Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701720 | PNX76972.1 | 87.649 | 672 | 80 | 3 | 8 | 676 | 2 | 673 | 0.0 | 1198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701720 | sp|Q9ZP55|DRP4C_ARATH | 58.740 | 635 | 258 | 3 | 35 | 667 | 33 | 665 | 0.0 | 773 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701720 | A0A2K3LEM1 | 87.649 | 672 | 80 | 3 | 8 | 676 | 2 | 673 | 0.0 | 1198 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002580 | Msa0701720 | 0.834944 | 2.236479e-56 | -8.615850e-47 |
| Msa0015150 | Msa0701720 | 0.845566 | 3.749065e-59 | -8.615850e-47 |
| Msa0029960 | Msa0701720 | 0.801631 | 8.220892e-49 | -8.615850e-47 |
| Msa0029970 | Msa0701720 | 0.816163 | 6.371694e-52 | -8.615850e-47 |
| Msa0050660 | Msa0701720 | 0.833428 | 5.364621e-56 | -8.615850e-47 |
| Msa0050700 | Msa0701720 | 0.835619 | 1.509684e-56 | -8.615850e-47 |
| Msa0050790 | Msa0701720 | 0.821918 | 3.126906e-53 | -8.615850e-47 |
| Msa0064120 | Msa0701720 | 0.814564 | 1.445004e-51 | -8.615850e-47 |
| Msa0071850 | Msa0701720 | 0.818386 | 2.013965e-52 | -8.615850e-47 |
| Msa0071860 | Msa0701720 | 0.820802 | 5.659377e-53 | -8.615850e-47 |
| Msa0102110 | Msa0701720 | 0.802648 | 5.077374e-49 | -8.615850e-47 |
| Msa0108880 | Msa0701720 | 0.842392 | 2.660025e-58 | -8.615850e-47 |
| Msa0609300 | Msa0701720 | 0.801307 | 9.575651e-49 | -8.615850e-47 |
| Msa0614850 | Msa0701720 | 0.803381 | 3.581783e-49 | -8.615850e-47 |
| Msa0616210 | Msa0701720 | 0.817575 | 3.071885e-52 | -8.615850e-47 |
| Msa0655700 | Msa0701720 | 0.812737 | 3.647076e-51 | -8.615850e-47 |
| Msa0657440 | Msa0701720 | 0.912675 | 1.483378e-83 | -8.615850e-47 |
| Msa0675330 | Msa0701720 | 0.856106 | 4.026079e-62 | -8.615850e-47 |
| Msa0693890 | Msa0701720 | 0.828742 | 7.591728e-55 | -8.615850e-47 |
| Msa0699540 | Msa0701720 | 0.822851 | 1.898339e-53 | -8.615850e-47 |
| Msa0700460 | Msa0701720 | 0.810510 | 1.112326e-50 | -8.615850e-47 |
| Msa0701720 | Msa0703710 | 0.827631 | 1.406175e-54 | -8.615850e-47 |
| Msa0701720 | Msa0738700 | 0.833098 | 6.481274e-56 | -8.615850e-47 |
| Msa0701720 | Msa0755930 | 0.804662 | 1.940167e-49 | -8.615850e-47 |
| Msa0701720 | Msa0829300 | 0.820229 | 7.658706e-53 | -8.615850e-47 |
| Msa0701720 | Msa0829330 | 0.813160 | 2.946369e-51 | -8.615850e-47 |
| Msa0701720 | Msa0835350 | 0.801244 | 9.866824e-49 | -8.615850e-47 |
| Msa0701720 | Msa0859290 | 0.829047 | 6.402608e-55 | -8.615850e-47 |
| Msa0701720 | Msa1009950 | 0.802169 | 6.374114e-49 | -8.615850e-47 |
| Msa0701720 | Msa1021590 | 0.808911 | 2.453569e-50 | -8.615850e-47 |
| Msa0701720 | Msa1029530 | 0.834906 | 2.286166e-56 | -8.615850e-47 |
| Msa0701720 | Msa1029800 | 0.800013 | 1.758442e-48 | -8.615850e-47 |
| Msa0701720 | Msa1042190 | 0.803449 | 3.467375e-49 | -8.615850e-47 |
| Msa0701720 | Msa1051840 | 0.816140 | 6.448439e-52 | -8.615850e-47 |
| Msa0701720 | Msa1078820 | 0.855289 | 6.971513e-62 | -8.615850e-47 |
| Msa0701720 | Msa1081690 | 0.828828 | 7.235760e-55 | -8.615850e-47 |
| Msa0701720 | Msa1105640 | 0.823022 | 1.732188e-53 | -8.615850e-47 |
| Msa0701720 | Msa1121310 | 0.828298 | 9.718341e-55 | -8.615850e-47 |
| Msa0701720 | Msa1123970 | 0.860860 | 1.538094e-63 | -8.615850e-47 |
| Msa0701720 | Msa1148960 | 0.817113 | 3.903095e-52 | -8.615850e-47 |
| Msa0701720 | Msa1169650 | 0.854853 | 9.333670e-62 | -8.615850e-47 |
| Msa0701720 | Msa1187760 | 0.807834 | 4.164167e-50 | -8.615850e-47 |
| Msa0701720 | Msa1203300 | 0.812311 | 4.519343e-51 | -8.615850e-47 |
| Msa0701720 | Msa1265650 | 0.834310 | 3.227560e-56 | -8.615850e-47 |
| Msa0701720 | Msa1268630 | 0.817701 | 2.877286e-52 | -8.615850e-47 |
| Msa0701720 | Msa1296950 | 0.800161 | 1.640745e-48 | -8.615850e-47 |
| Msa0701720 | Msa1303560 | 0.831625 | 1.501340e-55 | -8.615850e-47 |
| Msa0701720 | Msa1303650 | 0.837178 | 6.056971e-57 | -8.615850e-47 |
| Msa0701720 | Msa1315160 | 0.816672 | 4.900320e-52 | -8.615850e-47 |
| Msa0701720 | Msa1372040 | 0.823984 | 1.031872e-53 | -8.615850e-47 |
| Msa0701720 | Msa1384460 | 0.837872 | 4.021233e-57 | -8.615850e-47 |
| Msa0701720 | Msa1393780 | 0.807423 | 5.092221e-50 | -8.615850e-47 |
| Msa0701720 | Msa1415540 | 0.832200 | 1.082413e-55 | -8.615850e-47 |
| Msa0701720 | Msa1433790 | 0.929841 | 3.889831e-93 | -8.615850e-47 |
| Msa0701720 | Msa1440630 | 0.822683 | 2.077340e-53 | -8.615850e-47 |
| Msa0121330 | Msa0701720 | 0.805081 | 1.585644e-49 | -8.615850e-47 |
| Msa0128310 | Msa0701720 | 0.803911 | 2.780232e-49 | -8.615850e-47 |
| Msa0155180 | Msa0701720 | 0.810327 | 1.217773e-50 | -8.615850e-47 |
| Msa0161930 | Msa0701720 | 0.830459 | 2.902914e-55 | -8.615850e-47 |
| Msa0163110 | Msa0701720 | 0.820110 | 8.153364e-53 | -8.615850e-47 |
| Msa0174440 | Msa0701720 | 0.806532 | 7.857306e-50 | -8.615850e-47 |
| Msa0188610 | Msa0701720 | 0.862906 | 3.636990e-64 | -8.615850e-47 |
| Msa0205440 | Msa0701720 | 0.809861 | 1.535190e-50 | -8.615850e-47 |
| Msa0230800 | Msa0701720 | 0.864739 | 9.788824e-65 | -8.615850e-47 |
| Msa0230870 | Msa0701720 | 0.878329 | 3.067652e-69 | -8.615850e-47 |
| Msa0233650 | Msa0701720 | 0.807797 | 4.241153e-50 | -8.615850e-47 |
| Msa0405680 | Msa0701720 | 0.806161 | 9.408359e-50 | -8.615850e-47 |
| Msa0418970 | Msa0701720 | 0.808129 | 3.604047e-50 | -8.615850e-47 |
| Msa0435210 | Msa0701720 | 0.831903 | 1.281894e-55 | -8.615850e-47 |
| Msa0436910 | Msa0701720 | 0.843838 | 1.095030e-58 | -8.615850e-47 |
| Msa0451170 | Msa0701720 | 0.806664 | 7.369056e-50 | -8.615850e-47 |
| Msa0472950 | Msa0701720 | 0.825826 | 3.793677e-54 | -8.615850e-47 |
| Msa0479320 | Msa0701720 | 0.821106 | 4.815118e-53 | -8.615850e-47 |
| Msa0248680 | Msa0701720 | 0.809846 | 1.546162e-50 | -8.615850e-47 |
| Msa0270340 | Msa0701720 | 0.856686 | 2.720610e-62 | -8.615850e-47 |
| Msa0286940 | Msa0701720 | 0.818791 | 1.629709e-52 | -8.615850e-47 |
| Msa0325540 | Msa0701720 | 0.829156 | 6.027440e-55 | -8.615850e-47 |
| Msa0517250 | Msa0701720 | 0.810433 | 1.155548e-50 | -8.615850e-47 |
| Msa0528570 | Msa0701720 | 0.833977 | 3.911329e-56 | -8.615850e-47 |
| Msa0541300 | Msa0701720 | 0.868064 | 8.618550e-66 | -8.615850e-47 |
| Msa0541310 | Msa0701720 | 0.867086 | 1.773410e-65 | -8.615850e-47 |
| Msa0562560 | Msa0701720 | 0.802826 | 4.666258e-49 | -8.615850e-47 |
| Msa0563940 | Msa0701720 | 0.805790 | 1.126306e-49 | -8.615850e-47 |
| Msa0565640 | Msa0701720 | 0.947150 | 1.175238e-105 | -8.615850e-47 |
| Msa0565660 | Msa0701720 | 0.821243 | 4.479062e-53 | -8.615850e-47 |
| Msa0570010 | Msa0701720 | 0.800852 | 1.186830e-48 | -8.615850e-47 |
| Msa0570120 | Msa0701720 | 0.800670 | 1.292792e-48 | -8.615850e-47 |
| Msa0574050 | Msa0701720 | 0.809946 | 1.471398e-50 | -8.615850e-47 |
| Msa0585020 | Msa0701720 | 0.856370 | 3.369279e-62 | -8.615850e-47 |
| Msa0597270 | Msa0701720 | 0.849940 | 2.341550e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701720 | MtrunA17_Chr8g0379961 | 86.431 | 678 | 86 | 3 | 1 | 676 | 1 | 674 | 0.0 | 1191 |
| Msa0701720 | MtrunA17_Chr8g0379941 | 82.661 | 669 | 113 | 3 | 6 | 673 | 11 | 677 | 0.0 | 1129 |
| Msa0701720 | MtrunA17_Chr8g0379951 | 92.800 | 125 | 9 | 0 | 437 | 561 | 1 | 125 | 6.68e-78 | 244 |
| Msa0701720 | MtrunA17_Chr4g0049731 | 34.328 | 402 | 237 | 13 | 65 | 450 | 35 | 425 | 2.00e-42 | 164 |
| Msa0701720 | MtrunA17_Chr2g0279671 | 37.261 | 314 | 185 | 6 | 61 | 364 | 40 | 351 | 4.75e-41 | 160 |
| Msa0701720 | MtrunA17_Chr5g0396561 | 30.128 | 468 | 291 | 15 | 67 | 516 | 35 | 484 | 1.53e-34 | 139 |
| Msa0701720 | MtrunA17_Chr8g0391891 | 35.461 | 282 | 163 | 6 | 67 | 335 | 35 | 310 | 7.68e-33 | 134 |
| Msa0701720 | MtrunA17_Chr7g0233071 | 34.700 | 317 | 181 | 9 | 67 | 367 | 40 | 346 | 4.53e-32 | 132 |
| Msa0701720 | MtrunA17_Chr8g0388271 | 33.956 | 321 | 178 | 10 | 67 | 367 | 34 | 340 | 6.51e-32 | 131 |
| Msa0701720 | MtrunA17_Chr8g0337041 | 35.220 | 318 | 178 | 10 | 67 | 367 | 40 | 346 | 8.06e-32 | 131 |
| Msa0701720 | MtrunA17_Chr4g0055051 | 34.375 | 320 | 178 | 11 | 67 | 367 | 34 | 340 | 3.72e-31 | 129 |
| Msa0701720 | MtrunA17_Chr8g0346971 | 39.904 | 208 | 105 | 6 | 67 | 262 | 34 | 233 | 1.65e-28 | 121 |
| Msa0701720 | MtrunA17_Chr8g0360401 | 29.694 | 229 | 146 | 6 | 52 | 267 | 27 | 253 | 6.83e-16 | 81.6 |
| Msa0701720 | MtrunA17_Chr1g0161401 | 28.879 | 232 | 139 | 8 | 165 | 384 | 5 | 222 | 1.95e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701720 | AT1G60500.1 | 58.740 | 635 | 258 | 3 | 35 | 667 | 33 | 665 | 0.0 | 773 |
| Msa0701720 | AT1G60530.1 | 75.277 | 271 | 67 | 0 | 35 | 305 | 30 | 300 | 3.85e-143 | 419 |
| Msa0701720 | AT2G14120.4 | 29.955 | 444 | 288 | 10 | 23 | 450 | 1 | 437 | 2.17e-39 | 155 |
| Msa0701720 | AT2G14120.1 | 29.955 | 444 | 288 | 10 | 23 | 450 | 1 | 437 | 2.95e-39 | 155 |
| Msa0701720 | AT2G14120.2 | 29.955 | 444 | 288 | 10 | 23 | 450 | 1 | 437 | 3.03e-39 | 155 |
| Msa0701720 | AT2G14120.3 | 33.828 | 337 | 205 | 6 | 23 | 344 | 1 | 334 | 5.31e-39 | 154 |
| Msa0701720 | AT4G33650.1 | 29.705 | 441 | 266 | 11 | 35 | 450 | 31 | 452 | 8.05e-39 | 154 |
| Msa0701720 | AT4G33650.2 | 29.705 | 441 | 266 | 11 | 35 | 450 | 31 | 452 | 8.30e-39 | 154 |
| Msa0701720 | AT1G14830.1 | 32.903 | 310 | 196 | 6 | 67 | 367 | 35 | 341 | 6.34e-34 | 138 |
| Msa0701720 | AT5G42080.4 | 30.258 | 466 | 293 | 13 | 67 | 516 | 34 | 483 | 4.89e-33 | 135 |
| Msa0701720 | AT5G42080.1 | 30.258 | 466 | 293 | 13 | 67 | 516 | 34 | 483 | 4.89e-33 | 135 |
| Msa0701720 | AT2G44590.3 | 24.307 | 613 | 406 | 19 | 67 | 663 | 35 | 605 | 9.66e-33 | 134 |
| Msa0701720 | AT3G60190.1 | 33.232 | 328 | 199 | 9 | 67 | 384 | 40 | 357 | 1.19e-32 | 134 |
| Msa0701720 | AT5G42080.2 | 34.505 | 313 | 187 | 8 | 67 | 367 | 34 | 340 | 4.95e-32 | 129 |
| Msa0701720 | AT5G42080.3 | 34.505 | 313 | 187 | 8 | 67 | 367 | 34 | 340 | 9.98e-32 | 131 |
| Msa0701720 | AT3G61760.3 | 41.176 | 204 | 110 | 5 | 67 | 266 | 34 | 231 | 3.28e-30 | 125 |
| Msa0701720 | AT3G61760.2 | 34.472 | 322 | 175 | 12 | 67 | 367 | 34 | 340 | 3.86e-30 | 126 |
| Msa0701720 | AT3G61760.1 | 34.472 | 322 | 175 | 12 | 67 | 367 | 34 | 340 | 4.61e-30 | 126 |
| Msa0701720 | AT2G44590.2 | 22.838 | 613 | 398 | 20 | 67 | 663 | 35 | 588 | 2.89e-23 | 105 |
| Msa0701720 | AT2G44590.1 | 28.875 | 329 | 195 | 10 | 67 | 384 | 35 | 335 | 2.05e-22 | 102 |
| Msa0701720 | AT1G53140.1 | 27.119 | 236 | 160 | 5 | 42 | 267 | 36 | 269 | 9.34e-15 | 78.6 |
Find 124 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTTTCAACAAAATTAAT+TGG | 0.173861 | 4_4:+73128150 | None:intergenic |
| CTTGAGGAAGCCAAATTTAT+TGG | 0.191059 | 4_4:-73128246 | Msa0701720:CDS |
| ATTCGGAAGACCAATAAATT+TGG | 0.194065 | 4_4:+73128236 | None:intergenic |
| ATGTACAGGATTGGAAATTA+TGG | 0.207908 | 4_4:-73127520 | Msa0701720:CDS |
| ATCAAGTTTGTTTGCCTTTG+TGG | 0.244719 | 4_4:+73129496 | None:intergenic |
| TATTGTTGGAATTCCTGTTT+TGG | 0.276334 | 4_4:-73128616 | Msa0701720:CDS |
| GAGGAGTCTCCTTCAATATC+AGG | 0.303692 | 4_4:-73127610 | Msa0701720:CDS |
| ATCTGATCATAAATGTTATC+AGG | 0.304162 | 4_4:+73128963 | None:intergenic |
| AGGCCAGATTGACAGCTTAT+TGG | 0.313028 | 4_4:-73127774 | Msa0701720:CDS |
| TTCTAACTATTATCAGCTTC+AGG | 0.313313 | 4_4:-73128079 | Msa0701720:CDS |
| GAACTTTGATTTCCTCCATT+AGG | 0.316135 | 4_4:+73128268 | None:intergenic |
| TAACATTTATGATCAGATTA+AGG | 0.317964 | 4_4:-73128958 | Msa0701720:CDS |
| CTTCCAACCATTGTTGTTGT+TGG | 0.322456 | 4_4:-73129320 | Msa0701720:CDS |
| TGGACGTATCTTCTCATTAT+AGG | 0.323367 | 4_4:+73129400 | None:intergenic |
| TCACAAACTGTTGATAAAAC+TGG | 0.334047 | 4_4:-73128840 | Msa0701720:CDS |
| TCCACAGCCAGAGCTTGTTT+TGG | 0.338480 | 4_4:-73129180 | Msa0701720:CDS |
| CCTTACTTCAGAGAAAAGTT+AGG | 0.351453 | 4_4:-73128188 | Msa0701720:CDS |
| TGAAAGTGTATGGAATTATC+TGG | 0.352378 | 4_4:-73128136 | Msa0701720:CDS |
| CTTACTATGGTTGATCTTCC+AGG | 0.352429 | 4_4:-73129014 | Msa0701720:CDS |
| TAAGAAGATTAATGAGAAAC+TGG | 0.360082 | 4_4:-73128535 | Msa0701720:CDS |
| CAAGGGTACCTTTGGTTATG+AGG | 0.366182 | 4_4:-73129220 | Msa0701720:CDS |
| TGTACAGGATTGGAAATTAT+GGG | 0.367267 | 4_4:-73127519 | Msa0701720:CDS |
| CACATGTAACCCTGAGTACT+TGG | 0.369075 | 4_4:-73127956 | Msa0701720:CDS |
| GCAGTTCTTGGCATGAAATT+CGG | 0.376721 | 4_4:+73128219 | None:intergenic |
| GCCTGCTAATTTATCCTCAC+TGG | 0.379029 | 4_4:-73128484 | Msa0701720:CDS |
| TGGAGTTCCTGATCTTACTA+TGG | 0.379945 | 4_4:-73129027 | Msa0701720:CDS |
| CTCCATTAGGAAATCCTTAG+TGG | 0.385218 | 4_4:+73128281 | None:intergenic |
| TAAATCTCCTGAAGGTTTGC+TGG | 0.387244 | 4_4:-73128784 | Msa0701720:CDS |
| TTCAAAATAATACTCTCTTC+AGG | 0.392099 | 4_4:+73128912 | None:intergenic |
| GCTCTGGCTGTGGAAGTAAA+TGG | 0.394731 | 4_4:+73129189 | None:intergenic |
| AACAATAGATTTGTCTATCC+TGG | 0.395168 | 4_4:+73128632 | None:intergenic |
| ATAACTCGTGTTCCTGTTCA+TGG | 0.396246 | 4_4:-73128990 | Msa0701720:CDS |
| ACCTTCTCCAGCAAACCTTC+AGG | 0.399453 | 4_4:+73128777 | None:intergenic |
| TTTCCAATAAGCTGTCAATC+TGG | 0.399717 | 4_4:+73127771 | None:intergenic |
| TTACTACTTGTGAGTCGATA+AGG | 0.405010 | 4_4:-73128866 | Msa0701720:CDS |
| TGTCTCTTCCCTGATATTGA+AGG | 0.410432 | 4_4:+73127601 | None:intergenic |
| TTAATCTTCTTAATGATCTC+TGG | 0.413053 | 4_4:+73128546 | None:intergenic |
| GACGATGTTAACATTGGTCT+TGG | 0.414913 | 4_4:-73128747 | Msa0701720:CDS |
| TTGATGCTCTTGAAAATCTA+AGG | 0.416842 | 4_4:-73129373 | Msa0701720:CDS |
| AATTTGTACAAGGGTACCTT+TGG | 0.424069 | 4_4:-73129228 | Msa0701720:CDS |
| AAGGTCAGAAAAGCAGTTCT+TGG | 0.424321 | 4_4:+73128207 | None:intergenic |
| GTCTTGGTTATGTTTGTGTA+AGG | 0.435750 | 4_4:-73128731 | Msa0701720:CDS |
| ATATCCACACATGTTGAATC+AGG | 0.440980 | 4_4:-73127809 | Msa0701720:CDS |
| ACAGCCACTGAGGAGCTTGC+TGG | 0.443000 | 4_4:-73129101 | Msa0701720:CDS |
| TGGGGTGTTGGAAATCCCTT+TGG | 0.443439 | 4_4:+73129073 | None:intergenic |
| CTTACTTCAGAGAAAAGTTA+GGG | 0.447328 | 4_4:-73128187 | Msa0701720:CDS |
| GGCTACTAGTTTGCATGAGC+TGG | 0.448592 | 4_4:-73128514 | Msa0701720:CDS |
| AGGATAGACAAATCTATTGT+TGG | 0.453655 | 4_4:-73128630 | Msa0701720:CDS |
| TCATTATAGGAAGATACAAT+TGG | 0.460536 | 4_4:+73129413 | None:intergenic |
| GGAAGAGACAGAAGTTGAGC+AGG | 0.460748 | 4_4:-73127588 | Msa0701720:CDS |
| GAATCAGGCTTATGATTTGA+AGG | 0.463037 | 4_4:-73127794 | Msa0701720:CDS |
| TCTTTACTATCAAAGTCAGT+GGG | 0.470875 | 4_4:+73129054 | None:intergenic |
| TTATACTCCTCCAAGTACTC+AGG | 0.473801 | 4_4:+73127946 | None:intergenic |
| TGATACCAGCTAATGATTCA+AGG | 0.474056 | 4_4:+73129270 | None:intergenic |
| GAGCTTGCTGGCACTGCCAA+AGG | 0.478600 | 4_4:-73129089 | Msa0701720:CDS |
| TCCTGAAGGTTTGCTGGAGA+AGG | 0.484851 | 4_4:-73128778 | Msa0701720:CDS |
| GTTGTTGGAGATCAATCATC+TGG | 0.485196 | 4_4:-73129305 | Msa0701720:CDS |
| AGCTTGAAGCACATGCTGAA+TGG | 0.486139 | 4_4:+73128005 | None:intergenic |
| TTATACTCCAAAACAAGCTC+TGG | 0.492061 | 4_4:+73129173 | None:intergenic |
| TATCAAAGTCAGTGGGGTGT+TGG | 0.492352 | 4_4:+73129061 | None:intergenic |
| TTATCAGGTTGACCATGAAC+AGG | 0.495576 | 4_4:+73128978 | None:intergenic |
| TCCAATCCTGTACATAATGT+TGG | 0.498092 | 4_4:+73127528 | None:intergenic |
| GCGTCTCAACATTGCTAAAG+AGG | 0.501157 | 4_4:-73129351 | Msa0701720:CDS |
| GCCAACATTATGTACAGGAT+TGG | 0.501622 | 4_4:-73127529 | Msa0701720:CDS |
| TGCCACTAAGGATTTCCTAA+TGG | 0.506730 | 4_4:-73128283 | Msa0701720:CDS |
| TGTGTGGATATTTCATAAGC+TGG | 0.507052 | 4_4:+73127821 | None:intergenic |
| ACAATTGGTGCAATAGATAG+AGG | 0.511162 | 4_4:+73129428 | None:intergenic |
| GTTTGTGTAAGGAATCGAAT+TGG | 0.512590 | 4_4:-73128720 | Msa0701720:CDS |
| GGTGCAATAGATAGAGGTTG+AGG | 0.516825 | 4_4:+73129434 | None:intergenic |
| CTTATTGGAAAATTGTGCTC+CGG | 0.520290 | 4_4:-73127759 | Msa0701720:CDS |
| GCCAGTGAGGATAAATTAGC+AGG | 0.522213 | 4_4:+73128483 | None:intergenic |
| AGATCAACCATAGTAAGATC+AGG | 0.522883 | 4_4:+73129020 | None:intergenic |
| AGTGTCCTTGAATCATTAGC+TGG | 0.523168 | 4_4:-73129275 | Msa0701720:CDS |
| TCCAAAACAAGCTCTGGCTG+TGG | 0.524796 | 4_4:+73129179 | None:intergenic |
| TGTTGAAAGTAATGCCACTA+AGG | 0.528407 | 4_4:-73128295 | Msa0701720:CDS |
| AATGAACTGTTATCAGCAAA+TGG | 0.537861 | 4_4:-73127655 | Msa0701720:CDS |
| ATCAGCTTGCCACGTGGACA+AGG | 0.540401 | 4_4:-73129251 | Msa0701720:CDS |
| TCAGATTAAGGATATTATCA+TGG | 0.543580 | 4_4:-73128946 | Msa0701720:CDS |
| GGAGGAAATCAAAGTTCTTG+AGG | 0.547046 | 4_4:-73128262 | Msa0701720:CDS |
| AGCTTGCTGGCACTGCCAAA+GGG | 0.547647 | 4_4:-73129088 | Msa0701720:CDS |
| TCTCCAACAACAACAATGGT+TGG | 0.551269 | 4_4:+73129317 | None:intergenic |
| TGTGAATGTTGATCTGCAAA+AGG | 0.555960 | 4_4:-73127686 | Msa0701720:CDS |
| CCGTGGCCAACATTATGTAC+AGG | 0.564192 | 4_4:-73127534 | Msa0701720:CDS |
| AGTGTCACACACTTCTGTCC+AGG | 0.565122 | 4_4:-73128650 | Msa0701720:CDS |
| ACTTTGATAGTAAAGAAGAA+TGG | 0.569006 | 4_4:-73129047 | Msa0701720:CDS |
| TCAAGTACTGTGAAGCTGAA+AGG | 0.569995 | 4_4:-73127865 | Msa0701720:CDS |
| CACTAAGGATTTCCTAATGG+AGG | 0.576778 | 4_4:-73128280 | Msa0701720:CDS |
| AGTGCCAGCAAGCTCCTCAG+TGG | 0.578957 | 4_4:+73129097 | None:intergenic |
| TTCTTTACTATCAAAGTCAG+TGG | 0.579933 | 4_4:+73129053 | None:intergenic |
| TATACTCCTCCAAGTACTCA+GGG | 0.581284 | 4_4:+73127947 | None:intergenic |
| CAATCACATCAATTAACCTC+CGG | 0.585742 | 4_4:+73127740 | None:intergenic |
| CGTCTCAACATTGCTAAAGA+GGG | 0.585949 | 4_4:-73129350 | Msa0701720:CDS |
| AGGAGTCTCCTTCAATATCA+GGG | 0.586223 | 4_4:-73127609 | Msa0701720:CDS |
| ATGTAACCCTGAGTACTTGG+AGG | 0.589927 | 4_4:-73127953 | Msa0701720:CDS |
| GTGGACAAGGAATTTGTACA+AGG | 0.592993 | 4_4:-73129238 | Msa0701720:CDS |
| AAGGCTGATAAATCTCCTGA+AGG | 0.599516 | 4_4:-73128792 | Msa0701720:CDS |
| CAAACAACTTTCAACTGATG+AGG | 0.601066 | 4_4:-73129147 | Msa0701720:CDS |
| GTACAGGATTGGAAATTATG+GGG | 0.608598 | 4_4:-73127518 | Msa0701720:CDS |
| CCTGTACATAATGTTGGCCA+CGG | 0.611603 | 4_4:+73127534 | None:intergenic |
| AACGCTTGCTGTCGTGACAA+AGG | 0.611997 | 4_4:-73128811 | Msa0701720:CDS |
| ACAGGAACACGAGTTATACC+TGG | 0.615115 | 4_4:+73128996 | None:intergenic |
| TGGTGTTGAGAGGCTGCTTG+AGG | 0.618613 | 4_4:-73127629 | Msa0701720:CDS |
| TGTGCTTCAAGCTGTTGAGA+TGG | 0.619725 | 4_4:-73127995 | Msa0701720:CDS |
| TAAGCCTGATTCAACATGTG+TGG | 0.620737 | 4_4:+73127805 | None:intergenic |
| ATTGGAAAATTGTGCTCCGG+AGG | 0.621567 | 4_4:-73127756 | Msa0701720:CDS |
| GGAGGAGTATAACAAGCTGA+TGG | 0.621625 | 4_4:-73127935 | Msa0701720:CDS |
| ACAGCTGACGATGTTAACAT+TGG | 0.623909 | 4_4:-73128753 | Msa0701720:CDS |
| AAGAGTCTTACGAAGATGCA+AGG | 0.624326 | 4_4:-73128695 | Msa0701720:CDS |
| GATTTGCAGAAAAGCTGACA+TGG | 0.626155 | 4_4:+73128455 | None:intergenic |
| CTGTTATCAGCAAATGGTGG+TGG | 0.626367 | 4_4:-73127649 | Msa0701720:CDS |
| GTTGAGGTTGATCATCAACA+TGG | 0.635450 | 4_4:+73129450 | None:intergenic |
| CAAATGGTGGTGGTGTTGAG+AGG | 0.637671 | 4_4:-73127639 | Msa0701720:CDS |
| ACTGTGAAGCTGAAAGGTGT+TGG | 0.640769 | 4_4:-73127859 | Msa0701720:CDS |
| GAAAGAAAGCAAAGAGACCG+TGG | 0.645229 | 4_4:-73127551 | Msa0701720:CDS |
| TTGATCTCCAACAACAACAA+TGG | 0.648908 | 4_4:+73129313 | None:intergenic |
| GTACAAATTCCTTGTCCACG+TGG | 0.660130 | 4_4:+73129242 | None:intergenic |
| TGACATGGCATCAGCCAGTG+AGG | 0.671512 | 4_4:+73128470 | None:intergenic |
| TGCTATAAATACAGCCACTG+AGG | 0.694192 | 4_4:-73129111 | Msa0701720:CDS |
| CTTTACTATCAAAGTCAGTG+GGG | 0.697240 | 4_4:+73129055 | None:intergenic |
| GCTGGTATCAGCTTGCCACG+TGG | 0.699523 | 4_4:-73129257 | Msa0701720:CDS |
| TGGAAACAAGAGTTCCACAA+AGG | 0.707464 | 4_4:-73129510 | Msa0701720:CDS |
| TTACTTCAGAGAAAAGTTAG+GGG | 0.725881 | 4_4:-73128186 | Msa0701720:CDS |
| TGGACAAGGAATTTGTACAA+GGG | 0.728664 | 4_4:-73129237 | Msa0701720:CDS |
| GAACTGTTATCAGCAAATGG+TGG | 0.747464 | 4_4:-73127652 | Msa0701720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACATTTATGATCAGATTA+AGG | - | chr4_4:73128070-73128089 | Msa0701720:CDS | 20.0% |
| !! | CTGAAAAAAATTCTTCTTAT+AGG | - | chr4_4:73128617-73128636 | Msa0701720:CDS | 20.0% |
| !! | ACACTTTCAACAAAATTAAT+TGG | + | chr4_4:73128881-73128900 | None:intergenic | 20.0% |
| !!! | TTAATTTTGTTGAAAGTGTA+TGG | - | chr4_4:73128882-73128901 | Msa0701720:CDS | 20.0% |
| !! | TAACATTTATGATCAGATTA+AGG | - | chr4_4:73128070-73128089 | Msa0701720:CDS | 20.0% |
| !! | CTGAAAAAAATTCTTCTTAT+AGG | - | chr4_4:73128617-73128636 | Msa0701720:CDS | 20.0% |
| !! | ACACTTTCAACAAAATTAAT+TGG | + | chr4_4:73128881-73128900 | None:intergenic | 20.0% |
| !!! | TTAATTTTGTTGAAAGTGTA+TGG | - | chr4_4:73128882-73128901 | Msa0701720:CDS | 20.0% |
| ! | TCATTATAGGAAGATACAAT+TGG | + | chr4_4:73127618-73127637 | None:intergenic | 25.0% |
| !! | ACTTTGATAGTAAAGAAGAA+TGG | - | chr4_4:73127981-73128000 | Msa0701720:CDS | 25.0% |
| ! | ATCTGATCATAAATGTTATC+AGG | + | chr4_4:73128068-73128087 | None:intergenic | 25.0% |
| ! | TCAGATTAAGGATATTATCA+TGG | - | chr4_4:73128082-73128101 | Msa0701720:CDS | 25.0% |
| ! | TTCAAAATAATACTCTCTTC+AGG | + | chr4_4:73128119-73128138 | None:intergenic | 25.0% |
| ! | TTAATCTTCTTAATGATCTC+TGG | + | chr4_4:73128485-73128504 | None:intergenic | 25.0% |
| ! | TAAGAAGATTAATGAGAAAC+TGG | - | chr4_4:73128493-73128512 | Msa0701720:CDS | 25.0% |
| !! | TCTTTTTCTTCTTAGCAATA+AGG | + | chr4_4:73129000-73129019 | None:intergenic | 25.0% |
| ! | TCATTATAGGAAGATACAAT+TGG | + | chr4_4:73127618-73127637 | None:intergenic | 25.0% |
| !! | ACTTTGATAGTAAAGAAGAA+TGG | - | chr4_4:73127981-73128000 | Msa0701720:CDS | 25.0% |
| ! | ATCTGATCATAAATGTTATC+AGG | + | chr4_4:73128068-73128087 | None:intergenic | 25.0% |
| ! | TCAGATTAAGGATATTATCA+TGG | - | chr4_4:73128082-73128101 | Msa0701720:CDS | 25.0% |
| ! | TTCAAAATAATACTCTCTTC+AGG | + | chr4_4:73128119-73128138 | None:intergenic | 25.0% |
| ! | TTAATCTTCTTAATGATCTC+TGG | + | chr4_4:73128485-73128504 | None:intergenic | 25.0% |
| ! | TAAGAAGATTAATGAGAAAC+TGG | - | chr4_4:73128493-73128512 | Msa0701720:CDS | 25.0% |
| !! | TCTTTTTCTTCTTAGCAATA+AGG | + | chr4_4:73129000-73129019 | None:intergenic | 25.0% |
| TTGATGCTCTTGAAAATCTA+AGG | - | chr4_4:73127655-73127674 | Msa0701720:CDS | 30.0% | |
| TCTTTACTATCAAAGTCAGT+GGG | + | chr4_4:73127977-73127996 | None:intergenic | 30.0% | |
| TTCTTTACTATCAAAGTCAG+TGG | + | chr4_4:73127978-73127997 | None:intergenic | 30.0% | |
| ! | TCACAAACTGTTGATAAAAC+TGG | - | chr4_4:73128188-73128207 | Msa0701720:CDS | 30.0% |
| AACAATAGATTTGTCTATCC+TGG | + | chr4_4:73128399-73128418 | None:intergenic | 30.0% | |
| AGGATAGACAAATCTATTGT+TGG | - | chr4_4:73128398-73128417 | Msa0701720:CDS | 30.0% | |
| ! | TATTGTTGGAATTCCTGTTT+TGG | - | chr4_4:73128412-73128431 | Msa0701720:CDS | 30.0% |
| ATTCGGAAGACCAATAAATT+TGG | + | chr4_4:73128795-73128814 | None:intergenic | 30.0% | |
| CTTACTTCAGAGAAAAGTTA+GGG | - | chr4_4:73128841-73128860 | Msa0701720:CDS | 30.0% | |
| TTACTTCAGAGAAAAGTTAG+GGG | - | chr4_4:73128842-73128861 | Msa0701720:CDS | 30.0% | |
| ! | TGAAAGTGTATGGAATTATC+TGG | - | chr4_4:73128892-73128911 | Msa0701720:CDS | 30.0% |
| TTCTAACTATTATCAGCTTC+AGG | - | chr4_4:73128949-73128968 | Msa0701720:CDS | 30.0% | |
| AATGAACTGTTATCAGCAAA+TGG | - | chr4_4:73129373-73129392 | Msa0701720:CDS | 30.0% | |
| ATGTACAGGATTGGAAATTA+TGG | - | chr4_4:73129508-73129527 | Msa0701720:CDS | 30.0% | |
| TGTACAGGATTGGAAATTAT+GGG | - | chr4_4:73129509-73129528 | Msa0701720:CDS | 30.0% | |
| TTGATGCTCTTGAAAATCTA+AGG | - | chr4_4:73127655-73127674 | Msa0701720:CDS | 30.0% | |
| TCTTTACTATCAAAGTCAGT+GGG | + | chr4_4:73127977-73127996 | None:intergenic | 30.0% | |
| TTCTTTACTATCAAAGTCAG+TGG | + | chr4_4:73127978-73127997 | None:intergenic | 30.0% | |
| ! | TCACAAACTGTTGATAAAAC+TGG | - | chr4_4:73128188-73128207 | Msa0701720:CDS | 30.0% |
| AACAATAGATTTGTCTATCC+TGG | + | chr4_4:73128399-73128418 | None:intergenic | 30.0% | |
| AGGATAGACAAATCTATTGT+TGG | - | chr4_4:73128398-73128417 | Msa0701720:CDS | 30.0% | |
| ! | TATTGTTGGAATTCCTGTTT+TGG | - | chr4_4:73128412-73128431 | Msa0701720:CDS | 30.0% |
| ATTCGGAAGACCAATAAATT+TGG | + | chr4_4:73128795-73128814 | None:intergenic | 30.0% | |
| CTTACTTCAGAGAAAAGTTA+GGG | - | chr4_4:73128841-73128860 | Msa0701720:CDS | 30.0% | |
| TTACTTCAGAGAAAAGTTAG+GGG | - | chr4_4:73128842-73128861 | Msa0701720:CDS | 30.0% | |
| ! | TGAAAGTGTATGGAATTATC+TGG | - | chr4_4:73128892-73128911 | Msa0701720:CDS | 30.0% |
| TTCTAACTATTATCAGCTTC+AGG | - | chr4_4:73128949-73128968 | Msa0701720:CDS | 30.0% | |
| AATGAACTGTTATCAGCAAA+TGG | - | chr4_4:73129373-73129392 | Msa0701720:CDS | 30.0% | |
| ATGTACAGGATTGGAAATTA+TGG | - | chr4_4:73129508-73129527 | Msa0701720:CDS | 30.0% | |
| TGTACAGGATTGGAAATTAT+GGG | - | chr4_4:73129509-73129528 | Msa0701720:CDS | 30.0% | |
| ! | ATCAAGTTTGTTTGCCTTTG+TGG | + | chr4_4:73127535-73127554 | None:intergenic | 35.0% |
| ACAATTGGTGCAATAGATAG+AGG | + | chr4_4:73127603-73127622 | None:intergenic | 35.0% | |
| TGGACGTATCTTCTCATTAT+AGG | + | chr4_4:73127631-73127650 | None:intergenic | 35.0% | |
| TTGATCTCCAACAACAACAA+TGG | + | chr4_4:73127718-73127737 | None:intergenic | 35.0% | |
| TGATACCAGCTAATGATTCA+AGG | + | chr4_4:73127761-73127780 | None:intergenic | 35.0% | |
| TGGACAAGGAATTTGTACAA+GGG | - | chr4_4:73127791-73127810 | Msa0701720:CDS | 35.0% | |
| !! | AATTTGTACAAGGGTACCTT+TGG | - | chr4_4:73127800-73127819 | Msa0701720:CDS | 35.0% |
| TTATACTCCAAAACAAGCTC+TGG | + | chr4_4:73127858-73127877 | None:intergenic | 35.0% | |
| !!! | GAGCTTGTTTTGGAGTATAA+TGG | - | chr4_4:73127858-73127877 | Msa0701720:CDS | 35.0% |
| CAAACAACTTTCAACTGATG+AGG | - | chr4_4:73127881-73127900 | Msa0701720:CDS | 35.0% | |
| CTTTACTATCAAAGTCAGTG+GGG | + | chr4_4:73127976-73127995 | None:intergenic | 35.0% | |
| AGATCAACCATAGTAAGATC+AGG | + | chr4_4:73128011-73128030 | None:intergenic | 35.0% | |
| TTACTACTTGTGAGTCGATA+AGG | - | chr4_4:73128162-73128181 | Msa0701720:CDS | 35.0% | |
| GTCTTGGTTATGTTTGTGTA+AGG | - | chr4_4:73128297-73128316 | Msa0701720:CDS | 35.0% | |
| GTTTGTGTAAGGAATCGAAT+TGG | - | chr4_4:73128308-73128327 | Msa0701720:CDS | 35.0% | |
| TGTTGAAAGTAATGCCACTA+AGG | - | chr4_4:73128733-73128752 | Msa0701720:CDS | 35.0% | |
| ! | GAACTTTGATTTCCTCCATT+AGG | + | chr4_4:73128763-73128782 | None:intergenic | 35.0% |
| CTTGAGGAAGCCAAATTTAT+TGG | - | chr4_4:73128782-73128801 | Msa0701720:CDS | 35.0% | |
| !!! | CCTAACTTTTCTCTGAAGTA+AGG | + | chr4_4:73128843-73128862 | None:intergenic | 35.0% |
| CCTTACTTCAGAGAAAAGTT+AGG | - | chr4_4:73128840-73128859 | Msa0701720:CDS | 35.0% | |
| TGTGTGGATATTTCATAAGC+TGG | + | chr4_4:73129210-73129229 | None:intergenic | 35.0% | |
| ATATCCACACATGTTGAATC+AGG | - | chr4_4:73129219-73129238 | Msa0701720:CDS | 35.0% | |
| GAATCAGGCTTATGATTTGA+AGG | - | chr4_4:73129234-73129253 | Msa0701720:CDS | 35.0% | |
| TTTCCAATAAGCTGTCAATC+TGG | + | chr4_4:73129260-73129279 | None:intergenic | 35.0% | |
| CTTATTGGAAAATTGTGCTC+CGG | - | chr4_4:73129269-73129288 | Msa0701720:CDS | 35.0% | |
| CAATCACATCAATTAACCTC+CGG | + | chr4_4:73129291-73129310 | None:intergenic | 35.0% | |
| TGTGAATGTTGATCTGCAAA+AGG | - | chr4_4:73129342-73129361 | Msa0701720:CDS | 35.0% | |
| TCCAATCCTGTACATAATGT+TGG | + | chr4_4:73129503-73129522 | None:intergenic | 35.0% | |
| GTACAGGATTGGAAATTATG+GGG | - | chr4_4:73129510-73129529 | Msa0701720:CDS | 35.0% | |
| ! | ATCAAGTTTGTTTGCCTTTG+TGG | + | chr4_4:73127535-73127554 | None:intergenic | 35.0% |
| ACAATTGGTGCAATAGATAG+AGG | + | chr4_4:73127603-73127622 | None:intergenic | 35.0% | |
| TGGACGTATCTTCTCATTAT+AGG | + | chr4_4:73127631-73127650 | None:intergenic | 35.0% | |
| TTGATCTCCAACAACAACAA+TGG | + | chr4_4:73127718-73127737 | None:intergenic | 35.0% | |
| TGATACCAGCTAATGATTCA+AGG | + | chr4_4:73127761-73127780 | None:intergenic | 35.0% | |
| TGGACAAGGAATTTGTACAA+GGG | - | chr4_4:73127791-73127810 | Msa0701720:CDS | 35.0% | |
| !! | AATTTGTACAAGGGTACCTT+TGG | - | chr4_4:73127800-73127819 | Msa0701720:CDS | 35.0% |
| TTATACTCCAAAACAAGCTC+TGG | + | chr4_4:73127858-73127877 | None:intergenic | 35.0% | |
| !!! | GAGCTTGTTTTGGAGTATAA+TGG | - | chr4_4:73127858-73127877 | Msa0701720:CDS | 35.0% |
| CAAACAACTTTCAACTGATG+AGG | - | chr4_4:73127881-73127900 | Msa0701720:CDS | 35.0% | |
| CTTTACTATCAAAGTCAGTG+GGG | + | chr4_4:73127976-73127995 | None:intergenic | 35.0% | |
| AGATCAACCATAGTAAGATC+AGG | + | chr4_4:73128011-73128030 | None:intergenic | 35.0% | |
| TTACTACTTGTGAGTCGATA+AGG | - | chr4_4:73128162-73128181 | Msa0701720:CDS | 35.0% | |
| GTCTTGGTTATGTTTGTGTA+AGG | - | chr4_4:73128297-73128316 | Msa0701720:CDS | 35.0% | |
| GTTTGTGTAAGGAATCGAAT+TGG | - | chr4_4:73128308-73128327 | Msa0701720:CDS | 35.0% | |
| TGTTGAAAGTAATGCCACTA+AGG | - | chr4_4:73128733-73128752 | Msa0701720:CDS | 35.0% | |
| ! | GAACTTTGATTTCCTCCATT+AGG | + | chr4_4:73128763-73128782 | None:intergenic | 35.0% |
| CTTGAGGAAGCCAAATTTAT+TGG | - | chr4_4:73128782-73128801 | Msa0701720:CDS | 35.0% | |
| !!! | CCTAACTTTTCTCTGAAGTA+AGG | + | chr4_4:73128843-73128862 | None:intergenic | 35.0% |
| CCTTACTTCAGAGAAAAGTT+AGG | - | chr4_4:73128840-73128859 | Msa0701720:CDS | 35.0% | |
| TGTGTGGATATTTCATAAGC+TGG | + | chr4_4:73129210-73129229 | None:intergenic | 35.0% | |
| ATATCCACACATGTTGAATC+AGG | - | chr4_4:73129219-73129238 | Msa0701720:CDS | 35.0% | |
| GAATCAGGCTTATGATTTGA+AGG | - | chr4_4:73129234-73129253 | Msa0701720:CDS | 35.0% | |
| TTTCCAATAAGCTGTCAATC+TGG | + | chr4_4:73129260-73129279 | None:intergenic | 35.0% | |
| CTTATTGGAAAATTGTGCTC+CGG | - | chr4_4:73129269-73129288 | Msa0701720:CDS | 35.0% | |
| CAATCACATCAATTAACCTC+CGG | + | chr4_4:73129291-73129310 | None:intergenic | 35.0% | |
| TGTGAATGTTGATCTGCAAA+AGG | - | chr4_4:73129342-73129361 | Msa0701720:CDS | 35.0% | |
| TCCAATCCTGTACATAATGT+TGG | + | chr4_4:73129503-73129522 | None:intergenic | 35.0% | |
| GTACAGGATTGGAAATTATG+GGG | - | chr4_4:73129510-73129529 | Msa0701720:CDS | 35.0% | |
| TGGAAACAAGAGTTCCACAA+AGG | - | chr4_4:73127518-73127537 | Msa0701720:CDS | 40.0% | |
| ! | GTTGAGGTTGATCATCAACA+TGG | + | chr4_4:73127581-73127600 | None:intergenic | 40.0% |
| !!! | TTTTCAAGAGCATCAAGCAC+TGG | + | chr4_4:73127651-73127670 | None:intergenic | 40.0% |
| CGTCTCAACATTGCTAAAGA+GGG | - | chr4_4:73127678-73127697 | Msa0701720:CDS | 40.0% | |
| ! | CTTCCAACCATTGTTGTTGT+TGG | - | chr4_4:73127708-73127727 | Msa0701720:CDS | 40.0% |
| TCTCCAACAACAACAATGGT+TGG | + | chr4_4:73127714-73127733 | None:intergenic | 40.0% | |
| GTTGTTGGAGATCAATCATC+TGG | - | chr4_4:73127723-73127742 | Msa0701720:CDS | 40.0% | |
| AGTGTCCTTGAATCATTAGC+TGG | - | chr4_4:73127753-73127772 | Msa0701720:CDS | 40.0% | |
| GTGGACAAGGAATTTGTACA+AGG | - | chr4_4:73127790-73127809 | Msa0701720:CDS | 40.0% | |
| ! | TTTTGCAGCCTCATAACCAA+AGG | + | chr4_4:73127819-73127838 | None:intergenic | 40.0% |
| TGCTATAAATACAGCCACTG+AGG | - | chr4_4:73127917-73127936 | Msa0701720:CDS | 40.0% | |
| TGGAGTTCCTGATCTTACTA+TGG | - | chr4_4:73128001-73128020 | Msa0701720:CDS | 40.0% | |
| CTTACTATGGTTGATCTTCC+AGG | - | chr4_4:73128014-73128033 | Msa0701720:CDS | 40.0% | |
| ATAACTCGTGTTCCTGTTCA+TGG | - | chr4_4:73128038-73128057 | Msa0701720:CDS | 40.0% | |
| !! | TTATCAGGTTGACCATGAAC+AGG | + | chr4_4:73128053-73128072 | None:intergenic | 40.0% |
| AAGGCTGATAAATCTCCTGA+AGG | - | chr4_4:73128236-73128255 | Msa0701720:CDS | 40.0% | |
| TAAATCTCCTGAAGGTTTGC+TGG | - | chr4_4:73128244-73128263 | Msa0701720:CDS | 40.0% | |
| ACAGCTGACGATGTTAACAT+TGG | - | chr4_4:73128275-73128294 | Msa0701720:CDS | 40.0% | |
| ! | GACGATGTTAACATTGGTCT+TGG | - | chr4_4:73128281-73128300 | Msa0701720:CDS | 40.0% |
| AAGAGTCTTACGAAGATGCA+AGG | - | chr4_4:73128333-73128352 | Msa0701720:CDS | 40.0% | |
| ! | ACAAGCTTTTGAGCCAAAAC+AGG | + | chr4_4:73128428-73128447 | None:intergenic | 40.0% |
| GATTTGCAGAAAAGCTGACA+TGG | + | chr4_4:73128576-73128595 | None:intergenic | 40.0% | |
| TGCCACTAAGGATTTCCTAA+TGG | - | chr4_4:73128745-73128764 | Msa0701720:CDS | 40.0% | |
| CTCCATTAGGAAATCCTTAG+TGG | + | chr4_4:73128750-73128769 | None:intergenic | 40.0% | |
| CACTAAGGATTTCCTAATGG+AGG | - | chr4_4:73128748-73128767 | Msa0701720:CDS | 40.0% | |
| GGAGGAAATCAAAGTTCTTG+AGG | - | chr4_4:73128766-73128785 | Msa0701720:CDS | 40.0% | |
| GCAGTTCTTGGCATGAAATT+CGG | + | chr4_4:73128812-73128831 | None:intergenic | 40.0% | |
| AAGGTCAGAAAAGCAGTTCT+TGG | + | chr4_4:73128824-73128843 | None:intergenic | 40.0% | |
| TATACTCCTCCAAGTACTCA+GGG | + | chr4_4:73129084-73129103 | None:intergenic | 40.0% | |
| TTATACTCCTCCAAGTACTC+AGG | + | chr4_4:73129085-73129104 | None:intergenic | 40.0% | |
| ! | TCAAGTACTGTGAAGCTGAA+AGG | - | chr4_4:73129163-73129182 | Msa0701720:CDS | 40.0% |
| TAAGCCTGATTCAACATGTG+TGG | + | chr4_4:73129226-73129245 | None:intergenic | 40.0% | |
| GAACTGTTATCAGCAAATGG+TGG | - | chr4_4:73129376-73129395 | Msa0701720:CDS | 40.0% | |
| AGGAGTCTCCTTCAATATCA+GGG | - | chr4_4:73129419-73129438 | Msa0701720:CDS | 40.0% | |
| TGTCTCTTCCCTGATATTGA+AGG | + | chr4_4:73129430-73129449 | None:intergenic | 40.0% | |
| GCCAACATTATGTACAGGAT+TGG | - | chr4_4:73129499-73129518 | Msa0701720:CDS | 40.0% | |
| TGGAAACAAGAGTTCCACAA+AGG | - | chr4_4:73127518-73127537 | Msa0701720:CDS | 40.0% | |
| ! | GTTGAGGTTGATCATCAACA+TGG | + | chr4_4:73127581-73127600 | None:intergenic | 40.0% |
| !!! | TTTTCAAGAGCATCAAGCAC+TGG | + | chr4_4:73127651-73127670 | None:intergenic | 40.0% |
| CGTCTCAACATTGCTAAAGA+GGG | - | chr4_4:73127678-73127697 | Msa0701720:CDS | 40.0% | |
| ! | CTTCCAACCATTGTTGTTGT+TGG | - | chr4_4:73127708-73127727 | Msa0701720:CDS | 40.0% |
| TCTCCAACAACAACAATGGT+TGG | + | chr4_4:73127714-73127733 | None:intergenic | 40.0% | |
| GTTGTTGGAGATCAATCATC+TGG | - | chr4_4:73127723-73127742 | Msa0701720:CDS | 40.0% | |
| AGTGTCCTTGAATCATTAGC+TGG | - | chr4_4:73127753-73127772 | Msa0701720:CDS | 40.0% | |
| GTGGACAAGGAATTTGTACA+AGG | - | chr4_4:73127790-73127809 | Msa0701720:CDS | 40.0% | |
| ! | TTTTGCAGCCTCATAACCAA+AGG | + | chr4_4:73127819-73127838 | None:intergenic | 40.0% |
| TGCTATAAATACAGCCACTG+AGG | - | chr4_4:73127917-73127936 | Msa0701720:CDS | 40.0% | |
| TGGAGTTCCTGATCTTACTA+TGG | - | chr4_4:73128001-73128020 | Msa0701720:CDS | 40.0% | |
| CTTACTATGGTTGATCTTCC+AGG | - | chr4_4:73128014-73128033 | Msa0701720:CDS | 40.0% | |
| ATAACTCGTGTTCCTGTTCA+TGG | - | chr4_4:73128038-73128057 | Msa0701720:CDS | 40.0% | |
| !! | TTATCAGGTTGACCATGAAC+AGG | + | chr4_4:73128053-73128072 | None:intergenic | 40.0% |
| AAGGCTGATAAATCTCCTGA+AGG | - | chr4_4:73128236-73128255 | Msa0701720:CDS | 40.0% | |
| TAAATCTCCTGAAGGTTTGC+TGG | - | chr4_4:73128244-73128263 | Msa0701720:CDS | 40.0% | |
| ACAGCTGACGATGTTAACAT+TGG | - | chr4_4:73128275-73128294 | Msa0701720:CDS | 40.0% | |
| ! | GACGATGTTAACATTGGTCT+TGG | - | chr4_4:73128281-73128300 | Msa0701720:CDS | 40.0% |
| AAGAGTCTTACGAAGATGCA+AGG | - | chr4_4:73128333-73128352 | Msa0701720:CDS | 40.0% | |
| ! | ACAAGCTTTTGAGCCAAAAC+AGG | + | chr4_4:73128428-73128447 | None:intergenic | 40.0% |
| GATTTGCAGAAAAGCTGACA+TGG | + | chr4_4:73128576-73128595 | None:intergenic | 40.0% | |
| TGCCACTAAGGATTTCCTAA+TGG | - | chr4_4:73128745-73128764 | Msa0701720:CDS | 40.0% | |
| CTCCATTAGGAAATCCTTAG+TGG | + | chr4_4:73128750-73128769 | None:intergenic | 40.0% | |
| CACTAAGGATTTCCTAATGG+AGG | - | chr4_4:73128748-73128767 | Msa0701720:CDS | 40.0% | |
| GGAGGAAATCAAAGTTCTTG+AGG | - | chr4_4:73128766-73128785 | Msa0701720:CDS | 40.0% | |
| GCAGTTCTTGGCATGAAATT+CGG | + | chr4_4:73128812-73128831 | None:intergenic | 40.0% | |
| AAGGTCAGAAAAGCAGTTCT+TGG | + | chr4_4:73128824-73128843 | None:intergenic | 40.0% | |
| TATACTCCTCCAAGTACTCA+GGG | + | chr4_4:73129084-73129103 | None:intergenic | 40.0% | |
| TTATACTCCTCCAAGTACTC+AGG | + | chr4_4:73129085-73129104 | None:intergenic | 40.0% | |
| ! | TCAAGTACTGTGAAGCTGAA+AGG | - | chr4_4:73129163-73129182 | Msa0701720:CDS | 40.0% |
| TAAGCCTGATTCAACATGTG+TGG | + | chr4_4:73129226-73129245 | None:intergenic | 40.0% | |
| GAACTGTTATCAGCAAATGG+TGG | - | chr4_4:73129376-73129395 | Msa0701720:CDS | 40.0% | |
| AGGAGTCTCCTTCAATATCA+GGG | - | chr4_4:73129419-73129438 | Msa0701720:CDS | 40.0% | |
| TGTCTCTTCCCTGATATTGA+AGG | + | chr4_4:73129430-73129449 | None:intergenic | 40.0% | |
| GCCAACATTATGTACAGGAT+TGG | - | chr4_4:73129499-73129518 | Msa0701720:CDS | 40.0% | |
| GGTGCAATAGATAGAGGTTG+AGG | + | chr4_4:73127597-73127616 | None:intergenic | 45.0% | |
| GCGTCTCAACATTGCTAAAG+AGG | - | chr4_4:73127677-73127696 | Msa0701720:CDS | 45.0% | |
| GTACAAATTCCTTGTCCACG+TGG | + | chr4_4:73127789-73127808 | None:intergenic | 45.0% | |
| !! | CAAGGGTACCTTTGGTTATG+AGG | - | chr4_4:73127808-73127827 | Msa0701720:CDS | 45.0% |
| TATCAAAGTCAGTGGGGTGT+TGG | + | chr4_4:73127970-73127989 | None:intergenic | 45.0% | |
| ACAGGAACACGAGTTATACC+TGG | + | chr4_4:73128035-73128054 | None:intergenic | 45.0% | |
| GCCTGCTAATTTATCCTCAC+TGG | - | chr4_4:73128544-73128563 | Msa0701720:CDS | 45.0% | |
| GCCAGTGAGGATAAATTAGC+AGG | + | chr4_4:73128548-73128567 | None:intergenic | 45.0% | |
| AGCTTGAAGCACATGCTGAA+TGG | + | chr4_4:73129026-73129045 | None:intergenic | 45.0% | |
| TGTGCTTCAAGCTGTTGAGA+TGG | - | chr4_4:73129033-73129052 | Msa0701720:CDS | 45.0% | |
| CACATGTAACCCTGAGTACT+TGG | - | chr4_4:73129072-73129091 | Msa0701720:CDS | 45.0% | |
| ATGTAACCCTGAGTACTTGG+AGG | - | chr4_4:73129075-73129094 | Msa0701720:CDS | 45.0% | |
| ! | GGAGGAGTATAACAAGCTGA+TGG | - | chr4_4:73129093-73129112 | Msa0701720:CDS | 45.0% |
| ! | ACTGTGAAGCTGAAAGGTGT+TGG | - | chr4_4:73129169-73129188 | Msa0701720:CDS | 45.0% |
| AGGCCAGATTGACAGCTTAT+TGG | - | chr4_4:73129254-73129273 | Msa0701720:CDS | 45.0% | |
| ATTGGAAAATTGTGCTCCGG+AGG | - | chr4_4:73129272-73129291 | Msa0701720:CDS | 45.0% | |
| CTGTTATCAGCAAATGGTGG+TGG | - | chr4_4:73129379-73129398 | Msa0701720:CDS | 45.0% | |
| GAGGAGTCTCCTTCAATATC+AGG | - | chr4_4:73129418-73129437 | Msa0701720:CDS | 45.0% | |
| GAAAGAAAGCAAAGAGACCG+TGG | - | chr4_4:73129477-73129496 | Msa0701720:CDS | 45.0% | |
| CCTGTACATAATGTTGGCCA+CGG | + | chr4_4:73129497-73129516 | None:intergenic | 45.0% | |
| GGTGCAATAGATAGAGGTTG+AGG | + | chr4_4:73127597-73127616 | None:intergenic | 45.0% | |
| GCGTCTCAACATTGCTAAAG+AGG | - | chr4_4:73127677-73127696 | Msa0701720:CDS | 45.0% | |
| GTACAAATTCCTTGTCCACG+TGG | + | chr4_4:73127789-73127808 | None:intergenic | 45.0% | |
| !! | CAAGGGTACCTTTGGTTATG+AGG | - | chr4_4:73127808-73127827 | Msa0701720:CDS | 45.0% |
| TATCAAAGTCAGTGGGGTGT+TGG | + | chr4_4:73127970-73127989 | None:intergenic | 45.0% | |
| ACAGGAACACGAGTTATACC+TGG | + | chr4_4:73128035-73128054 | None:intergenic | 45.0% | |
| GCCTGCTAATTTATCCTCAC+TGG | - | chr4_4:73128544-73128563 | Msa0701720:CDS | 45.0% | |
| GCCAGTGAGGATAAATTAGC+AGG | + | chr4_4:73128548-73128567 | None:intergenic | 45.0% | |
| AGCTTGAAGCACATGCTGAA+TGG | + | chr4_4:73129026-73129045 | None:intergenic | 45.0% | |
| TGTGCTTCAAGCTGTTGAGA+TGG | - | chr4_4:73129033-73129052 | Msa0701720:CDS | 45.0% | |
| CACATGTAACCCTGAGTACT+TGG | - | chr4_4:73129072-73129091 | Msa0701720:CDS | 45.0% | |
| ATGTAACCCTGAGTACTTGG+AGG | - | chr4_4:73129075-73129094 | Msa0701720:CDS | 45.0% | |
| ! | GGAGGAGTATAACAAGCTGA+TGG | - | chr4_4:73129093-73129112 | Msa0701720:CDS | 45.0% |
| ! | ACTGTGAAGCTGAAAGGTGT+TGG | - | chr4_4:73129169-73129188 | Msa0701720:CDS | 45.0% |
| AGGCCAGATTGACAGCTTAT+TGG | - | chr4_4:73129254-73129273 | Msa0701720:CDS | 45.0% | |
| ATTGGAAAATTGTGCTCCGG+AGG | - | chr4_4:73129272-73129291 | Msa0701720:CDS | 45.0% | |
| CTGTTATCAGCAAATGGTGG+TGG | - | chr4_4:73129379-73129398 | Msa0701720:CDS | 45.0% | |
| GAGGAGTCTCCTTCAATATC+AGG | - | chr4_4:73129418-73129437 | Msa0701720:CDS | 45.0% | |
| GAAAGAAAGCAAAGAGACCG+TGG | - | chr4_4:73129477-73129496 | Msa0701720:CDS | 45.0% | |
| CCTGTACATAATGTTGGCCA+CGG | + | chr4_4:73129497-73129516 | None:intergenic | 45.0% | |
| GCTCTGGCTGTGGAAGTAAA+TGG | + | chr4_4:73127842-73127861 | None:intergenic | 50.0% | |
| !! | TCCACAGCCAGAGCTTGTTT+TGG | - | chr4_4:73127848-73127867 | Msa0701720:CDS | 50.0% |
| ! | TCCAAAACAAGCTCTGGCTG+TGG | + | chr4_4:73127852-73127871 | None:intergenic | 50.0% |
| !! | TGGGGTGTTGGAAATCCCTT+TGG | + | chr4_4:73127958-73127977 | None:intergenic | 50.0% |
| !! | AACGCTTGCTGTCGTGACAA+AGG | - | chr4_4:73128217-73128236 | Msa0701720:CDS | 50.0% |
| !! | TCCTGAAGGTTTGCTGGAGA+AGG | - | chr4_4:73128250-73128269 | Msa0701720:CDS | 50.0% |
| ACCTTCTCCAGCAAACCTTC+AGG | + | chr4_4:73128254-73128273 | None:intergenic | 50.0% | |
| AGTGTCACACACTTCTGTCC+AGG | - | chr4_4:73128378-73128397 | Msa0701720:CDS | 50.0% | |
| ! | GGCTACTAGTTTGCATGAGC+TGG | - | chr4_4:73128514-73128533 | Msa0701720:CDS | 50.0% |
| !! | CAAATGGTGGTGGTGTTGAG+AGG | - | chr4_4:73129389-73129408 | Msa0701720:CDS | 50.0% |
| GGAAGAGACAGAAGTTGAGC+AGG | - | chr4_4:73129440-73129459 | Msa0701720:CDS | 50.0% | |
| CCGTGGCCAACATTATGTAC+AGG | - | chr4_4:73129494-73129513 | Msa0701720:CDS | 50.0% | |
| GCTCTGGCTGTGGAAGTAAA+TGG | + | chr4_4:73127842-73127861 | None:intergenic | 50.0% | |
| !! | TCCACAGCCAGAGCTTGTTT+TGG | - | chr4_4:73127848-73127867 | Msa0701720:CDS | 50.0% |
| ! | TCCAAAACAAGCTCTGGCTG+TGG | + | chr4_4:73127852-73127871 | None:intergenic | 50.0% |
| !! | TGGGGTGTTGGAAATCCCTT+TGG | + | chr4_4:73127958-73127977 | None:intergenic | 50.0% |
| !! | AACGCTTGCTGTCGTGACAA+AGG | - | chr4_4:73128217-73128236 | Msa0701720:CDS | 50.0% |
| !! | TCCTGAAGGTTTGCTGGAGA+AGG | - | chr4_4:73128250-73128269 | Msa0701720:CDS | 50.0% |
| ACCTTCTCCAGCAAACCTTC+AGG | + | chr4_4:73128254-73128273 | None:intergenic | 50.0% | |
| AGTGTCACACACTTCTGTCC+AGG | - | chr4_4:73128378-73128397 | Msa0701720:CDS | 50.0% | |
| ! | GGCTACTAGTTTGCATGAGC+TGG | - | chr4_4:73128514-73128533 | Msa0701720:CDS | 50.0% |
| !! | CAAATGGTGGTGGTGTTGAG+AGG | - | chr4_4:73129389-73129408 | Msa0701720:CDS | 50.0% |
| GGAAGAGACAGAAGTTGAGC+AGG | - | chr4_4:73129440-73129459 | Msa0701720:CDS | 50.0% | |
| CCGTGGCCAACATTATGTAC+AGG | - | chr4_4:73129494-73129513 | Msa0701720:CDS | 50.0% | |
| ATCAGCTTGCCACGTGGACA+AGG | - | chr4_4:73127777-73127796 | Msa0701720:CDS | 55.0% | |
| !! | AGCTTGCTGGCACTGCCAAA+GGG | - | chr4_4:73127940-73127959 | Msa0701720:CDS | 55.0% |
| TGACATGGCATCAGCCAGTG+AGG | + | chr4_4:73128561-73128580 | None:intergenic | 55.0% | |
| ! | TGGTGTTGAGAGGCTGCTTG+AGG | - | chr4_4:73129399-73129418 | Msa0701720:CDS | 55.0% |
| ATCAGCTTGCCACGTGGACA+AGG | - | chr4_4:73127777-73127796 | Msa0701720:CDS | 55.0% | |
| !! | AGCTTGCTGGCACTGCCAAA+GGG | - | chr4_4:73127940-73127959 | Msa0701720:CDS | 55.0% |
| TGACATGGCATCAGCCAGTG+AGG | + | chr4_4:73128561-73128580 | None:intergenic | 55.0% | |
| ! | TGGTGTTGAGAGGCTGCTTG+AGG | - | chr4_4:73129399-73129418 | Msa0701720:CDS | 55.0% |
| GCTGGTATCAGCTTGCCACG+TGG | - | chr4_4:73127771-73127790 | Msa0701720:CDS | 60.0% | |
| ACAGCCACTGAGGAGCTTGC+TGG | - | chr4_4:73127927-73127946 | Msa0701720:CDS | 60.0% | |
| AGTGCCAGCAAGCTCCTCAG+TGG | + | chr4_4:73127934-73127953 | None:intergenic | 60.0% | |
| !! | GAGCTTGCTGGCACTGCCAA+AGG | - | chr4_4:73127939-73127958 | Msa0701720:CDS | 60.0% |
| GCTGGTATCAGCTTGCCACG+TGG | - | chr4_4:73127771-73127790 | Msa0701720:CDS | 60.0% | |
| ACAGCCACTGAGGAGCTTGC+TGG | - | chr4_4:73127927-73127946 | Msa0701720:CDS | 60.0% | |
| AGTGCCAGCAAGCTCCTCAG+TGG | + | chr4_4:73127934-73127953 | None:intergenic | 60.0% | |
| !! | GAGCTTGCTGGCACTGCCAA+AGG | - | chr4_4:73127939-73127958 | Msa0701720:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 73127510 | 73129540 | 73127510 | ID=Msa0701720;Name=Msa0701720 |
| chr4_4 | mRNA | 73127510 | 73129540 | 73127510 | ID=Msa0701720-mRNA-1;Parent=Msa0701720;Name=Msa0701720-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|-1|0|1|-1|1|1|0|676 |
| chr4_4 | exon | 73127510 | 73129540 | 73127510 | ID=Msa0701720-mRNA-1:exon:22413;Parent=Msa0701720-mRNA-1 |
| chr4_4 | CDS | 73127510 | 73129540 | 73127510 | ID=Msa0701720-mRNA-1:cds;Parent=Msa0701720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
