Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163110 | sp|Q9SVD0|SMXL3_ARATH | 52.989 | 853 | 310 | 23 | 1 | 804 | 1 | 811 | 0.0 | 783 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163110 | A0A072VJF0 | 96.159 | 807 | 31 | 0 | 1 | 807 | 1 | 807 | 0.0 | 1615 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002580 | Msa0163110 | 0.839307 | 1.714115e-57 | -8.615850e-47 |
| Msa0042640 | Msa0163110 | 0.823876 | 1.094081e-53 | -8.615850e-47 |
| Msa0163110 | Msa0230800 | 0.815491 | 8.998149e-52 | -8.615850e-47 |
| Msa0163110 | Msa0230870 | 0.823467 | 1.363817e-53 | -8.615850e-47 |
| Msa0163110 | Msa0436910 | 0.846425 | 2.190346e-59 | -8.615850e-47 |
| Msa0163110 | Msa0519750 | 0.800357 | 1.496954e-48 | -8.615850e-47 |
| Msa0163110 | Msa0528570 | 0.823032 | 1.723041e-53 | -8.615850e-47 |
| Msa0163110 | Msa0701720 | 0.820110 | 8.153364e-53 | -8.615850e-47 |
| Msa0163110 | Msa0829300 | 0.802398 | 5.716249e-49 | -8.615850e-47 |
| Msa0163110 | Msa1265650 | 0.838500 | 2.771494e-57 | -8.615850e-47 |
| Msa0163110 | Msa1303560 | 0.822379 | 2.444895e-53 | -8.615850e-47 |
| Msa0163110 | Msa1303650 | 0.824991 | 5.979222e-54 | -8.615850e-47 |
| Msa0163110 | Msa1372040 | 0.816606 | 5.069840e-52 | -8.615850e-47 |
| Msa0163110 | Msa1415540 | 0.819256 | 1.277470e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163110 | MtrunA17_Chr1g0177421 | 96.159 | 807 | 31 | 0 | 1 | 807 | 1 | 807 | 0.0 | 1615 |
| Msa0163110 | MtrunA17_Chr1g0197121 | 50.874 | 515 | 212 | 12 | 1 | 488 | 1 | 501 | 8.61e-155 | 473 |
| Msa0163110 | MtrunA17_Chr1g0197121 | 44.776 | 268 | 119 | 9 | 548 | 803 | 597 | 847 | 5.49e-51 | 192 |
| Msa0163110 | MtrunA17_Chr4g0073021 | 31.958 | 848 | 424 | 26 | 1 | 731 | 1 | 812 | 8.11e-101 | 335 |
| Msa0163110 | MtrunA17_Chr2g0298801 | 34.336 | 798 | 394 | 31 | 1 | 708 | 1 | 758 | 1.22e-99 | 332 |
| Msa0163110 | MtrunA17_Chr4g0071701 | 63.102 | 187 | 49 | 5 | 1 | 177 | 1 | 177 | 1.56e-59 | 217 |
| Msa0163110 | MtrunA17_Chr5g0430201 | 29.808 | 416 | 222 | 13 | 1 | 385 | 1 | 377 | 1.04e-28 | 124 |
| Msa0163110 | MtrunA17_Chr5g0430201 | 30.636 | 173 | 114 | 3 | 561 | 731 | 677 | 845 | 2.67e-14 | 77.4 |
| Msa0163110 | MtrunA17_Chr3g0113631 | 29.412 | 408 | 227 | 16 | 1 | 380 | 1 | 375 | 4.32e-28 | 121 |
| Msa0163110 | MtrunA17_Chr3g0113631 | 29.714 | 175 | 109 | 4 | 561 | 735 | 686 | 846 | 2.90e-14 | 77.4 |
| Msa0163110 | MtrunA17_Chr3g0105051 | 25.468 | 534 | 312 | 19 | 1 | 478 | 1 | 504 | 1.29e-27 | 120 |
| Msa0163110 | MtrunA17_Chr3g0105051 | 28.033 | 239 | 160 | 5 | 501 | 735 | 613 | 843 | 1.83e-14 | 77.8 |
| Msa0163110 | MtrunA17_Chr4g0061371 | 28.239 | 301 | 182 | 11 | 26 | 320 | 20 | 292 | 7.39e-21 | 98.6 |
| Msa0163110 | MtrunA17_Chr7g0225161 | 25.086 | 291 | 185 | 9 | 23 | 308 | 17 | 279 | 3.92e-15 | 80.1 |
| Msa0163110 | MtrunA17_Chr7g0235711 | 29.114 | 158 | 98 | 3 | 560 | 717 | 90 | 233 | 4.09e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163110 | AT3G52490.1 | 52.989 | 853 | 310 | 23 | 1 | 804 | 1 | 811 | 0.0 | 783 |
| Msa0163110 | AT4G29920.2 | 33.709 | 798 | 395 | 29 | 1 | 697 | 1 | 765 | 6.42e-97 | 325 |
| Msa0163110 | AT4G29920.1 | 33.584 | 798 | 393 | 30 | 1 | 697 | 1 | 762 | 1.08e-94 | 318 |
| Msa0163110 | AT5G57130.1 | 32.014 | 834 | 377 | 28 | 1 | 697 | 1 | 781 | 1.17e-94 | 318 |
| Msa0163110 | AT5G57710.1 | 30.587 | 886 | 460 | 29 | 1 | 780 | 1 | 837 | 3.31e-94 | 317 |
| Msa0163110 | AT4G30350.1 | 32.970 | 825 | 403 | 20 | 1 | 765 | 1 | 735 | 1.86e-92 | 311 |
| Msa0163110 | AT1G07200.2 | 24.608 | 829 | 467 | 28 | 1 | 731 | 1 | 769 | 1.22e-49 | 189 |
| Msa0163110 | AT2G29970.1 | 24.910 | 835 | 466 | 28 | 1 | 729 | 1 | 780 | 2.60e-49 | 188 |
| Msa0163110 | AT2G40130.2 | 24.621 | 792 | 439 | 22 | 1 | 734 | 1 | 692 | 1.02e-46 | 180 |
| Msa0163110 | AT2G40130.1 | 24.590 | 793 | 435 | 23 | 1 | 734 | 1 | 689 | 1.07e-45 | 177 |
| Msa0163110 | AT1G74310.2 | 28.302 | 318 | 188 | 11 | 12 | 320 | 6 | 292 | 2.69e-19 | 93.6 |
| Msa0163110 | AT1G74310.1 | 28.302 | 318 | 188 | 11 | 12 | 320 | 6 | 292 | 2.70e-19 | 94.0 |
| Msa0163110 | AT1G07200.1 | 22.674 | 172 | 115 | 3 | 560 | 731 | 59 | 212 | 6.30e-11 | 65.9 |
Find 123 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTTCTCTTTCTAATTT+TGG | 0.109844 | 1_4:-40918901 | Msa0163110:CDS |
| AAAGATTCTCTTCAAATTTC+AGG | 0.131153 | 1_4:-40916275 | Msa0163110:CDS |
| GGATATTATGTACTTCTTTA+AGG | 0.140522 | 1_4:+40919730 | None:intergenic |
| CCACTAGAAGTGGTTGAATT+AGG | 0.145777 | 1_4:+40917063 | None:intergenic |
| AATTGGTATTGGATCCAATT+AGG | 0.147815 | 1_4:-40919089 | Msa0163110:CDS |
| ATCCATCACTTGAGACTATT+TGG | 0.173857 | 1_4:-40918603 | Msa0163110:CDS |
| GATAATGGAGATTGGAAAAT+TGG | 0.186851 | 1_4:-40918707 | Msa0163110:CDS |
| GATAGATTGGTGGATGAAAT+TGG | 0.207217 | 1_4:-40916319 | Msa0163110:CDS |
| TCTTGAGATGATCTTTGTTT+TGG | 0.222106 | 1_4:+40916442 | None:intergenic |
| ATGCAATGCTTTGGAGAAAA+AGG | 0.237090 | 1_4:-40916977 | Msa0163110:CDS |
| TGTTGAACAAGCTGTTTCTT+TGG | 0.237988 | 1_4:-40919199 | Msa0163110:CDS |
| TTGGAGAATGTGGAAAATTT+TGG | 0.242411 | 1_4:-40918675 | Msa0163110:CDS |
| GACAAGTTCTTATGTTTCTT+TGG | 0.259034 | 1_4:-40916380 | Msa0163110:CDS |
| TTGATATCACCAACCCTAAT+TGG | 0.269320 | 1_4:+40919075 | None:intergenic |
| AGTTTCCCGTTCTCATCTTT+AGG | 0.285635 | 1_4:+40919709 | None:intergenic |
| TGTATCTTGGAGATCTAAAA+TGG | 0.296734 | 1_4:-40918792 | Msa0163110:CDS |
| TCCTTTGGATCACATGATAA+TGG | 0.304776 | 1_4:-40918722 | Msa0163110:CDS |
| TGTACTTATATTGAAAGATT+TGG | 0.311616 | 1_4:-40916664 | Msa0163110:CDS |
| ACTCTTGAAGGTGTAGTTAA+AGG | 0.320099 | 1_4:-40918985 | Msa0163110:CDS |
| CACTAGAAGTGGTTGAATTA+GGG | 0.324421 | 1_4:+40917064 | None:intergenic |
| ATTGGTATTGGATCCAATTA+GGG | 0.325681 | 1_4:-40919088 | Msa0163110:CDS |
| AGAAAGAGTATTGTTGTTGT+TGG | 0.330213 | 1_4:-40919021 | Msa0163110:CDS |
| GACTTTCCACTCATAGTAGA+AGG | 0.335640 | 1_4:+40919171 | None:intergenic |
| ATCACGTCTTTGCATTTCTT+AGG | 0.344744 | 1_4:-40916168 | Msa0163110:three_prime_UTR |
| TTCTAGTGGCCTTGTGGAAA+TGG | 0.347272 | 1_4:-40917049 | Msa0163110:CDS |
| TTTCACAAATTGGTTTCAAA+AGG | 0.364259 | 1_4:-40916576 | Msa0163110:CDS |
| TGATATTAATGTTGCTACTT+TGG | 0.366558 | 1_4:-40916407 | Msa0163110:CDS |
| AGTAGGGTTATGAGAGAAGC+AGG | 0.368227 | 1_4:-40919249 | Msa0163110:CDS |
| TATTGAGAAAGGAAAAGTTT+TGG | 0.368780 | 1_4:-40916551 | Msa0163110:CDS |
| GTAATGGAAAAGTTTGATAA+AGG | 0.370950 | 1_4:-40918961 | Msa0163110:CDS |
| TATTGAAATGAAATTATTGT+AGG | 0.371269 | 1_4:+40916765 | None:intergenic |
| CATGGCCACGACGCTTTGCT+AGG | 0.373812 | 1_4:+40919628 | None:intergenic |
| TAGAGGTTATTATTGTCCTT+TGG | 0.375466 | 1_4:-40918737 | Msa0163110:CDS |
| CAATGTCAAGTAATCCTCAT+AGG | 0.380093 | 1_4:-40916636 | Msa0163110:CDS |
| GGAAAATTGGTTAATGATGT+TGG | 0.381813 | 1_4:-40918694 | Msa0163110:CDS |
| ATATCAACTATCTTTGTTCC+AGG | 0.387365 | 1_4:-40916088 | Msa0163110:three_prime_UTR |
| ACTAAAGCATTTGAGATAGA+AGG | 0.391727 | 1_4:+40919399 | None:intergenic |
| TAGATGACCCTAGTGTTAGT+AGG | 0.393635 | 1_4:-40919266 | Msa0163110:CDS |
| TCGCTTTGTGACACATTGTT+AGG | 0.398289 | 1_4:+40917144 | None:intergenic |
| AAGAAACAAGGGATGATTAG+AGG | 0.404423 | 1_4:-40918754 | Msa0163110:CDS |
| CGTTTGCAGCTTCTGTGGTT+AGG | 0.405394 | 1_4:+40919670 | None:intergenic |
| AAAACCGTACTTGCAATTTC+CGG | 0.419364 | 1_4:+40916931 | None:intergenic |
| GATCACATGATAATGGAGAT+TGG | 0.425283 | 1_4:-40918715 | Msa0163110:CDS |
| TCACCTTCTTCATCTACATC+AGG | 0.432036 | 1_4:-40917192 | Msa0163110:CDS |
| TAAAATTCTTACATTATCTT+CGG | 0.433663 | 1_4:-40917217 | Msa0163110:CDS |
| GTGGTTGAATTAGGGTTTGA+AGG | 0.434841 | 1_4:+40917072 | None:intergenic |
| CTTCCAGCAGGTATAGTGAT+AGG | 0.437040 | 1_4:+40918571 | None:intergenic |
| TTCAAAAGGGCTATTGAGAA+AGG | 0.457640 | 1_4:-40916562 | Msa0163110:CDS |
| GTTAATGATGTTGGAGAATG+TGG | 0.457785 | 1_4:-40918685 | Msa0163110:CDS |
| TACATAATAATAAAATTAAG+AGG | 0.459644 | 1_4:+40916132 | None:intergenic |
| AGGAATTGCTTACAATGATC+AGG | 0.460510 | 1_4:-40917577 | Msa0163110:intron |
| GTAACTACATGTATATTAGA+AGG | 0.464949 | 1_4:-40916112 | Msa0163110:three_prime_UTR |
| TTTGCAATGCCGATCCGGAT+TGG | 0.473626 | 1_4:-40916911 | Msa0163110:CDS |
| TTCACAAATTGGTTTCAAAA+GGG | 0.476637 | 1_4:-40916575 | Msa0163110:CDS |
| GAGAACTCTATGCAATGCTT+TGG | 0.480858 | 1_4:-40916986 | Msa0163110:CDS |
| GATTCAAATGGTGAAGAGGT+TGG | 0.485511 | 1_4:-40916529 | Msa0163110:CDS |
| TTACGATGAGGACGATAGAT+TGG | 0.485658 | 1_4:-40916332 | Msa0163110:CDS |
| TCTTTCAAGGGTAGAAATTG+AGG | 0.485734 | 1_4:-40918875 | Msa0163110:CDS |
| GAAGAGAATCTTTCTGTCTA+CGG | 0.488889 | 1_4:+40916285 | None:intergenic |
| ATAGATTGGTGGATGAAATT+GGG | 0.489224 | 1_4:-40916318 | Msa0163110:CDS |
| GAATGTGTAGCTACTCTTGA+AGG | 0.491325 | 1_4:-40918997 | Msa0163110:CDS |
| GTTTGAAGGTTCATTTGACT+TGG | 0.491779 | 1_4:+40917086 | None:intergenic |
| AACTTGTAATAGCCCTATGT+TGG | 0.491983 | 1_4:-40919454 | Msa0163110:CDS |
| AGAAACCTAGCTAGAAAAGA+AGG | 0.495369 | 1_4:+40916210 | None:intergenic |
| AATATCCTAAAGATGAGAAC+GGG | 0.496661 | 1_4:-40919714 | Msa0163110:exon |
| AATACCGGAAATTGCAAGTA+CGG | 0.498764 | 1_4:-40916935 | Msa0163110:CDS |
| AGATGACCCTAGTGTTAGTA+GGG | 0.499585 | 1_4:-40919265 | Msa0163110:CDS |
| TCTAAAGCCTTGCATTGAAG+AGG | 0.499748 | 1_4:+40919516 | None:intergenic |
| GAAAATCCTTCTACTATGAG+TGG | 0.499956 | 1_4:-40919177 | Msa0163110:CDS |
| ACTTGTAATAGCCCTATGTT+GGG | 0.502989 | 1_4:-40919453 | Msa0163110:CDS |
| AGAAACAGCTTGTTCAACAT+TGG | 0.507972 | 1_4:+40919203 | None:intergenic |
| TCAATCTTCACCGTCAAAAG+TGG | 0.509178 | 1_4:+40919315 | None:intergenic |
| TTGTATTGTTGTAGCCATGC+AGG | 0.511455 | 1_4:+40917612 | None:intergenic |
| AGCTGTTCTTAATAATCCAT+TGG | 0.512465 | 1_4:+40919560 | None:intergenic |
| CTCAATCTCAAGCTTCCAGC+AGG | 0.514563 | 1_4:+40918559 | None:intergenic |
| CTCATAACCCTACTAACACT+AGG | 0.515656 | 1_4:+40919258 | None:intergenic |
| AGGATGTTGTTGCTGCTCAT+AGG | 0.516274 | 1_4:+40917164 | None:intergenic |
| TTTGAATATTTCTATTGATG+AGG | 0.522031 | 1_4:-40916356 | Msa0163110:CDS |
| TGGTTATTGCATGAAGGAGT+AGG | 0.522076 | 1_4:-40917699 | Msa0163110:CDS |
| TTGCTTCCAAATCAACACCT+TGG | 0.526981 | 1_4:+40916830 | None:intergenic |
| TATCCTATCACTATACCTGC+TGG | 0.527341 | 1_4:-40918574 | Msa0163110:CDS |
| TTCCACAAGGCCACTAGAAG+TGG | 0.534075 | 1_4:+40917053 | None:intergenic |
| AGGTGTAGTTAAAGGAGTAA+TGG | 0.536255 | 1_4:-40918977 | Msa0163110:CDS |
| GTAGGGTTATGAGAGAAGCA+GGG | 0.541087 | 1_4:-40919248 | Msa0163110:CDS |
| TTTGATTATAAGAAGAAACA+AGG | 0.542023 | 1_4:-40918766 | Msa0163110:CDS |
| TTTGGATTCAAATGGTGAAG+AGG | 0.542273 | 1_4:-40916533 | Msa0163110:CDS |
| TACTATGAGTGGAAAGTCAA+AGG | 0.546131 | 1_4:-40919166 | Msa0163110:CDS |
| AAATAGCAAAAGAATTAGCT+AGG | 0.548699 | 1_4:-40916801 | Msa0163110:CDS |
| AACCACTTCTAGTGGCCTTG+TGG | 0.549564 | 1_4:-40917055 | Msa0163110:CDS |
| AAACCTGATGTAGATGAAGA+AGG | 0.555376 | 1_4:+40917189 | None:intergenic |
| TATTACGTTTGCAGCTTCTG+TGG | 0.557509 | 1_4:+40919665 | None:intergenic |
| GAATGATGAGAACCCAACAT+AGG | 0.558077 | 1_4:+40919441 | None:intergenic |
| AATGATGAGAACCCAACATA+GGG | 0.558354 | 1_4:+40919442 | None:intergenic |
| CTCCCACCCTCTTCAATGCA+AGG | 0.558970 | 1_4:-40919523 | Msa0163110:CDS |
| GTATTGGATCCAATTAGGGT+TGG | 0.560835 | 1_4:-40919084 | Msa0163110:CDS |
| TCCATTATCATGTGATCCAA+AGG | 0.564507 | 1_4:+40918721 | None:intergenic |
| TTCCAAATAGTCTCAAGTGA+TGG | 0.566508 | 1_4:+40918601 | None:intergenic |
| CGATGAGGACGATAGATTGG+TGG | 0.575559 | 1_4:-40916329 | Msa0163110:CDS |
| ACAAGCTGGTTATTGCATGA+AGG | 0.578179 | 1_4:-40917705 | Msa0163110:CDS |
| GATTGAGTCTCATCACTGAC+AGG | 0.581797 | 1_4:-40918543 | Msa0163110:intron |
| AAGCTGAGAATAAAACAAGC+TGG | 0.582217 | 1_4:-40917719 | Msa0163110:CDS |
| AATGTCAAGTAATCCTCATA+GGG | 0.585696 | 1_4:-40916635 | Msa0163110:CDS |
| TTGATTATAAGAAGAAACAA+GGG | 0.590629 | 1_4:-40918765 | Msa0163110:CDS |
| ATGGCCACGACGCTTTGCTA+GGG | 0.591505 | 1_4:+40919629 | None:intergenic |
| TAATATCCTAAAGATGAGAA+CGG | 0.592018 | 1_4:-40919715 | Msa0163110:exon |
| AGCTTGAGCACGCTTAAAAG+CGG | 0.594692 | 1_4:+40919374 | None:intergenic |
| AGCCTTGCATTGAAGAGGGT+GGG | 0.600734 | 1_4:+40919521 | None:intergenic |
| CTAAAGCCTTGCATTGAAGA+GGG | 0.601547 | 1_4:+40919517 | None:intergenic |
| GGAAACTGTTCTTTGCAACA+AGG | 0.603124 | 1_4:-40919693 | Msa0163110:CDS |
| AAGCCTTGCATTGAAGAGGG+TGG | 0.607194 | 1_4:+40919520 | None:intergenic |
| GGGCTATTACAAGTTGTCGC+TGG | 0.611230 | 1_4:+40919462 | None:intergenic |
| CAAGTTCAAGTCTTCCTGCA+TGG | 0.612792 | 1_4:-40917626 | Msa0163110:CDS |
| ACTATGCTTAGTGTTACCAA+TGG | 0.614381 | 1_4:-40919576 | Msa0163110:CDS |
| ATAGTGTTTGCAACATGAAG+TGG | 0.629684 | 1_4:+40919594 | None:intergenic |
| TCATAACCCTACTAACACTA+GGG | 0.629834 | 1_4:+40919259 | None:intergenic |
| CCTAATTCAACCACTTCTAG+TGG | 0.633519 | 1_4:-40917063 | Msa0163110:CDS |
| AACAAGAGCTGATTCAAGTG+AGG | 0.637616 | 1_4:-40916722 | Msa0163110:CDS |
| TATTGATGAGGATTACGATG+AGG | 0.644942 | 1_4:-40916344 | Msa0163110:CDS |
| GCTCAAGCTCATCAACGTCG+TGG | 0.666837 | 1_4:-40919360 | Msa0163110:CDS |
| TTAGTTGCTCCATTTCCACA+AGG | 0.667277 | 1_4:+40917040 | None:intergenic |
| ATGATGCTAAAGAAGAAACA+TGG | 0.677228 | 1_4:-40916861 | Msa0163110:CDS |
| GAAGTGGTGTTACTTGAGCA+TGG | 0.682174 | 1_4:+40919610 | None:intergenic |
| ATAACCCTAGCAAAGCGTCG+TGG | 0.740781 | 1_4:-40919633 | Msa0163110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTGACATATATAAT+TGG | - | chr1_4:40917909-40917928 | Msa0163110:intron | 10.0% |
| !!! | ATTTGCTATATATTTATTTT+AGG | + | chr1_4:40918122-40918141 | None:intergenic | 10.0% |
| !!! | ATATATATATTTTGATTTGA+GGG | + | chr1_4:40918426-40918445 | None:intergenic | 10.0% |
| !!! | TATATATATATTTTGATTTG+AGG | + | chr1_4:40918427-40918446 | None:intergenic | 10.0% |
| !! | AGTTTCAATAATAATATTAT+TGG | + | chr1_4:40918533-40918552 | None:intergenic | 10.0% |
| !! | TACATAATAATAAAATTAAG+AGG | + | chr1_4:40919793-40919812 | None:intergenic | 10.0% |
| !! | AATAATTATCTATCATGAAA+TGG | - | chr1_4:40917500-40917519 | Msa0163110:intron | 15.0% |
| !! | AAAAAAAAAAAGAACTAACT+AGG | - | chr1_4:40917800-40917819 | Msa0163110:intron | 15.0% |
| !! | CAATACAAAAATGAAAATAA+AGG | - | chr1_4:40918325-40918344 | Msa0163110:intron | 15.0% |
| !!! | TATATATATTTTGATTTGAG+GGG | + | chr1_4:40918425-40918444 | None:intergenic | 15.0% |
| !!! | TCTAAATTTTTAAGTCTTAT+AGG | - | chr1_4:40918491-40918510 | Msa0163110:intron | 15.0% |
| !! | TAAAATTCTTACATTATCTT+CGG | - | chr1_4:40918705-40918724 | Msa0163110:CDS | 15.0% |
| !! | TATTGAAATGAAATTATTGT+AGG | + | chr1_4:40919160-40919179 | None:intergenic | 15.0% |
| !!! | TAATTTTGGTAATCTTTCAA+GGG | - | chr1_4:40917035-40917054 | Msa0163110:CDS | 20.0% |
| !!! | AAAAAGAGTTTTAATGGAAA+AGG | - | chr1_4:40917099-40917118 | Msa0163110:CDS | 20.0% |
| !!! | AAAAGAGTTTTAATGGAAAA+GGG | - | chr1_4:40917100-40917119 | Msa0163110:CDS | 20.0% |
| !! | TTTGATTATAAGAAGAAACA+AGG | - | chr1_4:40917156-40917175 | Msa0163110:CDS | 20.0% |
| !! | TTGATTATAAGAAGAAACAA+GGG | - | chr1_4:40917157-40917176 | Msa0163110:CDS | 20.0% |
| !! | GATAATTATTCATGAAAAGA+AGG | + | chr1_4:40917490-40917509 | None:intergenic | 20.0% |
| !!! | CAAAACATATTTTCCTTATT+TGG | + | chr1_4:40917614-40917633 | None:intergenic | 20.0% |
| !!! | CAAATAAGGAAAATATGTTT+TGG | - | chr1_4:40917612-40917631 | Msa0163110:CDS | 20.0% |
| !! | ATTTATGAAGCTATTAGAAA+TGG | + | chr1_4:40918042-40918061 | None:intergenic | 20.0% |
| !! | ATTATTATCACCACATATAA+TGG | + | chr1_4:40918080-40918099 | None:intergenic | 20.0% |
| !! | GGTGATAATAATATTTGAAA+TGG | - | chr1_4:40918088-40918107 | Msa0163110:intron | 20.0% |
| !!! | AATTTTTAAGTCTTATAGGT+AGG | - | chr1_4:40918495-40918514 | Msa0163110:intron | 20.0% |
| !!! | ATTTTATCATCACAATGATA+GGG | + | chr1_4:40918691-40918710 | None:intergenic | 20.0% |
| !!! | AATTTTATCATCACAATGAT+AGG | + | chr1_4:40918692-40918711 | None:intergenic | 20.0% |
| !! | TGTACTTATATTGAAAGATT+TGG | - | chr1_4:40919258-40919277 | Msa0163110:CDS | 20.0% |
| !!! | GTTGATTATTTTTCACAAAT+TGG | - | chr1_4:40919336-40919355 | Msa0163110:CDS | 20.0% |
| !!! | TTTGAATATTTCTATTGATG+AGG | - | chr1_4:40919566-40919585 | Msa0163110:CDS | 20.0% |
| ! | GGATATTATGTACTTCTTTA+AGG | + | chr1_4:40916195-40916214 | None:intergenic | 25.0% |
| ! | TAATATCCTAAAGATGAGAA+CGG | - | chr1_4:40916207-40916226 | Msa0163110:three_prime_UTR | 25.0% |
| ! | GATAGTTTCCAACAAAAAAT+TGG | - | chr1_4:40916816-40916835 | Msa0163110:CDS | 25.0% |
| ! | TTCCAACAAAAAATTGGTAT+TGG | - | chr1_4:40916822-40916841 | Msa0163110:CDS | 25.0% |
| !!! | ATCCAATACCAATTTTTTGT+TGG | + | chr1_4:40916827-40916846 | None:intergenic | 25.0% |
| !! | GTAATGGAAAAGTTTGATAA+AGG | - | chr1_4:40916961-40916980 | Msa0163110:CDS | 25.0% |
| !! | TCTCTTTCTCTTTCTAATTT+TGG | - | chr1_4:40917021-40917040 | Msa0163110:CDS | 25.0% |
| !!! | CTAATTTTGGTAATCTTTCA+AGG | - | chr1_4:40917034-40917053 | Msa0163110:CDS | 25.0% |
| ! | GAAAAAGTTGAAGAGATTAA+GGG | - | chr1_4:40917069-40917088 | Msa0163110:CDS | 25.0% |
| !!! | CTTGCAAAAAAGAGTTTTAA+TGG | - | chr1_4:40917093-40917112 | Msa0163110:CDS | 25.0% |
| ! | GGTAAAATTAACATGAAGTT+TGG | - | chr1_4:40917400-40917419 | Msa0163110:intron | 25.0% |
| !!! | TTAGCTTTTAACCTAGTAAA+AGG | + | chr1_4:40917562-40917581 | None:intergenic | 25.0% |
| !! | TTTCCTATTTGTTTCTTAAG+TGG | - | chr1_4:40917646-40917665 | Msa0163110:CDS | 25.0% |
| ! | TAACCACTTAAGAAACAAAT+AGG | + | chr1_4:40917652-40917671 | None:intergenic | 25.0% |
| ! | TTCTTAAGTGGTTATTGTAA+TGG | - | chr1_4:40917658-40917677 | Msa0163110:CDS | 25.0% |
| ! | TCTTAAGTGGTTATTGTAAT+GGG | - | chr1_4:40917659-40917678 | Msa0163110:CDS | 25.0% |
| !!! | TTTTTAACTCTTTCCTAGTT+AGG | + | chr1_4:40917783-40917802 | None:intergenic | 25.0% |
| ! | ATGGCAAAAAGATATAATAC+CGG | - | chr1_4:40918972-40918991 | Msa0163110:CDS | 25.0% |
| ! | AAATAGCAAAAGAATTAGCT+AGG | - | chr1_4:40919121-40919140 | Msa0163110:CDS | 25.0% |
| !! | TTTCACAAATTGGTTTCAAA+AGG | - | chr1_4:40919346-40919365 | Msa0163110:CDS | 25.0% |
| !! | TTCACAAATTGGTTTCAAAA+GGG | - | chr1_4:40919347-40919366 | Msa0163110:CDS | 25.0% |
| !! | TATTGAGAAAGGAAAAGTTT+TGG | - | chr1_4:40919371-40919390 | Msa0163110:CDS | 25.0% |
| !! | TGATATTAATGTTGCTACTT+TGG | - | chr1_4:40919515-40919534 | Msa0163110:CDS | 25.0% |
| ! | AAAGATTCTCTTCAAATTTC+AGG | - | chr1_4:40919647-40919666 | Msa0163110:CDS | 25.0% |
| ! | GTAACTACATGTATATTAGA+AGG | - | chr1_4:40919810-40919829 | Msa0163110:five_prime_UTR | 25.0% |
| AATATCCTAAAGATGAGAAC+GGG | - | chr1_4:40916208-40916227 | Msa0163110:three_prime_UTR | 30.0% | |
| AGCTGTTCTTAATAATCCAT+TGG | + | chr1_4:40916365-40916384 | None:intergenic | 30.0% | |
| ! | ACTAAAGCATTTGAGATAGA+AGG | + | chr1_4:40916526-40916545 | None:intergenic | 30.0% |
| ! | AATTGGTATTGGATCCAATT+AGG | - | chr1_4:40916833-40916852 | Msa0163110:CDS | 30.0% |
| ! | ATTGGTATTGGATCCAATTA+GGG | - | chr1_4:40916834-40916853 | Msa0163110:CDS | 30.0% |
| !! | AGAAAGAGTATTGTTGTTGT+TGG | - | chr1_4:40916901-40916920 | Msa0163110:CDS | 30.0% |
| !! | GATGTTGATGAGTCTTTTAA+AGG | - | chr1_4:40916985-40917004 | Msa0163110:CDS | 30.0% |
| GGAAAAAGTTGAAGAGATTA+AGG | - | chr1_4:40917068-40917087 | Msa0163110:CDS | 30.0% | |
| !! | AAAGGGTATGTTTTGTATCT+TGG | - | chr1_4:40917117-40917136 | Msa0163110:CDS | 30.0% |
| TGTATCTTGGAGATCTAAAA+TGG | - | chr1_4:40917130-40917149 | Msa0163110:CDS | 30.0% | |
| TAGAGGTTATTATTGTCCTT+TGG | - | chr1_4:40917185-40917204 | Msa0163110:CDS | 30.0% | |
| !! | GATAATGGAGATTGGAAAAT+TGG | - | chr1_4:40917215-40917234 | Msa0163110:CDS | 30.0% |
| GGAAAATTGGTTAATGATGT+TGG | - | chr1_4:40917228-40917247 | Msa0163110:CDS | 30.0% | |
| ! | TTGGAGAATGTGGAAAATTT+TGG | - | chr1_4:40917247-40917266 | Msa0163110:CDS | 30.0% |
| !!! | ATGTGTATTGCTACTTTTCA+AGG | - | chr1_4:40917273-40917292 | Msa0163110:CDS | 30.0% |
| GGTTACATGAGATGTAAAAA+TGG | - | chr1_4:40917294-40917313 | Msa0163110:CDS | 30.0% | |
| ATCTATCATGAAATGGACAT+TGG | - | chr1_4:40917507-40917526 | Msa0163110:intron | 30.0% | |
| ATGAAATGGACATTGGAAAA+GGG | - | chr1_4:40917514-40917533 | Msa0163110:intron | 30.0% | |
| ! | AGTTGTCTTTTCCTTTTACT+AGG | - | chr1_4:40917548-40917567 | Msa0163110:intron | 30.0% |
| !! | CATATTTTCCTTATTTGGCT+TGG | + | chr1_4:40917609-40917628 | None:intergenic | 30.0% |
| ! | GGTTATTGTAATGGGAAAAA+TGG | - | chr1_4:40917667-40917686 | Msa0163110:CDS | 30.0% |
| AACCAAAAAAAGACCTAACT+AGG | - | chr1_4:40917767-40917786 | Msa0163110:intron | 30.0% | |
| !!! | TTCCTAGTTAGGTCTTTTTT+TGG | + | chr1_4:40917772-40917791 | None:intergenic | 30.0% |
| GCTATTAGAAATGTGTTAAC+TGG | + | chr1_4:40918011-40918030 | None:intergenic | 30.0% | |
| !! | AGCTGTTTTACCATTATATG+TGG | - | chr1_4:40918067-40918086 | Msa0163110:intron | 30.0% |
| GGGGCATGATAAAAAATAAT+AGG | + | chr1_4:40918406-40918425 | None:intergenic | 30.0% | |
| ! | ATTTTACAGAATGTCCAAGT+AGG | - | chr1_4:40918616-40918635 | Msa0163110:CDS | 30.0% |
| ! | GGTATTATATCTTTTTGCCA+TGG | + | chr1_4:40918973-40918992 | None:intergenic | 30.0% |
| ATGATGCTAAAGAAGAAACA+TGG | - | chr1_4:40919061-40919080 | Msa0163110:CDS | 30.0% | |
| !! | AATTAGCTAGGCTTGTTTTT+GGG | - | chr1_4:40919133-40919152 | Msa0163110:CDS | 30.0% |
| AATGTCAAGTAATCCTCATA+GGG | - | chr1_4:40919287-40919306 | Msa0163110:CDS | 30.0% | |
| !!! | GGAAAAGTTTTGGATTCAAA+TGG | - | chr1_4:40919381-40919400 | Msa0163110:CDS | 30.0% |
| !! | TCTTGAGATGATCTTTGTTT+TGG | + | chr1_4:40919483-40919502 | None:intergenic | 30.0% |
| GACAAGTTCTTATGTTTCTT+TGG | - | chr1_4:40919542-40919561 | Msa0163110:CDS | 30.0% | |
| ! | ATAGATTGGTGGATGAAATT+GGG | - | chr1_4:40919604-40919623 | Msa0163110:CDS | 30.0% |
| !!! | TTTTTCCTTCTTTTCTAGCT+AGG | - | chr1_4:40919707-40919726 | Msa0163110:exon | 30.0% |
| ATAGTGTTTGCAACATGAAG+TGG | + | chr1_4:40916331-40916350 | None:intergenic | 35.0% | |
| ACTATGCTTAGTGTTACCAA+TGG | - | chr1_4:40916346-40916365 | Msa0163110:CDS | 35.0% | |
| AACTTGTAATAGCCCTATGT+TGG | - | chr1_4:40916468-40916487 | Msa0163110:CDS | 35.0% | |
| ACTTGTAATAGCCCTATGTT+GGG | - | chr1_4:40916469-40916488 | Msa0163110:CDS | 35.0% | |
| AATGATGAGAACCCAACATA+GGG | + | chr1_4:40916483-40916502 | None:intergenic | 35.0% | |
| !! | TCAACAACAACCACTTTTGA+CGG | - | chr1_4:40916597-40916616 | Msa0163110:CDS | 35.0% |
| TCATAACCCTACTAACACTA+GGG | + | chr1_4:40916666-40916685 | None:intergenic | 35.0% | |
| ! | AGAAACAGCTTGTTCAACAT+TGG | + | chr1_4:40916722-40916741 | None:intergenic | 35.0% |
| !! | TGTTGAACAAGCTGTTTCTT+TGG | - | chr1_4:40916723-40916742 | Msa0163110:CDS | 35.0% |
| GAAAATCCTTCTACTATGAG+TGG | - | chr1_4:40916745-40916764 | Msa0163110:CDS | 35.0% | |
| TACTATGAGTGGAAAGTCAA+AGG | - | chr1_4:40916756-40916775 | Msa0163110:CDS | 35.0% | |
| TTGATATCACCAACCCTAAT+TGG | + | chr1_4:40916850-40916869 | None:intergenic | 35.0% | |
| ! | ACTCTTGAAGGTGTAGTTAA+AGG | - | chr1_4:40916937-40916956 | Msa0163110:CDS | 35.0% |
| AGGTGTAGTTAAAGGAGTAA+TGG | - | chr1_4:40916945-40916964 | Msa0163110:CDS | 35.0% | |
| TCTTTCAAGGGTAGAAATTG+AGG | - | chr1_4:40917047-40917066 | Msa0163110:CDS | 35.0% | |
| AAGAAACAAGGGATGATTAG+AGG | - | chr1_4:40917168-40917187 | Msa0163110:CDS | 35.0% | |
| TCCTTTGGATCACATGATAA+TGG | - | chr1_4:40917200-40917219 | Msa0163110:CDS | 35.0% | |
| TCCATTATCATGTGATCCAA+AGG | + | chr1_4:40917204-40917223 | None:intergenic | 35.0% | |
| !! | GATCACATGATAATGGAGAT+TGG | - | chr1_4:40917207-40917226 | Msa0163110:CDS | 35.0% |
| GTTAATGATGTTGGAGAATG+TGG | - | chr1_4:40917237-40917256 | Msa0163110:CDS | 35.0% | |
| ATCCATCACTTGAGACTATT+TGG | - | chr1_4:40917319-40917338 | Msa0163110:intron | 35.0% | |
| TTCCAAATAGTCTCAAGTGA+TGG | + | chr1_4:40917324-40917343 | None:intergenic | 35.0% | |
| ACAGTTACAAGTTACAGTGA+AGG | + | chr1_4:40917439-40917458 | None:intergenic | 35.0% | |
| ! | TGTAACTTGTAACTGTGCTT+TGG | - | chr1_4:40917443-40917462 | Msa0163110:intron | 35.0% |
| CATGAAATGGACATTGGAAA+AGG | - | chr1_4:40917513-40917532 | Msa0163110:intron | 35.0% | |
| CATTTAAGCCAAGCCAAATA+AGG | - | chr1_4:40917598-40917617 | Msa0163110:CDS | 35.0% | |
| TGAAGAGCAAAAAGAGGAAA+TGG | + | chr1_4:40918153-40918172 | None:intergenic | 35.0% | |
| AAGCTGAGAATAAAACAAGC+TGG | - | chr1_4:40918203-40918222 | Msa0163110:intron | 35.0% | |
| AGGAATTGCTTACAATGATC+AGG | - | chr1_4:40918345-40918364 | Msa0163110:intron | 35.0% | |
| AAAAAGTGGAACTCTATGTG+TGG | - | chr1_4:40918649-40918668 | Msa0163110:CDS | 35.0% | |
| !! | CACAATGATAGGGTTGTTTT+TGG | + | chr1_4:40918681-40918700 | None:intergenic | 35.0% |
| AAACCTGATGTAGATGAAGA+AGG | + | chr1_4:40918736-40918755 | None:intergenic | 35.0% | |
| ! | CACTTTGAGAGATCCAAAAA+TGG | + | chr1_4:40918813-40918832 | None:intergenic | 35.0% |
| !! | CATTTTTGGATCTCTCAAAG+TGG | - | chr1_4:40918811-40918830 | Msa0163110:CDS | 35.0% |
| GTTTGAAGGTTCATTTGACT+TGG | + | chr1_4:40918839-40918858 | None:intergenic | 35.0% | |
| CACTAGAAGTGGTTGAATTA+GGG | + | chr1_4:40918861-40918880 | None:intergenic | 35.0% | |
| !! | ATGCAATGCTTTGGAGAAAA+AGG | - | chr1_4:40918945-40918964 | Msa0163110:CDS | 35.0% |
| AATACCGGAAATTGCAAGTA+CGG | - | chr1_4:40918987-40919006 | Msa0163110:CDS | 35.0% | |
| AAAACCGTACTTGCAATTTC+CGG | + | chr1_4:40918994-40919013 | None:intergenic | 35.0% | |
| ! | TTCTTTTTACCAATCCGGAT+CGG | + | chr1_4:40919023-40919042 | None:intergenic | 35.0% |
| !! | TCCGGATTGGTAAAAAGAAA+AGG | - | chr1_4:40919024-40919043 | Msa0163110:CDS | 35.0% |
| ! | CCCTTTTCTTTTTACCAATC+CGG | + | chr1_4:40919028-40919047 | None:intergenic | 35.0% |
| !! | CCGGATTGGTAAAAAGAAAA+GGG | - | chr1_4:40919025-40919044 | Msa0163110:CDS | 35.0% |
| !!! | GAAACATGGTTGTTTTTCCA+AGG | - | chr1_4:40919075-40919094 | Msa0163110:CDS | 35.0% |
| !!! | GTTTTTCCAAGGTGTTGATT+TGG | - | chr1_4:40919086-40919105 | Msa0163110:CDS | 35.0% |
| !! | GAATTAGCTAGGCTTGTTTT+TGG | - | chr1_4:40919132-40919151 | Msa0163110:CDS | 35.0% |
| CAATGTCAAGTAATCCTCAT+AGG | - | chr1_4:40919286-40919305 | Msa0163110:CDS | 35.0% | |
| TCAACAAGAAAAACCCTATG+AGG | + | chr1_4:40919303-40919322 | None:intergenic | 35.0% | |
| TTCAAAAGGGCTATTGAGAA+AGG | - | chr1_4:40919360-40919379 | Msa0163110:CDS | 35.0% | |
| TTTGGATTCAAATGGTGAAG+AGG | - | chr1_4:40919389-40919408 | Msa0163110:CDS | 35.0% | |
| TATTGATGAGGATTACGATG+AGG | - | chr1_4:40919578-40919597 | Msa0163110:CDS | 35.0% | |
| ! | GATAGATTGGTGGATGAAAT+TGG | - | chr1_4:40919603-40919622 | Msa0163110:CDS | 35.0% |
| GAAGAGAATCTTTCTGTCTA+CGG | + | chr1_4:40919640-40919659 | None:intergenic | 35.0% | |
| AGAAACCTAGCTAGAAAAGA+AGG | + | chr1_4:40919715-40919734 | None:intergenic | 35.0% | |
| ATCACGTCTTTGCATTTCTT+AGG | - | chr1_4:40919754-40919773 | Msa0163110:five_prime_UTR | 35.0% | |
| AGTTTCCCGTTCTCATCTTT+AGG | + | chr1_4:40916216-40916235 | None:intergenic | 40.0% | |
| GGAAACTGTTCTTTGCAACA+AGG | - | chr1_4:40916229-40916248 | Msa0163110:three_prime_UTR | 40.0% | |
| TATTACGTTTGCAGCTTCTG+TGG | + | chr1_4:40916260-40916279 | None:intergenic | 40.0% | |
| CTAAAGCCTTGCATTGAAGA+GGG | + | chr1_4:40916408-40916427 | None:intergenic | 40.0% | |
| ! | TCTAAAGCCTTGCATTGAAG+AGG | + | chr1_4:40916409-40916428 | None:intergenic | 40.0% |
| GAATGATGAGAACCCAACAT+AGG | + | chr1_4:40916484-40916503 | None:intergenic | 40.0% | |
| TCAATCTTCACCGTCAAAAG+TGG | + | chr1_4:40916610-40916629 | None:intergenic | 40.0% | |
| TAGATGACCCTAGTGTTAGT+AGG | - | chr1_4:40916656-40916675 | Msa0163110:CDS | 40.0% | |
| AGATGACCCTAGTGTTAGTA+GGG | - | chr1_4:40916657-40916676 | Msa0163110:CDS | 40.0% | |
| CTCATAACCCTACTAACACT+AGG | + | chr1_4:40916667-40916686 | None:intergenic | 40.0% | |
| GACTTTCCACTCATAGTAGA+AGG | + | chr1_4:40916754-40916773 | None:intergenic | 40.0% | |
| GTATTGGATCCAATTAGGGT+TGG | - | chr1_4:40916838-40916857 | Msa0163110:CDS | 40.0% | |
| GAATGTGTAGCTACTCTTGA+AGG | - | chr1_4:40916925-40916944 | Msa0163110:CDS | 40.0% | |
| TATCCTATCACTATACCTGC+TGG | - | chr1_4:40917348-40917367 | Msa0163110:intron | 40.0% | |
| ! | TTCCTCTTTTTGCTCTTCAG+TGG | - | chr1_4:40918154-40918173 | Msa0163110:intron | 40.0% |
| AACCACTGAAGAGCAAAAAG+AGG | + | chr1_4:40918159-40918178 | None:intergenic | 40.0% | |
| ACAAGCTGGTTATTGCATGA+AGG | - | chr1_4:40918217-40918236 | Msa0163110:intron | 40.0% | |
| TGGTTATTGCATGAAGGAGT+AGG | - | chr1_4:40918223-40918242 | Msa0163110:intron | 40.0% | |
| TTGTATTGTTGTAGCCATGC+AGG | + | chr1_4:40918313-40918332 | None:intergenic | 40.0% | |
| ! | TTTTGCAAAGCTCTCCTACT+TGG | + | chr1_4:40918633-40918652 | None:intergenic | 40.0% |
| TAGGAGAGCTTTGCAAAAAG+TGG | - | chr1_4:40918635-40918654 | Msa0163110:CDS | 40.0% | |
| TCACCTTCTTCATCTACATC+AGG | - | chr1_4:40918730-40918749 | Msa0163110:CDS | 40.0% | |
| TCGCTTTGTGACACATTGTT+AGG | + | chr1_4:40918781-40918800 | None:intergenic | 40.0% | |
| GTGGTTGAATTAGGGTTTGA+AGG | + | chr1_4:40918853-40918872 | None:intergenic | 40.0% | |
| CCACTAGAAGTGGTTGAATT+AGG | + | chr1_4:40918862-40918881 | None:intergenic | 40.0% | |
| CCTAATTCAACCACTTCTAG+TGG | - | chr1_4:40918859-40918878 | Msa0163110:CDS | 40.0% | |
| TTAGTTGCTCCATTTCCACA+AGG | + | chr1_4:40918885-40918904 | None:intergenic | 40.0% | |
| GAGAACTCTATGCAATGCTT+TGG | - | chr1_4:40918936-40918955 | Msa0163110:CDS | 40.0% | |
| ! | CTTTGGAGAAAAAGGTTCCA+TGG | - | chr1_4:40918953-40918972 | Msa0163110:CDS | 40.0% |
| TTGCTTCCAAATCAACACCT+TGG | + | chr1_4:40919095-40919114 | None:intergenic | 40.0% | |
| ! | AACAAGAGCTGATTCAAGTG+AGG | - | chr1_4:40919200-40919219 | Msa0163110:CDS | 40.0% |
| GATTCAAATGGTGAAGAGGT+TGG | - | chr1_4:40919393-40919412 | Msa0163110:CDS | 40.0% | |
| TTACGATGAGGACGATAGAT+TGG | - | chr1_4:40919590-40919609 | Msa0163110:CDS | 40.0% | |
| !! | GAAGTGGTGTTACTTGAGCA+TGG | + | chr1_4:40916315-40916334 | None:intergenic | 45.0% |
| AGCTTGAGCACGCTTAAAAG+CGG | + | chr1_4:40916551-40916570 | None:intergenic | 45.0% | |
| AGTAGGGTTATGAGAGAAGC+AGG | - | chr1_4:40916673-40916692 | Msa0163110:CDS | 45.0% | |
| GTAGGGTTATGAGAGAAGCA+GGG | - | chr1_4:40916674-40916693 | Msa0163110:CDS | 45.0% | |
| CTTCCAGCAGGTATAGTGAT+AGG | + | chr1_4:40917354-40917373 | None:intergenic | 45.0% | |
| GATTGAGTCTCATCACTGAC+AGG | - | chr1_4:40917379-40917398 | Msa0163110:intron | 45.0% | |
| CAAGTTCAAGTCTTCCTGCA+TGG | - | chr1_4:40918296-40918315 | Msa0163110:intron | 45.0% | |
| AGGATGTTGTTGCTGCTCAT+AGG | + | chr1_4:40918761-40918780 | None:intergenic | 45.0% | |
| AGATCCAAAAATGGCGATCG+TGG | + | chr1_4:40918804-40918823 | None:intergenic | 45.0% | |
| !! | TTCTAGTGGCCTTGTGGAAA+TGG | - | chr1_4:40918873-40918892 | Msa0163110:CDS | 45.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr1_4:40916097-40916116 | None:intergenic | 50.0% | |
| CGTTTGCAGCTTCTGTGGTT+AGG | + | chr1_4:40916255-40916274 | None:intergenic | 50.0% | |
| !! | ATAACCCTAGCAAAGCGTCG+TGG | - | chr1_4:40916289-40916308 | Msa0163110:CDS | 50.0% |
| AGCCTTGCATTGAAGAGGGT+GGG | + | chr1_4:40916404-40916423 | None:intergenic | 50.0% | |
| AAGCCTTGCATTGAAGAGGG+TGG | + | chr1_4:40916405-40916424 | None:intergenic | 50.0% | |
| GGGCTATTACAAGTTGTCGC+TGG | + | chr1_4:40916463-40916482 | None:intergenic | 50.0% | |
| CTCAATCTCAAGCTTCCAGC+AGG | + | chr1_4:40917366-40917385 | None:intergenic | 50.0% | |
| ! | AACCACTTCTAGTGGCCTTG+TGG | - | chr1_4:40918867-40918886 | Msa0163110:CDS | 50.0% |
| TTCCACAAGGCCACTAGAAG+TGG | + | chr1_4:40918872-40918891 | None:intergenic | 50.0% | |
| ! | ACGGTTTTGCAATGCCGATC+CGG | - | chr1_4:40919006-40919025 | Msa0163110:CDS | 50.0% |
| TTTGCAATGCCGATCCGGAT+TGG | - | chr1_4:40919011-40919030 | Msa0163110:CDS | 50.0% | |
| CGATGAGGACGATAGATTGG+TGG | - | chr1_4:40919593-40919612 | Msa0163110:CDS | 50.0% | |
| ATGGCCACGACGCTTTGCTA+GGG | + | chr1_4:40916296-40916315 | None:intergenic | 55.0% | |
| CTCCCACCCTCTTCAATGCA+AGG | - | chr1_4:40916399-40916418 | Msa0163110:CDS | 55.0% | |
| GCTCAAGCTCATCAACGTCG+TGG | - | chr1_4:40916562-40916581 | Msa0163110:CDS | 55.0% | |
| !! | GCGACCACGATCGCCATTTT+TGG | - | chr1_4:40918797-40918816 | Msa0163110:CDS | 55.0% |
| CATGGCCACGACGCTTTGCT+AGG | + | chr1_4:40916297-40916316 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 40916088 | 40919856 | 40916088 | ID=Msa0163110;Name=Msa0163110 |
| chr1_4 | mRNA | 40916088 | 40919856 | 40916088 | ID=Msa0163110-mRNA-1;Parent=Msa0163110;Name=Msa0163110-mRNA-1;_AED=0.03;_eAED=0.03;_QI=132|1|1|1|1|1|3|179|808 |
| chr1_4 | exon | 40916088 | 40917319 | 40916088 | ID=Msa0163110-mRNA-1:exon:11769;Parent=Msa0163110-mRNA-1 |
| chr1_4 | exon | 40917578 | 40917770 | 40917578 | ID=Msa0163110-mRNA-1:exon:11768;Parent=Msa0163110-mRNA-1 |
| chr1_4 | exon | 40918544 | 40919856 | 40918544 | ID=Msa0163110-mRNA-1:exon:11767;Parent=Msa0163110-mRNA-1 |
| chr1_4 | five_prime_UTR | 40919725 | 40919856 | 40919725 | ID=Msa0163110-mRNA-1:five_prime_utr;Parent=Msa0163110-mRNA-1 |
| chr1_4 | CDS | 40918544 | 40919724 | 40918544 | ID=Msa0163110-mRNA-1:cds;Parent=Msa0163110-mRNA-1 |
| chr1_4 | CDS | 40917578 | 40917770 | 40917578 | ID=Msa0163110-mRNA-1:cds;Parent=Msa0163110-mRNA-1 |
| chr1_4 | CDS | 40916267 | 40917319 | 40916267 | ID=Msa0163110-mRNA-1:cds;Parent=Msa0163110-mRNA-1 |
| chr1_4 | three_prime_UTR | 40916088 | 40916266 | 40916088 | ID=Msa0163110-mRNA-1:three_prime_utr;Parent=Msa0163110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
