Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024610 | XP_013468026.1 | 97.068 | 648 | 19 | 0 | 1 | 648 | 1 | 648 | 0.0 | 1308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024610 | Msa0163720 | 0.805740 | 1.153588e-49 | -8.615850e-47 |
| Msa0024610 | Msa0355170 | 0.848439 | 6.123370e-60 | -8.615850e-47 |
| Msa0024610 | Msa0355180 | 0.845970 | 2.913278e-59 | -8.615850e-47 |
| Msa0024610 | Msa0355190 | 0.868495 | 6.258247e-66 | -8.615850e-47 |
| Msa0024610 | Msa0402240 | 0.848615 | 5.476683e-60 | -8.615850e-47 |
| Msa0024610 | Msa0402250 | 0.855693 | 5.316949e-62 | -8.615850e-47 |
| Msa0024610 | Msa0708900 | 0.853822 | 1.853691e-61 | -8.615850e-47 |
| Msa0024610 | Msa0708910 | 0.838363 | 3.007221e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024610 | MtrunA17_Chr1g0178981 | 97.068 | 648 | 19 | 0 | 1 | 648 | 1 | 648 | 0.0 | 1308 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024610 | AT1G19485.1 | 40.433 | 601 | 242 | 19 | 57 | 647 | 3 | 497 | 1.84e-119 | 375 |
| Msa0024610 | AT1G19485.2 | 40.433 | 601 | 242 | 19 | 57 | 647 | 3 | 497 | 1.84e-119 | 375 |
Find 164 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTGGTTCTCACAATT+TGG | 0.152126 | 1_1:+47250406 | None:intergenic |
| TGGTTCATCTTATCACAAAA+TGG | 0.221693 | 1_1:-47250848 | Msa0024610:CDS |
| TATGGTGTCTTCTAAATATC+AGG | 0.232318 | 1_1:-47250792 | Msa0024610:CDS |
| CCTCATGATTATTTACTTGC+TGG | 0.237869 | 1_1:-47247464 | Msa0024610:CDS |
| AATAATGGCCTACTTGTATC+TGG | 0.238881 | 1_1:+47250112 | None:intergenic |
| TGTATTCGCAGCAGCTTTCT+TGG | 0.251698 | 1_1:+47250270 | None:intergenic |
| ACCTTTCACAAAAGGGATTA+AGG | 0.259506 | 1_1:-47253809 | Msa0024610:five_prime_UTR |
| GTATGCAGAAGCAGCTTTCT+TGG | 0.268262 | 1_1:+47250198 | None:intergenic |
| ACTCTCTTGTTTGCAATTGC+AGG | 0.278666 | 1_1:+47253712 | None:intergenic |
| GATCATTCACATCAGTCTTT+TGG | 0.281028 | 1_1:+47246103 | None:intergenic |
| GCATTCTTTCCCTTTGTATT+CGG | 0.294913 | 1_1:+47250220 | None:intergenic |
| ATTAGGTTTACTTACGGAAT+TGG | 0.296469 | 1_1:-47252791 | Msa0024610:CDS |
| GGGCTATCTTGCTGTCTTGT+TGG | 0.306280 | 1_1:-47249894 | Msa0024610:CDS |
| GGCTATCTTGCTGTCTTGTT+GGG | 0.307911 | 1_1:-47249893 | Msa0024610:CDS |
| AATATCCATCTAAAAGCATT+AGG | 0.316447 | 1_1:-47252808 | Msa0024610:CDS |
| CAGGGTTTGAATATCAGTTC+TGG | 0.319518 | 1_1:-47253751 | Msa0024610:five_prime_UTR |
| AAAATGGGTGCCTCACTTAC+TGG | 0.325896 | 1_1:-47250832 | Msa0024610:CDS |
| TTCTTCTTCCCCACAGAGTT+TGG | 0.336068 | 1_1:+47253450 | None:intergenic |
| AACATTGAGCATTTGAATAC+AGG | 0.343917 | 1_1:+47248523 | None:intergenic |
| ATTTCTCCAGATGTAGTTCC+TGG | 0.344586 | 1_1:-47250346 | Msa0024610:CDS |
| GAACAGTAAGAGGAACAAAT+TGG | 0.352749 | 1_1:+47250392 | None:intergenic |
| GAAATAAATTCAGCTGAATC+TGG | 0.353877 | 1_1:+47250364 | None:intergenic |
| GCAGAGGTGCTGTGCAAATA+TGG | 0.367593 | 1_1:-47250810 | Msa0024610:CDS |
| TAAATAGTGTGGCAATAGTT+AGG | 0.374286 | 1_1:+47253668 | None:intergenic |
| CTTGTTGGGCAATGGATCTC+TGG | 0.375077 | 1_1:-47249879 | Msa0024610:CDS |
| TTCTCACACTGAATCAATAA+TGG | 0.377014 | 1_1:+47250097 | None:intergenic |
| ATACTTGGATTCTTGAGGTT+TGG | 0.380840 | 1_1:+47252505 | None:intergenic |
| GCCCATGCAACTGTTCTAAT+AGG | 0.389486 | 1_1:+47246163 | None:intergenic |
| GTAGGTTGGATATTAATCAT+AGG | 0.390058 | 1_1:-47250150 | Msa0024610:CDS |
| GGGCATTTACCTTTCACAAA+AGG | 0.395838 | 1_1:-47253817 | Msa0024610:five_prime_UTR |
| GCGTTGTTTATCAACAGAAC+AGG | 0.403768 | 1_1:-47253787 | Msa0024610:five_prime_UTR |
| ACAAAGCCTATACTTTGTTT+CGG | 0.415181 | 1_1:-47246199 | Msa0024610:CDS |
| GGCATTTACCTTTCACAAAA+GGG | 0.424513 | 1_1:-47253816 | Msa0024610:five_prime_UTR |
| TTAGGTTTACTTACGGAATT+GGG | 0.426191 | 1_1:-47252790 | Msa0024610:CDS |
| ATATCAAACAAAGAAACCTT+AGG | 0.426697 | 1_1:+47253511 | None:intergenic |
| GATGCTTGAGGTTCCAATAC+AGG | 0.430718 | 1_1:+47250046 | None:intergenic |
| AGGGTTTGAATATCAGTTCT+GGG | 0.431046 | 1_1:-47253750 | Msa0024610:five_prime_UTR |
| GCTGTTGCTGCTCATCCGCC+TGG | 0.432574 | 1_1:-47250868 | Msa0024610:CDS |
| CTTGCTGTCTTGTTGGGCAA+TGG | 0.437681 | 1_1:-47249887 | Msa0024610:CDS |
| GAACTGCCAGGAACTACATC+TGG | 0.439083 | 1_1:+47250340 | None:intergenic |
| GTTCTGTATGGGCATTAGAT+TGG | 0.440759 | 1_1:-47252291 | Msa0024610:CDS |
| ACCACATGGTAGCCCTGTAT+TGG | 0.442858 | 1_1:-47250059 | Msa0024610:CDS |
| GCATCTGGTAGTGTCTCAAA+TGG | 0.442876 | 1_1:-47250532 | Msa0024610:CDS |
| AGGTGGCATGGGATGTCAAA+TGG | 0.446867 | 1_1:-47249958 | Msa0024610:CDS |
| TCACATTTAATTGAACAATC+AGG | 0.451414 | 1_1:+47252247 | None:intergenic |
| TTACTTGCTGGCTGCCATGA+TGG | 0.453345 | 1_1:-47247452 | Msa0024610:CDS |
| AGCCTATACTTTGTTTCGGT+GGG | 0.453635 | 1_1:-47246195 | Msa0024610:CDS |
| TGCAAAAGGAGGAGCAACTT+GGG | 0.454385 | 1_1:-47252532 | Msa0024610:CDS |
| TCAGGCTCCCCATGCATCCT+AGG | 0.455090 | 1_1:+47252265 | None:intergenic |
| TTCATCTGCCACTGTTCCTA+AGG | 0.455578 | 1_1:-47252711 | Msa0024610:intron |
| ATTATCACTAACCCTTCAAA+AGG | 0.457036 | 1_1:+47246139 | None:intergenic |
| CGAGAATTTCTTTGAAGACA+TGG | 0.460588 | 1_1:-47253482 | Msa0024610:CDS |
| AAAAGCATTAGGTTTACTTA+CGG | 0.463447 | 1_1:-47252797 | Msa0024610:CDS |
| CCACCTTTCCATTATGAGCT+AGG | 0.467563 | 1_1:+47249975 | None:intergenic |
| ATGCAAAAGGAGGAGCAACT+TGG | 0.467583 | 1_1:-47252533 | Msa0024610:CDS |
| TCCTCATGCAAGCATCGAAT+GGG | 0.467596 | 1_1:-47249914 | Msa0024610:CDS |
| GTGTCATGCCTAGCTCATAA+TGG | 0.467799 | 1_1:-47249983 | Msa0024610:CDS |
| ATCATATCTCCCCGGGAAGA+AGG | 0.467886 | 1_1:-47250752 | Msa0024610:CDS |
| GTCCACCTAGGTAAAGTAAA+GGG | 0.472023 | 1_1:-47253837 | Msa0024610:five_prime_UTR |
| GCTCTCAGTGCATGAGGAAG+AGG | 0.476909 | 1_1:+47248595 | None:intergenic |
| GGTTCATCTTATCACAAAAT+GGG | 0.477171 | 1_1:-47250847 | Msa0024610:CDS |
| GGGCATTAGATTGGTGTCCT+AGG | 0.483270 | 1_1:-47252282 | Msa0024610:CDS |
| TCTGGAAGTTGAACAGTAAG+AGG | 0.486423 | 1_1:+47250382 | None:intergenic |
| CTCTTTGATATTAAATAGTG+TGG | 0.488495 | 1_1:+47253657 | None:intergenic |
| CTATCCACTGCTATTACAGT+TGG | 0.488965 | 1_1:+47250580 | None:intergenic |
| TTCCCCACAGAGTTTGGCAA+TGG | 0.498095 | 1_1:+47253456 | None:intergenic |
| TCTTGTTGCAAGAAGTAGGT+TGG | 0.499166 | 1_1:-47250164 | Msa0024610:CDS |
| ATTGATTCAGTGTGAGAATG+AGG | 0.501894 | 1_1:-47250092 | Msa0024610:CDS |
| TGAATGTTGGAGGTTCTGTA+TGG | 0.503920 | 1_1:-47252303 | Msa0024610:CDS |
| ACAAATCGATAGAAATAAAG+AGG | 0.505265 | 1_1:-47250696 | Msa0024610:CDS |
| TGTCCACCTAGGTAAAGTAA+AGG | 0.506559 | 1_1:-47253838 | Msa0024610:five_prime_UTR |
| TTCCTATTAGAACAGTTGCA+TGG | 0.511742 | 1_1:-47246165 | Msa0024610:CDS |
| CTCATAATGGAAAGGTGGCA+TGG | 0.517043 | 1_1:-47249970 | Msa0024610:CDS |
| TATCAAACAAAGAAACCTTA+GGG | 0.521010 | 1_1:+47253512 | None:intergenic |
| TAGGTTGGATATTAATCATA+GGG | 0.524008 | 1_1:-47250149 | Msa0024610:CDS |
| AAACTCTTGTTGCAAGAAGT+AGG | 0.524383 | 1_1:-47250168 | Msa0024610:CDS |
| AAGCCTATACTTTGTTTCGG+TGG | 0.531447 | 1_1:-47246196 | Msa0024610:CDS |
| CTTAGGGTTAGCACCACTGC+TGG | 0.532612 | 1_1:+47253528 | None:intergenic |
| ATTGGTGTCCTAGGATGCAT+GGG | 0.532952 | 1_1:-47252273 | Msa0024610:CDS |
| TTCTTTCTAGGCCTTCCTCT+AGG | 0.533374 | 1_1:+47250673 | None:intergenic |
| CAAATTATACCGTTCCATCA+TGG | 0.534327 | 1_1:+47247438 | None:intergenic |
| TTCCTCATGCAAGCATCGAA+TGG | 0.535078 | 1_1:-47249915 | Msa0024610:CDS |
| GGGACCAAGTACATAGCATC+TGG | 0.536684 | 1_1:-47250547 | Msa0024610:CDS |
| ACTACCAGATGCTATGTACT+TGG | 0.537317 | 1_1:+47250543 | None:intergenic |
| GATTGGTGTCCTAGGATGCA+TGG | 0.541625 | 1_1:-47252274 | Msa0024610:CDS |
| CAGCAGTGGTGCTAACCCTA+AGG | 0.543146 | 1_1:-47253527 | Msa0024610:CDS |
| TCCTATTAGAACAGTTGCAT+GGG | 0.543628 | 1_1:-47246164 | Msa0024610:CDS |
| AAACCATACTTGGATTCTTG+AGG | 0.544459 | 1_1:+47252500 | None:intergenic |
| TGCGAATACAAAGGGAAAGA+AGG | 0.548170 | 1_1:-47250257 | Msa0024610:CDS |
| AGAGACTTTGTGATGAATGT+TGG | 0.551861 | 1_1:-47252316 | Msa0024610:CDS |
| AAAGCTGCTGCGAATACAAA+GGG | 0.552131 | 1_1:-47250265 | Msa0024610:CDS |
| AAAGCTGCTCCGAATACAAA+GGG | 0.553544 | 1_1:-47250229 | Msa0024610:CDS |
| ATAATGGCCTACTTGTATCT+GGG | 0.555195 | 1_1:+47250113 | None:intergenic |
| CATCTGGTAGTGTCTCAAAT+GGG | 0.555891 | 1_1:-47250531 | Msa0024610:CDS |
| TGCTGGCTGCCATGATGGAA+CGG | 0.557319 | 1_1:-47247447 | Msa0024610:intron |
| TTAAATGTGCAGAGAATGGA+AGG | 0.560081 | 1_1:-47252837 | Msa0024610:intron |
| GCTACAGCGGCAAATGATGA+AGG | 0.560213 | 1_1:-47253565 | Msa0024610:CDS |
| GAGAGCAGTTTATACGCAGA+AGG | 0.563777 | 1_1:-47248578 | Msa0024610:CDS |
| GCCTATACTTTGTTTCGGTG+GGG | 0.564923 | 1_1:-47246194 | Msa0024610:CDS |
| AATTCTTCATCTAAATGTGA+TGG | 0.566247 | 1_1:-47246358 | Msa0024610:intron |
| GTTGTAGCCCAGATACAAGT+AGG | 0.566508 | 1_1:-47250120 | Msa0024610:CDS |
| CGTTGTTTATCAACAGAACA+GGG | 0.567059 | 1_1:-47253786 | Msa0024610:five_prime_UTR |
| GACTTTGTGATGAATGTTGG+AGG | 0.568156 | 1_1:-47252313 | Msa0024610:CDS |
| GAAAGCTGCTCCGAATACAA+AGG | 0.568270 | 1_1:-47250230 | Msa0024610:CDS |
| TCCCCACCGAAACAAAGTAT+AGG | 0.572203 | 1_1:+47246193 | None:intergenic |
| AGCAGTTTATACGCAGAAGG+AGG | 0.573083 | 1_1:-47248575 | Msa0024610:CDS |
| TGCTGATGATTCTGCTACAG+CGG | 0.574927 | 1_1:-47253578 | Msa0024610:CDS |
| ACACCATTGCCAAACTCTGT+GGG | 0.575153 | 1_1:-47253459 | Msa0024610:CDS |
| AGCAAGTAAATAATCATGAG+GGG | 0.577811 | 1_1:+47247466 | None:intergenic |
| AAATAAAGAGGCCTAGAGGA+AGG | 0.580422 | 1_1:-47250684 | Msa0024610:CDS |
| TGCCCTTTACTTTACCTAGG+TGG | 0.580871 | 1_1:+47253835 | None:intergenic |
| TGATGTTCATCAGAACTGCC+AGG | 0.583511 | 1_1:+47250328 | None:intergenic |
| GGTGCCTCACTTACTGGCAG+AGG | 0.584837 | 1_1:-47250826 | Msa0024610:CDS |
| ACTGACCACTCCACTGTCAG+TGG | 0.585703 | 1_1:+47247494 | None:intergenic |
| TCATAATGGAAAGGTGGCAT+GGG | 0.586605 | 1_1:-47249969 | Msa0024610:CDS |
| AAGAAGTATCATATCTCCCC+GGG | 0.588430 | 1_1:-47250759 | Msa0024610:CDS |
| CAGCAAGTAAATAATCATGA+GGG | 0.589131 | 1_1:+47247465 | None:intergenic |
| GAATCCAACTGTAATAGCAG+TGG | 0.589763 | 1_1:-47250584 | Msa0024610:CDS |
| GAAAGCTGCTGCGAATACAA+AGG | 0.590265 | 1_1:-47250266 | Msa0024610:CDS |
| CAGTGGATAGTACAAATTGT+GGG | 0.590541 | 1_1:-47250567 | Msa0024610:CDS |
| AAACAAGAGAGTGATGGAAG+AGG | 0.590776 | 1_1:-47253701 | Msa0024610:exon |
| ATGGTGTCTTCTAAATATCA+GGG | 0.592032 | 1_1:-47250791 | Msa0024610:CDS |
| GACACCATTGCCAAACTCTG+TGG | 0.595970 | 1_1:-47253460 | Msa0024610:CDS |
| ATGCTTGAGGTTCCAATACA+GGG | 0.598484 | 1_1:+47250047 | None:intergenic |
| TTATTTGAAATTGTCCACCT+AGG | 0.601577 | 1_1:-47253849 | Msa0024610:five_prime_UTR |
| GCAAATGATGAAGGTGGTGG+TGG | 0.602662 | 1_1:-47253556 | Msa0024610:CDS |
| TTGTATCAATTGCAGGTGGG+AGG | 0.602833 | 1_1:-47248620 | Msa0024610:intron |
| TCAGCATAATATGCAAAAGG+AGG | 0.605517 | 1_1:-47252543 | Msa0024610:intron |
| GAAGAAGTATCATATCTCCC+CGG | 0.607569 | 1_1:-47250760 | Msa0024610:CDS |
| AAATGCCCTTTACTTTACCT+AGG | 0.608444 | 1_1:+47253832 | None:intergenic |
| GAGGAATCAAGATTGCTAAG+AGG | 0.614969 | 1_1:+47249932 | None:intergenic |
| CCAGCAAGTAAATAATCATG+AGG | 0.616229 | 1_1:+47247464 | None:intergenic |
| CCTAGCTCATAATGGAAAGG+TGG | 0.620737 | 1_1:-47249975 | Msa0024610:CDS |
| GCAGTTTATACGCAGAAGGA+GGG | 0.621415 | 1_1:-47248574 | Msa0024610:CDS |
| AGCACCTCTGCCAGTAAGTG+AGG | 0.622420 | 1_1:+47250822 | None:intergenic |
| CAGAACTGATATTCAAACCC+TGG | 0.624538 | 1_1:+47253752 | None:intergenic |
| GCAGTGGATAGTACAAATTG+TGG | 0.626003 | 1_1:-47250568 | Msa0024610:CDS |
| ATGCCTAGCTCATAATGGAA+AGG | 0.628963 | 1_1:-47249978 | Msa0024610:CDS |
| TGATTGTTCAATTAAATGTG+AGG | 0.630368 | 1_1:-47252245 | Msa0024610:intron |
| GCCCATTCGATGCTTGCATG+AGG | 0.635290 | 1_1:+47249913 | None:intergenic |
| TAAACTGCTCTCAGTGCATG+AGG | 0.635449 | 1_1:+47248589 | None:intergenic |
| TCACAGCATTCCACTGACAG+TGG | 0.636573 | 1_1:-47247504 | Msa0024610:intron |
| GCTAGGCATGACACAACTCT+AGG | 0.640886 | 1_1:+47249992 | None:intergenic |
| GAATGTTGGAGGTTCTGTAT+GGG | 0.641333 | 1_1:-47252302 | Msa0024610:CDS |
| AATTGCAAACAAGAGAGTGA+TGG | 0.641819 | 1_1:-47253707 | Msa0024610:exon |
| ATGGGACAAGTAGATGCTTG+AGG | 0.647867 | 1_1:+47250034 | None:intergenic |
| GCAAAAGGAGGAGCAACTTG+GGG | 0.648508 | 1_1:-47252531 | Msa0024610:CDS |
| ATAGAAATAAAGAGGCCTAG+AGG | 0.655432 | 1_1:-47250688 | Msa0024610:CDS |
| GCGGCAAATGATGAAGGTGG+TGG | 0.666480 | 1_1:-47253559 | Msa0024610:CDS |
| GCATTCCACTGACAGTGGAG+TGG | 0.668981 | 1_1:-47247499 | Msa0024610:CDS |
| GGTGGTGGTAGTACCAGCAG+TGG | 0.670189 | 1_1:-47253541 | Msa0024610:CDS |
| GCAAGTAAATAATCATGAGG+GGG | 0.677289 | 1_1:+47247467 | None:intergenic |
| TGGCATGGGATGTCAAATGG+AGG | 0.678240 | 1_1:-47249955 | Msa0024610:CDS |
| GACTTGTACCTTAGGAACAG+TGG | 0.679559 | 1_1:+47252703 | None:intergenic |
| CACCATTGCCAAACTCTGTG+GGG | 0.682548 | 1_1:-47253458 | Msa0024610:CDS |
| TGAAACGTGGCAGCTTACAG+AGG | 0.684971 | 1_1:-47248501 | Msa0024610:intron |
| TCCAATACAGGGCTACCATG+TGG | 0.685481 | 1_1:+47250058 | None:intergenic |
| TTTATATGTAGGTTGCTCTG+TGG | 0.688819 | 1_1:-47246393 | Msa0024610:intron |
| GAGGCAAATCATCAACCACA+TGG | 0.705993 | 1_1:-47250073 | Msa0024610:CDS |
| AAATGCTCAATGTTGAAACG+TGG | 0.713740 | 1_1:-47248514 | Msa0024610:CDS |
| TTGGTGTCCTAGGATGCATG+GGG | 0.719461 | 1_1:-47252272 | Msa0024610:CDS |
| TTGTGATAAGATGAACCAGG+CGG | 0.737973 | 1_1:+47250853 | None:intergenic |
| ACAGCGGCAAATGATGAAGG+TGG | 0.745146 | 1_1:-47253562 | Msa0024610:CDS |
| ACAGTGGCAGATGAAAACTG+AGG | 0.800494 | 1_1:+47252719 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAATTGTTTTATATGT+AGG | - | chr1_1:47253575-47253594 | Msa0024610:CDS | 10.0% |
| !!! | TGCATGATATTTTATTATGA+AGG | - | chr1_1:47253390-47253409 | Msa0024610:CDS | 20.0% |
| !! | GATACAGAATTATTACATAA+AGG | + | chr1_1:47253468-47253487 | None:intergenic | 20.0% |
| !! | GAATTATTACATAAAGGTGT+AGG | + | chr1_1:47253462-47253481 | None:intergenic | 25.0% |
| ! | AATTCTTCATCTAAATGTGA+TGG | - | chr1_1:47253621-47253640 | Msa0024610:CDS | 25.0% |
| ! | TTATTTGAAATTGTCCACCT+AGG | - | chr1_1:47246130-47246149 | Msa0024610:exon | 30.0% |
| GGAAGTTCAAAACAAACTAT+AGG | - | chr1_1:47253202-47253221 | Msa0024610:intron | 30.0% | |
| TGTTCTTACGTTTATCTAGT+TGG | - | chr1_1:47253665-47253684 | Msa0024610:CDS | 30.0% | |
| GTTCTTACGTTTATCTAGTT+GGG | - | chr1_1:47253666-47253685 | Msa0024610:CDS | 30.0% | |
| TTCTTACGTTTATCTAGTTG+GGG | - | chr1_1:47253667-47253686 | Msa0024610:CDS | 30.0% | |
| ! | ACAAAGCCTATACTTTGTTT+CGG | - | chr1_1:47253780-47253799 | Msa0024610:five_prime_UTR | 30.0% |
| ATTATCACTAACCCTTCAAA+AGG | + | chr1_1:47253843-47253862 | None:intergenic | 30.0% | |
| ATAGGCCAATCATTTAAGAG+AGG | - | chr1_1:47253220-47253239 | Msa0024610:intron | 35.0% | |
| CCAAACCTCTCTTAAATGAT+TGG | + | chr1_1:47253228-47253247 | None:intergenic | 35.0% | |
| CCAATCATTTAAGAGAGGTT+TGG | - | chr1_1:47253225-47253244 | Msa0024610:intron | 35.0% | |
| CAATACCTGACAGCATATTA+TGG | - | chr1_1:47253272-47253291 | Msa0024610:intron | 35.0% | |
| TTTATATGTAGGTTGCTCTG+TGG | - | chr1_1:47253586-47253605 | Msa0024610:CDS | 35.0% | |
| GATAAACGTAAGAACACGTT+GGG | + | chr1_1:47253661-47253680 | None:intergenic | 35.0% | |
| AGATAAACGTAAGAACACGT+TGG | + | chr1_1:47253662-47253681 | None:intergenic | 35.0% | |
| CAGATAAACAACTGAGTCAA+TGG | + | chr1_1:47253755-47253774 | None:intergenic | 35.0% | |
| TTCCTATTAGAACAGTTGCA+TGG | - | chr1_1:47253814-47253833 | Msa0024610:five_prime_UTR | 35.0% | |
| TCCTATTAGAACAGTTGCAT+GGG | - | chr1_1:47253815-47253834 | Msa0024610:five_prime_UTR | 35.0% | |
| TGTCCACCTAGGTAAAGTAA+AGG | - | chr1_1:47246141-47246160 | Msa0024610:CDS | 40.0% | |
| GTAAGAGAGGTTGACTAGAT+GGG | - | chr1_1:47253160-47253179 | Msa0024610:intron | 40.0% | |
| TGACCTCATGTAGTTGGAAA+AGG | - | chr1_1:47253315-47253334 | Msa0024610:intron | 40.0% | |
| ! | AAGCCTTTTCCAACTACATG+AGG | + | chr1_1:47253321-47253340 | None:intergenic | 40.0% |
| GTTGGAAAAGGCTTAGTTGT+TGG | - | chr1_1:47253327-47253346 | Msa0024610:intron | 40.0% | |
| GAAAAGGCTTAGTTGTTGGT+TGG | - | chr1_1:47253331-47253350 | Msa0024610:intron | 40.0% | |
| TTATCTAGTTGGGGTTGCTA+AGG | - | chr1_1:47253676-47253695 | Msa0024610:CDS | 40.0% | |
| ! | AAGCCTATACTTTGTTTCGG+TGG | - | chr1_1:47253783-47253802 | Msa0024610:five_prime_UTR | 40.0% |
| ! | AGCCTATACTTTGTTTCGGT+GGG | - | chr1_1:47253784-47253803 | Msa0024610:five_prime_UTR | 40.0% |
| GGAGACAGCTTAAGAGACAA+TGG | - | chr1_1:47253181-47253200 | Msa0024610:intron | 45.0% | |
| TGACGCCATAATATGCTGTC+AGG | + | chr1_1:47253280-47253299 | None:intergenic | 45.0% | |
| ACTACATGAGGTCAGCTACA+TGG | + | chr1_1:47253309-47253328 | None:intergenic | 45.0% | |
| TGTAGCTGACCTCATGTAGT+TGG | - | chr1_1:47253309-47253328 | Msa0024610:intron | 45.0% | |
| TAGTTGGGGTTGCTAAGGAA+GGG | - | chr1_1:47253681-47253700 | Msa0024610:CDS | 45.0% | |
| ! | GCCTATACTTTGTTTCGGTG+GGG | - | chr1_1:47253785-47253804 | Msa0024610:five_prime_UTR | 45.0% |
| TCCCCACCGAAACAAAGTAT+AGG | + | chr1_1:47253789-47253808 | None:intergenic | 45.0% | |
| GCCCATGCAACTGTTCTAAT+AGG | + | chr1_1:47253819-47253838 | None:intergenic | 45.0% | |
| ! | TTGCATGGGCTCCTTTTGAA+GGG | - | chr1_1:47253829-47253848 | Msa0024610:five_prime_UTR | 45.0% |
| !! | CATCAGTCTTTTGGCTGAGA+AGG | + | chr1_1:47253870-47253889 | None:intergenic | 45.0% |
| CTAGTTGGGGTTGCTAAGGA+AGG | - | chr1_1:47253680-47253699 | Msa0024610:CDS | 50.0% | |
| ! | GTTGCATGGGCTCCTTTTGA+AGG | - | chr1_1:47253828-47253847 | Msa0024610:five_prime_UTR | 50.0% |
| CTAAGGAAGGGAGCTGTGCT+GGG | - | chr1_1:47253693-47253712 | Msa0024610:exon | 55.0% | |
| GCTAAGGAAGGGAGCTGTGC+TGG | - | chr1_1:47253692-47253711 | Msa0024610:exon | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 47246112 | 47253889 | 47246112 | ID=Msa0024610;Name=Msa0024610 |
| chr1_1 | mRNA | 47246112 | 47253889 | 47246112 | ID=Msa0024610-mRNA-1;Parent=Msa0024610;Name=Msa0024610-mRNA-1;_AED=0.15;_eAED=0.15;_QI=179|0.87|0.88|1|1|1|9|23|652 |
| chr1_1 | exon | 47246112 | 47246223 | 47246112 | ID=Msa0024610-mRNA-1:exon:13458;Parent=Msa0024610-mRNA-1 |
| chr1_1 | exon | 47246359 | 47246404 | 47246359 | ID=Msa0024610-mRNA-1:exon:13457;Parent=Msa0024610-mRNA-1 |
| chr1_1 | exon | 47247448 | 47247520 | 47247448 | ID=Msa0024610-mRNA-1:exon:13456;Parent=Msa0024610-mRNA-1 |
| chr1_1 | exon | 47248502 | 47248627 | 47248502 | ID=Msa0024610-mRNA-1:exon:13455;Parent=Msa0024610-mRNA-1 |
| chr1_1 | exon | 47249875 | 47250896 | 47249875 | ID=Msa0024610-mRNA-1:exon:13454;Parent=Msa0024610-mRNA-1 |
| chr1_1 | exon | 47252246 | 47252336 | 47252246 | ID=Msa0024610-mRNA-1:exon:13453;Parent=Msa0024610-mRNA-1 |
| chr1_1 | exon | 47252509 | 47252561 | 47252509 | ID=Msa0024610-mRNA-1:exon:13452;Parent=Msa0024610-mRNA-1 |
| chr1_1 | exon | 47252712 | 47252847 | 47252712 | ID=Msa0024610-mRNA-1:exon:13451;Parent=Msa0024610-mRNA-1 |
| chr1_1 | exon | 47253388 | 47253889 | 47253388 | ID=Msa0024610-mRNA-1:exon:13450;Parent=Msa0024610-mRNA-1 |
| chr1_1 | five_prime_UTR | 47253711 | 47253889 | 47253711 | ID=Msa0024610-mRNA-1:five_prime_utr;Parent=Msa0024610-mRNA-1 |
| chr1_1 | CDS | 47253388 | 47253710 | 47253388 | ID=Msa0024610-mRNA-1:cds;Parent=Msa0024610-mRNA-1 |
| chr1_1 | CDS | 47252712 | 47252847 | 47252712 | ID=Msa0024610-mRNA-1:cds;Parent=Msa0024610-mRNA-1 |
| chr1_1 | CDS | 47252509 | 47252561 | 47252509 | ID=Msa0024610-mRNA-1:cds;Parent=Msa0024610-mRNA-1 |
| chr1_1 | CDS | 47252246 | 47252336 | 47252246 | ID=Msa0024610-mRNA-1:cds;Parent=Msa0024610-mRNA-1 |
| chr1_1 | CDS | 47249875 | 47250896 | 47249875 | ID=Msa0024610-mRNA-1:cds;Parent=Msa0024610-mRNA-1 |
| chr1_1 | CDS | 47248502 | 47248627 | 47248502 | ID=Msa0024610-mRNA-1:cds;Parent=Msa0024610-mRNA-1 |
| chr1_1 | CDS | 47247448 | 47247520 | 47247448 | ID=Msa0024610-mRNA-1:cds;Parent=Msa0024610-mRNA-1 |
| chr1_1 | CDS | 47246359 | 47246404 | 47246359 | ID=Msa0024610-mRNA-1:cds;Parent=Msa0024610-mRNA-1 |
| chr1_1 | CDS | 47246135 | 47246223 | 47246135 | ID=Msa0024610-mRNA-1:cds;Parent=Msa0024610-mRNA-1 |
| chr1_1 | three_prime_UTR | 47246112 | 47246134 | 47246112 | ID=Msa0024610-mRNA-1:three_prime_utr;Parent=Msa0024610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
