Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023610 | Msa0068630 | 0.863121 | 3.119708e-64 | -8.615850e-47 |
| Msa0023610 | Msa0071340 | 0.930455 | 1.596838e-93 | -8.615850e-47 |
| Msa0023610 | Msa0153200 | 0.927582 | 9.611031e-92 | -8.615850e-47 |
| Msa0023610 | Msa0162520 | 0.808951 | 2.406231e-50 | -8.615850e-47 |
| Msa0023610 | Msa0162580 | 0.888222 | 7.149448e-73 | -8.615850e-47 |
| Msa0023610 | Msa0211680 | 0.876525 | 1.302552e-68 | -8.615850e-47 |
| Msa0023610 | Msa0232850 | 0.801039 | 1.086629e-48 | -8.615850e-47 |
| Msa0023610 | Msa0280450 | 0.857940 | 1.158930e-62 | -8.615850e-47 |
| Msa0023610 | Msa0291600 | 0.858306 | 9.020834e-63 | -8.615850e-47 |
| Msa0023610 | Msa0458420 | 0.806273 | 8.912722e-50 | -8.615850e-47 |
| Msa0023610 | Msa0675510 | 0.944241 | 2.797766e-103 | -8.615850e-47 |
| Msa0023610 | Msa0722510 | 0.808588 | 2.876625e-50 | -8.615850e-47 |
| Msa0023610 | Msa0745110 | 0.801019 | 1.097046e-48 | -8.615850e-47 |
| Msa0023610 | Msa0815320 | 0.813142 | 2.973514e-51 | -8.615850e-47 |
| Msa0023610 | Msa0818030 | 0.801354 | 9.367114e-49 | -8.615850e-47 |
| Msa0023610 | Msa0858360 | 0.820366 | 7.123637e-53 | -8.615850e-47 |
| Msa0023610 | Msa0884920 | 0.843841 | 1.093126e-58 | -8.615850e-47 |
| Msa0023610 | Msa0902020 | 0.806268 | 8.932207e-50 | -8.615850e-47 |
| Msa0023610 | Msa0912500 | 0.841185 | 5.540092e-58 | -8.615850e-47 |
| Msa0023610 | Msa0951330 | 0.808889 | 2.480838e-50 | -8.615850e-47 |
| Msa0023610 | Msa0957860 | 0.821297 | 4.351426e-53 | -8.615850e-47 |
| Msa0023610 | Msa0957960 | 0.821701 | 3.510015e-53 | -8.615850e-47 |
| Msa0023610 | Msa0962360 | 0.810363 | 1.196602e-50 | -8.615850e-47 |
| Msa0023610 | Msa1006250 | 0.811727 | 6.058491e-51 | -8.615850e-47 |
| Msa0023610 | Msa1021740 | 0.815840 | 7.523514e-52 | -8.615850e-47 |
| Msa0023610 | Msa1021750 | 0.853758 | 1.933335e-61 | -8.615850e-47 |
| Msa0023610 | Msa1048540 | 0.813301 | 2.742752e-51 | -8.615850e-47 |
| Msa0023610 | Msa1060520 | 0.801763 | 7.722519e-49 | -8.615850e-47 |
| Msa0023610 | Msa1092990 | 0.809867 | 1.530053e-50 | -8.615850e-47 |
| Msa0023610 | Msa1100180 | 0.807432 | 5.070606e-50 | -8.615850e-47 |
| Msa0023610 | Msa1131820 | 0.806353 | 8.573255e-50 | -8.615850e-47 |
| Msa0023610 | Msa1178650 | 0.804550 | 2.047342e-49 | -8.615850e-47 |
| Msa0023610 | Msa1178660 | 0.803802 | 2.929224e-49 | -8.615850e-47 |
| Msa0023610 | Msa1182730 | 0.826803 | 2.220155e-54 | -8.615850e-47 |
| Msa0023610 | Msa1191210 | 0.809047 | 2.294892e-50 | -8.615850e-47 |
| Msa0023610 | Msa1232060 | 0.825415 | 4.747487e-54 | -8.615850e-47 |
| Msa0023610 | Msa1288000 | 0.813250 | 2.815505e-51 | -8.615850e-47 |
| Msa0023610 | Msa1310530 | 0.809548 | 1.791828e-50 | -8.615850e-47 |
| Msa0023610 | Msa1347360 | 0.828027 | 1.129573e-54 | -8.615850e-47 |
| Msa0023610 | Msa1359820 | 0.814349 | 1.612095e-51 | -8.615850e-47 |
| Msa0023610 | Msa1423990 | 0.831817 | 1.346184e-55 | -8.615850e-47 |
| Msa0023610 | Msa1463140 | 0.926528 | 4.142906e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATAGATCGTCAATATT+AGG | 0.196396 | 1_1:-45024096 | None:intergenic |
| TGCAAACTTAGGAGCCAATT+TGG | 0.218033 | 1_1:+45022566 | Msa0023610:CDS |
| AAATCCAAGTGAAGAAATTA+AGG | 0.250461 | 1_1:+45023598 | Msa0023610:CDS |
| GAACTAGCATTGCTGATTAA+TGG | 0.258098 | 1_1:+45023648 | Msa0023610:CDS |
| GTCACTATTAAGACCCAAAT+TGG | 0.259503 | 1_1:-45022580 | None:intergenic |
| TGAGTCCGAGTCTCGATTAA+AGG | 0.273789 | 1_1:-45023102 | None:intergenic |
| TCCTCTTAGGACCCTTGTTT+TGG | 0.280514 | 1_1:-45022602 | None:intergenic |
| CTCCAACATGTGGTTCAGTT+TGG | 0.312413 | 1_1:+45022520 | Msa0023610:CDS |
| CCAACATCAAACGGTGCTTT+TGG | 0.325999 | 1_1:-45023357 | None:intergenic |
| TATTTCCGTCTGATCCTCTT+AGG | 0.332160 | 1_1:-45022615 | None:intergenic |
| ACACAGGTGGCGTCCACATT+TGG | 0.348738 | 1_1:-45024011 | None:intergenic |
| TCCAACATGTGGTTCAGTTT+GGG | 0.349563 | 1_1:+45022521 | Msa0023610:CDS |
| GTTTGCAGTAGAATGGTTAA+AGG | 0.350732 | 1_1:-45022550 | None:intergenic |
| TTGTTCTTACCTTGATCATA+TGG | 0.360817 | 1_1:-45023729 | None:intergenic |
| AGAACACAACAACATGGAAT+TGG | 0.366539 | 1_1:+45024050 | Msa0023610:CDS |
| ATAATTTGAGTCTAAATCAT+TGG | 0.376358 | 1_1:-45023697 | None:intergenic |
| AACTAGCATTGCTGATTAAT+GGG | 0.377332 | 1_1:+45023649 | Msa0023610:CDS |
| GAAATAGATCGTCAATATTA+GGG | 0.384297 | 1_1:-45024095 | None:intergenic |
| GATACAAAGGTGGTTCTGTT+TGG | 0.388046 | 1_1:-45022497 | None:intergenic |
| GCAAACTTAGGAGCCAATTT+GGG | 0.421774 | 1_1:+45022567 | Msa0023610:CDS |
| CTCCTAAGTTTGCAGTAGAA+TGG | 0.429162 | 1_1:-45022557 | None:intergenic |
| GAACACAACAACATGGAATT+GGG | 0.459020 | 1_1:+45024051 | Msa0023610:CDS |
| GTTCCCTTAATTTCTTCACT+TGG | 0.466132 | 1_1:-45023602 | None:intergenic |
| GGAATTGGGCATGGAATGGA+TGG | 0.466811 | 1_1:+45024065 | Msa0023610:CDS |
| GTTTCAAAACCATATGATCA+AGG | 0.472120 | 1_1:+45023720 | Msa0023610:CDS |
| AACCATTCTACTGCAAACTT+AGG | 0.495074 | 1_1:+45022555 | Msa0023610:CDS |
| CCAAAAGCACCGTTTGATGT+TGG | 0.496047 | 1_1:+45023357 | Msa0023610:CDS |
| AATCCAAGTGAAGAAATTAA+GGG | 0.496720 | 1_1:+45023599 | Msa0023610:CDS |
| GTTGGAGCGTGTGATGTTGA+TGG | 0.514672 | 1_1:+45023375 | Msa0023610:CDS |
| TCACACGCTCCAACATCAAA+CGG | 0.549845 | 1_1:-45023366 | None:intergenic |
| AAAGGTGGTTCTGTTTGGAA+AGG | 0.562830 | 1_1:-45022492 | None:intergenic |
| ACATGGAATTGGGCATGGAA+TGG | 0.568585 | 1_1:+45024061 | Msa0023610:CDS |
| TCTTAATAGTGACCAAAACA+AGG | 0.569518 | 1_1:+45022590 | Msa0023610:CDS |
| GAGTCTAAATCATTGGACAT+TGG | 0.575430 | 1_1:-45023690 | None:intergenic |
| GATCAAGACGGAAGGAAGAT+CGG | 0.579150 | 1_1:+45023132 | Msa0023610:CDS |
| GTTTCGTGCTCATCCGACAC+AGG | 0.584800 | 1_1:-45024027 | None:intergenic |
| GACTATTACAAAGCCAAATG+TGG | 0.588677 | 1_1:+45023998 | Msa0023610:CDS |
| CAACAACATGGAATTGGGCA+TGG | 0.590352 | 1_1:+45024056 | Msa0023610:CDS |
| ACCAAAACAAGGGTCCTAAG+AGG | 0.590710 | 1_1:+45022601 | Msa0023610:CDS |
| GTTCTGTTTGGAAAGGAACA+TGG | 0.591842 | 1_1:-45022485 | None:intergenic |
| TCCCAAACTGAACCACATGT+TGG | 0.599459 | 1_1:-45022522 | None:intergenic |
| AATGTGGACGCCACCTGTGT+CGG | 0.599502 | 1_1:+45024014 | Msa0023610:CDS |
| CAAACTGAACCACATGTTGG+AGG | 0.601431 | 1_1:-45022519 | None:intergenic |
| AAAGAAGCACTTCTTAAAGA+CGG | 0.616706 | 1_1:+45023418 | Msa0023610:CDS |
| CACTTAGAGAACATAATGGA+GGG | 0.621926 | 1_1:+45022453 | None:intergenic |
| CCACATGTTGGAGGATACAA+AGG | 0.621996 | 1_1:-45022510 | None:intergenic |
| AGCTCATAGATCAAGACGGA+AGG | 0.626708 | 1_1:+45023124 | Msa0023610:CDS |
| CGAAACAGAACACAACAACA+TGG | 0.635296 | 1_1:+45024044 | Msa0023610:CDS |
| CTACGTCGATCAACAAGCTG+AGG | 0.639200 | 1_1:+45023626 | Msa0023610:CDS |
| CCTTTGTATCCTCCAACATG+TGG | 0.647083 | 1_1:+45022510 | Msa0023610:CDS |
| TGAAACCTTTAATCGAGACT+CGG | 0.649080 | 1_1:+45023097 | Msa0023610:CDS |
| TCGTGCTCATCCGACACAGG+TGG | 0.657799 | 1_1:-45024024 | None:intergenic |
| AGGGTCCTAAGAGGATCAGA+CGG | 0.663320 | 1_1:+45022610 | Msa0023610:CDS |
| ACTCAGCTCATAGATCAAGA+CGG | 0.691685 | 1_1:+45023120 | Msa0023610:CDS |
| CTTAATAGTGACCAAAACAA+GGG | 0.698882 | 1_1:+45022591 | Msa0023610:CDS |
| CATGTTGGAGGATACAAAGG+TGG | 0.702436 | 1_1:-45022507 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAAAAAAAAAAATTG+CGG | + | chr1_1:45022737-45022756 | Msa0023610:intron | 10.0% |
| !!! | AAAAATATTAGTTTTTGAAA+AGG | - | chr1_1:45023799-45023818 | None:intergenic | 10.0% |
| !! | AAACAAAAAAAAAAAAATTG+CGG | + | chr1_1:45022737-45022756 | Msa0023610:intron | 10.0% |
| !!! | AAAAATATTAGTTTTTGAAA+AGG | - | chr1_1:45023799-45023818 | None:intergenic | 10.0% |
| !!! | TTTGACATTTTAAATAATTG+TGG | + | chr1_1:45022698-45022717 | Msa0023610:intron | 15.0% |
| !!! | TTTAACTTTTTTACTCAAAT+AGG | - | chr1_1:45023165-45023184 | None:intergenic | 15.0% |
| !! | TAAAAAAGTTAAAGAAATTG+AGG | + | chr1_1:45023172-45023191 | Msa0023610:CDS | 15.0% |
| !!! | TTACTTTTTTAAAATGACAT+AGG | + | chr1_1:45023976-45023995 | Msa0023610:intron | 15.0% |
| !!! | TTTGACATTTTAAATAATTG+TGG | + | chr1_1:45022698-45022717 | Msa0023610:intron | 15.0% |
| !!! | TTTAACTTTTTTACTCAAAT+AGG | - | chr1_1:45023165-45023184 | None:intergenic | 15.0% |
| !! | TAAAAAAGTTAAAGAAATTG+AGG | + | chr1_1:45023172-45023191 | Msa0023610:CDS | 15.0% |
| !!! | TTACTTTTTTAAAATGACAT+AGG | + | chr1_1:45023976-45023995 | Msa0023610:intron | 15.0% |
| !! | TTAAAATGTCAAATATCACA+AGG | - | chr1_1:45022691-45022710 | None:intergenic | 20.0% |
| !! | ATAATTTGAGTCTAAATCAT+TGG | - | chr1_1:45023700-45023719 | None:intergenic | 20.0% |
| !! | AAAAGAATTAATTAGTCACT+AGG | - | chr1_1:45023901-45023920 | None:intergenic | 20.0% |
| !! | TTAAAATGTCAAATATCACA+AGG | - | chr1_1:45022691-45022710 | None:intergenic | 20.0% |
| !! | ATAATTTGAGTCTAAATCAT+TGG | - | chr1_1:45023700-45023719 | None:intergenic | 20.0% |
| !! | AAAAGAATTAATTAGTCACT+AGG | - | chr1_1:45023901-45023920 | None:intergenic | 20.0% |
| ! | CCATCATAATCTAAATTTCA+AGG | - | chr1_1:45022997-45023016 | None:intergenic | 25.0% |
| ! | CCTTGAAATTTAGATTATGA+TGG | + | chr1_1:45022994-45023013 | Msa0023610:intron | 25.0% |
| ! | ACTTTCAGCTGATAATTAAT+GGG | - | chr1_1:45023568-45023587 | None:intergenic | 25.0% |
| ! | AAATCCAAGTGAAGAAATTA+AGG | + | chr1_1:45023598-45023617 | Msa0023610:CDS | 25.0% |
| ! | AATCCAAGTGAAGAAATTAA+GGG | + | chr1_1:45023599-45023618 | Msa0023610:CDS | 25.0% |
| ! | GAAATAGATCGTCAATATTA+GGG | - | chr1_1:45024098-45024117 | None:intergenic | 25.0% |
| ! | AGAAATAGATCGTCAATATT+AGG | - | chr1_1:45024099-45024118 | None:intergenic | 25.0% |
| ! | CCATCATAATCTAAATTTCA+AGG | - | chr1_1:45022997-45023016 | None:intergenic | 25.0% |
| ! | CCTTGAAATTTAGATTATGA+TGG | + | chr1_1:45022994-45023013 | Msa0023610:intron | 25.0% |
| ! | ACTTTCAGCTGATAATTAAT+GGG | - | chr1_1:45023568-45023587 | None:intergenic | 25.0% |
| ! | AAATCCAAGTGAAGAAATTA+AGG | + | chr1_1:45023598-45023617 | Msa0023610:CDS | 25.0% |
| ! | AATCCAAGTGAAGAAATTAA+GGG | + | chr1_1:45023599-45023618 | Msa0023610:CDS | 25.0% |
| ! | GAAATAGATCGTCAATATTA+GGG | - | chr1_1:45024098-45024117 | None:intergenic | 25.0% |
| ! | AGAAATAGATCGTCAATATT+AGG | - | chr1_1:45024099-45024118 | None:intergenic | 25.0% |
| TCTTAATAGTGACCAAAACA+AGG | + | chr1_1:45022590-45022609 | Msa0023610:CDS | 30.0% | |
| CTTAATAGTGACCAAAACAA+GGG | + | chr1_1:45022591-45022610 | Msa0023610:CDS | 30.0% | |
| AGACGGAAATACATGTAATT+TGG | + | chr1_1:45022627-45022646 | Msa0023610:intron | 30.0% | |
| CGCTCATCATAAATATATGT+AGG | + | chr1_1:45023291-45023310 | Msa0023610:intron | 30.0% | |
| !! | AAAGAAGCACTTCTTAAAGA+CGG | + | chr1_1:45023418-45023437 | Msa0023610:CDS | 30.0% |
| CGTAGCTCAATATATTGATA+AGG | + | chr1_1:45023502-45023521 | Msa0023610:intron | 30.0% | |
| CACTTTCAGCTGATAATTAA+TGG | - | chr1_1:45023569-45023588 | None:intergenic | 30.0% | |
| ! | AACTAGCATTGCTGATTAAT+GGG | + | chr1_1:45023649-45023668 | Msa0023610:CDS | 30.0% |
| GTTTCAAAACCATATGATCA+AGG | + | chr1_1:45023720-45023739 | Msa0023610:CDS | 30.0% | |
| TTGTTCTTACCTTGATCATA+TGG | - | chr1_1:45023732-45023751 | None:intergenic | 30.0% | |
| TCTTAATAGTGACCAAAACA+AGG | + | chr1_1:45022590-45022609 | Msa0023610:CDS | 30.0% | |
| CTTAATAGTGACCAAAACAA+GGG | + | chr1_1:45022591-45022610 | Msa0023610:CDS | 30.0% | |
| AGACGGAAATACATGTAATT+TGG | + | chr1_1:45022627-45022646 | Msa0023610:intron | 30.0% | |
| CGCTCATCATAAATATATGT+AGG | + | chr1_1:45023291-45023310 | Msa0023610:intron | 30.0% | |
| !! | AAAGAAGCACTTCTTAAAGA+CGG | + | chr1_1:45023418-45023437 | Msa0023610:CDS | 30.0% |
| CGTAGCTCAATATATTGATA+AGG | + | chr1_1:45023502-45023521 | Msa0023610:intron | 30.0% | |
| CACTTTCAGCTGATAATTAA+TGG | - | chr1_1:45023569-45023588 | None:intergenic | 30.0% | |
| ! | AACTAGCATTGCTGATTAAT+GGG | + | chr1_1:45023649-45023668 | Msa0023610:CDS | 30.0% |
| GTTTCAAAACCATATGATCA+AGG | + | chr1_1:45023720-45023739 | Msa0023610:CDS | 30.0% | |
| TTGTTCTTACCTTGATCATA+TGG | - | chr1_1:45023732-45023751 | None:intergenic | 30.0% | |
| GTTTGCAGTAGAATGGTTAA+AGG | - | chr1_1:45022553-45022572 | None:intergenic | 35.0% | |
| AACCATTCTACTGCAAACTT+AGG | + | chr1_1:45022555-45022574 | Msa0023610:CDS | 35.0% | |
| GTCACTATTAAGACCCAAAT+TGG | - | chr1_1:45022583-45022602 | None:intergenic | 35.0% | |
| TGAAACCTTTAATCGAGACT+CGG | + | chr1_1:45023097-45023116 | Msa0023610:CDS | 35.0% | |
| GTTCCCTTAATTTCTTCACT+TGG | - | chr1_1:45023605-45023624 | None:intergenic | 35.0% | |
| ! | GAACTAGCATTGCTGATTAA+TGG | + | chr1_1:45023648-45023667 | Msa0023610:CDS | 35.0% |
| GAGTCTAAATCATTGGACAT+TGG | - | chr1_1:45023693-45023712 | None:intergenic | 35.0% | |
| GACTATTACAAAGCCAAATG+TGG | + | chr1_1:45023998-45024017 | Msa0023610:CDS | 35.0% | |
| AGAACACAACAACATGGAAT+TGG | + | chr1_1:45024050-45024069 | Msa0023610:CDS | 35.0% | |
| GAACACAACAACATGGAATT+GGG | + | chr1_1:45024051-45024070 | Msa0023610:CDS | 35.0% | |
| GTTTGCAGTAGAATGGTTAA+AGG | - | chr1_1:45022553-45022572 | None:intergenic | 35.0% | |
| AACCATTCTACTGCAAACTT+AGG | + | chr1_1:45022555-45022574 | Msa0023610:CDS | 35.0% | |
| GTCACTATTAAGACCCAAAT+TGG | - | chr1_1:45022583-45022602 | None:intergenic | 35.0% | |
| TGAAACCTTTAATCGAGACT+CGG | + | chr1_1:45023097-45023116 | Msa0023610:CDS | 35.0% | |
| GTTCCCTTAATTTCTTCACT+TGG | - | chr1_1:45023605-45023624 | None:intergenic | 35.0% | |
| ! | GAACTAGCATTGCTGATTAA+TGG | + | chr1_1:45023648-45023667 | Msa0023610:CDS | 35.0% |
| GAGTCTAAATCATTGGACAT+TGG | - | chr1_1:45023693-45023712 | None:intergenic | 35.0% | |
| GACTATTACAAAGCCAAATG+TGG | + | chr1_1:45023998-45024017 | Msa0023610:CDS | 35.0% | |
| AGAACACAACAACATGGAAT+TGG | + | chr1_1:45024050-45024069 | Msa0023610:CDS | 35.0% | |
| GAACACAACAACATGGAATT+GGG | + | chr1_1:45024051-45024070 | Msa0023610:CDS | 35.0% | |
| GTTCTGTTTGGAAAGGAACA+TGG | - | chr1_1:45022488-45022507 | None:intergenic | 40.0% | |
| ! | AAAGGTGGTTCTGTTTGGAA+AGG | - | chr1_1:45022495-45022514 | None:intergenic | 40.0% |
| ! | GATACAAAGGTGGTTCTGTT+TGG | - | chr1_1:45022500-45022519 | None:intergenic | 40.0% |
| TCCAACATGTGGTTCAGTTT+GGG | + | chr1_1:45022521-45022540 | Msa0023610:CDS | 40.0% | |
| CTCCTAAGTTTGCAGTAGAA+TGG | - | chr1_1:45022560-45022579 | None:intergenic | 40.0% | |
| TGCAAACTTAGGAGCCAATT+TGG | + | chr1_1:45022566-45022585 | Msa0023610:CDS | 40.0% | |
| GCAAACTTAGGAGCCAATTT+GGG | + | chr1_1:45022567-45022586 | Msa0023610:CDS | 40.0% | |
| TATTTCCGTCTGATCCTCTT+AGG | - | chr1_1:45022618-45022637 | None:intergenic | 40.0% | |
| ACACATGCATTATGAGACGT+TGG | - | chr1_1:45023037-45023056 | None:intergenic | 40.0% | |
| ACTCAGCTCATAGATCAAGA+CGG | + | chr1_1:45023120-45023139 | Msa0023610:CDS | 40.0% | |
| CGAAACAGAACACAACAACA+TGG | + | chr1_1:45024044-45024063 | Msa0023610:CDS | 40.0% | |
| GTTCTGTTTGGAAAGGAACA+TGG | - | chr1_1:45022488-45022507 | None:intergenic | 40.0% | |
| ! | AAAGGTGGTTCTGTTTGGAA+AGG | - | chr1_1:45022495-45022514 | None:intergenic | 40.0% |
| ! | GATACAAAGGTGGTTCTGTT+TGG | - | chr1_1:45022500-45022519 | None:intergenic | 40.0% |
| TCCAACATGTGGTTCAGTTT+GGG | + | chr1_1:45022521-45022540 | Msa0023610:CDS | 40.0% | |
| CTCCTAAGTTTGCAGTAGAA+TGG | - | chr1_1:45022560-45022579 | None:intergenic | 40.0% | |
| TGCAAACTTAGGAGCCAATT+TGG | + | chr1_1:45022566-45022585 | Msa0023610:CDS | 40.0% | |
| GCAAACTTAGGAGCCAATTT+GGG | + | chr1_1:45022567-45022586 | Msa0023610:CDS | 40.0% | |
| TATTTCCGTCTGATCCTCTT+AGG | - | chr1_1:45022618-45022637 | None:intergenic | 40.0% | |
| ACACATGCATTATGAGACGT+TGG | - | chr1_1:45023037-45023056 | None:intergenic | 40.0% | |
| ACTCAGCTCATAGATCAAGA+CGG | + | chr1_1:45023120-45023139 | Msa0023610:CDS | 40.0% | |
| CGAAACAGAACACAACAACA+TGG | + | chr1_1:45024044-45024063 | Msa0023610:CDS | 40.0% | |
| CATGTTGGAGGATACAAAGG+TGG | - | chr1_1:45022510-45022529 | None:intergenic | 45.0% | |
| CCACATGTTGGAGGATACAA+AGG | - | chr1_1:45022513-45022532 | None:intergenic | 45.0% | |
| CCTTTGTATCCTCCAACATG+TGG | + | chr1_1:45022510-45022529 | Msa0023610:CDS | 45.0% | |
| CAAACTGAACCACATGTTGG+AGG | - | chr1_1:45022522-45022541 | None:intergenic | 45.0% | |
| CTCCAACATGTGGTTCAGTT+TGG | + | chr1_1:45022520-45022539 | Msa0023610:CDS | 45.0% | |
| TCCCAAACTGAACCACATGT+TGG | - | chr1_1:45022525-45022544 | None:intergenic | 45.0% | |
| ACCAAAACAAGGGTCCTAAG+AGG | + | chr1_1:45022601-45022620 | Msa0023610:CDS | 45.0% | |
| !! | TCCTCTTAGGACCCTTGTTT+TGG | - | chr1_1:45022605-45022624 | None:intergenic | 45.0% |
| GGTCACACACACACACATTA+AGG | + | chr1_1:45022758-45022777 | Msa0023610:intron | 45.0% | |
| CATGCATTCACCAAAGTCGA+TGG | + | chr1_1:45022902-45022921 | Msa0023610:intron | 45.0% | |
| TGAGTCCGAGTCTCGATTAA+AGG | - | chr1_1:45023105-45023124 | None:intergenic | 45.0% | |
| AGCTCATAGATCAAGACGGA+AGG | + | chr1_1:45023124-45023143 | Msa0023610:CDS | 45.0% | |
| GATCAAGACGGAAGGAAGAT+CGG | + | chr1_1:45023132-45023151 | Msa0023610:CDS | 45.0% | |
| ! | CCAACATCAAACGGTGCTTT+TGG | - | chr1_1:45023360-45023379 | None:intergenic | 45.0% |
| !! | CCAAAAGCACCGTTTGATGT+TGG | + | chr1_1:45023357-45023376 | Msa0023610:CDS | 45.0% |
| TCACACGCTCCAACATCAAA+CGG | - | chr1_1:45023369-45023388 | None:intergenic | 45.0% | |
| CAACAACATGGAATTGGGCA+TGG | + | chr1_1:45024056-45024075 | Msa0023610:CDS | 45.0% | |
| ACATGGAATTGGGCATGGAA+TGG | + | chr1_1:45024061-45024080 | Msa0023610:CDS | 45.0% | |
| CATGTTGGAGGATACAAAGG+TGG | - | chr1_1:45022510-45022529 | None:intergenic | 45.0% | |
| CCACATGTTGGAGGATACAA+AGG | - | chr1_1:45022513-45022532 | None:intergenic | 45.0% | |
| CCTTTGTATCCTCCAACATG+TGG | + | chr1_1:45022510-45022529 | Msa0023610:CDS | 45.0% | |
| CAAACTGAACCACATGTTGG+AGG | - | chr1_1:45022522-45022541 | None:intergenic | 45.0% | |
| CTCCAACATGTGGTTCAGTT+TGG | + | chr1_1:45022520-45022539 | Msa0023610:CDS | 45.0% | |
| TCCCAAACTGAACCACATGT+TGG | - | chr1_1:45022525-45022544 | None:intergenic | 45.0% | |
| ACCAAAACAAGGGTCCTAAG+AGG | + | chr1_1:45022601-45022620 | Msa0023610:CDS | 45.0% | |
| !! | TCCTCTTAGGACCCTTGTTT+TGG | - | chr1_1:45022605-45022624 | None:intergenic | 45.0% |
| GGTCACACACACACACATTA+AGG | + | chr1_1:45022758-45022777 | Msa0023610:intron | 45.0% | |
| CATGCATTCACCAAAGTCGA+TGG | + | chr1_1:45022902-45022921 | Msa0023610:intron | 45.0% | |
| TGAGTCCGAGTCTCGATTAA+AGG | - | chr1_1:45023105-45023124 | None:intergenic | 45.0% | |
| AGCTCATAGATCAAGACGGA+AGG | + | chr1_1:45023124-45023143 | Msa0023610:CDS | 45.0% | |
| GATCAAGACGGAAGGAAGAT+CGG | + | chr1_1:45023132-45023151 | Msa0023610:CDS | 45.0% | |
| ! | CCAACATCAAACGGTGCTTT+TGG | - | chr1_1:45023360-45023379 | None:intergenic | 45.0% |
| !! | CCAAAAGCACCGTTTGATGT+TGG | + | chr1_1:45023357-45023376 | Msa0023610:CDS | 45.0% |
| TCACACGCTCCAACATCAAA+CGG | - | chr1_1:45023369-45023388 | None:intergenic | 45.0% | |
| CAACAACATGGAATTGGGCA+TGG | + | chr1_1:45024056-45024075 | Msa0023610:CDS | 45.0% | |
| ACATGGAATTGGGCATGGAA+TGG | + | chr1_1:45024061-45024080 | Msa0023610:CDS | 45.0% | |
| !!! | TAATTATTATTTATTTGTTT+TGG | + | chr1_1:45023867-45023886 | Msa0023610:intron | 5.0% |
| !!! | TAATTATTATTTATTTGTTT+TGG | + | chr1_1:45023867-45023886 | Msa0023610:intron | 5.0% |
| AGGGTCCTAAGAGGATCAGA+CGG | + | chr1_1:45022610-45022629 | Msa0023610:CDS | 50.0% | |
| GTTGGAGCGTGTGATGTTGA+TGG | + | chr1_1:45023375-45023394 | Msa0023610:CDS | 50.0% | |
| CTACGTCGATCAACAAGCTG+AGG | + | chr1_1:45023626-45023645 | Msa0023610:CDS | 50.0% | |
| GGAATTGGGCATGGAATGGA+TGG | + | chr1_1:45024065-45024084 | Msa0023610:CDS | 50.0% | |
| AGGGTCCTAAGAGGATCAGA+CGG | + | chr1_1:45022610-45022629 | Msa0023610:CDS | 50.0% | |
| GTTGGAGCGTGTGATGTTGA+TGG | + | chr1_1:45023375-45023394 | Msa0023610:CDS | 50.0% | |
| CTACGTCGATCAACAAGCTG+AGG | + | chr1_1:45023626-45023645 | Msa0023610:CDS | 50.0% | |
| GGAATTGGGCATGGAATGGA+TGG | + | chr1_1:45024065-45024084 | Msa0023610:CDS | 50.0% | |
| !! | CGATCTGCGACCATCGACTT+TGG | - | chr1_1:45022915-45022934 | None:intergenic | 55.0% |
| ACACAGGTGGCGTCCACATT+TGG | - | chr1_1:45024014-45024033 | None:intergenic | 55.0% | |
| AATGTGGACGCCACCTGTGT+CGG | + | chr1_1:45024014-45024033 | Msa0023610:CDS | 55.0% | |
| GTTTCGTGCTCATCCGACAC+AGG | - | chr1_1:45024030-45024049 | None:intergenic | 55.0% | |
| !! | CGATCTGCGACCATCGACTT+TGG | - | chr1_1:45022915-45022934 | None:intergenic | 55.0% |
| ACACAGGTGGCGTCCACATT+TGG | - | chr1_1:45024014-45024033 | None:intergenic | 55.0% | |
| AATGTGGACGCCACCTGTGT+CGG | + | chr1_1:45024014-45024033 | Msa0023610:CDS | 55.0% | |
| GTTTCGTGCTCATCCGACAC+AGG | - | chr1_1:45024030-45024049 | None:intergenic | 55.0% | |
| TCGTGCTCATCCGACACAGG+TGG | - | chr1_1:45024027-45024046 | None:intergenic | 60.0% | |
| TCGTGCTCATCCGACACAGG+TGG | - | chr1_1:45024027-45024046 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 45022468 | 45024122 | 45022468 | ID=Msa0023610;Name=Msa0023610 |
| chr1_1 | mRNA | 45022468 | 45024122 | 45022468 | ID=Msa0023610-mRNA-1;Parent=Msa0023610;Name=Msa0023610-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0|0|1|1|0.8|5|0|227 |
| chr1_1 | exon | 45022468 | 45022640 | 45022468 | ID=Msa0023610-mRNA-1:exon:12926;Parent=Msa0023610-mRNA-1 |
| chr1_1 | exon | 45023097 | 45023193 | 45023097 | ID=Msa0023610-mRNA-1:exon:12927;Parent=Msa0023610-mRNA-1 |
| chr1_1 | exon | 45023313 | 45023439 | 45023313 | ID=Msa0023610-mRNA-1:exon:12928;Parent=Msa0023610-mRNA-1 |
| chr1_1 | exon | 45023580 | 45023741 | 45023580 | ID=Msa0023610-mRNA-1:exon:12929;Parent=Msa0023610-mRNA-1 |
| chr1_1 | exon | 45023998 | 45024122 | 45023998 | ID=Msa0023610-mRNA-1:exon:12930;Parent=Msa0023610-mRNA-1 |
| chr1_1 | CDS | 45022468 | 45022640 | 45022468 | ID=Msa0023610-mRNA-1:cds;Parent=Msa0023610-mRNA-1 |
| chr1_1 | CDS | 45023097 | 45023193 | 45023097 | ID=Msa0023610-mRNA-1:cds;Parent=Msa0023610-mRNA-1 |
| chr1_1 | CDS | 45023313 | 45023439 | 45023313 | ID=Msa0023610-mRNA-1:cds;Parent=Msa0023610-mRNA-1 |
| chr1_1 | CDS | 45023580 | 45023741 | 45023580 | ID=Msa0023610-mRNA-1:cds;Parent=Msa0023610-mRNA-1 |
| chr1_1 | CDS | 45023998 | 45024122 | 45023998 | ID=Msa0023610-mRNA-1:cds;Parent=Msa0023610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
