AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1420290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420290 MtrunA17_Chr5g0403961 67.213 61 14 1 1 61 1 55 1.16e-19 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 82 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAAGATTGGAAGTTCTT+TGG 0.220146 tig0024770:-71030 Msa1420290:three_prime_UTR
CATATCGTTCAACCGTTTCT+AGG 0.229849 tig0024770:-71629 Msa1420290:five_prime_UTR
AGAGTGCAATGAAGCAATTT+TGG 0.237788 tig0024770:-70083 Msa1420290:three_prime_UTR
TACATGATCTACTAATTTCT+TGG 0.278933 tig0024770:+70215 None:intergenic
GTAGATCCGGTGCTGAAATA+TGG 0.292897 tig0024770:-71187 Msa1420290:CDS
ATGAAGATTGGAAGTTCTTT+GGG 0.296027 tig0024770:-71029 Msa1420290:three_prime_UTR
TGGATGTAGGATATAACTTT+AGG 0.315945 tig0024770:-70994 Msa1420290:three_prime_UTR
TAGATCTCAGCGGTGAATTA+TGG 0.318563 tig0024770:-71117 Msa1420290:three_prime_UTR
TAGTTTGATTGATTTACTAA+TGG 0.324398 tig0024770:-69484 Msa1420290:three_prime_UTR
TTCTTTATTCATACTGTGTA+TGG 0.326693 tig0024770:-69731 Msa1420290:three_prime_UTR
TATTGATCTTGAATCAATAA+AGG 0.337869 tig0024770:+71540 None:intergenic
GTCAGGTGCGCTTGCTTGGC+AGG 0.350358 tig0024770:-70896 Msa1420290:three_prime_UTR
TATGTTTATATGATGAAGAT+TGG 0.365484 tig0024770:-71041 Msa1420290:three_prime_UTR
CCATGTCAGGTGCGCTTGCT+TGG 0.370305 tig0024770:-70900 Msa1420290:three_prime_UTR
TTTGTTCAAAATGCAAATAC+AGG 0.372836 tig0024770:+69619 None:intergenic
CTCTCTTCCATTCCTCCCAT+TGG 0.378687 tig0024770:+70102 None:intergenic
AACGGTTGAACGATATGAAT+TGG 0.380241 tig0024770:+71635 None:intergenic
CATTATTGTGATTAATACTA+AGG 0.393137 tig0024770:-70027 Msa1420290:three_prime_UTR
AAATTAGTAGATCATGTATC+AGG 0.402589 tig0024770:-70210 Msa1420290:three_prime_UTR
CATCCGACCTTTGCCATGTC+AGG 0.416093 tig0024770:-70913 Msa1420290:three_prime_UTR
CAAAATCCATTATAAAAGAA+AGG 0.431202 tig0024770:-71669 Msa1420290:five_prime_UTR
GATTCAGATGTTTCAGATCT+CGG 0.432678 tig0024770:-71074 Msa1420290:three_prime_UTR
TGTAAATTCATCAAGGGACT+TGG 0.453964 tig0024770:-70177 Msa1420290:three_prime_UTR
GACGAACAAGTTCACACCTC+TGG 0.455850 tig0024770:+71313 None:intergenic
ATTGAAGGAAAGAAGGAAGA+AGG 0.460468 tig0024770:+71594 None:intergenic
CCAAGCAAGCGCACCTGACA+TGG 0.466895 tig0024770:+70900 None:intergenic
ACTAAGGTGAAGATGACTTC+GGG 0.472109 tig0024770:-70011 Msa1420290:three_prime_UTR
TTGAAGGAAAGAAGGAAGAA+GGG 0.479770 tig0024770:+71595 None:intergenic
AAAATCCATTATAAAAGAAA+GGG 0.480170 tig0024770:-71668 Msa1420290:five_prime_UTR
TAGACGAGATCTGAGATTGA+AGG 0.485194 tig0024770:+71579 None:intergenic
AGGTGTGAACTTGTTCGTCT+TGG 0.490491 tig0024770:-71309 Msa1420290:intron
ATCTGAGATTGAAGGAAAGA+AGG 0.501636 tig0024770:+71587 None:intergenic
GATCTTGAATCAATAAAGGT+TGG 0.501834 tig0024770:+71544 None:intergenic
AAATGCAAATACAGGTTCTC+CGG 0.505366 tig0024770:+69627 None:intergenic
ATATCGTTCAACCGTTTCTA+GGG 0.506871 tig0024770:-71628 Msa1420290:five_prime_UTR
GTCATCCTCTTCATCCATTG+AGG 0.527772 tig0024770:-69865 Msa1420290:three_prime_UTR
GCTGAGATTAGTTGTGTTGA+CGG 0.528897 tig0024770:+71704 None:intergenic
ATTTATCGACTAGCACCAAT+GGG 0.529092 tig0024770:-70117 Msa1420290:three_prime_UTR
CCTTGAGGAGATCGTAGATC+CGG 0.532855 tig0024770:-71200 Msa1420290:CDS
GAATCGCCATATTTCAGCAC+CGG 0.537367 tig0024770:+71181 None:intergenic
TAGCTTCGATGAATCCGTCC+GGG 0.547769 tig0024770:+70716 None:intergenic
TTGAATCAATAAAGGTTGGA+AGG 0.550125 tig0024770:+71548 None:intergenic
CACACACGAGAGAAGATCCC+GGG 0.550552 tig0024770:+70813 None:intergenic
TTAGCTTCGATGAATCCGTC+CGG 0.551236 tig0024770:+70715 None:intergenic
ACTAGCACCAATGGGAGGAA+TGG 0.553780 tig0024770:-70109 Msa1420290:three_prime_UTR
CCATTGAGGAAAAGATGACT+AGG 0.555063 tig0024770:-69851 Msa1420290:three_prime_UTR
GGGTGGGATATAATGGATGT+AGG 0.555185 tig0024770:-71007 Msa1420290:three_prime_UTR
AATCACAATAATGATTGAAG+AGG 0.555949 tig0024770:+70037 None:intergenic
ATAGCTCTGTAAATTCATCA+AGG 0.557269 tig0024770:-70184 Msa1420290:three_prime_UTR
GATTTATCGACTAGCACCAA+TGG 0.559545 tig0024770:-70118 Msa1420290:three_prime_UTR
CGCTCTACTCACAATAGCCC+CGG 0.565882 tig0024770:-70734 Msa1420290:three_prime_UTR
CAAGATCAATATAGATCCGA+TGG 0.566520 tig0024770:-71528 Msa1420290:exon
TACTAAGGTGAAGATGACTT+CGG 0.568061 tig0024770:-70012 Msa1420290:three_prime_UTR
GAATCGTGAAACCCTAGAAA+CGG 0.568617 tig0024770:+71617 None:intergenic
CGGATGACAAGATCACTCTC+AGG 0.573514 tig0024770:+70930 None:intergenic
TTGATGCGCTGAGCGTATGA+AGG 0.575533 tig0024770:-70960 Msa1420290:three_prime_UTR
TTCATACGCTCAGCGCATCA+AGG 0.578674 tig0024770:+70962 None:intergenic
ACAATAATGATTGAAGAGGA+TGG 0.583973 tig0024770:+70041 None:intergenic
ATCAGCATGTAGATCTCCAT+CGG 0.587084 tig0024770:+71512 None:intergenic
ATAAGGAAAGGAACAAGGCA+AGG 0.588509 tig0024770:+70782 None:intergenic
ACACACACGAGAGAAGATCC+CGG 0.591246 tig0024770:+70812 None:intergenic
TTCCTAAGTCAAGGCTCTGG+AGG 0.594153 tig0024770:-71250 Msa1420290:intron
GGGATCTTCTCTCGTGTGTG+TGG 0.604344 tig0024770:-70810 Msa1420290:three_prime_UTR
CACCGCTGAGATCTACAACT+CGG 0.618056 tig0024770:+71125 None:intergenic
CCGGATCTACGATCTCCTCA+AGG 0.624315 tig0024770:+71200 None:intergenic
AAGCGCACCTGACATGGCAA+AGG 0.629352 tig0024770:+70906 None:intergenic
TAGCTCTGTAAATTCATCAA+GGG 0.634789 tig0024770:-70183 Msa1420290:three_prime_UTR
GATTAGTTGTGTTGACGGTG+TGG 0.639961 tig0024770:+71709 None:intergenic
AAAGAATAAGGAAAGGAACA+AGG 0.645363 tig0024770:+70777 None:intergenic
GATGGAGATCTACATGCTGA+TGG 0.646240 tig0024770:-71510 Msa1420290:CDS
GCACCTGACATGGCAAAGGT+CGG 0.647464 tig0024770:+70910 None:intergenic
GAAGATTGGAAGTTCTTTGG+GGG 0.653775 tig0024770:-71027 Msa1420290:three_prime_UTR
TGAAGATTGGAAGTTCTTTG+GGG 0.662314 tig0024770:-71028 Msa1420290:three_prime_UTR
AGCTTCGATGAATCCGTCCG+GGG 0.673406 tig0024770:+70717 None:intergenic
GCATCAGATCTACGATCCAG+AGG 0.674565 tig0024770:-71329 Msa1420290:CDS
CTACTCACAATAGCCCCGGA+CGG 0.678589 tig0024770:-70730 Msa1420290:three_prime_UTR
AATCTCAAGACTCAATAACA+AGG 0.690550 tig0024770:-70694 Msa1420290:intron
TGTGAGTAGAGCGAGATGCG+TGG 0.699112 tig0024770:+70744 None:intergenic
GGAGATCTACATGCTGATGG+TGG 0.705213 tig0024770:-71507 Msa1420290:CDS
TATCGACTAGCACCAATGGG+AGG 0.705230 tig0024770:-70114 Msa1420290:three_prime_UTR
GGTATGGTGGTGGATCCTTG+AGG 0.722075 tig0024770:-71215 Msa1420290:CDS
TTCCGAGTTGTAGATCTCAG+CGG 0.734183 tig0024770:-71127 Msa1420290:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATAAAAAAAGTTTTGT+TGG - tig0024770:70320-70339 Msa1420290:intron 10.0%
!! AAAATATTGCAAAATAAATT+AGG + tig0024770:70615-70634 None:intergenic 10.0%
!!! TTTTGCAATATTTTTTAATA+AGG - tig0024770:70621-70640 Msa1420290:intron 10.0%
!! AAATTAGATTCAATATAATT+TGG + tig0024770:70770-70789 None:intergenic 10.0%
!!! AATAATAAAAAAAGTTTTGT+TGG - tig0024770:70320-70339 Msa1420290:intron 10.0%
!! AAAATATTGCAAAATAAATT+AGG + tig0024770:70615-70634 None:intergenic 10.0%
!!! TTTTGCAATATTTTTTAATA+AGG - tig0024770:70621-70640 Msa1420290:intron 10.0%
!! AAATTAGATTCAATATAATT+TGG + tig0024770:70770-70789 None:intergenic 10.0%
!! AAAATCCATTATAAAAGAAA+GGG - tig0024770:69516-69535 Msa1420290:three_prime_UTR 15.0%
!! TAAATAAAAAGAATAAGGAA+AGG + tig0024770:70417-70436 None:intergenic 15.0%
!! GGTAATAAATAAAAAGAATA+AGG + tig0024770:70422-70441 None:intergenic 15.0%
!!! TTAGTTTTTAAATTAAGTTC+AGG - tig0024770:71607-71626 Msa1420290:five_prime_UTR 15.0%
!! AAAATCCATTATAAAAGAAA+GGG - tig0024770:69516-69535 Msa1420290:three_prime_UTR 15.0%
!! TAAATAAAAAGAATAAGGAA+AGG + tig0024770:70417-70436 None:intergenic 15.0%
!! GGTAATAAATAAAAAGAATA+AGG + tig0024770:70422-70441 None:intergenic 15.0%
!!! TTAGTTTTTAAATTAAGTTC+AGG - tig0024770:71607-71626 Msa1420290:five_prime_UTR 15.0%
!!! CTTTCTTTTATAATGGATTT+TGG + tig0024770:69517-69536 None:intergenic 20.0%
!! CAAAATCCATTATAAAAGAA+AGG - tig0024770:69515-69534 Msa1420290:three_prime_UTR 20.0%
!! TATTGATCTTGAATCAATAA+AGG + tig0024770:69647-69666 None:intergenic 20.0%
!! TATGTTTATATGATGAAGAT+TGG - tig0024770:70143-70162 Msa1420290:three_prime_UTR 20.0%
!!! TATTTTTTAATAAGGAATCG+TGG - tig0024770:70629-70648 Msa1420290:intron 20.0%
!! CATTATTGTGATTAATACTA+AGG - tig0024770:71157-71176 Msa1420290:exon 20.0%
!! CACAAAAAAAATGTAATCAA+GGG + tig0024770:71485-71504 None:intergenic 20.0%
!!! TAGTTTGATTGATTTACTAA+TGG - tig0024770:71700-71719 Msa1420290:five_prime_UTR 20.0%
!!! CTTTCTTTTATAATGGATTT+TGG + tig0024770:69517-69536 None:intergenic 20.0%
!! CAAAATCCATTATAAAAGAA+AGG - tig0024770:69515-69534 Msa1420290:three_prime_UTR 20.0%
!! TATTGATCTTGAATCAATAA+AGG + tig0024770:69647-69666 None:intergenic 20.0%
!! TATGTTTATATGATGAAGAT+TGG - tig0024770:70143-70162 Msa1420290:three_prime_UTR 20.0%
!!! TATTTTTTAATAAGGAATCG+TGG - tig0024770:70629-70648 Msa1420290:intron 20.0%
!! CATTATTGTGATTAATACTA+AGG - tig0024770:71157-71176 Msa1420290:exon 20.0%
!! CACAAAAAAAATGTAATCAA+GGG + tig0024770:71485-71504 None:intergenic 20.0%
!!! TAGTTTGATTGATTTACTAA+TGG - tig0024770:71700-71719 Msa1420290:five_prime_UTR 20.0%
!!! TATAATGGATTTTGGTAGAA+TGG + tig0024770:69509-69528 None:intergenic 25.0%
! AAGAAAATATGATCGAAAAC+AGG + tig0024770:69719-69738 None:intergenic 25.0%
! TTGTACACTATCATTCTTAA+TGG - tig0024770:70858-70877 Msa1420290:three_prime_UTR 25.0%
! TACATGATCTACTAATTTCT+TGG + tig0024770:70972-70991 None:intergenic 25.0%
! AAATTAGTAGATCATGTATC+AGG - tig0024770:70974-70993 Msa1420290:three_prime_UTR 25.0%
! AATCACAATAATGATTGAAG+AGG + tig0024770:71150-71169 None:intergenic 25.0%
! TTCTTTATTCATACTGTGTA+TGG - tig0024770:71453-71472 Msa1420290:intron 25.0%
! AAAAAAATGTAATCAAGGGA+GGG + tig0024770:71481-71500 None:intergenic 25.0%
! AAAAAAAATGTAATCAAGGG+AGG + tig0024770:71482-71501 None:intergenic 25.0%
! CCACAAAAAAAATGTAATCA+AGG + tig0024770:71486-71505 None:intergenic 25.0%
!!! CCTTGATTACATTTTTTTTG+TGG - tig0024770:71483-71502 Msa1420290:intron 25.0%
!! GAATGCATTTTATGTTTTAC+CGG - tig0024770:71538-71557 Msa1420290:five_prime_UTR 25.0%
! TTTGTTCAAAATGCAAATAC+AGG + tig0024770:71568-71587 None:intergenic 25.0%
!! ATTTTGAACAAATACACAAG+CGG - tig0024770:71576-71595 Msa1420290:five_prime_UTR 25.0%
!!! TATAATGGATTTTGGTAGAA+TGG + tig0024770:69509-69528 None:intergenic 25.0%
! AAGAAAATATGATCGAAAAC+AGG + tig0024770:69719-69738 None:intergenic 25.0%
! TTGTACACTATCATTCTTAA+TGG - tig0024770:70858-70877 Msa1420290:three_prime_UTR 25.0%
! TACATGATCTACTAATTTCT+TGG + tig0024770:70972-70991 None:intergenic 25.0%
! AAATTAGTAGATCATGTATC+AGG - tig0024770:70974-70993 Msa1420290:three_prime_UTR 25.0%
! AATCACAATAATGATTGAAG+AGG + tig0024770:71150-71169 None:intergenic 25.0%
! TTCTTTATTCATACTGTGTA+TGG - tig0024770:71453-71472 Msa1420290:intron 25.0%
! AAAAAAATGTAATCAAGGGA+GGG + tig0024770:71481-71500 None:intergenic 25.0%
! AAAAAAAATGTAATCAAGGG+AGG + tig0024770:71482-71501 None:intergenic 25.0%
! CCACAAAAAAAATGTAATCA+AGG + tig0024770:71486-71505 None:intergenic 25.0%
!!! CCTTGATTACATTTTTTTTG+TGG - tig0024770:71483-71502 Msa1420290:intron 25.0%
!! GAATGCATTTTATGTTTTAC+CGG - tig0024770:71538-71557 Msa1420290:five_prime_UTR 25.0%
! TTTGTTCAAAATGCAAATAC+AGG + tig0024770:71568-71587 None:intergenic 25.0%
!! ATTTTGAACAAATACACAAG+CGG - tig0024770:71576-71595 Msa1420290:five_prime_UTR 25.0%
! CACAACCCTTTCTTTTATAA+TGG + tig0024770:69524-69543 None:intergenic 30.0%
TTGAATCAATAAAGGTTGGA+AGG + tig0024770:69639-69658 None:intergenic 30.0%
GATCTTGAATCAATAAAGGT+TGG + tig0024770:69643-69662 None:intergenic 30.0%
CGAATGAATTATCTACGAAA+CGG + tig0024770:69910-69929 None:intergenic 30.0%
! ATTCGATTTTTCCTAAGTCA+AGG - tig0024770:69925-69944 Msa1420290:three_prime_UTR 30.0%
ATGAAGATTGGAAGTTCTTT+GGG - tig0024770:70155-70174 Msa1420290:three_prime_UTR 30.0%
TGGATGTAGGATATAACTTT+AGG - tig0024770:70190-70209 Msa1420290:three_prime_UTR 30.0%
AAAGAATAAGGAAAGGAACA+AGG + tig0024770:70410-70429 None:intergenic 30.0%
AATCTCAAGACTCAATAACA+AGG - tig0024770:70490-70509 Msa1420290:intron 30.0%
! ATCTAAAGCAGAAGTTGTAT+CGG - tig0024770:70821-70840 Msa1420290:three_prime_UTR 30.0%
GACAAGCATTTATGAACAAA+AGG + tig0024770:70887-70906 None:intergenic 30.0%
TGCTTGTCAAATGTAAACTA+TGG - tig0024770:70899-70918 Msa1420290:three_prime_UTR 30.0%
! ATAGCTCTGTAAATTCATCA+AGG - tig0024770:71000-71019 Msa1420290:three_prime_UTR 30.0%
! TAGCTCTGTAAATTCATCAA+GGG - tig0024770:71001-71020 Msa1420290:three_prime_UTR 30.0%
ACAATAATGATTGAAGAGGA+TGG + tig0024770:71146-71165 None:intergenic 30.0%
!! TTTTCACTTGGTTCAAGTTA+AGG - tig0024770:71358-71377 Msa1420290:intron 30.0%
AAAAAATGTAATCAAGGGAG+GGG + tig0024770:71480-71499 None:intergenic 30.0%
!! TTTTTGTGGATTGAAGTTTG+AGG - tig0024770:71497-71516 Msa1420290:CDS 30.0%
!! TTTTGTGGATTGAAGTTTGA+GGG - tig0024770:71498-71517 Msa1420290:CDS 30.0%
! CACAACCCTTTCTTTTATAA+TGG + tig0024770:69524-69543 None:intergenic 30.0%
TTGAATCAATAAAGGTTGGA+AGG + tig0024770:69639-69658 None:intergenic 30.0%
GATCTTGAATCAATAAAGGT+TGG + tig0024770:69643-69662 None:intergenic 30.0%
CGAATGAATTATCTACGAAA+CGG + tig0024770:69910-69929 None:intergenic 30.0%
! ATTCGATTTTTCCTAAGTCA+AGG - tig0024770:69925-69944 Msa1420290:three_prime_UTR 30.0%
ATGAAGATTGGAAGTTCTTT+GGG - tig0024770:70155-70174 Msa1420290:three_prime_UTR 30.0%
TGGATGTAGGATATAACTTT+AGG - tig0024770:70190-70209 Msa1420290:three_prime_UTR 30.0%
AAAGAATAAGGAAAGGAACA+AGG + tig0024770:70410-70429 None:intergenic 30.0%
AATCTCAAGACTCAATAACA+AGG - tig0024770:70490-70509 Msa1420290:intron 30.0%
! ATCTAAAGCAGAAGTTGTAT+CGG - tig0024770:70821-70840 Msa1420290:three_prime_UTR 30.0%
GACAAGCATTTATGAACAAA+AGG + tig0024770:70887-70906 None:intergenic 30.0%
TGCTTGTCAAATGTAAACTA+TGG - tig0024770:70899-70918 Msa1420290:three_prime_UTR 30.0%
! ATAGCTCTGTAAATTCATCA+AGG - tig0024770:71000-71019 Msa1420290:three_prime_UTR 30.0%
! TAGCTCTGTAAATTCATCAA+GGG - tig0024770:71001-71020 Msa1420290:three_prime_UTR 30.0%
ACAATAATGATTGAAGAGGA+TGG + tig0024770:71146-71165 None:intergenic 30.0%
!! TTTTCACTTGGTTCAAGTTA+AGG - tig0024770:71358-71377 Msa1420290:intron 30.0%
AAAAAATGTAATCAAGGGAG+GGG + tig0024770:71480-71499 None:intergenic 30.0%
!! TTTTTGTGGATTGAAGTTTG+AGG - tig0024770:71497-71516 Msa1420290:CDS 30.0%
!! TTTTGTGGATTGAAGTTTGA+GGG - tig0024770:71498-71517 Msa1420290:CDS 30.0%
!! ATGGATTTTGGTAGAATGGA+CGG + tig0024770:69505-69524 None:intergenic 35.0%
AACGGTTGAACGATATGAAT+TGG + tig0024770:69552-69571 None:intergenic 35.0%
ATATCGTTCAACCGTTTCTA+GGG - tig0024770:69556-69575 Msa1420290:three_prime_UTR 35.0%
TTGAAGGAAAGAAGGAAGAA+GGG + tig0024770:69592-69611 None:intergenic 35.0%
ATTGAAGGAAAGAAGGAAGA+AGG + tig0024770:69593-69612 None:intergenic 35.0%
! ATCTGAGATTGAAGGAAAGA+AGG + tig0024770:69600-69619 None:intergenic 35.0%
CAAGATCAATATAGATCCGA+TGG - tig0024770:69656-69675 Msa1420290:three_prime_UTR 35.0%
!!! GAGGTATTTTTTTGCAGGTA+TGG - tig0024770:69953-69972 Msa1420290:three_prime_UTR 35.0%
!!! GTATTTTTTTGCAGGTATGG+TGG - tig0024770:69956-69975 Msa1420290:three_prime_UTR 35.0%
GATTCAGATGTTTCAGATCT+CGG - tig0024770:70110-70129 Msa1420290:three_prime_UTR 35.0%
GATGAAGATTGGAAGTTCTT+TGG - tig0024770:70154-70173 Msa1420290:three_prime_UTR 35.0%
TGAAGATTGGAAGTTCTTTG+GGG - tig0024770:70156-70175 Msa1420290:three_prime_UTR 35.0%
! TCTAAAGCAGAAGTTGTATC+GGG - tig0024770:70822-70841 Msa1420290:three_prime_UTR 35.0%
TGTAAATTCATCAAGGGACT+TGG - tig0024770:71007-71026 Msa1420290:three_prime_UTR 35.0%
! ATTTATCGACTAGCACCAAT+GGG - tig0024770:71067-71086 Msa1420290:three_prime_UTR 35.0%
! AGAGTGCAATGAAGCAATTT+TGG - tig0024770:71101-71120 Msa1420290:three_prime_UTR 35.0%
! GAGTGCAATGAAGCAATTTT+GGG - tig0024770:71102-71121 Msa1420290:three_prime_UTR 35.0%
TACTAAGGTGAAGATGACTT+CGG - tig0024770:71172-71191 Msa1420290:CDS 35.0%
!!! GATGACTAGGTTTTTTCACT+TGG - tig0024770:71346-71365 Msa1420290:CDS 35.0%
AAATGCAAATACAGGTTCTC+CGG + tig0024770:71560-71579 None:intergenic 35.0%
!! ATGGATTTTGGTAGAATGGA+CGG + tig0024770:69505-69524 None:intergenic 35.0%
AACGGTTGAACGATATGAAT+TGG + tig0024770:69552-69571 None:intergenic 35.0%
ATATCGTTCAACCGTTTCTA+GGG - tig0024770:69556-69575 Msa1420290:three_prime_UTR 35.0%
TTGAAGGAAAGAAGGAAGAA+GGG + tig0024770:69592-69611 None:intergenic 35.0%
ATTGAAGGAAAGAAGGAAGA+AGG + tig0024770:69593-69612 None:intergenic 35.0%
! ATCTGAGATTGAAGGAAAGA+AGG + tig0024770:69600-69619 None:intergenic 35.0%
CAAGATCAATATAGATCCGA+TGG - tig0024770:69656-69675 Msa1420290:three_prime_UTR 35.0%
!!! GAGGTATTTTTTTGCAGGTA+TGG - tig0024770:69953-69972 Msa1420290:three_prime_UTR 35.0%
!!! GTATTTTTTTGCAGGTATGG+TGG - tig0024770:69956-69975 Msa1420290:three_prime_UTR 35.0%
GATTCAGATGTTTCAGATCT+CGG - tig0024770:70110-70129 Msa1420290:three_prime_UTR 35.0%
GATGAAGATTGGAAGTTCTT+TGG - tig0024770:70154-70173 Msa1420290:three_prime_UTR 35.0%
TGAAGATTGGAAGTTCTTTG+GGG - tig0024770:70156-70175 Msa1420290:three_prime_UTR 35.0%
! TCTAAAGCAGAAGTTGTATC+GGG - tig0024770:70822-70841 Msa1420290:three_prime_UTR 35.0%
TGTAAATTCATCAAGGGACT+TGG - tig0024770:71007-71026 Msa1420290:three_prime_UTR 35.0%
! ATTTATCGACTAGCACCAAT+GGG - tig0024770:71067-71086 Msa1420290:three_prime_UTR 35.0%
! AGAGTGCAATGAAGCAATTT+TGG - tig0024770:71101-71120 Msa1420290:three_prime_UTR 35.0%
! GAGTGCAATGAAGCAATTTT+GGG - tig0024770:71102-71121 Msa1420290:three_prime_UTR 35.0%
TACTAAGGTGAAGATGACTT+CGG - tig0024770:71172-71191 Msa1420290:CDS 35.0%
!!! GATGACTAGGTTTTTTCACT+TGG - tig0024770:71346-71365 Msa1420290:CDS 35.0%
AAATGCAAATACAGGTTCTC+CGG + tig0024770:71560-71579 None:intergenic 35.0%
! GCTGAGATTAGTTGTGTTGA+CGG + tig0024770:69483-69502 None:intergenic 40.0%
CATATCGTTCAACCGTTTCT+AGG - tig0024770:69555-69574 Msa1420290:three_prime_UTR 40.0%
GAATCGTGAAACCCTAGAAA+CGG + tig0024770:69570-69589 None:intergenic 40.0%
! TAGACGAGATCTGAGATTGA+AGG + tig0024770:69608-69627 None:intergenic 40.0%
ATCAGCATGTAGATCTCCAT+CGG + tig0024770:69675-69694 None:intergenic 40.0%
! AACTTGTTCGTCTTGGTTTC+TGG - tig0024770:69882-69901 Msa1420290:three_prime_UTR 40.0%
! TTTTTCCTAAGTCAAGGCTC+TGG - tig0024770:69931-69950 Msa1420290:three_prime_UTR 40.0%
!!! CTCTGGAGGTATTTTTTTGC+AGG - tig0024770:69948-69967 Msa1420290:three_prime_UTR 40.0%
!!! TTTTTTTGCAGGTATGGTGG+TGG - tig0024770:69959-69978 Msa1420290:three_prime_UTR 40.0%
TAGATCTCAGCGGTGAATTA+TGG - tig0024770:70067-70086 Msa1420290:three_prime_UTR 40.0%
GAAGATTGGAAGTTCTTTGG+GGG - tig0024770:70157-70176 Msa1420290:three_prime_UTR 40.0%
ATAAGGAAAGGAACAAGGCA+AGG + tig0024770:70405-70424 None:intergenic 40.0%
CTAAAGCAGAAGTTGTATCG+GGG - tig0024770:70823-70842 Msa1420290:three_prime_UTR 40.0%
GTAAACTATGGTTTCCGCTT+TGG - tig0024770:70911-70930 Msa1420290:three_prime_UTR 40.0%
ACAAAGTACAACAGCCAAAG+CGG + tig0024770:70928-70947 None:intergenic 40.0%
! GATTTATCGACTAGCACCAA+TGG - tig0024770:71066-71085 Msa1420290:three_prime_UTR 40.0%
ACTAAGGTGAAGATGACTTC+GGG - tig0024770:71173-71192 Msa1420290:CDS 40.0%
! CTTTTCCTCAATGGATGAAG+AGG + tig0024770:71327-71346 None:intergenic 40.0%
! CCTAGTCATCTTTTCCTCAA+TGG + tig0024770:71336-71355 None:intergenic 40.0%
CCATTGAGGAAAAGATGACT+AGG - tig0024770:71333-71352 Msa1420290:CDS 40.0%
! GCTGAGATTAGTTGTGTTGA+CGG + tig0024770:69483-69502 None:intergenic 40.0%
CATATCGTTCAACCGTTTCT+AGG - tig0024770:69555-69574 Msa1420290:three_prime_UTR 40.0%
GAATCGTGAAACCCTAGAAA+CGG + tig0024770:69570-69589 None:intergenic 40.0%
! TAGACGAGATCTGAGATTGA+AGG + tig0024770:69608-69627 None:intergenic 40.0%
ATCAGCATGTAGATCTCCAT+CGG + tig0024770:69675-69694 None:intergenic 40.0%
! AACTTGTTCGTCTTGGTTTC+TGG - tig0024770:69882-69901 Msa1420290:three_prime_UTR 40.0%
! TTTTTCCTAAGTCAAGGCTC+TGG - tig0024770:69931-69950 Msa1420290:three_prime_UTR 40.0%
!!! CTCTGGAGGTATTTTTTTGC+AGG - tig0024770:69948-69967 Msa1420290:three_prime_UTR 40.0%
!!! TTTTTTTGCAGGTATGGTGG+TGG - tig0024770:69959-69978 Msa1420290:three_prime_UTR 40.0%
TAGATCTCAGCGGTGAATTA+TGG - tig0024770:70067-70086 Msa1420290:three_prime_UTR 40.0%
GAAGATTGGAAGTTCTTTGG+GGG - tig0024770:70157-70176 Msa1420290:three_prime_UTR 40.0%
ATAAGGAAAGGAACAAGGCA+AGG + tig0024770:70405-70424 None:intergenic 40.0%
CTAAAGCAGAAGTTGTATCG+GGG - tig0024770:70823-70842 Msa1420290:three_prime_UTR 40.0%
GTAAACTATGGTTTCCGCTT+TGG - tig0024770:70911-70930 Msa1420290:three_prime_UTR 40.0%
ACAAAGTACAACAGCCAAAG+CGG + tig0024770:70928-70947 None:intergenic 40.0%
! GATTTATCGACTAGCACCAA+TGG - tig0024770:71066-71085 Msa1420290:three_prime_UTR 40.0%
ACTAAGGTGAAGATGACTTC+GGG - tig0024770:71173-71192 Msa1420290:CDS 40.0%
! CTTTTCCTCAATGGATGAAG+AGG + tig0024770:71327-71346 None:intergenic 40.0%
! CCTAGTCATCTTTTCCTCAA+TGG + tig0024770:71336-71355 None:intergenic 40.0%
CCATTGAGGAAAAGATGACT+AGG - tig0024770:71333-71352 Msa1420290:CDS 40.0%
! GATTAGTTGTGTTGACGGTG+TGG + tig0024770:69478-69497 None:intergenic 45.0%
GATGGAGATCTACATGCTGA+TGG - tig0024770:69674-69693 Msa1420290:three_prime_UTR 45.0%
!!! TGCTGATGGTGGTTTTGTTC+AGG - tig0024770:69688-69707 Msa1420290:three_prime_UTR 45.0%
! AGGTGTGAACTTGTTCGTCT+TGG - tig0024770:69875-69894 Msa1420290:three_prime_UTR 45.0%
! GTAGATCCGGTGCTGAAATA+TGG - tig0024770:69997-70016 Msa1420290:three_prime_UTR 45.0%
GAATCGCCATATTTCAGCAC+CGG + tig0024770:70006-70025 None:intergenic 45.0%
TTCCGAGTTGTAGATCTCAG+CGG - tig0024770:70057-70076 Msa1420290:three_prime_UTR 45.0%
! ATTGGAAGTTCTTTGGGGGT+GGG - tig0024770:70161-70180 Msa1420290:three_prime_UTR 45.0%
! TCTTTGGGGGTGGGATATAA+TGG - tig0024770:70170-70189 Msa1420290:three_prime_UTR 45.0%
!! GGGTGGGATATAATGGATGT+AGG - tig0024770:70177-70196 Msa1420290:three_prime_UTR 45.0%
!!! TGGTTTTGAGAGAGATCGCA+CGG - tig0024770:70340-70359 Msa1420290:intron 45.0%
TTAGCTTCGATGAATCCGTC+CGG + tig0024770:70472-70491 None:intergenic 45.0%
GTCATCCTCTTCATCCATTG+AGG - tig0024770:71319-71338 Msa1420290:CDS 45.0%
! GATTAGTTGTGTTGACGGTG+TGG + tig0024770:69478-69497 None:intergenic 45.0%
GATGGAGATCTACATGCTGA+TGG - tig0024770:69674-69693 Msa1420290:three_prime_UTR 45.0%
!!! TGCTGATGGTGGTTTTGTTC+AGG - tig0024770:69688-69707 Msa1420290:three_prime_UTR 45.0%
! AGGTGTGAACTTGTTCGTCT+TGG - tig0024770:69875-69894 Msa1420290:three_prime_UTR 45.0%
! GTAGATCCGGTGCTGAAATA+TGG - tig0024770:69997-70016 Msa1420290:three_prime_UTR 45.0%
GAATCGCCATATTTCAGCAC+CGG + tig0024770:70006-70025 None:intergenic 45.0%
TTCCGAGTTGTAGATCTCAG+CGG - tig0024770:70057-70076 Msa1420290:three_prime_UTR 45.0%
! ATTGGAAGTTCTTTGGGGGT+GGG - tig0024770:70161-70180 Msa1420290:three_prime_UTR 45.0%
! TCTTTGGGGGTGGGATATAA+TGG - tig0024770:70170-70189 Msa1420290:three_prime_UTR 45.0%
!! GGGTGGGATATAATGGATGT+AGG - tig0024770:70177-70196 Msa1420290:three_prime_UTR 45.0%
!!! TGGTTTTGAGAGAGATCGCA+CGG - tig0024770:70340-70359 Msa1420290:intron 45.0%
TTAGCTTCGATGAATCCGTC+CGG + tig0024770:70472-70491 None:intergenic 45.0%
GTCATCCTCTTCATCCATTG+AGG - tig0024770:71319-71338 Msa1420290:CDS 45.0%
GGAGATCTACATGCTGATGG+TGG - tig0024770:69677-69696 Msa1420290:three_prime_UTR 50.0%
GCATCAGATCTACGATCCAG+AGG - tig0024770:69855-69874 Msa1420290:three_prime_UTR 50.0%
GACGAACAAGTTCACACCTC+TGG + tig0024770:69874-69893 None:intergenic 50.0%
! TTCCTAAGTCAAGGCTCTGG+AGG - tig0024770:69934-69953 Msa1420290:three_prime_UTR 50.0%
TACCTCCAGAGCCTTGACTT+AGG + tig0024770:69939-69958 None:intergenic 50.0%
CCTTGAGGAGATCGTAGATC+CGG - tig0024770:69984-70003 Msa1420290:three_prime_UTR 50.0%
CACCGCTGAGATCTACAACT+CGG + tig0024770:70062-70081 None:intergenic 50.0%
! GATTGGAAGTTCTTTGGGGG+TGG - tig0024770:70160-70179 Msa1420290:three_prime_UTR 50.0%
TTCATACGCTCAGCGCATCA+AGG + tig0024770:70225-70244 None:intergenic 50.0%
TTGATGCGCTGAGCGTATGA+AGG - tig0024770:70224-70243 Msa1420290:three_prime_UTR 50.0%
CGGATGACAAGATCACTCTC+AGG + tig0024770:70257-70276 None:intergenic 50.0%
!!! GGTTTTGAGAGAGATCGCAC+GGG - tig0024770:70341-70360 Msa1420290:intron 50.0%
!!! GTTTTGAGAGAGATCGCACG+GGG - tig0024770:70342-70361 Msa1420290:intron 50.0%
ACACACACGAGAGAAGATCC+CGG + tig0024770:70375-70394 None:intergenic 50.0%
TAGCTTCGATGAATCCGTCC+GGG + tig0024770:70471-70490 None:intergenic 50.0%
! TATCGACTAGCACCAATGGG+AGG - tig0024770:71070-71089 Msa1420290:three_prime_UTR 50.0%
ACTAGCACCAATGGGAGGAA+TGG - tig0024770:71075-71094 Msa1420290:three_prime_UTR 50.0%
CTCTCTTCCATTCCTCCCAT+TGG + tig0024770:71085-71104 None:intergenic 50.0%
GGAGATCTACATGCTGATGG+TGG - tig0024770:69677-69696 Msa1420290:three_prime_UTR 50.0%
GCATCAGATCTACGATCCAG+AGG - tig0024770:69855-69874 Msa1420290:three_prime_UTR 50.0%
GACGAACAAGTTCACACCTC+TGG + tig0024770:69874-69893 None:intergenic 50.0%
! TTCCTAAGTCAAGGCTCTGG+AGG - tig0024770:69934-69953 Msa1420290:three_prime_UTR 50.0%
TACCTCCAGAGCCTTGACTT+AGG + tig0024770:69939-69958 None:intergenic 50.0%
CCTTGAGGAGATCGTAGATC+CGG - tig0024770:69984-70003 Msa1420290:three_prime_UTR 50.0%
CACCGCTGAGATCTACAACT+CGG + tig0024770:70062-70081 None:intergenic 50.0%
! GATTGGAAGTTCTTTGGGGG+TGG - tig0024770:70160-70179 Msa1420290:three_prime_UTR 50.0%
TTCATACGCTCAGCGCATCA+AGG + tig0024770:70225-70244 None:intergenic 50.0%
TTGATGCGCTGAGCGTATGA+AGG - tig0024770:70224-70243 Msa1420290:three_prime_UTR 50.0%
CGGATGACAAGATCACTCTC+AGG + tig0024770:70257-70276 None:intergenic 50.0%
!!! GGTTTTGAGAGAGATCGCAC+GGG - tig0024770:70341-70360 Msa1420290:intron 50.0%
!!! GTTTTGAGAGAGATCGCACG+GGG - tig0024770:70342-70361 Msa1420290:intron 50.0%
ACACACACGAGAGAAGATCC+CGG + tig0024770:70375-70394 None:intergenic 50.0%
TAGCTTCGATGAATCCGTCC+GGG + tig0024770:70471-70490 None:intergenic 50.0%
! TATCGACTAGCACCAATGGG+AGG - tig0024770:71070-71089 Msa1420290:three_prime_UTR 50.0%
ACTAGCACCAATGGGAGGAA+TGG - tig0024770:71075-71094 Msa1420290:three_prime_UTR 50.0%
CTCTCTTCCATTCCTCCCAT+TGG + tig0024770:71085-71104 None:intergenic 50.0%
!! GGTATGGTGGTGGATCCTTG+AGG - tig0024770:69969-69988 Msa1420290:three_prime_UTR 55.0%
CCGGATCTACGATCTCCTCA+AGG + tig0024770:69987-70006 None:intergenic 55.0%
CATCCGACCTTTGCCATGTC+AGG - tig0024770:70271-70290 Msa1420290:intron 55.0%
GCACCTGACATGGCAAAGGT+CGG + tig0024770:70277-70296 None:intergenic 55.0%
AAGCGCACCTGACATGGCAA+AGG + tig0024770:70281-70300 None:intergenic 55.0%
CACACACGAGAGAAGATCCC+GGG + tig0024770:70374-70393 None:intergenic 55.0%
GGGATCTTCTCTCGTGTGTG+TGG - tig0024770:70374-70393 Msa1420290:intron 55.0%
TGTGAGTAGAGCGAGATGCG+TGG + tig0024770:70443-70462 None:intergenic 55.0%
CGCTCTACTCACAATAGCCC+CGG - tig0024770:70450-70469 Msa1420290:intron 55.0%
CTACTCACAATAGCCCCGGA+CGG - tig0024770:70454-70473 Msa1420290:intron 55.0%
AGCTTCGATGAATCCGTCCG+GGG + tig0024770:70470-70489 None:intergenic 55.0%
!! GGTATGGTGGTGGATCCTTG+AGG - tig0024770:69969-69988 Msa1420290:three_prime_UTR 55.0%
CCGGATCTACGATCTCCTCA+AGG + tig0024770:69987-70006 None:intergenic 55.0%
CATCCGACCTTTGCCATGTC+AGG - tig0024770:70271-70290 Msa1420290:intron 55.0%
GCACCTGACATGGCAAAGGT+CGG + tig0024770:70277-70296 None:intergenic 55.0%
AAGCGCACCTGACATGGCAA+AGG + tig0024770:70281-70300 None:intergenic 55.0%
CACACACGAGAGAAGATCCC+GGG + tig0024770:70374-70393 None:intergenic 55.0%
GGGATCTTCTCTCGTGTGTG+TGG - tig0024770:70374-70393 Msa1420290:intron 55.0%
TGTGAGTAGAGCGAGATGCG+TGG + tig0024770:70443-70462 None:intergenic 55.0%
CGCTCTACTCACAATAGCCC+CGG - tig0024770:70450-70469 Msa1420290:intron 55.0%
CTACTCACAATAGCCCCGGA+CGG - tig0024770:70454-70473 Msa1420290:intron 55.0%
AGCTTCGATGAATCCGTCCG+GGG + tig0024770:70470-70489 None:intergenic 55.0%
CCAAGCAAGCGCACCTGACA+TGG + tig0024770:70287-70306 None:intergenic 60.0%
CCATGTCAGGTGCGCTTGCT+TGG - tig0024770:70284-70303 Msa1420290:intron 60.0%
! GATCGCACGGGGTTTTTGCC+CGG - tig0024770:70353-70372 Msa1420290:intron 60.0%
! ATCGCACGGGGTTTTTGCCC+GGG - tig0024770:70354-70373 Msa1420290:intron 60.0%
CCAAGCAAGCGCACCTGACA+TGG + tig0024770:70287-70306 None:intergenic 60.0%
CCATGTCAGGTGCGCTTGCT+TGG - tig0024770:70284-70303 Msa1420290:intron 60.0%
! GATCGCACGGGGTTTTTGCC+CGG - tig0024770:70353-70372 Msa1420290:intron 60.0%
! ATCGCACGGGGTTTTTGCCC+GGG - tig0024770:70354-70373 Msa1420290:intron 60.0%
GTCAGGTGCGCTTGCTTGGC+AGG - tig0024770:70288-70307 Msa1420290:intron 65.0%
GTCAGGTGCGCTTGCTTGGC+AGG - tig0024770:70288-70307 Msa1420290:intron 65.0%
Chromosome Type Strat End Strand Name
tig0024770 gene 69474 71732 69474 ID=Msa1420290;Name=Msa1420290
tig0024770 mRNA 69474 71732 69474 ID=Msa1420290-mRNA-1;Parent=Msa1420290;Name=Msa1420290-mRNA-1;_AED=0.12;_eAED=0.12;_QI=201|0.5|0.6|1|0.75|0.6|5|1241|62
tig0024770 exon 69474 70250 69474 ID=Msa1420290-mRNA-1:exon:1393;Parent=Msa1420290-mRNA-1
tig0024770 exon 70695 71236 70695 ID=Msa1420290-mRNA-1:exon:1392;Parent=Msa1420290-mRNA-1
tig0024770 exon 71251 71259 71251 ID=Msa1420290-mRNA-1:exon:1391;Parent=Msa1420290-mRNA-1
tig0024770 exon 71310 71376 71310 ID=Msa1420290-mRNA-1:exon:1390;Parent=Msa1420290-mRNA-1
tig0024770 exon 71497 71732 71497 ID=Msa1420290-mRNA-1:exon:1389;Parent=Msa1420290-mRNA-1
tig0024770 five_prime_UTR 71532 71732 71532 ID=Msa1420290-mRNA-1:five_prime_utr;Parent=Msa1420290-mRNA-1
tig0024770 CDS 71497 71531 71497 ID=Msa1420290-mRNA-1:cds;Parent=Msa1420290-mRNA-1
tig0024770 CDS 71310 71376 71310 ID=Msa1420290-mRNA-1:cds;Parent=Msa1420290-mRNA-1
tig0024770 CDS 71251 71259 71251 ID=Msa1420290-mRNA-1:cds;Parent=Msa1420290-mRNA-1
tig0024770 CDS 71159 71236 71159 ID=Msa1420290-mRNA-1:cds;Parent=Msa1420290-mRNA-1
tig0024770 three_prime_UTR 70695 71158 70695 ID=Msa1420290-mRNA-1:three_prime_utr;Parent=Msa1420290-mRNA-1
tig0024770 three_prime_UTR 69474 70250 69474 ID=Msa1420290-mRNA-1:three_prime_utr;Parent=Msa1420290-mRNA-1
Gene Sequence

>Msa1420290

ATGGAGATCTACATGCTGATGGTGGTTTTGTTCAGAAATTTCATAGATCTGAATCTTCGTGCATCAGATCTACGATCCAGAGGTGTGAACTTGTTCGTCTTGGCTCTGGAGGTATGGTGGTGGATCCTTGAGGAGATCGTAGATCCGGTGCTGAAATATGGCGATTCAACTGTTGATGATGATTATTGA

Protein sequence

>Msa1420290

MEIYMLMVVLFRNFIDLNLRASDLRSRGVNLFVLALEVWWWILEEIVDPVLKYGDSTVDDDY*