Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071340 | A0A072UY95 | 77.193 | 228 | 39 | 3 | 1 | 227 | 4 | 219 | 2.50e-116 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023610 | Msa0071340 | 0.930455 | 1.596838e-93 | -8.615850e-47 |
| Msa0068630 | Msa0071340 | 0.835052 | 2.100446e-56 | -8.615850e-47 |
| Msa0071340 | Msa0153200 | 0.870156 | 1.805345e-66 | -8.615850e-47 |
| Msa0071340 | Msa0162520 | 0.800296 | 1.540721e-48 | -8.615850e-47 |
| Msa0071340 | Msa0162580 | 0.922742 | 6.619315e-89 | -8.615850e-47 |
| Msa0071340 | Msa0211680 | 0.865998 | 3.931021e-65 | -8.615850e-47 |
| Msa0071340 | Msa0280450 | 0.830612 | 2.663232e-55 | -8.615850e-47 |
| Msa0071340 | Msa0291600 | 0.830977 | 2.166332e-55 | -8.615850e-47 |
| Msa0071340 | Msa0675510 | 0.913800 | 4.039939e-84 | -8.615850e-47 |
| Msa0071340 | Msa0858360 | 0.825990 | 3.466784e-54 | -8.615850e-47 |
| Msa0071340 | Msa0912500 | 0.811117 | 8.220173e-51 | -8.615850e-47 |
| Msa0071340 | Msa1006250 | 0.812046 | 5.161922e-51 | -8.615850e-47 |
| Msa0071340 | Msa1021750 | 0.802977 | 4.341437e-49 | -8.615850e-47 |
| Msa0071340 | Msa1048540 | 0.809947 | 1.470480e-50 | -8.615850e-47 |
| Msa0071340 | Msa1182730 | 0.811699 | 6.143652e-51 | -8.615850e-47 |
| Msa0071340 | Msa1196030 | 0.802342 | 5.870515e-49 | -8.615850e-47 |
| Msa0071340 | Msa1288000 | 0.809594 | 1.751537e-50 | -8.615850e-47 |
| Msa0071340 | Msa1347360 | 0.813071 | 3.081036e-51 | -8.615850e-47 |
| Msa0071340 | Msa1463140 | 0.869584 | 2.775794e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATAGATCGTCAATATT+AGG | 0.196396 | 1_2:-43073950 | None:intergenic |
| AAATCCAAGTGAAGAAATTA+AGG | 0.250461 | 1_2:+43073480 | Msa0071340:CDS |
| TGAGTCCGAGTCTCGATTAA+AGG | 0.273789 | 1_2:-43072986 | None:intergenic |
| TCCTCTTAGGACCCTTGTTT+TGG | 0.280514 | 1_2:-43072484 | None:intergenic |
| GAACTAGCACAGCTGATTAA+TGG | 0.293544 | 1_2:+43073530 | Msa0071340:CDS |
| TATTTCAGTCTGATCCTCTT+AGG | 0.304174 | 1_2:-43072497 | None:intergenic |
| CTCCAACATGTGGTTCAGTT+TGG | 0.312413 | 1_2:+43072402 | Msa0071340:CDS |
| CCAACATCAAACGGTGCTTT+TGG | 0.325999 | 1_2:-43073240 | None:intergenic |
| GTTTGCAGTAGAGTGGTTAA+AGG | 0.332534 | 1_2:-43072432 | None:intergenic |
| TCCAACATGTGGTTCAGTTT+GGG | 0.349563 | 1_2:+43072403 | Msa0071340:CDS |
| TTGTTCTTACCTTGATCATA+TGG | 0.360817 | 1_2:-43073611 | None:intergenic |
| AGAACACAACAACATGGAAT+TGG | 0.366539 | 1_2:+43073904 | Msa0071340:CDS |
| ACATAGGTGGCGTCCACATT+TGG | 0.369942 | 1_2:-43073865 | None:intergenic |
| ATAATTTGAGTCTAAATCAT+TGG | 0.376358 | 1_2:-43073579 | None:intergenic |
| GAAATAGATCGTCAATATTA+GGG | 0.384297 | 1_2:-43073949 | None:intergenic |
| GATACAAAGGTGGTTCTGTT+TGG | 0.388046 | 1_2:-43072379 | None:intergenic |
| AACTAGCACAGCTGATTAAT+GGG | 0.393662 | 1_2:+43073531 | Msa0071340:CDS |
| GAACACAACAACATGGAATT+GGG | 0.459020 | 1_2:+43073905 | Msa0071340:CDS |
| TGCAAACTTAGGAGCCAACT+TGG | 0.462105 | 1_2:+43072448 | Msa0071340:CDS |
| GTTCCCTTAATTTCTTCACT+TGG | 0.466132 | 1_2:-43073484 | None:intergenic |
| GGAATTGGGCATGGAATGGA+TGG | 0.466811 | 1_2:+43073919 | Msa0071340:CDS |
| GTTTCAAAACCATATGATCA+AGG | 0.472120 | 1_2:+43073602 | Msa0071340:CDS |
| GTTTCGTGCTCATCCGACAT+AGG | 0.491148 | 1_2:-43073881 | None:intergenic |
| CCAAAAGCACCGTTTGATGT+TGG | 0.496047 | 1_2:+43073240 | Msa0071340:CDS |
| AATCCAAGTGAAGAAATTAA+GGG | 0.496720 | 1_2:+43073481 | Msa0071340:CDS |
| GTTGGAGCGTGTGACGTTGA+TGG | 0.506274 | 1_2:+43073258 | Msa0071340:CDS |
| GTCACTATTAAGACCCAAGT+TGG | 0.507718 | 1_2:-43072462 | None:intergenic |
| AACCACTCTACTGCAAACTT+AGG | 0.532758 | 1_2:+43072437 | Msa0071340:CDS |
| CTCCTAAGTTTGCAGTAGAG+TGG | 0.536634 | 1_2:-43072439 | None:intergenic |
| AATGTGGACGCCACCTATGT+CGG | 0.552697 | 1_2:+43073868 | Msa0071340:CDS |
| AAAGGTGGTTCTGTTTGGAA+AGG | 0.562830 | 1_2:-43072374 | None:intergenic |
| TCACACGCTCCAACATCAAA+CGG | 0.566826 | 1_2:-43073249 | None:intergenic |
| ACATGGAATTGGGCATGGAA+TGG | 0.568585 | 1_2:+43073915 | Msa0071340:CDS |
| TCTTAATAGTGACCAAAACA+AGG | 0.569518 | 1_2:+43072472 | Msa0071340:CDS |
| GAGTCTAAATCATTGGACAT+TGG | 0.575430 | 1_2:-43073572 | None:intergenic |
| GATCAAGACGGAAGGAAGAT+CGG | 0.579150 | 1_2:+43073016 | Msa0071340:CDS |
| GACTATTACAAAGCCAAATG+TGG | 0.588677 | 1_2:+43073852 | Msa0071340:CDS |
| CAACAACATGGAATTGGGCA+TGG | 0.590352 | 1_2:+43073910 | Msa0071340:CDS |
| ACCAAAACAAGGGTCCTAAG+AGG | 0.590710 | 1_2:+43072483 | Msa0071340:CDS |
| GTTCTGTTTGGAAAGGAACA+TGG | 0.591842 | 1_2:-43072367 | None:intergenic |
| TCCCAAACTGAACCACATGT+TGG | 0.599459 | 1_2:-43072404 | None:intergenic |
| CAAACTGAACCACATGTTGG+AGG | 0.601431 | 1_2:-43072401 | None:intergenic |
| CACTTAGAGAACATAATGGA+GGG | 0.621926 | 1_2:+43072335 | None:intergenic |
| CCACATGTTGGAGGATACAA+AGG | 0.621996 | 1_2:-43072392 | None:intergenic |
| AGCTCATAGATCAAGACGGA+AGG | 0.626708 | 1_2:+43073008 | Msa0071340:CDS |
| AAAGAAGCACATCTTAAAGA+CGG | 0.628544 | 1_2:+43073301 | Msa0071340:CDS |
| CGAAACAGAACACAACAACA+TGG | 0.635296 | 1_2:+43073898 | Msa0071340:CDS |
| CTACGTCGATCAACAAGCTG+AGG | 0.639200 | 1_2:+43073508 | Msa0071340:CDS |
| TCGTGCTCATCCGACATAGG+TGG | 0.642330 | 1_2:-43073878 | None:intergenic |
| CCTTTGTATCCTCCAACATG+TGG | 0.647083 | 1_2:+43072392 | Msa0071340:CDS |
| TGAAACCTTTAATCGAGACT+CGG | 0.649080 | 1_2:+43072981 | Msa0071340:CDS |
| GCAAACTTAGGAGCCAACTT+GGG | 0.651364 | 1_2:+43072449 | Msa0071340:CDS |
| ACTCAGCTCATAGATCAAGA+CGG | 0.691685 | 1_2:+43073004 | Msa0071340:CDS |
| CTTAATAGTGACCAAAACAA+GGG | 0.698882 | 1_2:+43072473 | Msa0071340:CDS |
| CATGTTGGAGGATACAAAGG+TGG | 0.702436 | 1_2:-43072389 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTCAAAAAAAAAAAAAATT+TGG | + | chr1_2:43072611-43072630 | Msa0071340:intron | 10.0% |
| !! | CTCAAAAAAAAAAAAAATTT+GGG | + | chr1_2:43072612-43072631 | Msa0071340:intron | 10.0% |
| !! | TCAAAAAAAAAAAAAATTTG+GGG | + | chr1_2:43072613-43072632 | Msa0071340:intron | 10.0% |
| !!! | TAATTATTATTTATTGGTTT+TGG | + | chr1_2:43073721-43073740 | Msa0071340:intron | 10.0% |
| !! | TCTCAAAAAAAAAAAAAATT+TGG | + | chr1_2:43072611-43072630 | Msa0071340:intron | 10.0% |
| !! | CTCAAAAAAAAAAAAAATTT+GGG | + | chr1_2:43072612-43072631 | Msa0071340:intron | 10.0% |
| !! | TCAAAAAAAAAAAAAATTTG+GGG | + | chr1_2:43072613-43072632 | Msa0071340:intron | 10.0% |
| !!! | TAATTATTATTTATTGGTTT+TGG | + | chr1_2:43073721-43073740 | Msa0071340:intron | 10.0% |
| !!! | TTTGACATTTTAAATAATTG+TGG | + | chr1_2:43072580-43072599 | Msa0071340:intron | 15.0% |
| !!! | TTTAACTTTTTTACTCAAAT+AGG | - | chr1_2:43073049-43073068 | None:intergenic | 15.0% |
| !! | TAAAAAAGTTAAAGAAATTG+AGG | + | chr1_2:43073056-43073075 | Msa0071340:CDS | 15.0% |
| !! | GTATGCTAATTATTATTTAT+TGG | + | chr1_2:43073715-43073734 | Msa0071340:intron | 15.0% |
| !!! | TTACTTTTTTAAAATGACAT+AGG | + | chr1_2:43073830-43073849 | Msa0071340:intron | 15.0% |
| !!! | TTTGACATTTTAAATAATTG+TGG | + | chr1_2:43072580-43072599 | Msa0071340:intron | 15.0% |
| !!! | TTTAACTTTTTTACTCAAAT+AGG | - | chr1_2:43073049-43073068 | None:intergenic | 15.0% |
| !! | TAAAAAAGTTAAAGAAATTG+AGG | + | chr1_2:43073056-43073075 | Msa0071340:CDS | 15.0% |
| !! | GTATGCTAATTATTATTTAT+TGG | + | chr1_2:43073715-43073734 | Msa0071340:intron | 15.0% |
| !!! | TTACTTTTTTAAAATGACAT+AGG | + | chr1_2:43073830-43073849 | Msa0071340:intron | 15.0% |
| !! | TTAAAATGTCAAATATCACA+AGG | - | chr1_2:43072573-43072592 | None:intergenic | 20.0% |
| !! | ACACACAGATATATATATTA+AGG | + | chr1_2:43072642-43072661 | Msa0071340:intron | 20.0% |
| !! | TCATCATAATCTAAATTTCA+AGG | - | chr1_2:43072881-43072900 | None:intergenic | 20.0% |
| !! | ATAATTTGAGTCTAAATCAT+TGG | - | chr1_2:43073582-43073601 | None:intergenic | 20.0% |
| !!! | CAACATATTAGTTTTTGAAA+AGG | - | chr1_2:43073681-43073700 | None:intergenic | 20.0% |
| !! | AAAAGAATTAATTAGTCACT+AGG | - | chr1_2:43073755-43073774 | None:intergenic | 20.0% |
| !! | TTAAAATGTCAAATATCACA+AGG | - | chr1_2:43072573-43072592 | None:intergenic | 20.0% |
| !! | ACACACAGATATATATATTA+AGG | + | chr1_2:43072642-43072661 | Msa0071340:intron | 20.0% |
| !! | TCATCATAATCTAAATTTCA+AGG | - | chr1_2:43072881-43072900 | None:intergenic | 20.0% |
| !! | ATAATTTGAGTCTAAATCAT+TGG | - | chr1_2:43073582-43073601 | None:intergenic | 20.0% |
| !!! | CAACATATTAGTTTTTGAAA+AGG | - | chr1_2:43073681-43073700 | None:intergenic | 20.0% |
| !! | AAAAGAATTAATTAGTCACT+AGG | - | chr1_2:43073755-43073774 | None:intergenic | 20.0% |
| ! | AGACTGAAATACATGTAATT+TGG | + | chr1_2:43072509-43072528 | Msa0071340:intron | 25.0% |
| ! | CATAGCTCAATATATTGATA+AGG | + | chr1_2:43073384-43073403 | Msa0071340:intron | 25.0% |
| ! | ACTTTCAGCTGATAATTAAT+GGG | - | chr1_2:43073450-43073469 | None:intergenic | 25.0% |
| ! | AAATCCAAGTGAAGAAATTA+AGG | + | chr1_2:43073480-43073499 | Msa0071340:CDS | 25.0% |
| ! | AATCCAAGTGAAGAAATTAA+GGG | + | chr1_2:43073481-43073500 | Msa0071340:CDS | 25.0% |
| ! | GAAATAGATCGTCAATATTA+GGG | - | chr1_2:43073952-43073971 | None:intergenic | 25.0% |
| ! | AGAAATAGATCGTCAATATT+AGG | - | chr1_2:43073953-43073972 | None:intergenic | 25.0% |
| ! | AGACTGAAATACATGTAATT+TGG | + | chr1_2:43072509-43072528 | Msa0071340:intron | 25.0% |
| ! | CATAGCTCAATATATTGATA+AGG | + | chr1_2:43073384-43073403 | Msa0071340:intron | 25.0% |
| ! | ACTTTCAGCTGATAATTAAT+GGG | - | chr1_2:43073450-43073469 | None:intergenic | 25.0% |
| ! | AAATCCAAGTGAAGAAATTA+AGG | + | chr1_2:43073480-43073499 | Msa0071340:CDS | 25.0% |
| ! | AATCCAAGTGAAGAAATTAA+GGG | + | chr1_2:43073481-43073500 | Msa0071340:CDS | 25.0% |
| ! | GAAATAGATCGTCAATATTA+GGG | - | chr1_2:43073952-43073971 | None:intergenic | 25.0% |
| ! | AGAAATAGATCGTCAATATT+AGG | - | chr1_2:43073953-43073972 | None:intergenic | 25.0% |
| TCTTAATAGTGACCAAAACA+AGG | + | chr1_2:43072472-43072491 | Msa0071340:CDS | 30.0% | |
| CTTAATAGTGACCAAAACAA+GGG | + | chr1_2:43072473-43072492 | Msa0071340:CDS | 30.0% | |
| ! | AAAGAAGCACATCTTAAAGA+CGG | + | chr1_2:43073301-43073320 | Msa0071340:CDS | 30.0% |
| CACTTTCAGCTGATAATTAA+TGG | - | chr1_2:43073451-43073470 | None:intergenic | 30.0% | |
| GTTTCAAAACCATATGATCA+AGG | + | chr1_2:43073602-43073621 | Msa0071340:CDS | 30.0% | |
| TTGTTCTTACCTTGATCATA+TGG | - | chr1_2:43073614-43073633 | None:intergenic | 30.0% | |
| TCTTAATAGTGACCAAAACA+AGG | + | chr1_2:43072472-43072491 | Msa0071340:CDS | 30.0% | |
| CTTAATAGTGACCAAAACAA+GGG | + | chr1_2:43072473-43072492 | Msa0071340:CDS | 30.0% | |
| ! | AAAGAAGCACATCTTAAAGA+CGG | + | chr1_2:43073301-43073320 | Msa0071340:CDS | 30.0% |
| CACTTTCAGCTGATAATTAA+TGG | - | chr1_2:43073451-43073470 | None:intergenic | 30.0% | |
| GTTTCAAAACCATATGATCA+AGG | + | chr1_2:43073602-43073621 | Msa0071340:CDS | 30.0% | |
| TTGTTCTTACCTTGATCATA+TGG | - | chr1_2:43073614-43073633 | None:intergenic | 30.0% | |
| TATTTCAGTCTGATCCTCTT+AGG | - | chr1_2:43072500-43072519 | None:intergenic | 35.0% | |
| TGAAACCTTTAATCGAGACT+CGG | + | chr1_2:43072981-43073000 | Msa0071340:CDS | 35.0% | |
| CGCTCATCATAAATATATGC+AGG | + | chr1_2:43073174-43073193 | Msa0071340:intron | 35.0% | |
| GTTCCCTTAATTTCTTCACT+TGG | - | chr1_2:43073487-43073506 | None:intergenic | 35.0% | |
| AACTAGCACAGCTGATTAAT+GGG | + | chr1_2:43073531-43073550 | Msa0071340:CDS | 35.0% | |
| GAGTCTAAATCATTGGACAT+TGG | - | chr1_2:43073575-43073594 | None:intergenic | 35.0% | |
| GACTATTACAAAGCCAAATG+TGG | + | chr1_2:43073852-43073871 | Msa0071340:CDS | 35.0% | |
| AGAACACAACAACATGGAAT+TGG | + | chr1_2:43073904-43073923 | Msa0071340:CDS | 35.0% | |
| GAACACAACAACATGGAATT+GGG | + | chr1_2:43073905-43073924 | Msa0071340:CDS | 35.0% | |
| TATTTCAGTCTGATCCTCTT+AGG | - | chr1_2:43072500-43072519 | None:intergenic | 35.0% | |
| TGAAACCTTTAATCGAGACT+CGG | + | chr1_2:43072981-43073000 | Msa0071340:CDS | 35.0% | |
| CGCTCATCATAAATATATGC+AGG | + | chr1_2:43073174-43073193 | Msa0071340:intron | 35.0% | |
| GTTCCCTTAATTTCTTCACT+TGG | - | chr1_2:43073487-43073506 | None:intergenic | 35.0% | |
| AACTAGCACAGCTGATTAAT+GGG | + | chr1_2:43073531-43073550 | Msa0071340:CDS | 35.0% | |
| GAGTCTAAATCATTGGACAT+TGG | - | chr1_2:43073575-43073594 | None:intergenic | 35.0% | |
| GACTATTACAAAGCCAAATG+TGG | + | chr1_2:43073852-43073871 | Msa0071340:CDS | 35.0% | |
| AGAACACAACAACATGGAAT+TGG | + | chr1_2:43073904-43073923 | Msa0071340:CDS | 35.0% | |
| GAACACAACAACATGGAATT+GGG | + | chr1_2:43073905-43073924 | Msa0071340:CDS | 35.0% | |
| GTTCTGTTTGGAAAGGAACA+TGG | - | chr1_2:43072370-43072389 | None:intergenic | 40.0% | |
| ! | AAAGGTGGTTCTGTTTGGAA+AGG | - | chr1_2:43072377-43072396 | None:intergenic | 40.0% |
| ! | GATACAAAGGTGGTTCTGTT+TGG | - | chr1_2:43072382-43072401 | None:intergenic | 40.0% |
| TCCAACATGTGGTTCAGTTT+GGG | + | chr1_2:43072403-43072422 | Msa0071340:CDS | 40.0% | |
| GTTTGCAGTAGAGTGGTTAA+AGG | - | chr1_2:43072435-43072454 | None:intergenic | 40.0% | |
| AACCACTCTACTGCAAACTT+AGG | + | chr1_2:43072437-43072456 | Msa0071340:CDS | 40.0% | |
| GTCACTATTAAGACCCAAGT+TGG | - | chr1_2:43072465-43072484 | None:intergenic | 40.0% | |
| CATGCATTCACCAAAGTCAA+TGG | + | chr1_2:43072786-43072805 | Msa0071340:intron | 40.0% | |
| ACACATGCATTATGAGATGC+TGG | - | chr1_2:43072921-43072940 | None:intergenic | 40.0% | |
| ACTCAGCTCATAGATCAAGA+CGG | + | chr1_2:43073004-43073023 | Msa0071340:CDS | 40.0% | |
| GAACTAGCACAGCTGATTAA+TGG | + | chr1_2:43073530-43073549 | Msa0071340:CDS | 40.0% | |
| CGAAACAGAACACAACAACA+TGG | + | chr1_2:43073898-43073917 | Msa0071340:CDS | 40.0% | |
| GTTCTGTTTGGAAAGGAACA+TGG | - | chr1_2:43072370-43072389 | None:intergenic | 40.0% | |
| ! | AAAGGTGGTTCTGTTTGGAA+AGG | - | chr1_2:43072377-43072396 | None:intergenic | 40.0% |
| ! | GATACAAAGGTGGTTCTGTT+TGG | - | chr1_2:43072382-43072401 | None:intergenic | 40.0% |
| TCCAACATGTGGTTCAGTTT+GGG | + | chr1_2:43072403-43072422 | Msa0071340:CDS | 40.0% | |
| GTTTGCAGTAGAGTGGTTAA+AGG | - | chr1_2:43072435-43072454 | None:intergenic | 40.0% | |
| AACCACTCTACTGCAAACTT+AGG | + | chr1_2:43072437-43072456 | Msa0071340:CDS | 40.0% | |
| GTCACTATTAAGACCCAAGT+TGG | - | chr1_2:43072465-43072484 | None:intergenic | 40.0% | |
| CATGCATTCACCAAAGTCAA+TGG | + | chr1_2:43072786-43072805 | Msa0071340:intron | 40.0% | |
| ACACATGCATTATGAGATGC+TGG | - | chr1_2:43072921-43072940 | None:intergenic | 40.0% | |
| ACTCAGCTCATAGATCAAGA+CGG | + | chr1_2:43073004-43073023 | Msa0071340:CDS | 40.0% | |
| GAACTAGCACAGCTGATTAA+TGG | + | chr1_2:43073530-43073549 | Msa0071340:CDS | 40.0% | |
| CGAAACAGAACACAACAACA+TGG | + | chr1_2:43073898-43073917 | Msa0071340:CDS | 40.0% | |
| CATGTTGGAGGATACAAAGG+TGG | - | chr1_2:43072392-43072411 | None:intergenic | 45.0% | |
| CCACATGTTGGAGGATACAA+AGG | - | chr1_2:43072395-43072414 | None:intergenic | 45.0% | |
| CCTTTGTATCCTCCAACATG+TGG | + | chr1_2:43072392-43072411 | Msa0071340:CDS | 45.0% | |
| CAAACTGAACCACATGTTGG+AGG | - | chr1_2:43072404-43072423 | None:intergenic | 45.0% | |
| CTCCAACATGTGGTTCAGTT+TGG | + | chr1_2:43072402-43072421 | Msa0071340:CDS | 45.0% | |
| TCCCAAACTGAACCACATGT+TGG | - | chr1_2:43072407-43072426 | None:intergenic | 45.0% | |
| CTCCTAAGTTTGCAGTAGAG+TGG | - | chr1_2:43072442-43072461 | None:intergenic | 45.0% | |
| TGCAAACTTAGGAGCCAACT+TGG | + | chr1_2:43072448-43072467 | Msa0071340:CDS | 45.0% | |
| GCAAACTTAGGAGCCAACTT+GGG | + | chr1_2:43072449-43072468 | Msa0071340:CDS | 45.0% | |
| ACCAAAACAAGGGTCCTAAG+AGG | + | chr1_2:43072483-43072502 | Msa0071340:CDS | 45.0% | |
| !! | TCCTCTTAGGACCCTTGTTT+TGG | - | chr1_2:43072487-43072506 | None:intergenic | 45.0% |
| !! | CGATCTACGACCATTGACTT+TGG | - | chr1_2:43072799-43072818 | None:intergenic | 45.0% |
| GGTCGTAGATCGACATCAAA+CGG | + | chr1_2:43072807-43072826 | Msa0071340:intron | 45.0% | |
| TGAGTCCGAGTCTCGATTAA+AGG | - | chr1_2:43072989-43073008 | None:intergenic | 45.0% | |
| AGCTCATAGATCAAGACGGA+AGG | + | chr1_2:43073008-43073027 | Msa0071340:CDS | 45.0% | |
| GATCAAGACGGAAGGAAGAT+CGG | + | chr1_2:43073016-43073035 | Msa0071340:CDS | 45.0% | |
| ! | CCAACATCAAACGGTGCTTT+TGG | - | chr1_2:43073243-43073262 | None:intergenic | 45.0% |
| !! | CCAAAAGCACCGTTTGATGT+TGG | + | chr1_2:43073240-43073259 | Msa0071340:CDS | 45.0% |
| TCACACGCTCCAACATCAAA+CGG | - | chr1_2:43073252-43073271 | None:intergenic | 45.0% | |
| CAACAACATGGAATTGGGCA+TGG | + | chr1_2:43073910-43073929 | Msa0071340:CDS | 45.0% | |
| ACATGGAATTGGGCATGGAA+TGG | + | chr1_2:43073915-43073934 | Msa0071340:CDS | 45.0% | |
| CATGTTGGAGGATACAAAGG+TGG | - | chr1_2:43072392-43072411 | None:intergenic | 45.0% | |
| CCACATGTTGGAGGATACAA+AGG | - | chr1_2:43072395-43072414 | None:intergenic | 45.0% | |
| CCTTTGTATCCTCCAACATG+TGG | + | chr1_2:43072392-43072411 | Msa0071340:CDS | 45.0% | |
| CAAACTGAACCACATGTTGG+AGG | - | chr1_2:43072404-43072423 | None:intergenic | 45.0% | |
| CTCCAACATGTGGTTCAGTT+TGG | + | chr1_2:43072402-43072421 | Msa0071340:CDS | 45.0% | |
| TCCCAAACTGAACCACATGT+TGG | - | chr1_2:43072407-43072426 | None:intergenic | 45.0% | |
| CTCCTAAGTTTGCAGTAGAG+TGG | - | chr1_2:43072442-43072461 | None:intergenic | 45.0% | |
| TGCAAACTTAGGAGCCAACT+TGG | + | chr1_2:43072448-43072467 | Msa0071340:CDS | 45.0% | |
| GCAAACTTAGGAGCCAACTT+GGG | + | chr1_2:43072449-43072468 | Msa0071340:CDS | 45.0% | |
| ACCAAAACAAGGGTCCTAAG+AGG | + | chr1_2:43072483-43072502 | Msa0071340:CDS | 45.0% | |
| !! | TCCTCTTAGGACCCTTGTTT+TGG | - | chr1_2:43072487-43072506 | None:intergenic | 45.0% |
| !! | CGATCTACGACCATTGACTT+TGG | - | chr1_2:43072799-43072818 | None:intergenic | 45.0% |
| GGTCGTAGATCGACATCAAA+CGG | + | chr1_2:43072807-43072826 | Msa0071340:intron | 45.0% | |
| TGAGTCCGAGTCTCGATTAA+AGG | - | chr1_2:43072989-43073008 | None:intergenic | 45.0% | |
| AGCTCATAGATCAAGACGGA+AGG | + | chr1_2:43073008-43073027 | Msa0071340:CDS | 45.0% | |
| GATCAAGACGGAAGGAAGAT+CGG | + | chr1_2:43073016-43073035 | Msa0071340:CDS | 45.0% | |
| ! | CCAACATCAAACGGTGCTTT+TGG | - | chr1_2:43073243-43073262 | None:intergenic | 45.0% |
| !! | CCAAAAGCACCGTTTGATGT+TGG | + | chr1_2:43073240-43073259 | Msa0071340:CDS | 45.0% |
| TCACACGCTCCAACATCAAA+CGG | - | chr1_2:43073252-43073271 | None:intergenic | 45.0% | |
| CAACAACATGGAATTGGGCA+TGG | + | chr1_2:43073910-43073929 | Msa0071340:CDS | 45.0% | |
| ACATGGAATTGGGCATGGAA+TGG | + | chr1_2:43073915-43073934 | Msa0071340:CDS | 45.0% | |
| CTACGTCGATCAACAAGCTG+AGG | + | chr1_2:43073508-43073527 | Msa0071340:CDS | 50.0% | |
| ACATAGGTGGCGTCCACATT+TGG | - | chr1_2:43073868-43073887 | None:intergenic | 50.0% | |
| AATGTGGACGCCACCTATGT+CGG | + | chr1_2:43073868-43073887 | Msa0071340:CDS | 50.0% | |
| GTTTCGTGCTCATCCGACAT+AGG | - | chr1_2:43073884-43073903 | None:intergenic | 50.0% | |
| GGAATTGGGCATGGAATGGA+TGG | + | chr1_2:43073919-43073938 | Msa0071340:CDS | 50.0% | |
| CTACGTCGATCAACAAGCTG+AGG | + | chr1_2:43073508-43073527 | Msa0071340:CDS | 50.0% | |
| ACATAGGTGGCGTCCACATT+TGG | - | chr1_2:43073868-43073887 | None:intergenic | 50.0% | |
| AATGTGGACGCCACCTATGT+CGG | + | chr1_2:43073868-43073887 | Msa0071340:CDS | 50.0% | |
| GTTTCGTGCTCATCCGACAT+AGG | - | chr1_2:43073884-43073903 | None:intergenic | 50.0% | |
| GGAATTGGGCATGGAATGGA+TGG | + | chr1_2:43073919-43073938 | Msa0071340:CDS | 50.0% | |
| GTTGGAGCGTGTGACGTTGA+TGG | + | chr1_2:43073258-43073277 | Msa0071340:CDS | 55.0% | |
| TCGTGCTCATCCGACATAGG+TGG | - | chr1_2:43073881-43073900 | None:intergenic | 55.0% | |
| GTTGGAGCGTGTGACGTTGA+TGG | + | chr1_2:43073258-43073277 | Msa0071340:CDS | 55.0% | |
| TCGTGCTCATCCGACATAGG+TGG | - | chr1_2:43073881-43073900 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 43072350 | 43073976 | 43072350 | ID=Msa0071340;Name=Msa0071340 |
| chr1_2 | mRNA | 43072350 | 43073976 | 43072350 | ID=Msa0071340-mRNA-1;Parent=Msa0071340;Name=Msa0071340-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|5|0|227 |
| chr1_2 | exon | 43072350 | 43072522 | 43072350 | ID=Msa0071340-mRNA-1:exon:13016;Parent=Msa0071340-mRNA-1 |
| chr1_2 | exon | 43072981 | 43073077 | 43072981 | ID=Msa0071340-mRNA-1:exon:13017;Parent=Msa0071340-mRNA-1 |
| chr1_2 | exon | 43073196 | 43073322 | 43073196 | ID=Msa0071340-mRNA-1:exon:13018;Parent=Msa0071340-mRNA-1 |
| chr1_2 | exon | 43073462 | 43073623 | 43073462 | ID=Msa0071340-mRNA-1:exon:13019;Parent=Msa0071340-mRNA-1 |
| chr1_2 | exon | 43073852 | 43073976 | 43073852 | ID=Msa0071340-mRNA-1:exon:13020;Parent=Msa0071340-mRNA-1 |
| chr1_2 | CDS | 43072350 | 43072522 | 43072350 | ID=Msa0071340-mRNA-1:cds;Parent=Msa0071340-mRNA-1 |
| chr1_2 | CDS | 43072981 | 43073077 | 43072981 | ID=Msa0071340-mRNA-1:cds;Parent=Msa0071340-mRNA-1 |
| chr1_2 | CDS | 43073196 | 43073322 | 43073196 | ID=Msa0071340-mRNA-1:cds;Parent=Msa0071340-mRNA-1 |
| chr1_2 | CDS | 43073462 | 43073623 | 43073462 | ID=Msa0071340-mRNA-1:cds;Parent=Msa0071340-mRNA-1 |
| chr1_2 | CDS | 43073852 | 43073976 | 43073852 | ID=Msa0071340-mRNA-1:cds;Parent=Msa0071340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
