Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162520 | A0A072UY95 | 77.193 | 228 | 39 | 3 | 1 | 227 | 4 | 219 | 1.22e-115 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023610 | Msa0162520 | 0.808951 | 2.406231e-50 | -8.615850e-47 |
| Msa0071340 | Msa0162520 | 0.800296 | 1.540721e-48 | -8.615850e-47 |
| Msa0162520 | Msa0162580 | 0.829549 | 4.838173e-55 | -8.615850e-47 |
| Msa0162520 | Msa0675510 | 0.810745 | 9.895812e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATAGATCGTCAATATT+AGG | 0.196396 | 1_4:-39531269 | None:intergenic |
| TGCAAACTTAGGAGCCAATT+TGG | 0.218033 | 1_4:+39529764 | Msa0162520:CDS |
| AAATCCAAGTGAAGAAATTA+AGG | 0.250461 | 1_4:+39530799 | Msa0162520:CDS |
| GTCACTATTAAGACCCAAAT+TGG | 0.259503 | 1_4:-39529778 | None:intergenic |
| TGAGTCCGAGTCTCGATTAA+AGG | 0.273789 | 1_4:-39530303 | None:intergenic |
| TCCTCTTAGGACCCTTGTTT+TGG | 0.280514 | 1_4:-39529800 | None:intergenic |
| GAACTAGCACAGCTGATTAA+TGG | 0.293544 | 1_4:+39530849 | Msa0162520:CDS |
| TATTTCAGTCTGATCCTCTT+AGG | 0.304174 | 1_4:-39529813 | None:intergenic |
| CTCCAACATGTGGTTCAGTT+TGG | 0.312413 | 1_4:+39529718 | Msa0162520:CDS |
| CCAACATCAAACGGTGCTTT+TGG | 0.325999 | 1_4:-39530558 | None:intergenic |
| GTTTGCAGTAGAGTGGTTAA+AGG | 0.332534 | 1_4:-39529748 | None:intergenic |
| TCCAACATGTGGTTCAGTTT+GGG | 0.349563 | 1_4:+39529719 | Msa0162520:CDS |
| TTGTTCTTACCTTGATCATA+TGG | 0.360817 | 1_4:-39530930 | None:intergenic |
| AGAACACAACAACATGGAAT+TGG | 0.366539 | 1_4:+39531223 | Msa0162520:CDS |
| ACATAGGTGGCGTCCACATT+TGG | 0.369942 | 1_4:-39531184 | None:intergenic |
| ATAATTTGAGTCTAAATCAT+TGG | 0.376358 | 1_4:-39530898 | None:intergenic |
| GAAATAGATCGTCAATATTA+GGG | 0.384297 | 1_4:-39531268 | None:intergenic |
| GATACAAAGGTGGTTCTGTT+TGG | 0.388046 | 1_4:-39529695 | None:intergenic |
| AACTAGCACAGCTGATTAAT+GGG | 0.393662 | 1_4:+39530850 | Msa0162520:CDS |
| GCAAACTTAGGAGCCAATTT+GGG | 0.421774 | 1_4:+39529765 | Msa0162520:CDS |
| GAACACAACAACATGGAATT+GGG | 0.459020 | 1_4:+39531224 | Msa0162520:CDS |
| GTTCCCTTAATTTCTTCACT+TGG | 0.466132 | 1_4:-39530803 | None:intergenic |
| GGAATTGGGCATGGAATGGA+TGG | 0.466811 | 1_4:+39531238 | Msa0162520:CDS |
| GTTTCAAAACCATATGATCA+AGG | 0.472120 | 1_4:+39530921 | Msa0162520:CDS |
| CCAAAAGCACCGTTTGATGT+TGG | 0.496047 | 1_4:+39530558 | Msa0162520:CDS |
| AATCCAAGTGAAGAAATTAA+GGG | 0.496720 | 1_4:+39530800 | Msa0162520:CDS |
| GTTGGAGCGTGTGACGTTGA+TGG | 0.506274 | 1_4:+39530576 | Msa0162520:CDS |
| AACCACTCTACTGCAAACTT+AGG | 0.532758 | 1_4:+39529753 | Msa0162520:CDS |
| CTCCTAAGTTTGCAGTAGAG+TGG | 0.536634 | 1_4:-39529755 | None:intergenic |
| GTTTCATGCTCATCCGACAT+AGG | 0.537114 | 1_4:-39531200 | None:intergenic |
| AATGTGGACGCCACCTATGT+CGG | 0.552697 | 1_4:+39531187 | Msa0162520:CDS |
| AAAGGTGGTTCTGTTTGGAA+AGG | 0.562830 | 1_4:-39529690 | None:intergenic |
| TCACACGCTCCAACATCAAA+CGG | 0.566826 | 1_4:-39530567 | None:intergenic |
| ACATGGAATTGGGCATGGAA+TGG | 0.568585 | 1_4:+39531234 | Msa0162520:CDS |
| TCTTAATAGTGACCAAAACA+AGG | 0.569518 | 1_4:+39529788 | Msa0162520:CDS |
| GAGTCTAAATCATTGGACAT+TGG | 0.575430 | 1_4:-39530891 | None:intergenic |
| GATCAAGACGGAAGGAAGAT+CGG | 0.579150 | 1_4:+39530333 | Msa0162520:CDS |
| GACTATTACAAAGCCAAATG+TGG | 0.588677 | 1_4:+39531171 | Msa0162520:CDS |
| CAACAACATGGAATTGGGCA+TGG | 0.590352 | 1_4:+39531229 | Msa0162520:CDS |
| ACCAAAACAAGGGTCCTAAG+AGG | 0.590710 | 1_4:+39529799 | Msa0162520:CDS |
| GTTCTGTTTGGAAAGGAACA+TGG | 0.591842 | 1_4:-39529683 | None:intergenic |
| TCCCAAACTGAACCACATGT+TGG | 0.599459 | 1_4:-39529720 | None:intergenic |
| CAAACTGAACCACATGTTGG+AGG | 0.601431 | 1_4:-39529717 | None:intergenic |
| CACTTAGAGAACATAATGGA+GGG | 0.621926 | 1_4:+39529651 | None:intergenic |
| CCACATGTTGGAGGATACAA+AGG | 0.621996 | 1_4:-39529708 | None:intergenic |
| TCATGCTCATCCGACATAGG+TGG | 0.624811 | 1_4:-39531197 | None:intergenic |
| AGCTCATAGATCAAGACGGA+AGG | 0.626708 | 1_4:+39530325 | Msa0162520:CDS |
| AAAGAAGCACATCTTAAAGA+CGG | 0.628544 | 1_4:+39530619 | Msa0162520:CDS |
| CTACGTCGATCAACAAGCTG+AGG | 0.639200 | 1_4:+39530827 | Msa0162520:CDS |
| CCTTTGTATCCTCCAACATG+TGG | 0.647083 | 1_4:+39529708 | Msa0162520:CDS |
| TGAAACCTTTAATCGAGACT+CGG | 0.649080 | 1_4:+39530298 | Msa0162520:CDS |
| TGAAACAGAACACAACAACA+TGG | 0.650313 | 1_4:+39531217 | Msa0162520:CDS |
| ACTCAGCTCATAGATCAAGA+CGG | 0.691685 | 1_4:+39530321 | Msa0162520:CDS |
| CTTAATAGTGACCAAAACAA+GGG | 0.698882 | 1_4:+39529789 | Msa0162520:CDS |
| CATGTTGGAGGATACAAAGG+TGG | 0.702436 | 1_4:-39529705 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTCAAAAAAAAAAAAAAAAT+TGG | + | chr1_4:39529928-39529947 | Msa0162520:intron | 10.0% |
| !! | CAAAAAAAAAAAAAAAATTG+GGG | + | chr1_4:39529930-39529949 | Msa0162520:intron | 10.0% |
| !!! | TAATTATTATTTATTGGTTT+TGG | + | chr1_4:39531040-39531059 | Msa0162520:intron | 10.0% |
| !! | CTCAAAAAAAAAAAAAAAAT+TGG | + | chr1_4:39529928-39529947 | Msa0162520:intron | 10.0% |
| !! | CAAAAAAAAAAAAAAAATTG+GGG | + | chr1_4:39529930-39529949 | Msa0162520:intron | 10.0% |
| !!! | TAATTATTATTTATTGGTTT+TGG | + | chr1_4:39531040-39531059 | Msa0162520:intron | 10.0% |
| !!! | ATTGACATTTTAAATAATTG+TGG | + | chr1_4:39529896-39529915 | Msa0162520:intron | 15.0% |
| !! | ACACACAAATATATATATTA+AGG | + | chr1_4:39529959-39529978 | Msa0162520:intron | 15.0% |
| !!! | TTTAACTTTTTTACTCAAAT+AGG | - | chr1_4:39530366-39530385 | None:intergenic | 15.0% |
| !! | TAAAAAAGTTAAAGAAATTG+AGG | + | chr1_4:39530373-39530392 | Msa0162520:CDS | 15.0% |
| !! | GTATGCTAATTATTATTTAT+TGG | + | chr1_4:39531034-39531053 | Msa0162520:intron | 15.0% |
| !!! | TTACTTTTTTAAAATGACAT+AGG | + | chr1_4:39531149-39531168 | Msa0162520:intron | 15.0% |
| !!! | ATTGACATTTTAAATAATTG+TGG | + | chr1_4:39529896-39529915 | Msa0162520:intron | 15.0% |
| !! | ACACACAAATATATATATTA+AGG | + | chr1_4:39529959-39529978 | Msa0162520:intron | 15.0% |
| !!! | TTTAACTTTTTTACTCAAAT+AGG | - | chr1_4:39530366-39530385 | None:intergenic | 15.0% |
| !! | TAAAAAAGTTAAAGAAATTG+AGG | + | chr1_4:39530373-39530392 | Msa0162520:CDS | 15.0% |
| !! | GTATGCTAATTATTATTTAT+TGG | + | chr1_4:39531034-39531053 | Msa0162520:intron | 15.0% |
| !!! | TTACTTTTTTAAAATGACAT+AGG | + | chr1_4:39531149-39531168 | Msa0162520:intron | 15.0% |
| !! | TTAAAATGTCAATTATCACA+AGG | - | chr1_4:39529889-39529908 | None:intergenic | 20.0% |
| !! | TCATCATAATCTAAATTTCA+AGG | - | chr1_4:39530198-39530217 | None:intergenic | 20.0% |
| !! | ATAATTTGAGTCTAAATCAT+TGG | - | chr1_4:39530901-39530920 | None:intergenic | 20.0% |
| !!! | CAACATATTAGTTTTTGAAA+AGG | - | chr1_4:39531000-39531019 | None:intergenic | 20.0% |
| !! | AAAAGAATTAATTAGTCACT+AGG | - | chr1_4:39531074-39531093 | None:intergenic | 20.0% |
| !! | TTAAAATGTCAATTATCACA+AGG | - | chr1_4:39529889-39529908 | None:intergenic | 20.0% |
| !! | TCATCATAATCTAAATTTCA+AGG | - | chr1_4:39530198-39530217 | None:intergenic | 20.0% |
| !! | ATAATTTGAGTCTAAATCAT+TGG | - | chr1_4:39530901-39530920 | None:intergenic | 20.0% |
| !!! | CAACATATTAGTTTTTGAAA+AGG | - | chr1_4:39531000-39531019 | None:intergenic | 20.0% |
| !! | AAAAGAATTAATTAGTCACT+AGG | - | chr1_4:39531074-39531093 | None:intergenic | 20.0% |
| ! | AGACTGAAATACATGTAATT+TGG | + | chr1_4:39529825-39529844 | Msa0162520:intron | 25.0% |
| ! | CATAGCTCAATATATTGATA+AGG | + | chr1_4:39530703-39530722 | Msa0162520:intron | 25.0% |
| ! | ACTTTCAGCTGATAATTAAT+GGG | - | chr1_4:39530769-39530788 | None:intergenic | 25.0% |
| ! | AAATCCAAGTGAAGAAATTA+AGG | + | chr1_4:39530799-39530818 | Msa0162520:CDS | 25.0% |
| ! | AATCCAAGTGAAGAAATTAA+GGG | + | chr1_4:39530800-39530819 | Msa0162520:CDS | 25.0% |
| ! | GAAATAGATCGTCAATATTA+GGG | - | chr1_4:39531271-39531290 | None:intergenic | 25.0% |
| ! | AGAAATAGATCGTCAATATT+AGG | - | chr1_4:39531272-39531291 | None:intergenic | 25.0% |
| ! | AGACTGAAATACATGTAATT+TGG | + | chr1_4:39529825-39529844 | Msa0162520:intron | 25.0% |
| ! | CATAGCTCAATATATTGATA+AGG | + | chr1_4:39530703-39530722 | Msa0162520:intron | 25.0% |
| ! | ACTTTCAGCTGATAATTAAT+GGG | - | chr1_4:39530769-39530788 | None:intergenic | 25.0% |
| ! | AAATCCAAGTGAAGAAATTA+AGG | + | chr1_4:39530799-39530818 | Msa0162520:CDS | 25.0% |
| ! | AATCCAAGTGAAGAAATTAA+GGG | + | chr1_4:39530800-39530819 | Msa0162520:CDS | 25.0% |
| ! | GAAATAGATCGTCAATATTA+GGG | - | chr1_4:39531271-39531290 | None:intergenic | 25.0% |
| ! | AGAAATAGATCGTCAATATT+AGG | - | chr1_4:39531272-39531291 | None:intergenic | 25.0% |
| TCTTAATAGTGACCAAAACA+AGG | + | chr1_4:39529788-39529807 | Msa0162520:CDS | 30.0% | |
| CTTAATAGTGACCAAAACAA+GGG | + | chr1_4:39529789-39529808 | Msa0162520:CDS | 30.0% | |
| ! | AAAGAAGCACATCTTAAAGA+CGG | + | chr1_4:39530619-39530638 | Msa0162520:CDS | 30.0% |
| CACTTTCAGCTGATAATTAA+TGG | - | chr1_4:39530770-39530789 | None:intergenic | 30.0% | |
| GTTTCAAAACCATATGATCA+AGG | + | chr1_4:39530921-39530940 | Msa0162520:CDS | 30.0% | |
| TTGTTCTTACCTTGATCATA+TGG | - | chr1_4:39530933-39530952 | None:intergenic | 30.0% | |
| TCTTAATAGTGACCAAAACA+AGG | + | chr1_4:39529788-39529807 | Msa0162520:CDS | 30.0% | |
| CTTAATAGTGACCAAAACAA+GGG | + | chr1_4:39529789-39529808 | Msa0162520:CDS | 30.0% | |
| ! | AAAGAAGCACATCTTAAAGA+CGG | + | chr1_4:39530619-39530638 | Msa0162520:CDS | 30.0% |
| CACTTTCAGCTGATAATTAA+TGG | - | chr1_4:39530770-39530789 | None:intergenic | 30.0% | |
| GTTTCAAAACCATATGATCA+AGG | + | chr1_4:39530921-39530940 | Msa0162520:CDS | 30.0% | |
| TTGTTCTTACCTTGATCATA+TGG | - | chr1_4:39530933-39530952 | None:intergenic | 30.0% | |
| GTCACTATTAAGACCCAAAT+TGG | - | chr1_4:39529781-39529800 | None:intergenic | 35.0% | |
| TATTTCAGTCTGATCCTCTT+AGG | - | chr1_4:39529816-39529835 | None:intergenic | 35.0% | |
| TGAAACCTTTAATCGAGACT+CGG | + | chr1_4:39530298-39530317 | Msa0162520:CDS | 35.0% | |
| CGCTCATCATAAATATATGC+AGG | + | chr1_4:39530492-39530511 | Msa0162520:intron | 35.0% | |
| GTTCCCTTAATTTCTTCACT+TGG | - | chr1_4:39530806-39530825 | None:intergenic | 35.0% | |
| AACTAGCACAGCTGATTAAT+GGG | + | chr1_4:39530850-39530869 | Msa0162520:CDS | 35.0% | |
| GAGTCTAAATCATTGGACAT+TGG | - | chr1_4:39530894-39530913 | None:intergenic | 35.0% | |
| GACTATTACAAAGCCAAATG+TGG | + | chr1_4:39531171-39531190 | Msa0162520:CDS | 35.0% | |
| TGAAACAGAACACAACAACA+TGG | + | chr1_4:39531217-39531236 | Msa0162520:CDS | 35.0% | |
| AGAACACAACAACATGGAAT+TGG | + | chr1_4:39531223-39531242 | Msa0162520:CDS | 35.0% | |
| GAACACAACAACATGGAATT+GGG | + | chr1_4:39531224-39531243 | Msa0162520:CDS | 35.0% | |
| GTCACTATTAAGACCCAAAT+TGG | - | chr1_4:39529781-39529800 | None:intergenic | 35.0% | |
| TATTTCAGTCTGATCCTCTT+AGG | - | chr1_4:39529816-39529835 | None:intergenic | 35.0% | |
| TGAAACCTTTAATCGAGACT+CGG | + | chr1_4:39530298-39530317 | Msa0162520:CDS | 35.0% | |
| CGCTCATCATAAATATATGC+AGG | + | chr1_4:39530492-39530511 | Msa0162520:intron | 35.0% | |
| GTTCCCTTAATTTCTTCACT+TGG | - | chr1_4:39530806-39530825 | None:intergenic | 35.0% | |
| AACTAGCACAGCTGATTAAT+GGG | + | chr1_4:39530850-39530869 | Msa0162520:CDS | 35.0% | |
| GAGTCTAAATCATTGGACAT+TGG | - | chr1_4:39530894-39530913 | None:intergenic | 35.0% | |
| GACTATTACAAAGCCAAATG+TGG | + | chr1_4:39531171-39531190 | Msa0162520:CDS | 35.0% | |
| TGAAACAGAACACAACAACA+TGG | + | chr1_4:39531217-39531236 | Msa0162520:CDS | 35.0% | |
| AGAACACAACAACATGGAAT+TGG | + | chr1_4:39531223-39531242 | Msa0162520:CDS | 35.0% | |
| GAACACAACAACATGGAATT+GGG | + | chr1_4:39531224-39531243 | Msa0162520:CDS | 35.0% | |
| GTTCTGTTTGGAAAGGAACA+TGG | - | chr1_4:39529686-39529705 | None:intergenic | 40.0% | |
| ! | AAAGGTGGTTCTGTTTGGAA+AGG | - | chr1_4:39529693-39529712 | None:intergenic | 40.0% |
| ! | GATACAAAGGTGGTTCTGTT+TGG | - | chr1_4:39529698-39529717 | None:intergenic | 40.0% |
| TCCAACATGTGGTTCAGTTT+GGG | + | chr1_4:39529719-39529738 | Msa0162520:CDS | 40.0% | |
| GTTTGCAGTAGAGTGGTTAA+AGG | - | chr1_4:39529751-39529770 | None:intergenic | 40.0% | |
| AACCACTCTACTGCAAACTT+AGG | + | chr1_4:39529753-39529772 | Msa0162520:CDS | 40.0% | |
| TGCAAACTTAGGAGCCAATT+TGG | + | chr1_4:39529764-39529783 | Msa0162520:CDS | 40.0% | |
| GCAAACTTAGGAGCCAATTT+GGG | + | chr1_4:39529765-39529784 | Msa0162520:CDS | 40.0% | |
| CATGCATTCACCATAGTCAA+TGG | + | chr1_4:39530103-39530122 | Msa0162520:intron | 40.0% | |
| ACACATGCATTATGAGACTC+TGG | - | chr1_4:39530238-39530257 | None:intergenic | 40.0% | |
| ACTCAGCTCATAGATCAAGA+CGG | + | chr1_4:39530321-39530340 | Msa0162520:CDS | 40.0% | |
| GAACTAGCACAGCTGATTAA+TGG | + | chr1_4:39530849-39530868 | Msa0162520:CDS | 40.0% | |
| GTTCTGTTTGGAAAGGAACA+TGG | - | chr1_4:39529686-39529705 | None:intergenic | 40.0% | |
| ! | AAAGGTGGTTCTGTTTGGAA+AGG | - | chr1_4:39529693-39529712 | None:intergenic | 40.0% |
| ! | GATACAAAGGTGGTTCTGTT+TGG | - | chr1_4:39529698-39529717 | None:intergenic | 40.0% |
| TCCAACATGTGGTTCAGTTT+GGG | + | chr1_4:39529719-39529738 | Msa0162520:CDS | 40.0% | |
| GTTTGCAGTAGAGTGGTTAA+AGG | - | chr1_4:39529751-39529770 | None:intergenic | 40.0% | |
| AACCACTCTACTGCAAACTT+AGG | + | chr1_4:39529753-39529772 | Msa0162520:CDS | 40.0% | |
| TGCAAACTTAGGAGCCAATT+TGG | + | chr1_4:39529764-39529783 | Msa0162520:CDS | 40.0% | |
| GCAAACTTAGGAGCCAATTT+GGG | + | chr1_4:39529765-39529784 | Msa0162520:CDS | 40.0% | |
| CATGCATTCACCATAGTCAA+TGG | + | chr1_4:39530103-39530122 | Msa0162520:intron | 40.0% | |
| ACACATGCATTATGAGACTC+TGG | - | chr1_4:39530238-39530257 | None:intergenic | 40.0% | |
| ACTCAGCTCATAGATCAAGA+CGG | + | chr1_4:39530321-39530340 | Msa0162520:CDS | 40.0% | |
| GAACTAGCACAGCTGATTAA+TGG | + | chr1_4:39530849-39530868 | Msa0162520:CDS | 40.0% | |
| CATGTTGGAGGATACAAAGG+TGG | - | chr1_4:39529708-39529727 | None:intergenic | 45.0% | |
| CCACATGTTGGAGGATACAA+AGG | - | chr1_4:39529711-39529730 | None:intergenic | 45.0% | |
| CCTTTGTATCCTCCAACATG+TGG | + | chr1_4:39529708-39529727 | Msa0162520:CDS | 45.0% | |
| CAAACTGAACCACATGTTGG+AGG | - | chr1_4:39529720-39529739 | None:intergenic | 45.0% | |
| CTCCAACATGTGGTTCAGTT+TGG | + | chr1_4:39529718-39529737 | Msa0162520:CDS | 45.0% | |
| TCCCAAACTGAACCACATGT+TGG | - | chr1_4:39529723-39529742 | None:intergenic | 45.0% | |
| CTCCTAAGTTTGCAGTAGAG+TGG | - | chr1_4:39529758-39529777 | None:intergenic | 45.0% | |
| ACCAAAACAAGGGTCCTAAG+AGG | + | chr1_4:39529799-39529818 | Msa0162520:CDS | 45.0% | |
| !! | TCCTCTTAGGACCCTTGTTT+TGG | - | chr1_4:39529803-39529822 | None:intergenic | 45.0% |
| ! | CGATCTACGACCATTGACTA+TGG | - | chr1_4:39530116-39530135 | None:intergenic | 45.0% |
| GGTCGTAGATCGACATCAAA+CGG | + | chr1_4:39530124-39530143 | Msa0162520:intron | 45.0% | |
| TGAGTCCGAGTCTCGATTAA+AGG | - | chr1_4:39530306-39530325 | None:intergenic | 45.0% | |
| AGCTCATAGATCAAGACGGA+AGG | + | chr1_4:39530325-39530344 | Msa0162520:CDS | 45.0% | |
| GATCAAGACGGAAGGAAGAT+CGG | + | chr1_4:39530333-39530352 | Msa0162520:CDS | 45.0% | |
| ! | CCAACATCAAACGGTGCTTT+TGG | - | chr1_4:39530561-39530580 | None:intergenic | 45.0% |
| !! | CCAAAAGCACCGTTTGATGT+TGG | + | chr1_4:39530558-39530577 | Msa0162520:CDS | 45.0% |
| TCACACGCTCCAACATCAAA+CGG | - | chr1_4:39530570-39530589 | None:intergenic | 45.0% | |
| GTTTCATGCTCATCCGACAT+AGG | - | chr1_4:39531203-39531222 | None:intergenic | 45.0% | |
| CAACAACATGGAATTGGGCA+TGG | + | chr1_4:39531229-39531248 | Msa0162520:CDS | 45.0% | |
| ACATGGAATTGGGCATGGAA+TGG | + | chr1_4:39531234-39531253 | Msa0162520:CDS | 45.0% | |
| CATGTTGGAGGATACAAAGG+TGG | - | chr1_4:39529708-39529727 | None:intergenic | 45.0% | |
| CCACATGTTGGAGGATACAA+AGG | - | chr1_4:39529711-39529730 | None:intergenic | 45.0% | |
| CCTTTGTATCCTCCAACATG+TGG | + | chr1_4:39529708-39529727 | Msa0162520:CDS | 45.0% | |
| CAAACTGAACCACATGTTGG+AGG | - | chr1_4:39529720-39529739 | None:intergenic | 45.0% | |
| CTCCAACATGTGGTTCAGTT+TGG | + | chr1_4:39529718-39529737 | Msa0162520:CDS | 45.0% | |
| TCCCAAACTGAACCACATGT+TGG | - | chr1_4:39529723-39529742 | None:intergenic | 45.0% | |
| CTCCTAAGTTTGCAGTAGAG+TGG | - | chr1_4:39529758-39529777 | None:intergenic | 45.0% | |
| ACCAAAACAAGGGTCCTAAG+AGG | + | chr1_4:39529799-39529818 | Msa0162520:CDS | 45.0% | |
| !! | TCCTCTTAGGACCCTTGTTT+TGG | - | chr1_4:39529803-39529822 | None:intergenic | 45.0% |
| ! | CGATCTACGACCATTGACTA+TGG | - | chr1_4:39530116-39530135 | None:intergenic | 45.0% |
| GGTCGTAGATCGACATCAAA+CGG | + | chr1_4:39530124-39530143 | Msa0162520:intron | 45.0% | |
| TGAGTCCGAGTCTCGATTAA+AGG | - | chr1_4:39530306-39530325 | None:intergenic | 45.0% | |
| AGCTCATAGATCAAGACGGA+AGG | + | chr1_4:39530325-39530344 | Msa0162520:CDS | 45.0% | |
| GATCAAGACGGAAGGAAGAT+CGG | + | chr1_4:39530333-39530352 | Msa0162520:CDS | 45.0% | |
| ! | CCAACATCAAACGGTGCTTT+TGG | - | chr1_4:39530561-39530580 | None:intergenic | 45.0% |
| !! | CCAAAAGCACCGTTTGATGT+TGG | + | chr1_4:39530558-39530577 | Msa0162520:CDS | 45.0% |
| TCACACGCTCCAACATCAAA+CGG | - | chr1_4:39530570-39530589 | None:intergenic | 45.0% | |
| GTTTCATGCTCATCCGACAT+AGG | - | chr1_4:39531203-39531222 | None:intergenic | 45.0% | |
| CAACAACATGGAATTGGGCA+TGG | + | chr1_4:39531229-39531248 | Msa0162520:CDS | 45.0% | |
| ACATGGAATTGGGCATGGAA+TGG | + | chr1_4:39531234-39531253 | Msa0162520:CDS | 45.0% | |
| !! | TCAAAAAAAAAAAAAAAATT+GGG | + | chr1_4:39529929-39529948 | Msa0162520:intron | 5.0% |
| !! | TCAAAAAAAAAAAAAAAATT+GGG | + | chr1_4:39529929-39529948 | Msa0162520:intron | 5.0% |
| CTACGTCGATCAACAAGCTG+AGG | + | chr1_4:39530827-39530846 | Msa0162520:CDS | 50.0% | |
| ACATAGGTGGCGTCCACATT+TGG | - | chr1_4:39531187-39531206 | None:intergenic | 50.0% | |
| AATGTGGACGCCACCTATGT+CGG | + | chr1_4:39531187-39531206 | Msa0162520:CDS | 50.0% | |
| TCATGCTCATCCGACATAGG+TGG | - | chr1_4:39531200-39531219 | None:intergenic | 50.0% | |
| GGAATTGGGCATGGAATGGA+TGG | + | chr1_4:39531238-39531257 | Msa0162520:CDS | 50.0% | |
| CTACGTCGATCAACAAGCTG+AGG | + | chr1_4:39530827-39530846 | Msa0162520:CDS | 50.0% | |
| ACATAGGTGGCGTCCACATT+TGG | - | chr1_4:39531187-39531206 | None:intergenic | 50.0% | |
| AATGTGGACGCCACCTATGT+CGG | + | chr1_4:39531187-39531206 | Msa0162520:CDS | 50.0% | |
| TCATGCTCATCCGACATAGG+TGG | - | chr1_4:39531200-39531219 | None:intergenic | 50.0% | |
| GGAATTGGGCATGGAATGGA+TGG | + | chr1_4:39531238-39531257 | Msa0162520:CDS | 50.0% | |
| GTTGGAGCGTGTGACGTTGA+TGG | + | chr1_4:39530576-39530595 | Msa0162520:CDS | 55.0% | |
| GTTGGAGCGTGTGACGTTGA+TGG | + | chr1_4:39530576-39530595 | Msa0162520:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 39529666 | 39531295 | 39529666 | ID=Msa0162520;Name=Msa0162520 |
| chr1_4 | mRNA | 39529666 | 39531295 | 39529666 | ID=Msa0162520-mRNA-1;Parent=Msa0162520;Name=Msa0162520-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|5|0|227 |
| chr1_4 | exon | 39529666 | 39529838 | 39529666 | ID=Msa0162520-mRNA-1:exon:11461;Parent=Msa0162520-mRNA-1 |
| chr1_4 | exon | 39530298 | 39530394 | 39530298 | ID=Msa0162520-mRNA-1:exon:11462;Parent=Msa0162520-mRNA-1 |
| chr1_4 | exon | 39530514 | 39530640 | 39530514 | ID=Msa0162520-mRNA-1:exon:11463;Parent=Msa0162520-mRNA-1 |
| chr1_4 | exon | 39530781 | 39530942 | 39530781 | ID=Msa0162520-mRNA-1:exon:11464;Parent=Msa0162520-mRNA-1 |
| chr1_4 | exon | 39531171 | 39531295 | 39531171 | ID=Msa0162520-mRNA-1:exon:11465;Parent=Msa0162520-mRNA-1 |
| chr1_4 | CDS | 39529666 | 39529838 | 39529666 | ID=Msa0162520-mRNA-1:cds;Parent=Msa0162520-mRNA-1 |
| chr1_4 | CDS | 39530298 | 39530394 | 39530298 | ID=Msa0162520-mRNA-1:cds;Parent=Msa0162520-mRNA-1 |
| chr1_4 | CDS | 39530514 | 39530640 | 39530514 | ID=Msa0162520-mRNA-1:cds;Parent=Msa0162520-mRNA-1 |
| chr1_4 | CDS | 39530781 | 39530942 | 39530781 | ID=Msa0162520-mRNA-1:cds;Parent=Msa0162520-mRNA-1 |
| chr1_4 | CDS | 39531171 | 39531295 | 39531171 | ID=Msa0162520-mRNA-1:cds;Parent=Msa0162520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
