0091570	AT1G20700.2	58.163	98	38	2	105	199	7	104	6.28e-34	121
Msa0091570	AT1G20710.1	52.857	140	61	4	66	201	13	151	9.91e-34	122
Msa0091570	AT5G45980.1	44.615	65	36	0	125	189	52	116	4.11e-15	75.1
Msa0091570	AT2G33880.2	44.615	65	36	0	125	189	52	116	4.30e-15	75.5
Msa0091570	AT2G33880.1	44.615	65	36	0	125	189	52	116	4.81e-15	75.5
Msa0091570	AT3G18010.1	46.667	60	32	0	128	187	76	135	3.82e-13	69.7
Msa0091570	AT3G11260.1	48.333	60	31	0	128	187	24	83	2.72e-12	64.7

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Find 71 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTTGTTTCAGAAATT+TGG	0.112745	1_2:-73707297	None:intergenic
AAATCACATCCAGACAGAGG+TGG	0.644627	1_2:+73707164	Msa0091570:CDS
AAATGGTGAACATGATGGAA+TGG	0.621193	1_2:+73705549	Msa0091570:CDS
AACATATTCCGTGTTTCCAT+CGG	0.539020	1_2:+73707546	Msa0091570:CDS
AACATTTATATGCCAATCAC+TGG	0.465123	1_2:-73708380	None:intergenic
AACTAGTAACACTGAATCAG+AGG	0.600354	1_2:+73707375	Msa0091570:CDS
AACTGGAAGTAAAATATTCG+TGG	0.496148	1_2:-73708489	None:intergenic
AATGTTATTACATCATATTT+TGG	0.286215	1_2:+73708397	Msa0091570:three_prime_UTR
AATTGTAGTCCTCTGCTTGC+TGG	0.362368	1_2:-73708202	None:intergenic
AATTTGGCAGGTTGATATTT+TGG	0.169604	1_2:+73708221	Msa0091570:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAACAACAAGTACAGAAT+GGG	+	chr1_2:73705573-73705592	Msa0091570:CDS	30.0%
TTGTTGTAGATGTGTATGTT+TGG	+	chr1_2:73706048-73706067	Msa0091570:intron	30.0%
CACAGAAAACAAAACCATTT+AGG	+	chr1_2:73706348-73706367	Msa0091570:intron	30.0%
AAAACAAAACCATTTAGGGA+AGG	+	chr1_2:73706353-73706372	Msa0091570:intron	30.0%
AAACAAAACCATTTAGGGAA+GGG	+	chr1_2:73706354-73706373	Msa0091570:intron	30.0%
TGATTATCACTAGAACATGA+TGG	-	chr1_2:73706439-73706458	None:intergenic	30.0%
AAAAAAAAAATTGGGGGACA+AGG	-	chr1_2:73706786-73706805	None:intergenic	30.0%
TCCAAGCAAAGAAAAAATCA+AGG	+	chr1_2:73707246-73707265	Msa0091570:CDS	30.0%
AACATTTATATGCCAATCAC+TGG	-	chr1_2:73708383-73708402	None:intergenic	30.0%
ACTGGAAGTAAAATATTCGT+GGG	-	chr1_2:73708491-73708510	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	73705371	73708599	73705371	ID=Msa0091570;Name=Msa0091570
chr1_2	mRNA	73705371	73708599	73705371	ID=Msa0091570-mRNA-1;Parent=Msa0091570;Name=Msa0091570-mRNA-1;_AED=0.03;_eAED=0.03;_QI=51\|1\|1\|1\|1\|1\|3\|364\|307
chr1_2	exon	73705371	73705734	73705371	ID=Msa0091570-mRNA-1:exon:25898;Parent=Msa0091570-mRNA-1
chr1_2	exon	73707113	73707637	73707113	ID=Msa0091570-mRNA-1:exon:25899;Parent=Msa0091570-mRNA-1
chr1_2	exon	73708150	73708599	73708150	ID=Msa0091570-mRNA-1:exon:25900;Parent=Msa0091570-mRNA-1
chr1_2	five_prime_UTR	73705371	73705421	73705371	ID=Msa0091570-mRNA-1:five_prime_utr;Parent=Msa0091570-mRNA-1
chr1_2	CDS	73705422	73705734	73705422	ID=Msa0091570-mRNA-1:cds;Parent=Msa0091570-mRNA-1
chr1_2	CDS	73707113	73707637	73707113	ID=Msa0091570-mRNA-1:cds;Parent=Msa0091570-mRNA-1
chr1_2	CDS	73708150	73708235	73708150	ID=Msa0091570-mRNA-1:cds;Parent=Msa0091570-mRNA-1
chr1_2	three_prime_UTR	73708236	73708599	73708236	ID=Msa0091570-mRNA-1:three_prime_utr;Parent=Msa0091570-mRNA-1

Gene Sequence

>Msa0091570

ATGTTTGTGTCTTTTGTCTCTTTCTTACTTTGTTTTTTTGCTGACTTTTGCGTTGCACACACTCTCTCTCTCTCTCTCTCTCTCTGTGATAAAAATCATTTGTGTCTGTCTGTGAGTAAGAGAGAGAAAATGGTGAACATGATGGAATGGCAGAAACAACAAGTACAGAATGGGAATGTCGAAGCGATGTATGTTAAGGTGATGACTGATGAACAATTGGAAACTCTGAGGAAACAAATTGCTGTTTATGCTACCATTTGTGAACAGCTTGTTGAGATGCATAAAACTCTCTCTGCTCAACAAGATCTTGCTGGGGTTAGGCTGGGGAATTTATACTGCGACTCATTGATGACAGCTGGTCACAAAATCACATCCAGACAGAGGTGGACTCCTACACCGGTTCAGCTCCAGATTCTTGAGCGTATATTCGATCAGGGAAATGGAACTCCAAGCAAAGAAAAAATCAAGGAGATTGCTACTGAACTCAGCCAGCATGGCCAAATTTCTGAAACAAATGTTTATAATTGGTTCCAAAATAGGCGTGCTAGATCAAAAAGAAAAATGCAAAATGGGGGAACTAGTAACACTGAATCAGAGGTAGAGACTGAGGTTGATTCCAAGGATAAGAAGACAAAACCAGAGGAATTTCATTCTCAACAAAATGCTGCTCTAGGGGATGAAAATTTGTGCTACCAGAACCAAGAAAAATGCTCTGAATTGCAGTACTTGAATCATGATTCTAACAAAACATATTCCGTGTTTCCATCGGATGGCGGTATAAGATCCACCAGAAATTTGAGTGGCATGTCTCTTTATGATGAAGTGCTATCAAACTCAAGGAATGACTATCTAGCTGGAAAAATGGAAGTATCTGGGAGTTACAATATATACCAGCAAGCAGAGGACTACAATTTGGCAGGTTGA

Protein sequence

>Msa0091570

MFVSFVSFLLCFFADFCVAHTLSLSLSLCDKNHLCLSVSKREKMVNMMEWQKQQVQNGNVEAMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLSAQQDLAGVRLGNLYCDSLMTAGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRKMQNGGTSNTESEVETEVDSKDKKTKPEEFHSQQNAALGDENLCYQNQEKCSELQYLNHDSNKTYSVFPSDGGIRSTRNLSGMSLYDEVLSNSRNDYLAGKMEVSGSYNIYQQAEDYNLAG*