AlfalfaGEDB | Msa0675510

M. sativa cultivar zhongmu-4 / Msa0675510

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0675510	KEH34366.1	77.632	228	38	3	1	227	4	219	3.20e-117	343

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0675510	A0A072UY95	77.632	228	38	3	1	227	4	219	1.53e-117	343

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0023610	Msa0675510	0.944241	2.797766e-103	-8.615850e-47
Msa0068630	Msa0675510	0.868827	4.888753e-66	-8.615850e-47
Msa0071340	Msa0675510	0.913800	4.039939e-84	-8.615850e-47
Msa0153200	Msa0675510	0.919722	3.153254e-87	-8.615850e-47
Msa0162520	Msa0675510	0.810745	9.895812e-51	-8.615850e-47
Msa0162580	Msa0675510	0.924667	5.188710e-90	-8.615850e-47
Msa0211680	Msa0675510	0.845405	4.146397e-59	-8.615850e-47
Msa0280450	Msa0675510	0.848115	7.527946e-60	-8.615850e-47
Msa0291600	Msa0675510	0.837130	6.232148e-57	-8.615850e-47
Msa0458420	Msa0675510	0.824096	9.713456e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 56 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCACTTCTTAAAGA+CGG	0.616706	4_4:+24597538	Msa0675510:CDS
AAAGGTGGTTCTGTTTGGAA+AGG	0.562830	4_4:-24596613	None:intergenic
AAATCCAAGTGAAGAAATTA+AGG	0.250461	4_4:+24597718	Msa0675510:CDS
AACCATTCTACTGCAAACTT+AGG	0.495074	4_4:+24596676	Msa0675510:CDS
AACTAGCATTGCTGATTAAT+GGG	0.377332	4_4:+24597769	Msa0675510:CDS
AATCCAAGTGAAGAAATTAA+GGG	0.496720	4_4:+24597719	Msa0675510:CDS
AATGTGGACGCCACCTATGT+CGG	0.552697	4_4:+24598106	Msa0675510:CDS
ACATAGGTGGCGTCCACATT+TGG	0.369942	4_4:-24598103	None:intergenic
ACATGGAATTGGGCATGGAA+TGG	0.568585	4_4:+24598153	Msa0675510:CDS
ACCAAAACAAGGGTCCTAAG+AGG	0.590710	4_4:+24596722	Msa0675510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTAATAGTGACCAAAACA+AGG	+	chr4_4:24596711-24596730	Msa0675510:CDS	30.0%
CTTAATAGTGACCAAAACAA+GGG	+	chr4_4:24596712-24596731	Msa0675510:CDS	30.0%
AGACGGAAATACATGTAATT+TGG	+	chr4_4:24596748-24596767	Msa0675510:intron	30.0%
CGCTCATCATAAATATATGT+AGG	+	chr4_4:24597411-24597430	Msa0675510:intron	30.0%
CGTAGCTCAATATATTGATA+AGG	+	chr4_4:24597622-24597641	Msa0675510:intron	30.0%
CACTTTCAGCTGATAATTAA+TGG	-	chr4_4:24597689-24597708	None:intergenic	30.0%
GTTTCAAAACCATATGATCA+AGG	+	chr4_4:24597840-24597859	Msa0675510:CDS	30.0%
TTGTTCTTACCTTGATCATA+TGG	-	chr4_4:24597852-24597871	None:intergenic	30.0%
TCTTAATAGTGACCAAAACA+AGG	+	chr4_4:24596711-24596730	Msa0675510:CDS	30.0%
CTTAATAGTGACCAAAACAA+GGG	+	chr4_4:24596712-24596731	Msa0675510:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	24596589	24598214	24596589	ID=Msa0675510;Name=Msa0675510
chr4_4	mRNA	24596589	24598214	24596589	ID=Msa0675510-mRNA-1;Parent=Msa0675510;Name=Msa0675510-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0\|0\|0\|1\|1\|0.8\|5\|0\|227
chr4_4	exon	24596589	24596761	24596589	ID=Msa0675510-mRNA-1:exon:6738;Parent=Msa0675510-mRNA-1
chr4_4	exon	24597217	24597313	24597217	ID=Msa0675510-mRNA-1:exon:6739;Parent=Msa0675510-mRNA-1
chr4_4	exon	24597433	24597559	24597433	ID=Msa0675510-mRNA-1:exon:6740;Parent=Msa0675510-mRNA-1
chr4_4	exon	24597700	24597861	24597700	ID=Msa0675510-mRNA-1:exon:6741;Parent=Msa0675510-mRNA-1
chr4_4	exon	24598090	24598214	24598090	ID=Msa0675510-mRNA-1:exon:6742;Parent=Msa0675510-mRNA-1
chr4_4	CDS	24596589	24596761	24596589	ID=Msa0675510-mRNA-1:cds;Parent=Msa0675510-mRNA-1
chr4_4	CDS	24597217	24597313	24597217	ID=Msa0675510-mRNA-1:cds;Parent=Msa0675510-mRNA-1
chr4_4	CDS	24597433	24597559	24597433	ID=Msa0675510-mRNA-1:cds;Parent=Msa0675510-mRNA-1
chr4_4	CDS	24597700	24597861	24597700	ID=Msa0675510-mRNA-1:cds;Parent=Msa0675510-mRNA-1
chr4_4	CDS	24598090	24598214	24598090	ID=Msa0675510-mRNA-1:cds;Parent=Msa0675510-mRNA-1

Gene Sequence

>Msa0675510

ATGGAGGGAAATTACAACCATGTTCCTTTCCAAACAGAACCACCTTTGTATCCTCCAACATGTGGTTCAGTTTGGGATGCTACCTTTAACCATTCTACTGCAAACTTAGGAGCCAATTTGGGTCTTAATAGTGACCAAAACAAGGGTCCTAAGAGGATCAGACGGAAATACATTGAAACCTTTAATCGAGACTCGGACTCAGCTCATAGATCAAGACGGAAGGAAGATCGGTATTTTACCTATTTGAGTAAAAAAGTTAAAGAAATTGAGGCTCAAATAACTGATCTTCGCTCACAAGTTGAATTAAAAAAAAACCAAAAGCACCGTTTGATGTTGGAGCGTGTGATGTTGATGGATCAAGTGACAATTCATCATAAAGAAGCACTTCTTAAAGACGCTGAAAGTGAAGAACTGAAAATCCAAGTGAAGAAATTAAGGGAACTCTACGTCGATCAACAAGCTGAGGAACTAGCATTGCTGATTAATGGGAATGATACTAATGTTCAACCAATGTCCAATGATTTAGACTCAAATTATGTTTCAAAACCATATGATCAAGGACTATTACAAAGCCAAATGTGGACGCCACCTATGTCGGATGAGCACGAAACAGAACACAACAACATGGAATTGGGCATGGAATGGATGGATCAGAACCCTAATATTGACGATCTATTTCTATGA

Protein sequence

>Msa0675510

MEGNYNHVPFQTEPPLYPPTCGSVWDATFNHSTANLGANLGLNSDQNKGPKRIRRKYIETFNRDSDSAHRSRRKEDRYFTYLSKKVKEIEAQITDLRSQVELKKNQKHRLMLERVMLMDQVTIHHKEALLKDAESEELKIQVKKLRELYVDQQAEELALLINGNDTNVQPMSNDLDSNYVSKPYDQGLLQSQMWTPPMSDEHETEHNNMELGMEWMDQNPNIDDLFL*