Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468660 | XP_003601828.1 | 99.706 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468660 | sp|P25861|G3PC_ANTMA | 91.592 | 333 | 28 | 0 | 7 | 339 | 4 | 336 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468660 | G7J2H2 | 99.706 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 0.0 | 691 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011060 | Msa0468660 | -0.817872 | 2.631917e-52 | -8.615850e-47 |
| Msa0011100 | Msa0468660 | -0.802661 | 5.046551e-49 | -8.615850e-47 |
| Msa0011920 | Msa0468660 | -0.816924 | 4.302862e-52 | -8.615850e-47 |
| Msa0021290 | Msa0468660 | 0.815292 | 9.963072e-52 | -8.615850e-47 |
| Msa0021320 | Msa0468660 | 0.801365 | 9.320466e-49 | -8.615850e-47 |
| Msa0030050 | Msa0468660 | 0.809589 | 1.756338e-50 | -8.615850e-47 |
| Msa0044010 | Msa0468660 | 0.818996 | 1.464364e-52 | -8.615850e-47 |
| Msa0055030 | Msa0468660 | 0.826642 | 2.425267e-54 | -8.615850e-47 |
| Msa0073210 | Msa0468660 | 0.825462 | 4.626703e-54 | -8.615850e-47 |
| Msa0077320 | Msa0468660 | 0.826614 | 2.462465e-54 | -8.615850e-47 |
| Msa0081700 | Msa0468660 | -0.808497 | 3.009050e-50 | -8.615850e-47 |
| Msa0092220 | Msa0468660 | 0.805403 | 1.357907e-49 | -8.615850e-47 |
| Msa0110240 | Msa0468660 | 0.825890 | 3.662157e-54 | -8.615850e-47 |
| Msa0113920 | Msa0468660 | 0.806866 | 6.680369e-50 | -8.615850e-47 |
| Msa0120860 | Msa0468660 | 0.802028 | 6.811662e-49 | -8.615850e-47 |
| Msa0132870 | Msa0468660 | 0.807522 | 4.851150e-50 | -8.615850e-47 |
| Msa0150330 | Msa0468660 | 0.822903 | 1.846753e-53 | -8.615850e-47 |
| Msa0156530 | Msa0468660 | 0.800419 | 1.454286e-48 | -8.615850e-47 |
| Msa0166990 | Msa0468660 | 0.801588 | 8.389881e-49 | -8.615850e-47 |
| Msa0174060 | Msa0468660 | -0.805234 | 1.473084e-49 | -8.615850e-47 |
| Msa0187660 | Msa0468660 | 0.819987 | 8.701064e-53 | -8.615850e-47 |
| Msa0192050 | Msa0468660 | 0.814108 | 1.822271e-51 | -8.615850e-47 |
| Msa0195030 | Msa0468660 | 0.823941 | 1.056366e-53 | -8.615850e-47 |
| Msa0214800 | Msa0468660 | 0.833796 | 4.339721e-56 | -8.615850e-47 |
| Msa0225070 | Msa0468660 | -0.813874 | 2.052470e-51 | -8.615850e-47 |
| Msa0237180 | Msa0468660 | 0.801910 | 7.204137e-49 | -8.615850e-47 |
| Msa0373550 | Msa0468660 | 0.984504 | 9.431782e-161 | -8.615850e-47 |
| Msa0376860 | Msa0468660 | 0.800397 | 1.468854e-48 | -8.615850e-47 |
| Msa0385030 | Msa0468660 | 0.809330 | 1.996264e-50 | -8.615850e-47 |
| Msa0397130 | Msa0468660 | 0.802819 | 4.680490e-49 | -8.615850e-47 |
| Msa0422070 | Msa0468660 | 0.957254 | 4.227146e-115 | -8.615850e-47 |
| Msa0432260 | Msa0468660 | -0.817327 | 3.492713e-52 | -8.615850e-47 |
| Msa0434370 | Msa0468660 | 0.850955 | 1.215163e-60 | -8.615850e-47 |
| Msa0436830 | Msa0468660 | -0.812671 | 3.770468e-51 | -8.615850e-47 |
| Msa0452770 | Msa0468660 | 0.809728 | 1.639696e-50 | -8.615850e-47 |
| Msa0463970 | Msa0468660 | 0.832324 | 1.008524e-55 | -8.615850e-47 |
| Msa0468140 | Msa0468660 | 0.804632 | 1.968215e-49 | -8.615850e-47 |
| Msa0468660 | Msa0474570 | 0.815076 | 1.112334e-51 | -8.615850e-47 |
| Msa0468660 | Msa0502900 | -0.806285 | 8.857824e-50 | -8.615850e-47 |
| Msa0468660 | Msa0514540 | 0.933983 | 8.147621e-96 | -8.615850e-47 |
| Msa0468660 | Msa0533610 | -0.802105 | 6.570511e-49 | -8.615850e-47 |
| Msa0468660 | Msa0538050 | -0.801992 | 6.930436e-49 | -8.615850e-47 |
| Msa0468660 | Msa0563440 | 0.811055 | 8.476984e-51 | -8.615850e-47 |
| Msa0468660 | Msa0569980 | -0.801321 | 9.516206e-49 | -8.615850e-47 |
| Msa0468660 | Msa0577690 | 0.824553 | 7.585472e-54 | -8.615850e-47 |
| Msa0468660 | Msa0579080 | 0.807284 | 5.448741e-50 | -8.615850e-47 |
| Msa0468660 | Msa0604890 | -0.801215 | 1.000041e-48 | -8.615850e-47 |
| Msa0468660 | Msa0610240 | -0.819529 | 1.107411e-52 | -8.615850e-47 |
| Msa0468660 | Msa0616580 | 0.829684 | 4.486194e-55 | -8.615850e-47 |
| Msa0468660 | Msa0617310 | 0.802678 | 5.005054e-49 | -8.615850e-47 |
| Msa0468660 | Msa0620080 | 0.802453 | 5.570521e-49 | -8.615850e-47 |
| Msa0468660 | Msa0646180 | -0.802441 | 5.602731e-49 | -8.615850e-47 |
| Msa0468660 | Msa0655970 | 0.804192 | 2.430404e-49 | -8.615850e-47 |
| Msa0468660 | Msa0656320 | 0.833711 | 4.558413e-56 | -8.615850e-47 |
| Msa0468660 | Msa0658520 | -0.810561 | 1.084096e-50 | -8.615850e-47 |
| Msa0468660 | Msa0660150 | 0.809080 | 2.257460e-50 | -8.615850e-47 |
| Msa0468660 | Msa0699910 | 0.828176 | 1.039761e-54 | -8.615850e-47 |
| Msa0468660 | Msa0700120 | 0.808680 | 2.750113e-50 | -8.615850e-47 |
| Msa0468660 | Msa0700410 | 0.855261 | 7.105059e-62 | -8.615850e-47 |
| Msa0468660 | Msa0703430 | -0.823665 | 1.225873e-53 | -8.615850e-47 |
| Msa0468660 | Msa0713290 | 0.816479 | 5.412971e-52 | -8.615850e-47 |
| Msa0468660 | Msa0721930 | 0.820491 | 6.670108e-53 | -8.615850e-47 |
| Msa0468660 | Msa0759230 | 0.827873 | 1.230275e-54 | -8.615850e-47 |
| Msa0468660 | Msa0762930 | 0.820267 | 7.508412e-53 | -8.615850e-47 |
| Msa0468660 | Msa0805390 | 0.832234 | 1.061860e-55 | -8.615850e-47 |
| Msa0468660 | Msa0815650 | 0.802489 | 5.474802e-49 | -8.615850e-47 |
| Msa0468660 | Msa0870220 | -0.815052 | 1.126039e-51 | -8.615850e-47 |
| Msa0468660 | Msa0880050 | 0.858174 | 9.874117e-63 | -8.615850e-47 |
| Msa0468660 | Msa0900830 | 0.822880 | 1.869573e-53 | -8.615850e-47 |
| Msa0468660 | Msa0903460 | -0.826405 | 2.761915e-54 | -8.615850e-47 |
| Msa0468660 | Msa0926240 | 0.862819 | 3.868783e-64 | -8.615850e-47 |
| Msa0468660 | Msa0931550 | -0.803037 | 4.219577e-49 | -8.615850e-47 |
| Msa0468660 | Msa0932140 | 0.801085 | 1.063379e-48 | -8.615850e-47 |
| Msa0468660 | Msa0935930 | -0.824153 | 9.417483e-54 | -8.615850e-47 |
| Msa0468660 | Msa0965800 | 0.852705 | 3.873261e-61 | -8.615850e-47 |
| Msa0468660 | Msa0967880 | 0.811182 | 7.955480e-51 | -8.615850e-47 |
| Msa0468660 | Msa0971780 | -0.800675 | 1.289741e-48 | -8.615850e-47 |
| Msa0468660 | Msa0972930 | -0.809793 | 1.587178e-50 | -8.615850e-47 |
| Msa0468660 | Msa1011800 | 0.800076 | 1.707444e-48 | -8.615850e-47 |
| Msa0468660 | Msa1014550 | -0.814264 | 1.683678e-51 | -8.615850e-47 |
| Msa0468660 | Msa1018210 | -0.803349 | 3.637074e-49 | -8.615850e-47 |
| Msa0468660 | Msa1041830 | 0.806117 | 9.613358e-50 | -8.615850e-47 |
| Msa0468660 | Msa1046140 | 0.801590 | 8.379909e-49 | -8.615850e-47 |
| Msa0468660 | Msa1053340 | 0.813631 | 2.321048e-51 | -8.615850e-47 |
| Msa0468660 | Msa1055520 | -0.829857 | 4.070529e-55 | -8.615850e-47 |
| Msa0468660 | Msa1082170 | 0.815128 | 1.083353e-51 | -8.615850e-47 |
| Msa0468660 | Msa1088400 | -0.822400 | 2.417184e-53 | -8.615850e-47 |
| Msa0468660 | Msa1089220 | 0.806647 | 7.431884e-50 | -8.615850e-47 |
| Msa0468660 | Msa1093190 | -0.812776 | 3.575132e-51 | -8.615850e-47 |
| Msa0468660 | Msa1124980 | 0.828687 | 7.825521e-55 | -8.615850e-47 |
| Msa0468660 | Msa1129240 | 0.872301 | 3.532572e-67 | -8.615850e-47 |
| Msa0468660 | Msa1142590 | 0.813688 | 2.255430e-51 | -8.615850e-47 |
| Msa0468660 | Msa1146980 | 0.839240 | 1.783162e-57 | -8.615850e-47 |
| Msa0468660 | Msa1152860 | 0.831088 | 2.035126e-55 | -8.615850e-47 |
| Msa0468660 | Msa1167360 | 0.847951 | 8.355506e-60 | -8.615850e-47 |
| Msa0468660 | Msa1172870 | 0.824636 | 7.251149e-54 | -8.615850e-47 |
| Msa0468660 | Msa1197720 | 0.800595 | 1.338941e-48 | -8.615850e-47 |
| Msa0468660 | Msa1202470 | 0.839305 | 1.716037e-57 | -8.615850e-47 |
| Msa0468660 | Msa1213470 | -0.812437 | 4.242427e-51 | -8.615850e-47 |
| Msa0468660 | Msa1218170 | 0.817491 | 3.208448e-52 | -8.615850e-47 |
| Msa0468660 | Msa1254910 | 0.822219 | 2.663231e-53 | -8.615850e-47 |
| Msa0468660 | Msa1300370 | -0.811011 | 8.665471e-51 | -8.615850e-47 |
| Msa0468660 | Msa1304790 | 0.804685 | 1.918813e-49 | -8.615850e-47 |
| Msa0468660 | Msa1307730 | 0.803875 | 2.829301e-49 | -8.615850e-47 |
| Msa0468660 | Msa1325470 | 0.819311 | 1.241605e-52 | -8.615850e-47 |
| Msa0468660 | Msa1359880 | -0.802870 | 4.569070e-49 | -8.615850e-47 |
| Msa0468660 | Msa1364110 | 0.847627 | 1.025935e-59 | -8.615850e-47 |
| Msa0468660 | Msa1384410 | -0.806205 | 9.211152e-50 | -8.615850e-47 |
| Msa0468660 | Msa1395050 | 0.807142 | 5.839168e-50 | -8.615850e-47 |
| Msa0468660 | Msa1403940 | 0.815560 | 8.683871e-52 | -8.615850e-47 |
| Msa0468660 | Msa1423050 | 0.859351 | 4.391289e-63 | -8.615850e-47 |
| Msa0468660 | Msa1434300 | 0.807438 | 5.055574e-50 | -8.615850e-47 |
| Msa0468660 | Msa1445010 | 0.822473 | 2.324553e-53 | -8.615850e-47 |
| Msa0468660 | Msa1462780 | 0.804093 | 2.549073e-49 | -8.615850e-47 |
| Msa0242720 | Msa0468660 | 0.829157 | 6.023992e-55 | -8.615850e-47 |
| Msa0251920 | Msa0468660 | 0.806255 | 8.991277e-50 | -8.615850e-47 |
| Msa0265250 | Msa0468660 | 0.806196 | 9.250612e-50 | -8.615850e-47 |
| Msa0291150 | Msa0468660 | 0.802116 | 6.536304e-49 | -8.615850e-47 |
| Msa0294200 | Msa0468660 | 0.820811 | 5.631515e-53 | -8.615850e-47 |
| Msa0315660 | Msa0468660 | 0.810127 | 1.345323e-50 | -8.615850e-47 |
| Msa0328870 | Msa0468660 | 0.813672 | 2.273320e-51 | -8.615850e-47 |
| Msa0358470 | Msa0468660 | 0.837685 | 4.492581e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468660 | MtrunA17_Chr3g0122971 | 93.529 | 340 | 1 | 1 | 1 | 340 | 1 | 319 | 0.0 | 634 |
| Msa0468660 | MtrunA17_Chr4g0057861 | 90.060 | 332 | 33 | 0 | 6 | 337 | 5 | 336 | 0.0 | 621 |
| Msa0468660 | MtrunA17_Chr6g0458861 | 85.373 | 335 | 49 | 0 | 6 | 340 | 3 | 337 | 0.0 | 598 |
| Msa0468660 | MtrunA17_Chr2g0310421 | 72.781 | 338 | 91 | 1 | 2 | 339 | 78 | 414 | 0.0 | 509 |
| Msa0468660 | MtrunA17_Chr8g0357071 | 76.378 | 254 | 46 | 4 | 84 | 325 | 56 | 307 | 6.68e-129 | 370 |
| Msa0468660 | MtrunA17_Chr3g0144151 | 47.447 | 333 | 166 | 7 | 6 | 332 | 85 | 414 | 3.58e-88 | 272 |
| Msa0468660 | MtrunA17_Chr7g0252641 | 46.687 | 332 | 171 | 5 | 4 | 332 | 67 | 395 | 1.40e-85 | 264 |
| Msa0468660 | MtrunA17_Chr8g0360951 | 83.784 | 148 | 15 | 2 | 180 | 327 | 1 | 139 | 5.55e-80 | 240 |
| Msa0468660 | MtrunA17_Chr2g0316821 | 83.673 | 49 | 8 | 0 | 220 | 268 | 7 | 55 | 1.41e-19 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468660 | AT1G13440.1 | 89.552 | 335 | 35 | 0 | 3 | 337 | 2 | 336 | 0.0 | 626 |
| Msa0468660 | AT3G04120.1 | 89.552 | 335 | 35 | 0 | 3 | 337 | 2 | 336 | 0.0 | 626 |
| Msa0468660 | AT1G13440.2 | 82.090 | 335 | 32 | 1 | 3 | 337 | 2 | 308 | 0.0 | 556 |
| Msa0468660 | AT1G79530.1 | 72.271 | 339 | 93 | 1 | 2 | 340 | 82 | 419 | 0.0 | 511 |
| Msa0468660 | AT1G16300.1 | 71.893 | 338 | 94 | 1 | 3 | 340 | 81 | 417 | 1.53e-180 | 506 |
| Msa0468660 | AT1G42970.1 | 47.493 | 339 | 169 | 7 | 6 | 338 | 81 | 416 | 9.41e-95 | 289 |
| Msa0468660 | AT1G12900.3 | 48.048 | 333 | 167 | 5 | 3 | 332 | 12 | 341 | 3.24e-90 | 274 |
| Msa0468660 | AT1G12900.4 | 48.048 | 333 | 167 | 5 | 3 | 332 | 12 | 341 | 3.24e-90 | 274 |
| Msa0468660 | AT1G12900.1 | 48.048 | 333 | 167 | 5 | 3 | 332 | 61 | 390 | 7.72e-90 | 275 |
| Msa0468660 | AT1G12900.5 | 48.048 | 333 | 167 | 5 | 3 | 332 | 103 | 432 | 1.75e-89 | 275 |
| Msa0468660 | AT3G26650.1 | 46.246 | 333 | 173 | 5 | 3 | 332 | 58 | 387 | 2.31e-86 | 266 |
| Msa0468660 | AT1G12900.2 | 49.814 | 269 | 132 | 3 | 66 | 332 | 41 | 308 | 9.18e-74 | 231 |
Find 100 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCAAGCTGAAGGGTATTT+TGG | 0.162108 | 3_3:-70349064 | Msa0468660:CDS |
| CCTCTCCAGTCCTTGCTTGA+TGG | 0.259153 | 3_3:+70349495 | None:intergenic |
| ATCTCCAGTGAGACAAAATT+TGG | 0.265475 | 3_3:+70348622 | None:intergenic |
| GAGATAGTAGTGTTGAAATT+AGG | 0.265618 | 3_3:+70351118 | None:intergenic |
| ACTTTGTGAAACTCGTTTCT+TGG | 0.270714 | 3_3:-70348846 | Msa0468660:CDS |
| GTCAATTTACCGTTCAATAC+TGG | 0.280860 | 3_3:+70349294 | None:intergenic |
| CAGGTTATTAATGACCGATT+TGG | 0.281961 | 3_3:-70349754 | Msa0468660:CDS |
| TATAAACAAATTTAAAAGAT+TGG | 0.282177 | 3_3:+70348360 | None:intergenic |
| TGGATTGAATAGACGGCTTT+AGG | 0.284704 | 3_3:-70348506 | Msa0468660:three_prime_UTR |
| CTTGGCAGCTCCAGTGCTGC+TGG | 0.294421 | 3_3:+70349443 | None:intergenic |
| AAAACAGGATTTGGAAGAAT+TGG | 0.309904 | 3_3:-70350856 | Msa0468660:intron |
| GACACTAAGACCCTTCTCTT+TGG | 0.356905 | 3_3:-70350595 | Msa0468660:CDS |
| AAACATAGGTGCATCTTTGC+TGG | 0.359553 | 3_3:+70349960 | None:intergenic |
| ATTCAAAGCAATTCCAGCTT+TGG | 0.384329 | 3_3:+70348873 | None:intergenic |
| ATGACAACGAATGGGGTTAC+AGG | 0.389525 | 3_3:-70348822 | Msa0468660:intron |
| GTGGTATCTACTGACTTTAT+TGG | 0.395775 | 3_3:-70349024 | Msa0468660:CDS |
| GAGATTAGAGTGAGGTTTGG+TGG | 0.402333 | 3_3:+70351157 | None:intergenic |
| TCACCCCATGGAATCTCCTC+AGG | 0.421872 | 3_3:+70350432 | None:intergenic |
| GCCACTCAGAAGACTGTTGA+TGG | 0.424666 | 3_3:-70349519 | Msa0468660:CDS |
| TTTCAACACTACTATCTCAA+TGG | 0.436913 | 3_3:-70351113 | Msa0468660:exon |
| AGCAGAAATAACAACCTTCT+TGG | 0.437227 | 3_3:+70349984 | None:intergenic |
| TGGCTTGATGAGTCTGAGCT+TGG | 0.438497 | 3_3:-70348661 | Msa0468660:exon |
| CAAAGCTGCTGCTCACTTGA+AGG | 0.450187 | 3_3:-70350358 | Msa0468660:intron |
| CAGTTGTTGACCTTACTGTA+AGG | 0.450759 | 3_3:-70349236 | Msa0468660:CDS |
| AGCATCTTTGATGCCAAAGC+TGG | 0.451793 | 3_3:-70348886 | Msa0468660:CDS |
| GATTGTCCACATTGCTTCTG+TGG | 0.453352 | 3_3:-70348681 | Msa0468660:CDS |
| GACCGATTTGGAATCGTTGA+GGG | 0.456120 | 3_3:-70349742 | Msa0468660:CDS |
| AATGAGATTAGAGTGAGGTT+TGG | 0.460637 | 3_3:+70351154 | None:intergenic |
| TTGGAAACAATGTTAAGCTC+TGG | 0.470905 | 3_3:+70349907 | None:intergenic |
| TTCTTGGTATGACAACGAAT+GGG | 0.472520 | 3_3:-70348830 | Msa0468660:CDS |
| TCTTCTCAAGCCTTACAGTA+AGG | 0.474802 | 3_3:+70349226 | None:intergenic |
| TTCAACACTACTATCTCAAT+GGG | 0.475956 | 3_3:-70351112 | Msa0468660:intron |
| AACATCATTCCCAGCAGCAC+TGG | 0.480002 | 3_3:-70349453 | Msa0468660:CDS |
| GATGCACCTATGTTTGTTGT+TGG | 0.480077 | 3_3:-70349952 | Msa0468660:CDS |
| TGGGACACGGAATGACATTC+CGG | 0.489853 | 3_3:+70349272 | None:intergenic |
| TTCAAGTATGACACTGTTCA+CGG | 0.491509 | 3_3:-70350649 | Msa0468660:CDS |
| ATTTGGAAGAATTGGACGAT+TGG | 0.494519 | 3_3:-70350848 | Msa0468660:CDS |
| TAGCATCTGACAAGAAGATC+AGG | 0.494730 | 3_3:-70350982 | Msa0468660:CDS |
| GATTACGTTATTGAGTCAAC+TGG | 0.498321 | 3_3:-70350399 | Msa0468660:CDS |
| GAGATTCCATGGGGTGAGGT+TGG | 0.499881 | 3_3:-70350426 | Msa0468660:CDS |
| GACCCTCAACGATTCCAAAT+CGG | 0.501135 | 3_3:+70349740 | None:intergenic |
| CTGACTTTATTGGCGATAGC+AGG | 0.501827 | 3_3:-70349014 | Msa0468660:intron |
| TTTCTTGGTATGACAACGAA+TGG | 0.505583 | 3_3:-70348831 | Msa0468660:CDS |
| GGAATCAGAGGGCAAGCTGA+AGG | 0.509794 | 3_3:-70349073 | Msa0468660:CDS |
| GATAAATAAACAACCTGTGA+TGG | 0.511375 | 3_3:+70349699 | None:intergenic |
| CAACTGAAACATCGACGGTT+GGG | 0.515252 | 3_3:+70349253 | None:intergenic |
| TTTCATCACTACTGATTACA+TGG | 0.515255 | 3_3:-70350770 | Msa0468660:intron |
| CAGCAGCACTGGAGCTGCCA+AGG | 0.520669 | 3_3:-70349442 | Msa0468660:intron |
| GGCAGCCTTGATCTGCTCAT+AGG | 0.524781 | 3_3:+70349197 | None:intergenic |
| TTGGCAGCTCCAGTGCTGCT+GGG | 0.526344 | 3_3:+70349444 | None:intergenic |
| CAATCAAGCTAAATATAAAG+AGG | 0.528587 | 3_3:+70348403 | None:intergenic |
| AAACATCGACGGTTGGGACA+CGG | 0.531370 | 3_3:+70349259 | None:intergenic |
| CTTCTTTCTCACCAAAGAGA+AGG | 0.533597 | 3_3:+70350584 | None:intergenic |
| TTCTTTCTCACCAAAGAGAA+GGG | 0.538245 | 3_3:+70350585 | None:intergenic |
| ACAACTGAAACATCGACGGT+TGG | 0.545734 | 3_3:+70349252 | None:intergenic |
| GTTAGTAGTGCAACTAGCAT+TGG | 0.551894 | 3_3:+70349888 | None:intergenic |
| AACATAGGTGCATCTTTGCT+GGG | 0.553014 | 3_3:+70349961 | None:intergenic |
| ATGGTCCATCAAGCAAGGAC+TGG | 0.555599 | 3_3:-70349500 | Msa0468660:CDS |
| CTGCCTTGCTCCCCTCGCCA+AGG | 0.563779 | 3_3:-70349866 | Msa0468660:intron |
| ATGACACTGTTCACGGTCAG+TGG | 0.566865 | 3_3:-70350642 | Msa0468660:CDS |
| AGCAACCTATGAGCAGATCA+AGG | 0.567372 | 3_3:-70349202 | Msa0468660:CDS |
| AAACCTTGGCGAGGGGAGCA+AGG | 0.568255 | 3_3:+70349863 | None:intergenic |
| GGAACCCTGAGGAGATTCCA+TGG | 0.575104 | 3_3:-70350437 | Msa0468660:CDS |
| AGTCTGAGCTTGGATTGCAT+TGG | 0.577784 | 3_3:-70348651 | Msa0468660:three_prime_UTR |
| TTAACACCAACAACAAACAT+AGG | 0.578256 | 3_3:+70349946 | None:intergenic |
| GTAACAATTTACAACAGTAT+CGG | 0.583695 | 3_3:-70348331 | Msa0468660:three_prime_UTR |
| TGAGGAGATTCCATGGGGTG+AGG | 0.584999 | 3_3:-70350430 | Msa0468660:CDS |
| TGACCGATTTGGAATCGTTG+AGG | 0.585725 | 3_3:-70349743 | Msa0468660:CDS |
| ATTTGAAACATACAGGCTGT+AGG | 0.586694 | 3_3:-70349327 | Msa0468660:intron |
| GAACCCTGAGGAGATTCCAT+GGG | 0.589804 | 3_3:-70350436 | Msa0468660:CDS |
| TCCTTCTCTAAAACAAGAGT+AGG | 0.589821 | 3_3:+70348477 | None:intergenic |
| TCAAGCAAGGACTGGAGAGG+TGG | 0.590129 | 3_3:-70349492 | Msa0468660:CDS |
| GTATTGAACGGTAAATTGAC+CGG | 0.592350 | 3_3:-70349291 | Msa0468660:CDS |
| ATAAGAATGAGATTAGAGTG+AGG | 0.597103 | 3_3:+70351149 | None:intergenic |
| ACCACAGTTCACGCCATCAC+AGG | 0.598843 | 3_3:-70349712 | Msa0468660:intron |
| AAGATCAGGATCGGAATCAA+CGG | 0.599281 | 3_3:-70350968 | Msa0468660:intron |
| TGATTAGGGTGGTGCCAAGA+AGG | 0.600438 | 3_3:-70349998 | Msa0468660:intron |
| CACCCCATGGAATCTCCTCA+GGG | 0.600637 | 3_3:+70350433 | None:intergenic |
| GCTGCTGGGAATGATGTTGA+AGG | 0.601432 | 3_3:+70349458 | None:intergenic |
| TCAGCTCCAACCTCACCCCA+TGG | 0.603751 | 3_3:+70350420 | None:intergenic |
| TGTTGTTGGTGTTAACGAGA+AGG | 0.604083 | 3_3:-70349938 | Msa0468660:CDS |
| GAATCAGAGGGCAAGCTGAA+GGG | 0.606362 | 3_3:-70349072 | Msa0468660:CDS |
| GACAATCAAATCAATAACAC+GGG | 0.607012 | 3_3:+70348697 | None:intergenic |
| AGTGTCATACTTGAACATAT+AGG | 0.610966 | 3_3:+70350657 | None:intergenic |
| ATGTAATCAGTAGTGATGAA+AGG | 0.611234 | 3_3:+70350772 | None:intergenic |
| TCTTGGTATGACAACGAATG+GGG | 0.619721 | 3_3:-70348829 | Msa0468660:CDS |
| GGGTTACACTGAAGATGATG+TGG | 0.627513 | 3_3:-70349043 | Msa0468660:CDS |
| TCTGACAAGAAGATCAGGAT+CGG | 0.628839 | 3_3:-70350977 | Msa0468660:CDS |
| AAGAGGATCGCAAAGAGACA+TGG | 0.630623 | 3_3:+70348420 | None:intergenic |
| TGTTGATGGTCCATCAAGCA+AGG | 0.632457 | 3_3:-70349505 | Msa0468660:CDS |
| GTCAACAACTGAAACATCGA+CGG | 0.646627 | 3_3:+70349248 | None:intergenic |
| CCATCAAGCAAGGACTGGAG+AGG | 0.655042 | 3_3:-70349495 | Msa0468660:CDS |
| GGACAATCAAATCAATAACA+CGG | 0.656794 | 3_3:+70348696 | None:intergenic |
| AAAACCAGGGAGGAATCAGA+GGG | 0.660427 | 3_3:-70349084 | Msa0468660:intron |
| ACCTGTGATGGCGTGAACTG+TGG | 0.667657 | 3_3:+70349711 | None:intergenic |
| AAAGTGCTTCCAGTATTGAA+CGG | 0.668457 | 3_3:-70349303 | Msa0468660:CDS |
| ATCAAGCCACAGAAGCAATG+TGG | 0.677587 | 3_3:+70348675 | None:intergenic |
| AACCCTGAGGAGATTCCATG+GGG | 0.716862 | 3_3:-70350435 | Msa0468660:CDS |
| ACCATCAACAGTCTTCTGAG+TGG | 0.726815 | 3_3:+70349518 | None:intergenic |
| TCTGAATAATAGGAACCCTG+AGG | 0.747270 | 3_3:-70350448 | Msa0468660:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGAAATTTATGTAATT+TGG | - | chr3_3:70349457-70349476 | Msa0468660:CDS | 10.0% |
| !! | TATAAACAAATTTAAAAGAT+TGG | + | chr3_3:70351131-70351150 | None:intergenic | 10.0% |
| !!! | TGTTTGATTAATTTTGTAAT+CGG | + | chr3_3:70348757-70348776 | None:intergenic | 15.0% |
| !! | TATCAAAATCTAATTAATTG+TGG | + | chr3_3:70349435-70349454 | None:intergenic | 15.0% |
| !!! | TTTTAAATTATTAGCTTCAT+TGG | - | chr3_3:70349685-70349704 | Msa0468660:intron | 15.0% |
| !! | AAATTTGTCAAATTATTACA+TGG | - | chr3_3:70350085-70350104 | Msa0468660:intron | 15.0% |
| !!! | GCATTTTTATTTTTGTATTT+TGG | - | chr3_3:70350962-70350981 | Msa0468660:intron | 15.0% |
| !! | TAAACGAGAAATAGATTAAA+CGG | + | chr3_3:70348458-70348477 | None:intergenic | 20.0% |
| !!! | AACTGTTTTAACTTTAAAAC+AGG | - | chr3_3:70348617-70348636 | Msa0468660:three_prime_UTR | 20.0% |
| !!! | TTTAACTTTAAAACAGGATT+TGG | - | chr3_3:70348623-70348642 | Msa0468660:three_prime_UTR | 20.0% |
| !!! | TAATTTATGATCTGTGATTT+TGG | - | chr3_3:70348947-70348966 | Msa0468660:intron | 20.0% |
| !! | ATTAATTACAACATCCAAAA+GGG | + | chr3_3:70348988-70349007 | None:intergenic | 20.0% |
| !! | AATTAATTACAACATCCAAA+AGG | + | chr3_3:70348989-70349008 | None:intergenic | 20.0% |
| !!! | TATTATTTGATAGAGCATTT+TGG | - | chr3_3:70349184-70349203 | Msa0468660:intron | 20.0% |
| !!! | ATTATTTGATAGAGCATTTT+GGG | - | chr3_3:70349185-70349204 | Msa0468660:intron | 20.0% |
| !!! | TATTAATTTTTACTCTTTGC+AGG | - | chr3_3:70349715-70349734 | Msa0468660:CDS | 20.0% |
| !!! | ATATTGAATTTGAAACATAC+AGG | - | chr3_3:70350154-70350173 | Msa0468660:intron | 20.0% |
| !!! | TTTTGCAATTTCAACAAAAT+AGG | + | chr3_3:70350387-70350406 | None:intergenic | 20.0% |
| ! | AGAAAAAGGAAAAAGGAAAA+AGG | + | chr3_3:70348425-70348444 | None:intergenic | 25.0% |
| ! | TTAAGAGAGAAAAAGGAAAA+AGG | + | chr3_3:70348432-70348451 | None:intergenic | 25.0% |
| !!! | TTATTTGATAGAGCATTTTG+GGG | - | chr3_3:70349186-70349205 | Msa0468660:intron | 25.0% |
| ! | TTATGTAATTTGGATTGTTG+TGG | - | chr3_3:70349467-70349486 | Msa0468660:CDS | 25.0% |
| ! | TGATTAACTGATTGATTGTT+TGG | - | chr3_3:70349934-70349953 | Msa0468660:CDS | 25.0% |
| !! | TTTATCATTATAGAGTACCT+TGG | + | chr3_3:70350066-70350085 | None:intergenic | 25.0% |
| ! | CAAATTATTACATGGTTGAA+TGG | - | chr3_3:70350093-70350112 | Msa0468660:intron | 25.0% |
| ! | AAGTTTAACACTTTACTTGA+TGG | + | chr3_3:70350315-70350334 | None:intergenic | 25.0% |
| ! | AAAATAGGTTTATGTTAGGA+GGG | + | chr3_3:70350372-70350391 | None:intergenic | 25.0% |
| ! | CAACAAAATAGGTTTATGTT+AGG | + | chr3_3:70350376-70350395 | None:intergenic | 25.0% |
| !!! | TGAACTTTATTTTCATTTGC+AGG | - | chr3_3:70350576-70350595 | Msa0468660:CDS | 25.0% |
| ! | ATCACAATATGACATTGAAT+TGG | - | chr3_3:70350705-70350724 | Msa0468660:intron | 25.0% |
| !! | GATGAACACTATGTATATTT+TGG | + | chr3_3:70350735-70350754 | None:intergenic | 25.0% |
| !! | GCAACACAAATTTTTATTCT+TGG | + | chr3_3:70350912-70350931 | None:intergenic | 25.0% |
| ! | AGAATAAAAATTTGTGTTGC+TGG | - | chr3_3:70350912-70350931 | Msa0468660:intron | 25.0% |
| !! | GAATAAAAATTTGTGTTGCT+GGG | - | chr3_3:70350913-70350932 | Msa0468660:intron | 25.0% |
| !!! | TGTATTTTGGATTGAATAGA+CGG | - | chr3_3:70350975-70350994 | Msa0468660:CDS | 25.0% |
| ! | CAATCAAGCTAAATATAAAG+AGG | + | chr3_3:70351088-70351107 | None:intergenic | 25.0% |
| ATAAGAATGAGATTAGAGTG+AGG | + | chr3_3:70348342-70348361 | None:intergenic | 30.0% | |
| ! | GAGATAGTAGTGTTGAAATT+AGG | + | chr3_3:70348373-70348392 | None:intergenic | 30.0% |
| TTTCAACACTACTATCTCAA+TGG | - | chr3_3:70348375-70348394 | Msa0468660:three_prime_UTR | 30.0% | |
| TTCAACACTACTATCTCAAT+GGG | - | chr3_3:70348376-70348395 | Msa0468660:three_prime_UTR | 30.0% | |
| AAAACAGGATTTGGAAGAAT+TGG | - | chr3_3:70348632-70348651 | Msa0468660:three_prime_UTR | 30.0% | |
| ATGTAATCAGTAGTGATGAA+AGG | + | chr3_3:70348719-70348738 | None:intergenic | 30.0% | |
| ! | TTTCATCACTACTGATTACA+TGG | - | chr3_3:70348718-70348737 | Msa0468660:intron | 30.0% |
| AGTGTCATACTTGAACATAT+AGG | + | chr3_3:70348834-70348853 | None:intergenic | 30.0% | |
| ! | GCATTTTGAACTTAAGGTTA+AGG | - | chr3_3:70348871-70348890 | Msa0468660:CDS | 30.0% |
| ATCACAGATCATAAATTACC+TGG | + | chr3_3:70348945-70348964 | None:intergenic | 30.0% | |
| TCTGATTGCATCTGAATAAT+AGG | - | chr3_3:70349030-70349049 | Msa0468660:CDS | 30.0% | |
| TGTATCGAATCATTCAAACA+GGG | + | chr3_3:70349382-70349401 | None:intergenic | 30.0% | |
| TTAACACCAACAACAAACAT+AGG | + | chr3_3:70349545-70349564 | None:intergenic | 30.0% | |
| !! | AGGGTATTGAAAAAAAACCT+TGG | + | chr3_3:70349642-70349661 | None:intergenic | 30.0% |
| CCAATAAACATGCTACAAAA+GGG | + | chr3_3:70349661-70349680 | None:intergenic | 30.0% | |
| ACCAATAAACATGCTACAAA+AGG | + | chr3_3:70349662-70349681 | None:intergenic | 30.0% | |
| GATAAATAAACAACCTGTGA+TGG | + | chr3_3:70349792-70349811 | None:intergenic | 30.0% | |
| GGAGGGAAAAATTATTCAAT+TGG | + | chr3_3:70350355-70350374 | None:intergenic | 30.0% | |
| CAAAATAGGTTTATGTTAGG+AGG | + | chr3_3:70350373-70350392 | None:intergenic | 30.0% | |
| TTGTTGAAATTGCAAAAACC+AGG | - | chr3_3:70350390-70350409 | Msa0468660:CDS | 30.0% | |
| TGTTGAAATTGCAAAAACCA+GGG | - | chr3_3:70350391-70350410 | Msa0468660:CDS | 30.0% | |
| ! | AAACTGTCATGATCAGTTTT+TGG | - | chr3_3:70350528-70350547 | Msa0468660:intron | 30.0% |
| AATGTCATATTGTGATAGCA+AGG | + | chr3_3:70350701-70350720 | None:intergenic | 30.0% | |
| GACAATCAAATCAATAACAC+GGG | + | chr3_3:70350794-70350813 | None:intergenic | 30.0% | |
| GGACAATCAAATCAATAACA+CGG | + | chr3_3:70350795-70350814 | None:intergenic | 30.0% | |
| AATGAGATTAGAGTGAGGTT+TGG | + | chr3_3:70348337-70348356 | None:intergenic | 35.0% | |
| ACGGTGATTAAGAGAGAAAA+AGG | + | chr3_3:70348439-70348458 | None:intergenic | 35.0% | |
| ATTTGGAAGAATTGGACGAT+TGG | - | chr3_3:70348640-70348659 | Msa0468660:three_prime_UTR | 35.0% | |
| TTCAAGTATGACACTGTTCA+CGG | - | chr3_3:70348839-70348858 | Msa0468660:CDS | 35.0% | |
| !!! | GTGGAAGCATTTTGAACTTA+AGG | - | chr3_3:70348865-70348884 | Msa0468660:CDS | 35.0% |
| TTCTTTCTCACCAAAGAGAA+GGG | + | chr3_3:70348906-70348925 | None:intergenic | 35.0% | |
| !!! | GAGAAAGAAGTTGCTGTTTT+CGG | - | chr3_3:70348917-70348936 | Msa0468660:intron | 35.0% |
| GATTACGTTATTGAGTCAAC+TGG | - | chr3_3:70349089-70349108 | Msa0468660:intron | 35.0% | |
| CTGTATCGAATCATTCAAAC+AGG | + | chr3_3:70349383-70349402 | None:intergenic | 35.0% | |
| TTTGGATTGTTGTGGTGATT+AGG | - | chr3_3:70349475-70349494 | Msa0468660:CDS | 35.0% | |
| TTGGATTGTTGTGGTGATTA+GGG | - | chr3_3:70349476-70349495 | Msa0468660:CDS | 35.0% | |
| AGCAGAAATAACAACCTTCT+TGG | + | chr3_3:70349507-70349526 | None:intergenic | 35.0% | |
| TTGGAAACAATGTTAAGCTC+TGG | + | chr3_3:70349584-70349603 | None:intergenic | 35.0% | |
| TTGAAAAAAAACCTTGGCGA+GGG | + | chr3_3:70349636-70349655 | None:intergenic | 35.0% | |
| ATTGAAAAAAAACCTTGGCG+AGG | + | chr3_3:70349637-70349656 | None:intergenic | 35.0% | |
| ! | CCCTTTTGTAGCATGTTTAT+TGG | - | chr3_3:70349658-70349677 | Msa0468660:intron | 35.0% |
| CAGGTTATTAATGACCGATT+TGG | - | chr3_3:70349734-70349753 | Msa0468660:CDS | 35.0% | |
| ! | ATTTGAAACATACAGGCTGT+AGG | - | chr3_3:70350161-70350180 | Msa0468660:intron | 35.0% |
| ! | AAAGTGCTTCCAGTATTGAA+CGG | - | chr3_3:70350185-70350204 | Msa0468660:intron | 35.0% |
| GTCAATTTACCGTTCAATAC+TGG | + | chr3_3:70350197-70350216 | None:intergenic | 35.0% | |
| GTATTGAACGGTAAATTGAC+CGG | - | chr3_3:70350197-70350216 | Msa0468660:intron | 35.0% | |
| !! | GTGGTATCTACTGACTTTAT+TGG | - | chr3_3:70350464-70350483 | Msa0468660:intron | 35.0% |
| ATTCAAAGCAATTCCAGCTT+TGG | + | chr3_3:70350618-70350637 | None:intergenic | 35.0% | |
| ACTTTGTGAAACTCGTTTCT+TGG | - | chr3_3:70350642-70350661 | Msa0468660:CDS | 35.0% | |
| TTTCTTGGTATGACAACGAA+TGG | - | chr3_3:70350657-70350676 | Msa0468660:CDS | 35.0% | |
| TTCTTGGTATGACAACGAAT+GGG | - | chr3_3:70350658-70350677 | Msa0468660:CDS | 35.0% | |
| ! | TGTTCCAAATTTTGTCTCAC+TGG | - | chr3_3:70350862-70350881 | Msa0468660:intron | 35.0% |
| ATCTCCAGTGAGACAAAATT+TGG | + | chr3_3:70350869-70350888 | None:intergenic | 35.0% | |
| !!! | ACCTACTCTTGTTTTAGAGA+AGG | - | chr3_3:70351010-70351029 | Msa0468660:intron | 35.0% |
| !! | TCCTTCTCTAAAACAAGAGT+AGG | + | chr3_3:70351014-70351033 | None:intergenic | 35.0% |
| TAGCATCTGACAAGAAGATC+AGG | - | chr3_3:70348506-70348525 | Msa0468660:three_prime_UTR | 40.0% | |
| TCTGACAAGAAGATCAGGAT+CGG | - | chr3_3:70348511-70348530 | Msa0468660:three_prime_UTR | 40.0% | |
| AAGATCAGGATCGGAATCAA+CGG | - | chr3_3:70348520-70348539 | Msa0468660:three_prime_UTR | 40.0% | |
| AAACAACGAGATTCGAACTC+TGG | - | chr3_3:70348772-70348791 | Msa0468660:intron | 40.0% | |
| CTTCTTTCTCACCAAAGAGA+AGG | + | chr3_3:70348907-70348926 | None:intergenic | 40.0% | |
| ! | TCTGAATCTCATGTCCCTTT+TGG | - | chr3_3:70348971-70348990 | Msa0468660:intron | 40.0% |
| TCTGAATAATAGGAACCCTG+AGG | - | chr3_3:70349040-70349059 | Msa0468660:CDS | 40.0% | |
| ! | AACTGGTGTTTTCACTGACA+AGG | - | chr3_3:70349106-70349125 | Msa0468660:intron | 40.0% |
| ATTGTCTCACTCAGTAGAGT+CGG | + | chr3_3:70349229-70349248 | None:intergenic | 40.0% | |
| AACATAGGTGCATCTTTGCT+GGG | + | chr3_3:70349530-70349549 | None:intergenic | 40.0% | |
| AAACATAGGTGCATCTTTGC+TGG | + | chr3_3:70349531-70349550 | None:intergenic | 40.0% | |
| !! | GATGCACCTATGTTTGTTGT+TGG | - | chr3_3:70349536-70349555 | Msa0468660:intron | 40.0% |
| !! | TGTTGTTGGTGTTAACGAGA+AGG | - | chr3_3:70349550-70349569 | Msa0468660:intron | 40.0% |
| GTTAGTAGTGCAACTAGCAT+TGG | + | chr3_3:70349603-70349622 | None:intergenic | 40.0% | |
| TGAAAAAAAACCTTGGCGAG+GGG | + | chr3_3:70349635-70349654 | None:intergenic | 40.0% | |
| GTCAACAACTGAAACATCGA+CGG | + | chr3_3:70350243-70350262 | None:intergenic | 40.0% | |
| CAGTTGTTGACCTTACTGTA+AGG | - | chr3_3:70350252-70350271 | Msa0468660:intron | 40.0% | |
| TCTTCTCAAGCCTTACAGTA+AGG | + | chr3_3:70350265-70350284 | None:intergenic | 40.0% | |
| TGAAATTGCAAAAACCAGGG+AGG | - | chr3_3:70350394-70350413 | Msa0468660:CDS | 40.0% | |
| TCTTGGTATGACAACGAATG+GGG | - | chr3_3:70350659-70350678 | Msa0468660:CDS | 40.0% | |
| TGGATTGAATAGACGGCTTT+AGG | - | chr3_3:70350982-70351001 | Msa0468660:CDS | 40.0% | |
| GAGATTAGAGTGAGGTTTGG+TGG | + | chr3_3:70348334-70348353 | None:intergenic | 45.0% | |
| GACACTAAGACCCTTCTCTT+TGG | - | chr3_3:70348893-70348912 | Msa0468660:CDS | 45.0% | |
| !!! | AAGTTGCTGTTTTCGGAACC+AGG | - | chr3_3:70348924-70348943 | Msa0468660:intron | 45.0% |
| ACTCAGTAGAGTCGGATACA+TGG | + | chr3_3:70349221-70349240 | None:intergenic | 45.0% | |
| GATTGTTGTGGTGATTAGGG+TGG | - | chr3_3:70349479-70349498 | Msa0468660:CDS | 45.0% | |
| !! | TGACCGATTTGGAATCGTTG+AGG | - | chr3_3:70349745-70349764 | Msa0468660:CDS | 45.0% |
| !! | GACCGATTTGGAATCGTTGA+GGG | - | chr3_3:70349746-70349765 | Msa0468660:CDS | 45.0% |
| GACCCTCAACGATTCCAAAT+CGG | + | chr3_3:70349751-70349770 | None:intergenic | 45.0% | |
| ACCATCAACAGTCTTCTGAG+TGG | + | chr3_3:70349973-70349992 | None:intergenic | 45.0% | |
| !! | TGTTGATGGTCCATCAAGCA+AGG | - | chr3_3:70349983-70350002 | Msa0468660:CDS | 45.0% |
| CAACTGAAACATCGACGGTT+GGG | + | chr3_3:70350238-70350257 | None:intergenic | 45.0% | |
| ACAACTGAAACATCGACGGT+TGG | + | chr3_3:70350239-70350258 | None:intergenic | 45.0% | |
| AGCAACCTATGAGCAGATCA+AGG | - | chr3_3:70350286-70350305 | Msa0468660:intron | 45.0% | |
| AAAAACCAGGGAGGAATCAG+AGG | - | chr3_3:70350403-70350422 | Msa0468660:CDS | 45.0% | |
| AAAACCAGGGAGGAATCAGA+GGG | - | chr3_3:70350404-70350423 | Msa0468660:CDS | 45.0% | |
| !!! | GGCAAGCTGAAGGGTATTTT+GGG | - | chr3_3:70350425-70350444 | Msa0468660:CDS | 45.0% |
| GGGTTACACTGAAGATGATG+TGG | - | chr3_3:70350445-70350464 | Msa0468660:intron | 45.0% | |
| CTGACTTTATTGGCGATAGC+AGG | - | chr3_3:70350474-70350493 | Msa0468660:intron | 45.0% | |
| TTGGCGATAGCAGGTAATGT+TGG | - | chr3_3:70350483-70350502 | Msa0468660:intron | 45.0% | |
| AGCATCTTTGATGCCAAAGC+TGG | - | chr3_3:70350602-70350621 | Msa0468660:CDS | 45.0% | |
| ATGACAACGAATGGGGTTAC+AGG | - | chr3_3:70350666-70350685 | Msa0468660:intron | 45.0% | |
| GATTGTCCACATTGCTTCTG+TGG | - | chr3_3:70350807-70350826 | Msa0468660:CDS | 45.0% | |
| ATCAAGCCACAGAAGCAATG+TGG | + | chr3_3:70350816-70350835 | None:intergenic | 45.0% | |
| AGTCTGAGCTTGGATTGCAT+TGG | - | chr3_3:70350837-70350856 | Msa0468660:CDS | 45.0% | |
| AAGAGGATCGCAAAGAGACA+TGG | + | chr3_3:70351071-70351090 | None:intergenic | 45.0% | |
| ATGACACTGTTCACGGTCAG+TGG | - | chr3_3:70348846-70348865 | Msa0468660:CDS | 50.0% | |
| GAACCCTGAGGAGATTCCAT+GGG | - | chr3_3:70349052-70349071 | Msa0468660:CDS | 50.0% | |
| AACCCTGAGGAGATTCCATG+GGG | - | chr3_3:70349053-70349072 | Msa0468660:CDS | 50.0% | |
| CAAAGCTGCTGCTCACTTGA+AGG | - | chr3_3:70349130-70349149 | Msa0468660:intron | 50.0% | |
| ! | TGATTAGGGTGGTGCCAAGA+AGG | - | chr3_3:70349490-70349509 | Msa0468660:CDS | 50.0% |
| GCCACTCAGAAGACTGTTGA+TGG | - | chr3_3:70349969-70349988 | Msa0468660:CDS | 50.0% | |
| ATGGTCCATCAAGCAAGGAC+TGG | - | chr3_3:70349988-70350007 | Msa0468660:CDS | 50.0% | |
| GCTGCTGGGAATGATGTTGA+AGG | + | chr3_3:70350033-70350052 | None:intergenic | 50.0% | |
| AACATCATTCCCAGCAGCAC+TGG | - | chr3_3:70350035-70350054 | Msa0468660:intron | 50.0% | |
| TGGGACACGGAATGACATTC+CGG | + | chr3_3:70350219-70350238 | None:intergenic | 50.0% | |
| AAACATCGACGGTTGGGACA+CGG | + | chr3_3:70350232-70350251 | None:intergenic | 50.0% | |
| GAATCAGAGGGCAAGCTGAA+GGG | - | chr3_3:70350416-70350435 | Msa0468660:CDS | 50.0% | |
| !!! | GGGCAAGCTGAAGGGTATTT+TGG | - | chr3_3:70350424-70350443 | Msa0468660:CDS | 50.0% |
| TGGCTTGATGAGTCTGAGCT+TGG | - | chr3_3:70350827-70350846 | Msa0468660:CDS | 50.0% | |
| GGAACCCTGAGGAGATTCCA+TGG | - | chr3_3:70349051-70349070 | Msa0468660:CDS | 55.0% | |
| CACCCCATGGAATCTCCTCA+GGG | + | chr3_3:70349058-70349077 | None:intergenic | 55.0% | |
| TCACCCCATGGAATCTCCTC+AGG | + | chr3_3:70349059-70349078 | None:intergenic | 55.0% | |
| TGAGGAGATTCCATGGGGTG+AGG | - | chr3_3:70349058-70349077 | Msa0468660:CDS | 55.0% | |
| GAGATTCCATGGGGTGAGGT+TGG | - | chr3_3:70349062-70349081 | Msa0468660:CDS | 55.0% | |
| ACCACAGTTCACGCCATCAC+AGG | - | chr3_3:70349776-70349795 | Msa0468660:intron | 55.0% | |
| ! | ACCTGTGATGGCGTGAACTG+TGG | + | chr3_3:70349780-70349799 | None:intergenic | 55.0% |
| CCTCTCCAGTCCTTGCTTGA+TGG | + | chr3_3:70349996-70350015 | None:intergenic | 55.0% | |
| CCATCAAGCAAGGACTGGAG+AGG | - | chr3_3:70349993-70350012 | Msa0468660:CDS | 55.0% | |
| TCAAGCAAGGACTGGAGAGG+TGG | - | chr3_3:70349996-70350015 | Msa0468660:intron | 55.0% | |
| GGCAGCCTTGATCTGCTCAT+AGG | + | chr3_3:70350294-70350313 | None:intergenic | 55.0% | |
| GGAATCAGAGGGCAAGCTGA+AGG | - | chr3_3:70350415-70350434 | Msa0468660:CDS | 55.0% | |
| TCAGCTCCAACCTCACCCCA+TGG | + | chr3_3:70349071-70349090 | None:intergenic | 60.0% | |
| AAACCTTGGCGAGGGGAGCA+AGG | + | chr3_3:70349628-70349647 | None:intergenic | 60.0% | |
| ! | TTGGCAGCTCCAGTGCTGCT+GGG | + | chr3_3:70350047-70350066 | None:intergenic | 60.0% |
| CTTGCCCTCTGATTCCTCCC+TGG | + | chr3_3:70350411-70350430 | None:intergenic | 60.0% | |
| CTTGGCAGCTCCAGTGCTGC+TGG | + | chr3_3:70350048-70350067 | None:intergenic | 65.0% | |
| ! | CAGCAGCACTGGAGCTGCCA+AGG | - | chr3_3:70350046-70350065 | Msa0468660:intron | 65.0% |
| CTGCCTTGCTCCCCTCGCCA+AGG | - | chr3_3:70349622-70349641 | Msa0468660:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 70348331 | 70351179 | 70348331 | ID=Msa0468660;Name=Msa0468660 |
| chr3_3 | mRNA | 70348331 | 70351179 | 70348331 | ID=Msa0468660-mRNA-1;Parent=Msa0468660;Name=Msa0468660-mRNA-1;_AED=0.16;_eAED=0.16;_QI=63|1|1|1|1|1|12|345|340 |
| chr3_3 | exon | 70348331 | 70348721 | 70348331 | ID=Msa0468660-mRNA-1:exon:17024;Parent=Msa0468660-mRNA-1 |
| chr3_3 | exon | 70348823 | 70348912 | 70348823 | ID=Msa0468660-mRNA-1:exon:17023;Parent=Msa0468660-mRNA-1 |
| chr3_3 | exon | 70349015 | 70349098 | 70349015 | ID=Msa0468660-mRNA-1:exon:17022;Parent=Msa0468660-mRNA-1 |
| chr3_3 | exon | 70349192 | 70349334 | 70349192 | ID=Msa0468660-mRNA-1:exon:17021;Parent=Msa0468660-mRNA-1 |
| chr3_3 | exon | 70349443 | 70349540 | 70349443 | ID=Msa0468660-mRNA-1:exon:17020;Parent=Msa0468660-mRNA-1 |
| chr3_3 | exon | 70349713 | 70349773 | 70349713 | ID=Msa0468660-mRNA-1:exon:17019;Parent=Msa0468660-mRNA-1 |
| chr3_3 | exon | 70349867 | 70350013 | 70349867 | ID=Msa0468660-mRNA-1:exon:17018;Parent=Msa0468660-mRNA-1 |
| chr3_3 | exon | 70350359 | 70350458 | 70350359 | ID=Msa0468660-mRNA-1:exon:17017;Parent=Msa0468660-mRNA-1 |
| chr3_3 | exon | 70350565 | 70350680 | 70350565 | ID=Msa0468660-mRNA-1:exon:17016;Parent=Msa0468660-mRNA-1 |
| chr3_3 | exon | 70350771 | 70350871 | 70350771 | ID=Msa0468660-mRNA-1:exon:17015;Parent=Msa0468660-mRNA-1 |
| chr3_3 | exon | 70350969 | 70351001 | 70350969 | ID=Msa0468660-mRNA-1:exon:17014;Parent=Msa0468660-mRNA-1 |
| chr3_3 | exon | 70351113 | 70351179 | 70351113 | ID=Msa0468660-mRNA-1:exon:17013;Parent=Msa0468660-mRNA-1 |
| chr3_3 | five_prime_UTR | 70351117 | 70351179 | 70351117 | ID=Msa0468660-mRNA-1:five_prime_utr;Parent=Msa0468660-mRNA-1 |
| chr3_3 | CDS | 70351113 | 70351116 | 70351113 | ID=Msa0468660-mRNA-1:cds;Parent=Msa0468660-mRNA-1 |
| chr3_3 | CDS | 70350969 | 70351001 | 70350969 | ID=Msa0468660-mRNA-1:cds;Parent=Msa0468660-mRNA-1 |
| chr3_3 | CDS | 70350771 | 70350871 | 70350771 | ID=Msa0468660-mRNA-1:cds;Parent=Msa0468660-mRNA-1 |
| chr3_3 | CDS | 70350565 | 70350680 | 70350565 | ID=Msa0468660-mRNA-1:cds;Parent=Msa0468660-mRNA-1 |
| chr3_3 | CDS | 70350359 | 70350458 | 70350359 | ID=Msa0468660-mRNA-1:cds;Parent=Msa0468660-mRNA-1 |
| chr3_3 | CDS | 70349867 | 70350013 | 70349867 | ID=Msa0468660-mRNA-1:cds;Parent=Msa0468660-mRNA-1 |
| chr3_3 | CDS | 70349713 | 70349773 | 70349713 | ID=Msa0468660-mRNA-1:cds;Parent=Msa0468660-mRNA-1 |
| chr3_3 | CDS | 70349443 | 70349540 | 70349443 | ID=Msa0468660-mRNA-1:cds;Parent=Msa0468660-mRNA-1 |
| chr3_3 | CDS | 70349192 | 70349334 | 70349192 | ID=Msa0468660-mRNA-1:cds;Parent=Msa0468660-mRNA-1 |
| chr3_3 | CDS | 70349015 | 70349098 | 70349015 | ID=Msa0468660-mRNA-1:cds;Parent=Msa0468660-mRNA-1 |
| chr3_3 | CDS | 70348823 | 70348912 | 70348823 | ID=Msa0468660-mRNA-1:cds;Parent=Msa0468660-mRNA-1 |
| chr3_3 | CDS | 70348676 | 70348721 | 70348676 | ID=Msa0468660-mRNA-1:cds;Parent=Msa0468660-mRNA-1 |
| chr3_3 | three_prime_UTR | 70348331 | 70348675 | 70348331 | ID=Msa0468660-mRNA-1:three_prime_utr;Parent=Msa0468660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
