Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675510 | KEH34366.1 | 77.632 | 228 | 38 | 3 | 1 | 227 | 4 | 219 | 3.20e-117 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675510 | A0A072UY95 | 77.632 | 228 | 38 | 3 | 1 | 227 | 4 | 219 | 1.53e-117 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023610 | Msa0675510 | 0.944241 | 2.797766e-103 | -8.615850e-47 |
| Msa0068630 | Msa0675510 | 0.868827 | 4.888753e-66 | -8.615850e-47 |
| Msa0071340 | Msa0675510 | 0.913800 | 4.039939e-84 | -8.615850e-47 |
| Msa0639460 | Msa0675510 | 0.813508 | 2.470453e-51 | -8.615850e-47 |
| Msa0675510 | Msa0682360 | 0.800248 | 1.575581e-48 | -8.615850e-47 |
| Msa0675510 | Msa0722510 | 0.818300 | 2.106010e-52 | -8.615850e-47 |
| Msa0675510 | Msa0745110 | 0.805725 | 1.162244e-49 | -8.615850e-47 |
| Msa0675510 | Msa0815320 | 0.823785 | 1.148609e-53 | -8.615850e-47 |
| Msa0675510 | Msa0858360 | 0.809382 | 1.945127e-50 | -8.615850e-47 |
| Msa0675510 | Msa0884920 | 0.822913 | 1.836310e-53 | -8.615850e-47 |
| Msa0675510 | Msa0902020 | 0.801327 | 9.486767e-49 | -8.615850e-47 |
| Msa0675510 | Msa0912500 | 0.833460 | 5.266294e-56 | -8.615850e-47 |
| Msa0675510 | Msa0951330 | 0.816456 | 5.477571e-52 | -8.615850e-47 |
| Msa0675510 | Msa0962360 | 0.846795 | 1.734687e-59 | -8.615850e-47 |
| Msa0675510 | Msa0964180 | 0.812811 | 3.512793e-51 | -8.615850e-47 |
| Msa0675510 | Msa1021750 | 0.843427 | 1.411111e-58 | -8.615850e-47 |
| Msa0675510 | Msa1024240 | 0.814311 | 1.643082e-51 | -8.615850e-47 |
| Msa0675510 | Msa1048540 | 0.811027 | 8.596776e-51 | -8.615850e-47 |
| Msa0675510 | Msa1060520 | 0.805621 | 1.221691e-49 | -8.615850e-47 |
| Msa0675510 | Msa1092990 | 0.819587 | 1.073854e-52 | -8.615850e-47 |
| Msa0675510 | Msa1131820 | 0.806167 | 9.383628e-50 | -8.615850e-47 |
| Msa0675510 | Msa1178650 | 0.800452 | 1.431608e-48 | -8.615850e-47 |
| Msa0675510 | Msa1182730 | 0.818999 | 1.462296e-52 | -8.615850e-47 |
| Msa0675510 | Msa1191210 | 0.814915 | 1.207794e-51 | -8.615850e-47 |
| Msa0675510 | Msa1232060 | 0.810832 | 9.473970e-51 | -8.615850e-47 |
| Msa0675510 | Msa1347360 | 0.820031 | 8.503063e-53 | -8.615850e-47 |
| Msa0675510 | Msa1423990 | 0.834079 | 3.686891e-56 | -8.615850e-47 |
| Msa0675510 | Msa1463140 | 0.919071 | 7.117411e-87 | -8.615850e-47 |
| Msa0153200 | Msa0675510 | 0.919722 | 3.153254e-87 | -8.615850e-47 |
| Msa0162520 | Msa0675510 | 0.810745 | 9.895812e-51 | -8.615850e-47 |
| Msa0162580 | Msa0675510 | 0.924667 | 5.188710e-90 | -8.615850e-47 |
| Msa0211680 | Msa0675510 | 0.845405 | 4.146397e-59 | -8.615850e-47 |
| Msa0458420 | Msa0675510 | 0.824096 | 9.713456e-54 | -8.615850e-47 |
| Msa0280450 | Msa0675510 | 0.848115 | 7.527946e-60 | -8.615850e-47 |
| Msa0291600 | Msa0675510 | 0.837130 | 6.232148e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATAGATCGTCAATATT+AGG | 0.196396 | 4_4:-24598188 | None:intergenic |
| TGCAAACTTAGGAGCCAATT+TGG | 0.218033 | 4_4:+24596687 | Msa0675510:CDS |
| AAATCCAAGTGAAGAAATTA+AGG | 0.250461 | 4_4:+24597718 | Msa0675510:CDS |
| GAACTAGCATTGCTGATTAA+TGG | 0.258098 | 4_4:+24597768 | Msa0675510:CDS |
| GTCACTATTAAGACCCAAAT+TGG | 0.259503 | 4_4:-24596701 | None:intergenic |
| TGAGTCCGAGTCTCGATTAA+AGG | 0.273789 | 4_4:-24597222 | None:intergenic |
| TCCTCTTAGGACCCTTGTTT+TGG | 0.280514 | 4_4:-24596723 | None:intergenic |
| CTCCAACATGTGGTTCAGTT+TGG | 0.312413 | 4_4:+24596641 | Msa0675510:CDS |
| CCAACATCAAACGGTGCTTT+TGG | 0.325999 | 4_4:-24597477 | None:intergenic |
| TATTTCCGTCTGATCCTCTT+AGG | 0.332160 | 4_4:-24596736 | None:intergenic |
| TCCAACATGTGGTTCAGTTT+GGG | 0.349563 | 4_4:+24596642 | Msa0675510:CDS |
| GTTTGCAGTAGAATGGTTAA+AGG | 0.350732 | 4_4:-24596671 | None:intergenic |
| TTGTTCTTACCTTGATCATA+TGG | 0.360817 | 4_4:-24597849 | None:intergenic |
| AGAACACAACAACATGGAAT+TGG | 0.366539 | 4_4:+24598142 | Msa0675510:CDS |
| ACATAGGTGGCGTCCACATT+TGG | 0.369942 | 4_4:-24598103 | None:intergenic |
| ATAATTTGAGTCTAAATCAT+TGG | 0.376358 | 4_4:-24597817 | None:intergenic |
| AACTAGCATTGCTGATTAAT+GGG | 0.377332 | 4_4:+24597769 | Msa0675510:CDS |
| GAAATAGATCGTCAATATTA+GGG | 0.384297 | 4_4:-24598187 | None:intergenic |
| GATACAAAGGTGGTTCTGTT+TGG | 0.388046 | 4_4:-24596618 | None:intergenic |
| GCAAACTTAGGAGCCAATTT+GGG | 0.421774 | 4_4:+24596688 | Msa0675510:CDS |
| CTCCTAAGTTTGCAGTAGAA+TGG | 0.429162 | 4_4:-24596678 | None:intergenic |
| GAACACAACAACATGGAATT+GGG | 0.459020 | 4_4:+24598143 | Msa0675510:CDS |
| GTTCCCTTAATTTCTTCACT+TGG | 0.466132 | 4_4:-24597722 | None:intergenic |
| GGAATTGGGCATGGAATGGA+TGG | 0.466811 | 4_4:+24598157 | Msa0675510:CDS |
| GTTTCAAAACCATATGATCA+AGG | 0.472120 | 4_4:+24597840 | Msa0675510:CDS |
| GTTTCGTGCTCATCCGACAT+AGG | 0.491148 | 4_4:-24598119 | None:intergenic |
| AACCATTCTACTGCAAACTT+AGG | 0.495074 | 4_4:+24596676 | Msa0675510:CDS |
| CCAAAAGCACCGTTTGATGT+TGG | 0.496047 | 4_4:+24597477 | Msa0675510:CDS |
| AATCCAAGTGAAGAAATTAA+GGG | 0.496720 | 4_4:+24597719 | Msa0675510:CDS |
| GTTGGAGCGTGTGATGTTGA+TGG | 0.514672 | 4_4:+24597495 | Msa0675510:CDS |
| TCACACGCTCCAACATCAAA+CGG | 0.549845 | 4_4:-24597486 | None:intergenic |
| AATGTGGACGCCACCTATGT+CGG | 0.552697 | 4_4:+24598106 | Msa0675510:CDS |
| AAAGGTGGTTCTGTTTGGAA+AGG | 0.562830 | 4_4:-24596613 | None:intergenic |
| ACATGGAATTGGGCATGGAA+TGG | 0.568585 | 4_4:+24598153 | Msa0675510:CDS |
| TCTTAATAGTGACCAAAACA+AGG | 0.569518 | 4_4:+24596711 | Msa0675510:CDS |
| GAGTCTAAATCATTGGACAT+TGG | 0.575430 | 4_4:-24597810 | None:intergenic |
| GATCAAGACGGAAGGAAGAT+CGG | 0.579150 | 4_4:+24597252 | Msa0675510:CDS |
| GACTATTACAAAGCCAAATG+TGG | 0.588677 | 4_4:+24598090 | Msa0675510:CDS |
| CAACAACATGGAATTGGGCA+TGG | 0.590352 | 4_4:+24598148 | Msa0675510:CDS |
| ACCAAAACAAGGGTCCTAAG+AGG | 0.590710 | 4_4:+24596722 | Msa0675510:CDS |
| GTTCTGTTTGGAAAGGAACA+TGG | 0.591842 | 4_4:-24596606 | None:intergenic |
| TCCCAAACTGAACCACATGT+TGG | 0.599459 | 4_4:-24596643 | None:intergenic |
| CAAACTGAACCACATGTTGG+AGG | 0.601431 | 4_4:-24596640 | None:intergenic |
| AAAGAAGCACTTCTTAAAGA+CGG | 0.616706 | 4_4:+24597538 | Msa0675510:CDS |
| CACTTAGAGAACATAATGGA+GGG | 0.621926 | 4_4:+24596574 | None:intergenic |
| CCACATGTTGGAGGATACAA+AGG | 0.621996 | 4_4:-24596631 | None:intergenic |
| AGCTCATAGATCAAGACGGA+AGG | 0.626708 | 4_4:+24597244 | Msa0675510:CDS |
| CGAAACAGAACACAACAACA+TGG | 0.635296 | 4_4:+24598136 | Msa0675510:CDS |
| CTACGTCGATCAACAAGCTG+AGG | 0.639200 | 4_4:+24597746 | Msa0675510:CDS |
| TCGTGCTCATCCGACATAGG+TGG | 0.642330 | 4_4:-24598116 | None:intergenic |
| CCTTTGTATCCTCCAACATG+TGG | 0.647083 | 4_4:+24596631 | Msa0675510:CDS |
| TGAAACCTTTAATCGAGACT+CGG | 0.649080 | 4_4:+24597217 | Msa0675510:CDS |
| AGGGTCCTAAGAGGATCAGA+CGG | 0.663320 | 4_4:+24596731 | Msa0675510:CDS |
| ACTCAGCTCATAGATCAAGA+CGG | 0.691685 | 4_4:+24597240 | Msa0675510:CDS |
| CTTAATAGTGACCAAAACAA+GGG | 0.698882 | 4_4:+24596712 | Msa0675510:CDS |
| CATGTTGGAGGATACAAAGG+TGG | 0.702436 | 4_4:-24596628 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAAAAAAAAAAAATTG+CGG | + | chr4_4:24596857-24596876 | Msa0675510:intron | 10.0% |
| !!! | TAATTATTATTTATTGGTTT+TGG | + | chr4_4:24597959-24597978 | Msa0675510:intron | 10.0% |
| !! | AAAACAAAAAAAAAAAATTG+CGG | + | chr4_4:24596857-24596876 | Msa0675510:intron | 10.0% |
| !!! | TAATTATTATTTATTGGTTT+TGG | + | chr4_4:24597959-24597978 | Msa0675510:intron | 10.0% |
| !!! | TTTGACATTTTAAATAATTG+TGG | + | chr4_4:24596819-24596838 | Msa0675510:intron | 15.0% |
| !!! | TTTAACTTTTTTACTCAAAT+AGG | - | chr4_4:24597285-24597304 | None:intergenic | 15.0% |
| !! | TAAAAAAGTTAAAGAAATTG+AGG | + | chr4_4:24597292-24597311 | Msa0675510:CDS | 15.0% |
| !! | GTATGCTAATTATTATTTAT+TGG | + | chr4_4:24597953-24597972 | Msa0675510:intron | 15.0% |
| !!! | TTACTTTTTTAAAATGACAT+AGG | + | chr4_4:24598068-24598087 | Msa0675510:intron | 15.0% |
| !!! | TTTGACATTTTAAATAATTG+TGG | + | chr4_4:24596819-24596838 | Msa0675510:intron | 15.0% |
| !!! | TTTAACTTTTTTACTCAAAT+AGG | - | chr4_4:24597285-24597304 | None:intergenic | 15.0% |
| !! | TAAAAAAGTTAAAGAAATTG+AGG | + | chr4_4:24597292-24597311 | Msa0675510:CDS | 15.0% |
| !! | GTATGCTAATTATTATTTAT+TGG | + | chr4_4:24597953-24597972 | Msa0675510:intron | 15.0% |
| !!! | TTACTTTTTTAAAATGACAT+AGG | + | chr4_4:24598068-24598087 | Msa0675510:intron | 15.0% |
| !! | TTAAAATGTCAAATATCACA+AGG | - | chr4_4:24596812-24596831 | None:intergenic | 20.0% |
| !! | ATAATTTGAGTCTAAATCAT+TGG | - | chr4_4:24597820-24597839 | None:intergenic | 20.0% |
| !!! | CAACATATTAGTTTTTGAAA+AGG | - | chr4_4:24597919-24597938 | None:intergenic | 20.0% |
| !! | AAAAGAATTAATTAGTCACT+AGG | - | chr4_4:24597993-24598012 | None:intergenic | 20.0% |
| !! | TTAAAATGTCAAATATCACA+AGG | - | chr4_4:24596812-24596831 | None:intergenic | 20.0% |
| !! | ATAATTTGAGTCTAAATCAT+TGG | - | chr4_4:24597820-24597839 | None:intergenic | 20.0% |
| !!! | CAACATATTAGTTTTTGAAA+AGG | - | chr4_4:24597919-24597938 | None:intergenic | 20.0% |
| !! | AAAAGAATTAATTAGTCACT+AGG | - | chr4_4:24597993-24598012 | None:intergenic | 20.0% |
| ! | CCATCATAATCTAAATTTCA+AGG | - | chr4_4:24597117-24597136 | None:intergenic | 25.0% |
| ! | CCTTGAAATTTAGATTATGA+TGG | + | chr4_4:24597114-24597133 | Msa0675510:intron | 25.0% |
| ! | ACTTTCAGCTGATAATTAAT+GGG | - | chr4_4:24597688-24597707 | None:intergenic | 25.0% |
| ! | AAATCCAAGTGAAGAAATTA+AGG | + | chr4_4:24597718-24597737 | Msa0675510:CDS | 25.0% |
| ! | AATCCAAGTGAAGAAATTAA+GGG | + | chr4_4:24597719-24597738 | Msa0675510:CDS | 25.0% |
| ! | GAAATAGATCGTCAATATTA+GGG | - | chr4_4:24598190-24598209 | None:intergenic | 25.0% |
| ! | AGAAATAGATCGTCAATATT+AGG | - | chr4_4:24598191-24598210 | None:intergenic | 25.0% |
| ! | CCATCATAATCTAAATTTCA+AGG | - | chr4_4:24597117-24597136 | None:intergenic | 25.0% |
| ! | CCTTGAAATTTAGATTATGA+TGG | + | chr4_4:24597114-24597133 | Msa0675510:intron | 25.0% |
| ! | ACTTTCAGCTGATAATTAAT+GGG | - | chr4_4:24597688-24597707 | None:intergenic | 25.0% |
| ! | AAATCCAAGTGAAGAAATTA+AGG | + | chr4_4:24597718-24597737 | Msa0675510:CDS | 25.0% |
| ! | AATCCAAGTGAAGAAATTAA+GGG | + | chr4_4:24597719-24597738 | Msa0675510:CDS | 25.0% |
| ! | GAAATAGATCGTCAATATTA+GGG | - | chr4_4:24598190-24598209 | None:intergenic | 25.0% |
| ! | AGAAATAGATCGTCAATATT+AGG | - | chr4_4:24598191-24598210 | None:intergenic | 25.0% |
| TCTTAATAGTGACCAAAACA+AGG | + | chr4_4:24596711-24596730 | Msa0675510:CDS | 30.0% | |
| CTTAATAGTGACCAAAACAA+GGG | + | chr4_4:24596712-24596731 | Msa0675510:CDS | 30.0% | |
| AGACGGAAATACATGTAATT+TGG | + | chr4_4:24596748-24596767 | Msa0675510:intron | 30.0% | |
| CGCTCATCATAAATATATGT+AGG | + | chr4_4:24597411-24597430 | Msa0675510:intron | 30.0% | |
| !! | AAAGAAGCACTTCTTAAAGA+CGG | + | chr4_4:24597538-24597557 | Msa0675510:CDS | 30.0% |
| CGTAGCTCAATATATTGATA+AGG | + | chr4_4:24597622-24597641 | Msa0675510:intron | 30.0% | |
| CACTTTCAGCTGATAATTAA+TGG | - | chr4_4:24597689-24597708 | None:intergenic | 30.0% | |
| ! | AACTAGCATTGCTGATTAAT+GGG | + | chr4_4:24597769-24597788 | Msa0675510:CDS | 30.0% |
| GTTTCAAAACCATATGATCA+AGG | + | chr4_4:24597840-24597859 | Msa0675510:CDS | 30.0% | |
| TTGTTCTTACCTTGATCATA+TGG | - | chr4_4:24597852-24597871 | None:intergenic | 30.0% | |
| TCTTAATAGTGACCAAAACA+AGG | + | chr4_4:24596711-24596730 | Msa0675510:CDS | 30.0% | |
| CTTAATAGTGACCAAAACAA+GGG | + | chr4_4:24596712-24596731 | Msa0675510:CDS | 30.0% | |
| AGACGGAAATACATGTAATT+TGG | + | chr4_4:24596748-24596767 | Msa0675510:intron | 30.0% | |
| CGCTCATCATAAATATATGT+AGG | + | chr4_4:24597411-24597430 | Msa0675510:intron | 30.0% | |
| !! | AAAGAAGCACTTCTTAAAGA+CGG | + | chr4_4:24597538-24597557 | Msa0675510:CDS | 30.0% |
| CGTAGCTCAATATATTGATA+AGG | + | chr4_4:24597622-24597641 | Msa0675510:intron | 30.0% | |
| CACTTTCAGCTGATAATTAA+TGG | - | chr4_4:24597689-24597708 | None:intergenic | 30.0% | |
| ! | AACTAGCATTGCTGATTAAT+GGG | + | chr4_4:24597769-24597788 | Msa0675510:CDS | 30.0% |
| GTTTCAAAACCATATGATCA+AGG | + | chr4_4:24597840-24597859 | Msa0675510:CDS | 30.0% | |
| TTGTTCTTACCTTGATCATA+TGG | - | chr4_4:24597852-24597871 | None:intergenic | 30.0% | |
| GTTTGCAGTAGAATGGTTAA+AGG | - | chr4_4:24596674-24596693 | None:intergenic | 35.0% | |
| AACCATTCTACTGCAAACTT+AGG | + | chr4_4:24596676-24596695 | Msa0675510:CDS | 35.0% | |
| GTCACTATTAAGACCCAAAT+TGG | - | chr4_4:24596704-24596723 | None:intergenic | 35.0% | |
| TGAAACCTTTAATCGAGACT+CGG | + | chr4_4:24597217-24597236 | Msa0675510:CDS | 35.0% | |
| GTTCCCTTAATTTCTTCACT+TGG | - | chr4_4:24597725-24597744 | None:intergenic | 35.0% | |
| ! | GAACTAGCATTGCTGATTAA+TGG | + | chr4_4:24597768-24597787 | Msa0675510:CDS | 35.0% |
| GAGTCTAAATCATTGGACAT+TGG | - | chr4_4:24597813-24597832 | None:intergenic | 35.0% | |
| GACTATTACAAAGCCAAATG+TGG | + | chr4_4:24598090-24598109 | Msa0675510:CDS | 35.0% | |
| AGAACACAACAACATGGAAT+TGG | + | chr4_4:24598142-24598161 | Msa0675510:CDS | 35.0% | |
| GAACACAACAACATGGAATT+GGG | + | chr4_4:24598143-24598162 | Msa0675510:CDS | 35.0% | |
| GTTTGCAGTAGAATGGTTAA+AGG | - | chr4_4:24596674-24596693 | None:intergenic | 35.0% | |
| AACCATTCTACTGCAAACTT+AGG | + | chr4_4:24596676-24596695 | Msa0675510:CDS | 35.0% | |
| GTCACTATTAAGACCCAAAT+TGG | - | chr4_4:24596704-24596723 | None:intergenic | 35.0% | |
| TGAAACCTTTAATCGAGACT+CGG | + | chr4_4:24597217-24597236 | Msa0675510:CDS | 35.0% | |
| GTTCCCTTAATTTCTTCACT+TGG | - | chr4_4:24597725-24597744 | None:intergenic | 35.0% | |
| ! | GAACTAGCATTGCTGATTAA+TGG | + | chr4_4:24597768-24597787 | Msa0675510:CDS | 35.0% |
| GAGTCTAAATCATTGGACAT+TGG | - | chr4_4:24597813-24597832 | None:intergenic | 35.0% | |
| GACTATTACAAAGCCAAATG+TGG | + | chr4_4:24598090-24598109 | Msa0675510:CDS | 35.0% | |
| AGAACACAACAACATGGAAT+TGG | + | chr4_4:24598142-24598161 | Msa0675510:CDS | 35.0% | |
| GAACACAACAACATGGAATT+GGG | + | chr4_4:24598143-24598162 | Msa0675510:CDS | 35.0% | |
| GTTCTGTTTGGAAAGGAACA+TGG | - | chr4_4:24596609-24596628 | None:intergenic | 40.0% | |
| ! | AAAGGTGGTTCTGTTTGGAA+AGG | - | chr4_4:24596616-24596635 | None:intergenic | 40.0% |
| ! | GATACAAAGGTGGTTCTGTT+TGG | - | chr4_4:24596621-24596640 | None:intergenic | 40.0% |
| TCCAACATGTGGTTCAGTTT+GGG | + | chr4_4:24596642-24596661 | Msa0675510:CDS | 40.0% | |
| CTCCTAAGTTTGCAGTAGAA+TGG | - | chr4_4:24596681-24596700 | None:intergenic | 40.0% | |
| TGCAAACTTAGGAGCCAATT+TGG | + | chr4_4:24596687-24596706 | Msa0675510:CDS | 40.0% | |
| GCAAACTTAGGAGCCAATTT+GGG | + | chr4_4:24596688-24596707 | Msa0675510:CDS | 40.0% | |
| TATTTCCGTCTGATCCTCTT+AGG | - | chr4_4:24596739-24596758 | None:intergenic | 40.0% | |
| ACACATGCATTATGAGACGT+TGG | - | chr4_4:24597157-24597176 | None:intergenic | 40.0% | |
| ACTCAGCTCATAGATCAAGA+CGG | + | chr4_4:24597240-24597259 | Msa0675510:CDS | 40.0% | |
| CGAAACAGAACACAACAACA+TGG | + | chr4_4:24598136-24598155 | Msa0675510:CDS | 40.0% | |
| GTTCTGTTTGGAAAGGAACA+TGG | - | chr4_4:24596609-24596628 | None:intergenic | 40.0% | |
| ! | AAAGGTGGTTCTGTTTGGAA+AGG | - | chr4_4:24596616-24596635 | None:intergenic | 40.0% |
| ! | GATACAAAGGTGGTTCTGTT+TGG | - | chr4_4:24596621-24596640 | None:intergenic | 40.0% |
| TCCAACATGTGGTTCAGTTT+GGG | + | chr4_4:24596642-24596661 | Msa0675510:CDS | 40.0% | |
| CTCCTAAGTTTGCAGTAGAA+TGG | - | chr4_4:24596681-24596700 | None:intergenic | 40.0% | |
| TGCAAACTTAGGAGCCAATT+TGG | + | chr4_4:24596687-24596706 | Msa0675510:CDS | 40.0% | |
| GCAAACTTAGGAGCCAATTT+GGG | + | chr4_4:24596688-24596707 | Msa0675510:CDS | 40.0% | |
| TATTTCCGTCTGATCCTCTT+AGG | - | chr4_4:24596739-24596758 | None:intergenic | 40.0% | |
| ACACATGCATTATGAGACGT+TGG | - | chr4_4:24597157-24597176 | None:intergenic | 40.0% | |
| ACTCAGCTCATAGATCAAGA+CGG | + | chr4_4:24597240-24597259 | Msa0675510:CDS | 40.0% | |
| CGAAACAGAACACAACAACA+TGG | + | chr4_4:24598136-24598155 | Msa0675510:CDS | 40.0% | |
| CATGTTGGAGGATACAAAGG+TGG | - | chr4_4:24596631-24596650 | None:intergenic | 45.0% | |
| CCACATGTTGGAGGATACAA+AGG | - | chr4_4:24596634-24596653 | None:intergenic | 45.0% | |
| CCTTTGTATCCTCCAACATG+TGG | + | chr4_4:24596631-24596650 | Msa0675510:CDS | 45.0% | |
| CAAACTGAACCACATGTTGG+AGG | - | chr4_4:24596643-24596662 | None:intergenic | 45.0% | |
| CTCCAACATGTGGTTCAGTT+TGG | + | chr4_4:24596641-24596660 | Msa0675510:CDS | 45.0% | |
| TCCCAAACTGAACCACATGT+TGG | - | chr4_4:24596646-24596665 | None:intergenic | 45.0% | |
| ACCAAAACAAGGGTCCTAAG+AGG | + | chr4_4:24596722-24596741 | Msa0675510:CDS | 45.0% | |
| !! | TCCTCTTAGGACCCTTGTTT+TGG | - | chr4_4:24596726-24596745 | None:intergenic | 45.0% |
| GGTCACACACACACACATTA+AGG | + | chr4_4:24596878-24596897 | Msa0675510:intron | 45.0% | |
| CATGCATTCACCAAAGTCGA+TGG | + | chr4_4:24597022-24597041 | Msa0675510:intron | 45.0% | |
| TGAGTCCGAGTCTCGATTAA+AGG | - | chr4_4:24597225-24597244 | None:intergenic | 45.0% | |
| AGCTCATAGATCAAGACGGA+AGG | + | chr4_4:24597244-24597263 | Msa0675510:CDS | 45.0% | |
| GATCAAGACGGAAGGAAGAT+CGG | + | chr4_4:24597252-24597271 | Msa0675510:CDS | 45.0% | |
| ! | CCAACATCAAACGGTGCTTT+TGG | - | chr4_4:24597480-24597499 | None:intergenic | 45.0% |
| !! | CCAAAAGCACCGTTTGATGT+TGG | + | chr4_4:24597477-24597496 | Msa0675510:CDS | 45.0% |
| TCACACGCTCCAACATCAAA+CGG | - | chr4_4:24597489-24597508 | None:intergenic | 45.0% | |
| CAACAACATGGAATTGGGCA+TGG | + | chr4_4:24598148-24598167 | Msa0675510:CDS | 45.0% | |
| ACATGGAATTGGGCATGGAA+TGG | + | chr4_4:24598153-24598172 | Msa0675510:CDS | 45.0% | |
| CATGTTGGAGGATACAAAGG+TGG | - | chr4_4:24596631-24596650 | None:intergenic | 45.0% | |
| CCACATGTTGGAGGATACAA+AGG | - | chr4_4:24596634-24596653 | None:intergenic | 45.0% | |
| CCTTTGTATCCTCCAACATG+TGG | + | chr4_4:24596631-24596650 | Msa0675510:CDS | 45.0% | |
| CAAACTGAACCACATGTTGG+AGG | - | chr4_4:24596643-24596662 | None:intergenic | 45.0% | |
| CTCCAACATGTGGTTCAGTT+TGG | + | chr4_4:24596641-24596660 | Msa0675510:CDS | 45.0% | |
| TCCCAAACTGAACCACATGT+TGG | - | chr4_4:24596646-24596665 | None:intergenic | 45.0% | |
| ACCAAAACAAGGGTCCTAAG+AGG | + | chr4_4:24596722-24596741 | Msa0675510:CDS | 45.0% | |
| !! | TCCTCTTAGGACCCTTGTTT+TGG | - | chr4_4:24596726-24596745 | None:intergenic | 45.0% |
| GGTCACACACACACACATTA+AGG | + | chr4_4:24596878-24596897 | Msa0675510:intron | 45.0% | |
| CATGCATTCACCAAAGTCGA+TGG | + | chr4_4:24597022-24597041 | Msa0675510:intron | 45.0% | |
| TGAGTCCGAGTCTCGATTAA+AGG | - | chr4_4:24597225-24597244 | None:intergenic | 45.0% | |
| AGCTCATAGATCAAGACGGA+AGG | + | chr4_4:24597244-24597263 | Msa0675510:CDS | 45.0% | |
| GATCAAGACGGAAGGAAGAT+CGG | + | chr4_4:24597252-24597271 | Msa0675510:CDS | 45.0% | |
| ! | CCAACATCAAACGGTGCTTT+TGG | - | chr4_4:24597480-24597499 | None:intergenic | 45.0% |
| !! | CCAAAAGCACCGTTTGATGT+TGG | + | chr4_4:24597477-24597496 | Msa0675510:CDS | 45.0% |
| TCACACGCTCCAACATCAAA+CGG | - | chr4_4:24597489-24597508 | None:intergenic | 45.0% | |
| CAACAACATGGAATTGGGCA+TGG | + | chr4_4:24598148-24598167 | Msa0675510:CDS | 45.0% | |
| ACATGGAATTGGGCATGGAA+TGG | + | chr4_4:24598153-24598172 | Msa0675510:CDS | 45.0% | |
| AGGGTCCTAAGAGGATCAGA+CGG | + | chr4_4:24596731-24596750 | Msa0675510:CDS | 50.0% | |
| GTTGGAGCGTGTGATGTTGA+TGG | + | chr4_4:24597495-24597514 | Msa0675510:CDS | 50.0% | |
| CTACGTCGATCAACAAGCTG+AGG | + | chr4_4:24597746-24597765 | Msa0675510:CDS | 50.0% | |
| ACATAGGTGGCGTCCACATT+TGG | - | chr4_4:24598106-24598125 | None:intergenic | 50.0% | |
| AATGTGGACGCCACCTATGT+CGG | + | chr4_4:24598106-24598125 | Msa0675510:CDS | 50.0% | |
| GTTTCGTGCTCATCCGACAT+AGG | - | chr4_4:24598122-24598141 | None:intergenic | 50.0% | |
| GGAATTGGGCATGGAATGGA+TGG | + | chr4_4:24598157-24598176 | Msa0675510:CDS | 50.0% | |
| AGGGTCCTAAGAGGATCAGA+CGG | + | chr4_4:24596731-24596750 | Msa0675510:CDS | 50.0% | |
| GTTGGAGCGTGTGATGTTGA+TGG | + | chr4_4:24597495-24597514 | Msa0675510:CDS | 50.0% | |
| CTACGTCGATCAACAAGCTG+AGG | + | chr4_4:24597746-24597765 | Msa0675510:CDS | 50.0% | |
| ACATAGGTGGCGTCCACATT+TGG | - | chr4_4:24598106-24598125 | None:intergenic | 50.0% | |
| AATGTGGACGCCACCTATGT+CGG | + | chr4_4:24598106-24598125 | Msa0675510:CDS | 50.0% | |
| GTTTCGTGCTCATCCGACAT+AGG | - | chr4_4:24598122-24598141 | None:intergenic | 50.0% | |
| GGAATTGGGCATGGAATGGA+TGG | + | chr4_4:24598157-24598176 | Msa0675510:CDS | 50.0% | |
| !! | CGATCTGCGACCATCGACTT+TGG | - | chr4_4:24597035-24597054 | None:intergenic | 55.0% |
| TCGTGCTCATCCGACATAGG+TGG | - | chr4_4:24598119-24598138 | None:intergenic | 55.0% | |
| !! | CGATCTGCGACCATCGACTT+TGG | - | chr4_4:24597035-24597054 | None:intergenic | 55.0% |
| TCGTGCTCATCCGACATAGG+TGG | - | chr4_4:24598119-24598138 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 24596589 | 24598214 | 24596589 | ID=Msa0675510;Name=Msa0675510 |
| chr4_4 | mRNA | 24596589 | 24598214 | 24596589 | ID=Msa0675510-mRNA-1;Parent=Msa0675510;Name=Msa0675510-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0|0|1|1|0.8|5|0|227 |
| chr4_4 | exon | 24596589 | 24596761 | 24596589 | ID=Msa0675510-mRNA-1:exon:6738;Parent=Msa0675510-mRNA-1 |
| chr4_4 | exon | 24597217 | 24597313 | 24597217 | ID=Msa0675510-mRNA-1:exon:6739;Parent=Msa0675510-mRNA-1 |
| chr4_4 | exon | 24597433 | 24597559 | 24597433 | ID=Msa0675510-mRNA-1:exon:6740;Parent=Msa0675510-mRNA-1 |
| chr4_4 | exon | 24597700 | 24597861 | 24597700 | ID=Msa0675510-mRNA-1:exon:6741;Parent=Msa0675510-mRNA-1 |
| chr4_4 | exon | 24598090 | 24598214 | 24598090 | ID=Msa0675510-mRNA-1:exon:6742;Parent=Msa0675510-mRNA-1 |
| chr4_4 | CDS | 24596589 | 24596761 | 24596589 | ID=Msa0675510-mRNA-1:cds;Parent=Msa0675510-mRNA-1 |
| chr4_4 | CDS | 24597217 | 24597313 | 24597217 | ID=Msa0675510-mRNA-1:cds;Parent=Msa0675510-mRNA-1 |
| chr4_4 | CDS | 24597433 | 24597559 | 24597433 | ID=Msa0675510-mRNA-1:cds;Parent=Msa0675510-mRNA-1 |
| chr4_4 | CDS | 24597700 | 24597861 | 24597700 | ID=Msa0675510-mRNA-1:cds;Parent=Msa0675510-mRNA-1 |
| chr4_4 | CDS | 24598090 | 24598214 | 24598090 | ID=Msa0675510-mRNA-1:cds;Parent=Msa0675510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
