Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558920 | XP_013457136.1 | 99.020 | 204 | 2 | 0 | 1 | 204 | 1 | 204 | 1.35e-142 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558920 | sp|Q6NQE2|FQRL1_ARATH | 85.427 | 199 | 29 | 0 | 4 | 202 | 3 | 201 | 1.07e-123 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558920 | A0A072UN88 | 99.020 | 204 | 2 | 0 | 1 | 204 | 1 | 204 | 6.47e-143 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012770 | Msa0558920 | 0.802925 | 4.450242e-49 | -8.615850e-47 |
| Msa0166990 | Msa0558920 | 0.812109 | 5.001390e-51 | -8.615850e-47 |
| Msa0558920 | Msa0620340 | 0.852150 | 5.575867e-61 | -8.615850e-47 |
| Msa0558920 | Msa0654090 | 0.800851 | 1.187181e-48 | -8.615850e-47 |
| Msa0558920 | Msa1046140 | 0.817361 | 3.431696e-52 | -8.615850e-47 |
| Msa0558920 | Msa1134020 | 0.802822 | 4.674888e-49 | -8.615850e-47 |
| Msa0558920 | Msa1380790 | 0.854725 | 1.016263e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558920 | MtrunA17_Chr4g0048841 | 97.475 | 198 | 5 | 0 | 7 | 204 | 41 | 238 | 7.24e-140 | 390 |
| Msa0558920 | MtrunA17_Chr2g0318961 | 83.333 | 198 | 33 | 0 | 4 | 201 | 3 | 200 | 4.63e-122 | 343 |
| Msa0558920 | MtrunA17_Chr8g0361451 | 82.323 | 198 | 35 | 0 | 4 | 201 | 3 | 200 | 6.15e-119 | 335 |
| Msa0558920 | MtrunA17_Chr2g0280641 | 76.617 | 201 | 47 | 0 | 4 | 204 | 3 | 203 | 2.23e-112 | 319 |
| Msa0558920 | MtrunA17_Chr5g0429671 | 69.802 | 202 | 60 | 1 | 1 | 201 | 1 | 202 | 1.88e-101 | 291 |
| Msa0558920 | MtrunA17_Chr4g0034601 | 67.005 | 197 | 64 | 1 | 5 | 200 | 52 | 248 | 1.30e-91 | 268 |
| Msa0558920 | MtrunA17_Chr5g0403681 | 63.725 | 204 | 73 | 1 | 1 | 203 | 49 | 252 | 8.36e-91 | 266 |
| Msa0558920 | MtrunA17_Chr4g0048831 | 90.833 | 120 | 7 | 1 | 85 | 204 | 1 | 116 | 7.16e-74 | 218 |
| Msa0558920 | MtrunA17_Chr8g0361461 | 79.487 | 117 | 24 | 0 | 85 | 201 | 1 | 117 | 5.92e-64 | 193 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558920 | AT4G27270.1 | 85.427 | 199 | 29 | 0 | 4 | 202 | 3 | 201 | 1.09e-124 | 350 |
| Msa0558920 | AT5G54500.1 | 84.500 | 200 | 31 | 0 | 4 | 203 | 3 | 202 | 2.47e-124 | 350 |
| Msa0558920 | AT4G27270.3 | 84.737 | 190 | 29 | 0 | 13 | 202 | 1 | 190 | 2.72e-117 | 332 |
| Msa0558920 | AT4G27270.2 | 84.737 | 190 | 29 | 0 | 13 | 202 | 1 | 190 | 2.72e-117 | 332 |
| Msa0558920 | AT5G58800.1 | 65.842 | 202 | 68 | 1 | 1 | 201 | 1 | 202 | 2.19e-97 | 281 |
| Msa0558920 | AT5G58800.2 | 65.842 | 202 | 68 | 1 | 1 | 201 | 1 | 202 | 2.19e-97 | 281 |
| Msa0558920 | AT5G54500.2 | 83.750 | 160 | 26 | 0 | 4 | 163 | 3 | 162 | 7.21e-97 | 281 |
| Msa0558920 | AT4G27270.4 | 86.000 | 150 | 21 | 0 | 53 | 202 | 1 | 150 | 1.20e-92 | 268 |
| Msa0558920 | AT4G36750.1 | 66.497 | 197 | 65 | 1 | 5 | 200 | 74 | 270 | 1.75e-91 | 269 |
Find 81 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCTTCCCGACAAGATT+TGG | 0.247346 | 4_1:+57965079 | Msa0558920:CDS |
| AAGAAGAAACAAAGTGGTTT+TGG | 0.290346 | 4_1:-57963159 | None:intergenic |
| ACCTCCGCAGGCAGAGTTTC+AGG | 0.301695 | 4_1:-57964974 | None:intergenic |
| CTCTGCCTGCGGAGGTCGTT+GGG | 0.320468 | 4_1:+57964981 | Msa0558920:CDS |
| TGCTACTTTGATCCACGTTT+TGG | 0.332112 | 4_1:+57966062 | Msa0558920:three_prime_UTR |
| ATAATTGGCACATCACTCTT+TGG | 0.334809 | 4_1:-57965019 | None:intergenic |
| GAGGCTGATGGTTTGTTGCT+TGG | 0.342120 | 4_1:+57965061 | Msa0558920:CDS |
| AGCGCATCAGGTGTAATAAT+TGG | 0.347422 | 4_1:-57965034 | None:intergenic |
| CATCAGGGGAAGTACTTTGC+TGG | 0.357702 | 4_1:+57965764 | Msa0558920:CDS |
| TGGCGTACTCAGGCACTTGC+AGG | 0.358990 | 4_1:+57965151 | Msa0558920:CDS |
| GTGCCCATTGGTTACACATT+TGG | 0.364441 | 4_1:+57965629 | Msa0558920:CDS |
| TGCTCAGTTTAAAGCATTCC+TGG | 0.369486 | 4_1:+57965111 | Msa0558920:CDS |
| GTTTGAGATGGAGAGCATAA+AGG | 0.387084 | 4_1:+57965661 | Msa0558920:CDS |
| ACTTTAGTGGTAGCCATTGA+TGG | 0.387732 | 4_1:-57963224 | None:intergenic |
| TTTGAGATGGAGAGCATAAA+GGG | 0.400626 | 4_1:+57965662 | Msa0558920:CDS |
| TGCGGAGGTCGTTGGGAAGA+TGG | 0.403064 | 4_1:+57964988 | Msa0558920:CDS |
| TTACACAATGTAAACTTTAG+TGG | 0.417852 | 4_1:-57963237 | None:intergenic |
| GGGTGGTTCCCCATATGGTT+CGG | 0.423157 | 4_1:+57965682 | Msa0558920:CDS |
| TAATTAACATCTTATTCTGT+TGG | 0.429715 | 4_1:-57965883 | None:intergenic |
| GCGAAGGTTCCCGAACCATA+TGG | 0.433025 | 4_1:-57965692 | None:intergenic |
| ACAGCCTACCGAGTTGGAAT+TGG | 0.433561 | 4_1:+57965730 | Msa0558920:CDS |
| GGTGGTTCCCCATATGGTTC+GGG | 0.436267 | 4_1:+57965683 | Msa0558920:CDS |
| TCAGCCTCAGGTAGCGCATC+AGG | 0.442003 | 4_1:-57965046 | None:intergenic |
| TCTCGTGCCGTCTCCGGCGA+AGG | 0.448926 | 4_1:-57965708 | None:intergenic |
| GCGGAGGTCGTTGGGAAGAT+GGG | 0.453021 | 4_1:+57964989 | Msa0558920:CDS |
| AAAGCATTCCTGGATGCAAC+TGG | 0.456257 | 4_1:+57965121 | Msa0558920:CDS |
| ATAAAGGGTGGTTCCCCATA+TGG | 0.462146 | 4_1:+57965677 | Msa0558920:CDS |
| CCCGACAAGATTTGGAATGA+TGG | 0.467275 | 4_1:+57965087 | Msa0558920:CDS |
| ATTGGTTACACATTTGGTGC+TGG | 0.468517 | 4_1:+57965635 | Msa0558920:CDS |
| TGGTGGATGAGAACGTTGAC+AGG | 0.470152 | 4_1:-57963139 | None:intergenic |
| ATTGGCTCAAGCTTTCCATC+AGG | 0.473009 | 4_1:+57965748 | Msa0558920:CDS |
| CGAAGGTTCCCGAACCATAT+GGG | 0.473122 | 4_1:-57965691 | None:intergenic |
| TATGGTTCGGGAACCTTCGC+CGG | 0.481405 | 4_1:+57965695 | Msa0558920:CDS |
| AGGCTGTCTCGTGCCGTCTC+CGG | 0.489257 | 4_1:-57965714 | None:intergenic |
| CCATCATTCCAAATCTTGTC+GGG | 0.494553 | 4_1:-57965087 | None:intergenic |
| TTTAGTTACTATTCTATGTA+CGG | 0.496466 | 4_1:+57964636 | Msa0558920:intron |
| GCCATCATTCCAAATCTTGT+CGG | 0.505362 | 4_1:-57965088 | None:intergenic |
| TTTAAAAGGCGCGGCTTCCG+TGG | 0.512381 | 4_1:+57964686 | Msa0558920:CDS |
| ATCTTCCCAACGACCTCCGC+AGG | 0.515536 | 4_1:-57964986 | None:intergenic |
| ACTCTGCCTGCGGAGGTCGT+TGG | 0.519015 | 4_1:+57964980 | Msa0558920:CDS |
| TCGGGAACCTTCGCCGGAGA+CGG | 0.520100 | 4_1:+57965701 | Msa0558920:CDS |
| AAAGGCGCGGCTTCCGTGGA+AGG | 0.522189 | 4_1:+57964690 | Msa0558920:CDS |
| ACACAACACTCTATGTATAG+AGG | 0.528438 | 4_1:-57965825 | None:intergenic |
| ATTGGCACATCACTCTTTGG+AGG | 0.535259 | 4_1:-57965016 | None:intergenic |
| CAGTAGGCACAAGAAGCAAT+TGG | 0.535822 | 4_1:+57966039 | Msa0558920:three_prime_UTR |
| GCACCAAATGTGTAACCAAT+GGG | 0.537151 | 4_1:-57965632 | None:intergenic |
| AGTAGAAGCAAAGCTATGGC+AGG | 0.545320 | 4_1:+57964713 | Msa0558920:CDS |
| AGCAACAAACCATCAGCCTC+AGG | 0.546743 | 4_1:-57965058 | None:intergenic |
| CACGAGACAGCCTACCGAGT+TGG | 0.547705 | 4_1:+57965724 | Msa0558920:CDS |
| TGGATGCAACTGGTGGCCTA+TGG | 0.551588 | 4_1:+57965131 | Msa0558920:CDS |
| GCACTTGCAGGAAAGCCTGC+AGG | 0.551589 | 4_1:+57965163 | Msa0558920:CDS |
| GTGCTGTAAAAGATTCCTGC+AGG | 0.556948 | 4_1:-57965178 | None:intergenic |
| CTTTGCTTCTACTCCTTCCA+CGG | 0.562351 | 4_1:-57964703 | None:intergenic |
| ATCACTCAGCTTGCTCACCA+TGG | 0.564969 | 4_1:+57965596 | Msa0558920:CDS |
| ATAGGCCACCAGTTGCATCC+AGG | 0.570687 | 4_1:-57965129 | None:intergenic |
| ACACATCTATCATCCATCAA+TGG | 0.572795 | 4_1:+57963211 | Msa0558920:exon |
| AGCACCAAATGTGTAACCAA+TGG | 0.574155 | 4_1:-57965633 | None:intergenic |
| TGGTGCTGGTATGTTTGAGA+TGG | 0.575960 | 4_1:+57965649 | Msa0558920:CDS |
| AAGGAGTAGAAGCAAAGCTA+TGG | 0.577868 | 4_1:+57964709 | Msa0558920:CDS |
| TGGTGGCCTATGGCGTACTC+AGG | 0.578013 | 4_1:+57965141 | Msa0558920:CDS |
| CAGCAAAGTACTTCCCCTGA+TGG | 0.579078 | 4_1:-57965763 | None:intergenic |
| TGGCTCAAGCTTTCCATCAG+GGG | 0.583615 | 4_1:+57965750 | Msa0558920:CDS |
| TTGGCTCAAGCTTTCCATCA+GGG | 0.591341 | 4_1:+57965749 | Msa0558920:CDS |
| GGCATTGCAAAGAAGCTCAA+AGG | 0.592964 | 4_1:+57965785 | Msa0558920:CDS |
| CAAGTGCCTGAGTACGCCAT+AGG | 0.599625 | 4_1:-57965147 | None:intergenic |
| ATGGTGAGCAAGCTGAGTGA+TGG | 0.600815 | 4_1:-57965594 | None:intergenic |
| TACAGCACTGGTTCTCAAGG+AGG | 0.602179 | 4_1:+57965193 | Msa0558920:CDS |
| GAGGTCGTTGGGAAGATGGG+AGG | 0.615091 | 4_1:+57964992 | Msa0558920:CDS |
| ACCTGAAACTCTGCCTGCGG+AGG | 0.615512 | 4_1:+57964973 | Msa0558920:CDS |
| GAAGGTTCCCGAACCATATG+GGG | 0.617327 | 4_1:-57965690 | None:intergenic |
| AGCACTGGTTCTCAAGGAGG+AGG | 0.618456 | 4_1:+57965196 | Msa0558920:CDS |
| TGAGCCAATTCCAACTCGGT+AGG | 0.619105 | 4_1:-57965734 | None:intergenic |
| GATGCGCTACCTGAGGCTGA+TGG | 0.631007 | 4_1:+57965049 | Msa0558920:CDS |
| AGCTTGAGCCAATTCCAACT+CGG | 0.640803 | 4_1:-57965738 | None:intergenic |
| TCGCAAAAGAAGAAACAAAG+TGG | 0.642438 | 4_1:-57963165 | None:intergenic |
| GGTGGATGAGAACGTTGACA+GGG | 0.651081 | 4_1:-57963138 | None:intergenic |
| GCATTCCTGGATGCAACTGG+TGG | 0.654481 | 4_1:+57965124 | Msa0558920:CDS |
| TACACCTGATGCGCTACCTG+AGG | 0.657213 | 4_1:+57965042 | Msa0558920:CDS |
| ACATCACCACTTCCAAAACG+TGG | 0.674908 | 4_1:-57966074 | None:intergenic |
| GGTACCTGAAACTCTGCCTG+CGG | 0.684253 | 4_1:+57964970 | Msa0558920:intron |
| GAGATGGAGAGCATAAAGGG+TGG | 0.732219 | 4_1:+57965665 | Msa0558920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTGAACATTTTAATT+TGG | - | chr4_1:57964838-57964857 | None:intergenic | 10.0% |
| !!! | TTTTTCTTTAATTAAGAAAT+GGG | - | chr4_1:57965274-57965293 | None:intergenic | 10.0% |
| !! | ATATATAAACAGTTTAAATT+TGG | - | chr4_1:57965430-57965449 | None:intergenic | 10.0% |
| !! | ACTTATTTGAATTTATATAT+TGG | - | chr4_1:57965519-57965538 | None:intergenic | 10.0% |
| !! | TATATAGATGAATTTGAATT+GGG | + | chr4_1:57963421-57963440 | Msa0558920:intron | 15.0% |
| !!! | TTTTTTTTTTGCAAATTCAA+AGG | - | chr4_1:57963604-57963623 | None:intergenic | 15.0% |
| !!! | AAAAAAAACTATTTTTTTGG+TGG | + | chr4_1:57963629-57963648 | Msa0558920:intron | 15.0% |
| !!! | AAAAAAACTATTTTTTTGGT+GGG | + | chr4_1:57963630-57963649 | Msa0558920:intron | 15.0% |
| !! | TATTTGAATATATGTTTCTT+TGG | + | chr4_1:57964225-57964244 | Msa0558920:intron | 15.0% |
| !! | TCTTATGAAAATGTAAAATA+TGG | + | chr4_1:57964268-57964287 | Msa0558920:intron | 15.0% |
| !! | ATAAAATAATTTATGTTGCT+TGG | + | chr4_1:57964515-57964534 | Msa0558920:intron | 15.0% |
| !!! | CTTTTTCTTTAATTAAGAAA+TGG | - | chr4_1:57965275-57965294 | None:intergenic | 15.0% |
| !! | CATTTCTTAATTAAAGAAAA+AGG | + | chr4_1:57965273-57965292 | Msa0558920:intron | 15.0% |
| !! | ACTGTTTATATATAAGTTAT+AGG | + | chr4_1:57965437-57965456 | Msa0558920:intron | 15.0% |
| !! | TTGAAATTTGAAAGAAAGAA+TGG | - | chr4_1:57963264-57963283 | None:intergenic | 20.0% |
| !! | ATATACCAAATTGATAAACT+GGG | - | chr4_1:57963406-57963425 | None:intergenic | 20.0% |
| !! | TATATACCAAATTGATAAAC+TGG | - | chr4_1:57963407-57963426 | None:intergenic | 20.0% |
| !! | GTATATAGATGAATTTGAAT+TGG | + | chr4_1:57963420-57963439 | Msa0558920:intron | 20.0% |
| !!! | ATAGTTTTACTTATTTCTGT+TGG | + | chr4_1:57963688-57963707 | Msa0558920:intron | 20.0% |
| !! | TTCATAAGAAATAATTGAGA+TGG | - | chr4_1:57964257-57964276 | None:intergenic | 20.0% |
| !! | TTTAGTTACTATTCTATGTA+CGG | + | chr4_1:57964636-57964655 | Msa0558920:intron | 20.0% |
| !! | TCAAATAAGTTAATCCAAAT+AGG | + | chr4_1:57965529-57965548 | Msa0558920:intron | 20.0% |
| !! | TAATTAACATCTTATTCTGT+TGG | - | chr4_1:57965886-57965905 | None:intergenic | 20.0% |
| !! | AGATGTTAATTAAAAAAGAG+AGG | + | chr4_1:57965894-57965913 | Msa0558920:three_prime_UTR | 20.0% |
| ! | TTACACAATGTAAACTTTAG+TGG | - | chr4_1:57963240-57963259 | None:intergenic | 25.0% |
| !! | TTTATCACTCTCTGAATTTT+TGG | + | chr4_1:57963360-57963379 | Msa0558920:intron | 25.0% |
| ! | TTGAATTCAAATACCCAAAA+GGG | - | chr4_1:57963519-57963538 | None:intergenic | 25.0% |
| ! | ATTGAATTCAAATACCCAAA+AGG | - | chr4_1:57963520-57963539 | None:intergenic | 25.0% |
| ! | ATTCTCTAATATGGTTTCAT+TGG | - | chr4_1:57963727-57963746 | None:intergenic | 25.0% |
| !!! | AGTTTTGTGATTCTCTAATA+TGG | - | chr4_1:57963736-57963755 | None:intergenic | 25.0% |
| ! | AAAAAAATTGTTTGAGCATG+AGG | + | chr4_1:57963760-57963779 | Msa0558920:intron | 25.0% |
| ! | TTTGTCTCAAAAAACTTCTT+AGG | - | chr4_1:57963829-57963848 | None:intergenic | 25.0% |
| ! | TAGCTTATATGAAAACAGTT+TGG | - | chr4_1:57963995-57964014 | None:intergenic | 25.0% |
| !! | CTTTTCCTTTTTATTCAAGA+AGG | + | chr4_1:57964045-57964064 | Msa0558920:intron | 25.0% |
| ! | AAGAAATAATTGAGATGGTT+GGG | - | chr4_1:57964252-57964271 | None:intergenic | 25.0% |
| ! | TAAGAAATAATTGAGATGGT+TGG | - | chr4_1:57964253-57964272 | None:intergenic | 25.0% |
| ! | AATATGGAAGCTTAATTGAT+TGG | + | chr4_1:57964284-57964303 | Msa0558920:intron | 25.0% |
| !!! | ACACTTTATCTGGTTTTTAT+TGG | + | chr4_1:57964455-57964474 | Msa0558920:intron | 25.0% |
| ! | TATAGCTTTCATAAGTCTTA+AGG | - | chr4_1:57964551-57964570 | None:intergenic | 25.0% |
| !! | ACCATTAGATATCTTTAAGA+TGG | + | chr4_1:57964857-57964876 | Msa0558920:intron | 25.0% |
| ! | ACCATCTTAAAGATATCTAA+TGG | - | chr4_1:57964861-57964880 | None:intergenic | 25.0% |
| !! | GATGATAATTTTGTAAATGC+AGG | - | chr4_1:57964939-57964958 | None:intergenic | 25.0% |
| ! | AATTATCATCTGATACGTAT+AGG | + | chr4_1:57964949-57964968 | Msa0558920:intron | 25.0% |
| ! | AGCAAACAAGCTTAAATATT+TGG | + | chr4_1:57965319-57965338 | Msa0558920:intron | 25.0% |
| ! | TGAAATCAGAAAATCAATCA+GGG | - | chr4_1:57965555-57965574 | None:intergenic | 25.0% |
| ! | TTGAAATCAGAAAATCAATC+AGG | - | chr4_1:57965556-57965575 | None:intergenic | 25.0% |
| !!! | TCTGATACTTTTTTGTATCA+TGG | + | chr4_1:57966122-57966141 | Msa0558920:three_prime_UTR | 25.0% |
| ! | AAGAAGAAACAAAGTGGTTT+TGG | - | chr4_1:57963162-57963181 | None:intergenic | 30.0% |
| TCAATCCCAGTTTATCAATT+TGG | + | chr4_1:57963398-57963417 | Msa0558920:intron | 30.0% | |
| TGAATTCAAATACCCAAAAG+GGG | - | chr4_1:57963518-57963537 | None:intergenic | 30.0% | |
| GAATAACTGTAAGAATGGAT+TGG | - | chr4_1:57963807-57963826 | None:intergenic | 30.0% | |
| CTTAGGAATAACTGTAAGAA+TGG | - | chr4_1:57963812-57963831 | None:intergenic | 30.0% | |
| TTTACAACCTTCTACTGAAA+AGG | - | chr4_1:57964098-57964117 | None:intergenic | 30.0% | |
| AGAAATAATTGAGATGGTTG+GGG | - | chr4_1:57964251-57964270 | None:intergenic | 30.0% | |
| TAAGTCAATCACACTTTATC+TGG | + | chr4_1:57964445-57964464 | Msa0558920:intron | 30.0% | |
| CAGATTCATGTAACATCATT+AGG | - | chr4_1:57964594-57964613 | None:intergenic | 30.0% | |
| ! | CTAGCTCAAGAGATTTTAAA+AGG | + | chr4_1:57964672-57964691 | Msa0558920:CDS | 30.0% |
| ! | TTGGTAGTAATAAGTCTTTC+TGG | + | chr4_1:57964736-57964755 | Msa0558920:intron | 30.0% |
| ! | ACATACCTCATTTTCTCTTT+AGG | + | chr4_1:57964761-57964780 | Msa0558920:intron | 30.0% |
| ! | CATACCTCATTTTCTCTTTA+GGG | + | chr4_1:57964762-57964781 | Msa0558920:intron | 30.0% |
| TGCAATCATTCGAAAAACAT+TGG | + | chr4_1:57964902-57964921 | Msa0558920:intron | 30.0% | |
| GCAATCATTCGAAAAACATT+GGG | + | chr4_1:57964903-57964922 | Msa0558920:intron | 30.0% | |
| AAACAAAACTGAGTGAGATT+CGG | - | chr4_1:57965245-57965264 | None:intergenic | 30.0% | |
| TTCTGATTTCAAAATTCTGC+AGG | + | chr4_1:57965564-57965583 | Msa0558920:intron | 30.0% | |
| !!! | ACTTTTTTGTATCATGGTCT+TGG | + | chr4_1:57966128-57966147 | Msa0558920:three_prime_UTR | 30.0% |
| !!! | CTTTTTTGTATCATGGTCTT+GGG | + | chr4_1:57966129-57966148 | Msa0558920:three_prime_UTR | 30.0% |
| !!! | AAGAAACAAAGTGGTTTTGG+TGG | - | chr4_1:57963159-57963178 | None:intergenic | 35.0% |
| TCGCAAAAGAAGAAACAAAG+TGG | - | chr4_1:57963168-57963187 | None:intergenic | 35.0% | |
| ACACATCTATCATCCATCAA+TGG | + | chr4_1:57963211-57963230 | Msa0558920:exon | 35.0% | |
| GAATTTGAATTGGGTCTTTG+AGG | + | chr4_1:57963430-57963449 | Msa0558920:intron | 35.0% | |
| TCATTTCTTACAACCGTGTT+CGG | + | chr4_1:57963873-57963892 | Msa0558920:intron | 35.0% | |
| CGCTACCTTCTTGAATAAAA+AGG | - | chr4_1:57964053-57964072 | None:intergenic | 35.0% | |
| CTTATCACAATTGCAAGCAA+AGG | - | chr4_1:57964197-57964216 | None:intergenic | 35.0% | |
| CTTTGCTTGCAATTGTGATA+AGG | + | chr4_1:57964195-57964214 | Msa0558920:intron | 35.0% | |
| TATGCATCAAGAGAGGAATA+TGG | - | chr4_1:57964397-57964416 | None:intergenic | 35.0% | |
| !! | TCAAGAGATTTTAAAAGGCG+CGG | + | chr4_1:57964677-57964696 | Msa0558920:CDS | 35.0% |
| AGTTCCCTAAAGAGAAAATG+AGG | - | chr4_1:57964769-57964788 | None:intergenic | 35.0% | |
| !! | TGTTTTTCGAATGATTGCAG+AGG | - | chr4_1:57964901-57964920 | None:intergenic | 35.0% |
| ATAATTGGCACATCACTCTT+TGG | - | chr4_1:57965022-57965041 | None:intergenic | 35.0% | |
| AACAAAACTGAGTGAGATTC+GGG | - | chr4_1:57965244-57965263 | None:intergenic | 35.0% | |
| AAAATCAATCAGGGCCTATT+TGG | - | chr4_1:57965546-57965565 | None:intergenic | 35.0% | |
| ! | TTTGAGATGGAGAGCATAAA+GGG | + | chr4_1:57965662-57965681 | Msa0558920:CDS | 35.0% |
| ACACAACACTCTATGTATAG+AGG | - | chr4_1:57965828-57965847 | None:intergenic | 35.0% | |
| ! | GTTTTCATTGAGATCACAGT+AGG | + | chr4_1:57966023-57966042 | Msa0558920:three_prime_UTR | 35.0% |
| ACTTTAGTGGTAGCCATTGA+TGG | - | chr4_1:57963227-57963246 | None:intergenic | 40.0% | |
| ! | AAAGGGGAATTGGTGATTGA+GGG | - | chr4_1:57963502-57963521 | None:intergenic | 40.0% |
| ! | AAAAGGGGAATTGGTGATTG+AGG | - | chr4_1:57963503-57963522 | None:intergenic | 40.0% |
| ! | TCAATCACCAATTCCCCTTT+TGG | + | chr4_1:57963502-57963521 | Msa0558920:intron | 40.0% |
| ! | CAATCACCAATTCCCCTTTT+GGG | + | chr4_1:57963503-57963522 | Msa0558920:intron | 40.0% |
| CAAATACCCAAAAGGGGAAT+TGG | - | chr4_1:57963512-57963531 | None:intergenic | 40.0% | |
| GTAAGCTGTTTATCCGAACA+CGG | - | chr4_1:57963889-57963908 | None:intergenic | 40.0% | |
| CAACCTTCTACTGAAAAGGT+GGG | - | chr4_1:57964094-57964113 | None:intergenic | 40.0% | |
| ACAACCTTCTACTGAAAAGG+TGG | - | chr4_1:57964095-57964114 | None:intergenic | 40.0% | |
| AGTATGCACTCTTGTCTACA+TGG | - | chr4_1:57964129-57964148 | None:intergenic | 40.0% | |
| ! | TGCATACTTTTGATCGAGTG+TGG | + | chr4_1:57964141-57964160 | Msa0558920:intron | 40.0% |
| !! | CATCACCAATGATGGATGAT+AGG | - | chr4_1:57964168-57964187 | None:intergenic | 40.0% |
| TACTAGCAGACAAAGCATGA+TGG | - | chr4_1:57964341-57964360 | None:intergenic | 40.0% | |
| ATCAAGAGAGGAATATGGTG+TGG | - | chr4_1:57964392-57964411 | None:intergenic | 40.0% | |
| TTCCTCTCTTGATGCATAAG+TGG | + | chr4_1:57964399-57964418 | Msa0558920:intron | 40.0% | |
| TACCACTTATGCATCAAGAG+AGG | - | chr4_1:57964404-57964423 | None:intergenic | 40.0% | |
| TCTCTTGATGCATAAGTGGT+AGG | + | chr4_1:57964403-57964422 | Msa0558920:intron | 40.0% | |
| AAGGAGTAGAAGCAAAGCTA+TGG | + | chr4_1:57964709-57964728 | Msa0558920:CDS | 40.0% | |
| TTTCGAATGATTGCAGAGGA+GGG | - | chr4_1:57964897-57964916 | None:intergenic | 40.0% | |
| ! | TTTTCGAATGATTGCAGAGG+AGG | - | chr4_1:57964898-57964917 | None:intergenic | 40.0% |
| AGCGCATCAGGTGTAATAAT+TGG | - | chr4_1:57965037-57965056 | None:intergenic | 40.0% | |
| CCATCATTCCAAATCTTGTC+GGG | - | chr4_1:57965090-57965109 | None:intergenic | 40.0% | |
| GCCATCATTCCAAATCTTGT+CGG | - | chr4_1:57965091-57965110 | None:intergenic | 40.0% | |
| ! | TGCTCAGTTTAAAGCATTCC+TGG | + | chr4_1:57965111-57965130 | Msa0558920:CDS | 40.0% |
| !!! | TTTTACAGCACTGGTTCTCA+AGG | + | chr4_1:57965190-57965209 | Msa0558920:CDS | 40.0% |
| !!! | CTCACTCAGTTTTGTTTCGA+AGG | + | chr4_1:57965248-57965267 | Msa0558920:intron | 40.0% |
| TGGGCACAAAAATCATTCCA+TGG | - | chr4_1:57965616-57965635 | None:intergenic | 40.0% | |
| ! | GGAATGATTTTTGTGCCCAT+TGG | + | chr4_1:57965617-57965636 | Msa0558920:CDS | 40.0% |
| GCACCAAATGTGTAACCAAT+GGG | - | chr4_1:57965635-57965654 | None:intergenic | 40.0% | |
| AGCACCAAATGTGTAACCAA+TGG | - | chr4_1:57965636-57965655 | None:intergenic | 40.0% | |
| !! | ATTGGTTACACATTTGGTGC+TGG | + | chr4_1:57965635-57965654 | Msa0558920:CDS | 40.0% |
| ! | GTTTGAGATGGAGAGCATAA+AGG | + | chr4_1:57965661-57965680 | Msa0558920:CDS | 40.0% |
| !!! | TGCTACTTTGATCCACGTTT+TGG | + | chr4_1:57966062-57966081 | Msa0558920:three_prime_UTR | 40.0% |
| !!! | TTTGATCCACGTTTTGGAAG+TGG | + | chr4_1:57966068-57966087 | Msa0558920:three_prime_UTR | 40.0% |
| ! | AGACCCACCTTTTCAGTAGA+AGG | + | chr4_1:57964088-57964107 | Msa0558920:intron | 45.0% |
| GTGGTCCTATCATCCATCAT+TGG | + | chr4_1:57964160-57964179 | Msa0558920:intron | 45.0% | |
| GGAAGAGTCATCACCAATGA+TGG | - | chr4_1:57964176-57964195 | None:intergenic | 45.0% | |
| CTTTGCTTCTACTCCTTCCA+CGG | - | chr4_1:57964706-57964725 | None:intergenic | 45.0% | |
| AGTAGAAGCAAAGCTATGGC+AGG | + | chr4_1:57964713-57964732 | Msa0558920:CDS | 45.0% | |
| ! | TTGCAGAGGAGGGTATAACT+TGG | - | chr4_1:57964887-57964906 | None:intergenic | 45.0% |
| ATTGGCACATCACTCTTTGG+AGG | - | chr4_1:57965019-57965038 | None:intergenic | 45.0% | |
| ! | CCCGACAAGATTTGGAATGA+TGG | + | chr4_1:57965087-57965106 | Msa0558920:CDS | 45.0% |
| ! | AAAGCATTCCTGGATGCAAC+TGG | + | chr4_1:57965121-57965140 | Msa0558920:CDS | 45.0% |
| GTGCTGTAAAAGATTCCTGC+AGG | - | chr4_1:57965181-57965200 | None:intergenic | 45.0% | |
| ! | GCAGGAATCTTTTACAGCAC+TGG | + | chr4_1:57965181-57965200 | Msa0558920:CDS | 45.0% |
| GAGTGAGATTCGGGAACTTA+CGG | - | chr4_1:57965235-57965254 | None:intergenic | 45.0% | |
| ! | GTGCCCATTGGTTACACATT+TGG | + | chr4_1:57965629-57965648 | Msa0558920:CDS | 45.0% |
| !! | TGGTGCTGGTATGTTTGAGA+TGG | + | chr4_1:57965649-57965668 | Msa0558920:CDS | 45.0% |
| ATAAAGGGTGGTTCCCCATA+TGG | + | chr4_1:57965677-57965696 | Msa0558920:CDS | 45.0% | |
| AGCTTGAGCCAATTCCAACT+CGG | - | chr4_1:57965741-57965760 | None:intergenic | 45.0% | |
| ! | ATTGGCTCAAGCTTTCCATC+AGG | + | chr4_1:57965748-57965767 | Msa0558920:CDS | 45.0% |
| TTGGCTCAAGCTTTCCATCA+GGG | + | chr4_1:57965749-57965768 | Msa0558920:CDS | 45.0% | |
| GGCATTGCAAAGAAGCTCAA+AGG | + | chr4_1:57965785-57965804 | Msa0558920:CDS | 45.0% | |
| CAGTAGGCACAAGAAGCAAT+TGG | + | chr4_1:57966039-57966058 | Msa0558920:three_prime_UTR | 45.0% | |
| ACATCACCACTTCCAAAACG+TGG | - | chr4_1:57966077-57966096 | None:intergenic | 45.0% | |
| !!! | AAAAAAAAAAACTATTTTTT+TGG | + | chr4_1:57963626-57963645 | Msa0558920:intron | 5.0% |
| GAAGCAAAGCTATGGCAGGT+TGG | + | chr4_1:57964717-57964736 | Msa0558920:intron | 50.0% | |
| AGCAACAAACCATCAGCCTC+AGG | - | chr4_1:57965061-57965080 | None:intergenic | 50.0% | |
| !! | GAGGCTGATGGTTTGTTGCT+TGG | + | chr4_1:57965061-57965080 | Msa0558920:CDS | 50.0% |
| CTTGGCTTCCCGACAAGATT+TGG | + | chr4_1:57965079-57965098 | Msa0558920:CDS | 50.0% | |
| !! | TACAGCACTGGTTCTCAAGG+AGG | + | chr4_1:57965193-57965212 | Msa0558920:CDS | 50.0% |
| ATGGTGAGCAAGCTGAGTGA+TGG | - | chr4_1:57965597-57965616 | None:intergenic | 50.0% | |
| ! | ATCACTCAGCTTGCTCACCA+TGG | + | chr4_1:57965596-57965615 | Msa0558920:CDS | 50.0% |
| ! | GAGATGGAGAGCATAAAGGG+TGG | + | chr4_1:57965665-57965684 | Msa0558920:CDS | 50.0% |
| GAAGGTTCCCGAACCATATG+GGG | - | chr4_1:57965693-57965712 | None:intergenic | 50.0% | |
| CGAAGGTTCCCGAACCATAT+GGG | - | chr4_1:57965694-57965713 | None:intergenic | 50.0% | |
| ! | ACAGCCTACCGAGTTGGAAT+TGG | + | chr4_1:57965730-57965749 | Msa0558920:CDS | 50.0% |
| TGAGCCAATTCCAACTCGGT+AGG | - | chr4_1:57965737-57965756 | None:intergenic | 50.0% | |
| TGGCTCAAGCTTTCCATCAG+GGG | + | chr4_1:57965750-57965769 | Msa0558920:CDS | 50.0% | |
| ! | CAGCAAAGTACTTCCCCTGA+TGG | - | chr4_1:57965766-57965785 | None:intergenic | 50.0% |
| !! | CATCAGGGGAAGTACTTTGC+TGG | + | chr4_1:57965764-57965783 | Msa0558920:CDS | 50.0% |
| ! | TTTAAAAGGCGCGGCTTCCG+TGG | + | chr4_1:57964686-57964705 | Msa0558920:CDS | 55.0% |
| GGTACCTGAAACTCTGCCTG+CGG | + | chr4_1:57964970-57964989 | Msa0558920:intron | 55.0% | |
| TACACCTGATGCGCTACCTG+AGG | + | chr4_1:57965042-57965061 | Msa0558920:CDS | 55.0% | |
| GCATTCCTGGATGCAACTGG+TGG | + | chr4_1:57965124-57965143 | Msa0558920:CDS | 55.0% | |
| ATAGGCCACCAGTTGCATCC+AGG | - | chr4_1:57965132-57965151 | None:intergenic | 55.0% | |
| TGGATGCAACTGGTGGCCTA+TGG | + | chr4_1:57965131-57965150 | Msa0558920:CDS | 55.0% | |
| CAAGTGCCTGAGTACGCCAT+AGG | - | chr4_1:57965150-57965169 | None:intergenic | 55.0% | |
| !! | AGCACTGGTTCTCAAGGAGG+AGG | + | chr4_1:57965196-57965215 | Msa0558920:CDS | 55.0% |
| GGGTGGTTCCCCATATGGTT+CGG | + | chr4_1:57965682-57965701 | Msa0558920:CDS | 55.0% | |
| GGTGGTTCCCCATATGGTTC+GGG | + | chr4_1:57965683-57965702 | Msa0558920:CDS | 55.0% | |
| GCGAAGGTTCCCGAACCATA+TGG | - | chr4_1:57965695-57965714 | None:intergenic | 55.0% | |
| ! | TATGGTTCGGGAACCTTCGC+CGG | + | chr4_1:57965695-57965714 | Msa0558920:CDS | 55.0% |
| ACCTGAAACTCTGCCTGCGG+AGG | + | chr4_1:57964973-57964992 | Msa0558920:CDS | 60.0% | |
| ACCTCCGCAGGCAGAGTTTC+AGG | - | chr4_1:57964977-57964996 | None:intergenic | 60.0% | |
| ATCTTCCCAACGACCTCCGC+AGG | - | chr4_1:57964989-57965008 | None:intergenic | 60.0% | |
| TGCGGAGGTCGTTGGGAAGA+TGG | + | chr4_1:57964988-57965007 | Msa0558920:CDS | 60.0% | |
| GCGGAGGTCGTTGGGAAGAT+GGG | + | chr4_1:57964989-57965008 | Msa0558920:CDS | 60.0% | |
| GAGGTCGTTGGGAAGATGGG+AGG | + | chr4_1:57964992-57965011 | Msa0558920:CDS | 60.0% | |
| TCAGCCTCAGGTAGCGCATC+AGG | - | chr4_1:57965049-57965068 | None:intergenic | 60.0% | |
| GATGCGCTACCTGAGGCTGA+TGG | + | chr4_1:57965049-57965068 | Msa0558920:CDS | 60.0% | |
| TGGTGGCCTATGGCGTACTC+AGG | + | chr4_1:57965141-57965160 | Msa0558920:CDS | 60.0% | |
| TGGCGTACTCAGGCACTTGC+AGG | + | chr4_1:57965151-57965170 | Msa0558920:CDS | 60.0% | |
| GCACTTGCAGGAAAGCCTGC+AGG | + | chr4_1:57965163-57965182 | Msa0558920:CDS | 60.0% | |
| CACGAGACAGCCTACCGAGT+TGG | + | chr4_1:57965724-57965743 | Msa0558920:CDS | 60.0% | |
| ! | AAAGGCGCGGCTTCCGTGGA+AGG | + | chr4_1:57964690-57964709 | Msa0558920:CDS | 65.0% |
| ACTCTGCCTGCGGAGGTCGT+TGG | + | chr4_1:57964980-57964999 | Msa0558920:CDS | 65.0% | |
| CTCTGCCTGCGGAGGTCGTT+GGG | + | chr4_1:57964981-57965000 | Msa0558920:CDS | 65.0% | |
| TCGGGAACCTTCGCCGGAGA+CGG | + | chr4_1:57965701-57965720 | Msa0558920:CDS | 65.0% | |
| AGGCTGTCTCGTGCCGTCTC+CGG | - | chr4_1:57965717-57965736 | None:intergenic | 65.0% | |
| TCTCGTGCCGTCTCCGGCGA+AGG | - | chr4_1:57965711-57965730 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 57963141 | 57966216 | 57963141 | ID=Msa0558920;Name=Msa0558920 |
| chr4_1 | mRNA | 57963141 | 57966216 | 57963141 | ID=Msa0558920-mRNA-1;Parent=Msa0558920;Name=Msa0558920-mRNA-1;_AED=0.23;_eAED=0.23;_QI=89|1|1|1|1|1|4|399|204 |
| chr4_1 | exon | 57963141 | 57963255 | 57963141 | ID=Msa0558920-mRNA-1:exon:17591;Parent=Msa0558920-mRNA-1 |
| chr4_1 | exon | 57964641 | 57964734 | 57964641 | ID=Msa0558920-mRNA-1:exon:17592;Parent=Msa0558920-mRNA-1 |
| chr4_1 | exon | 57964971 | 57965233 | 57964971 | ID=Msa0558920-mRNA-1:exon:17593;Parent=Msa0558920-mRNA-1 |
| chr4_1 | exon | 57965586 | 57966216 | 57965586 | ID=Msa0558920-mRNA-1:exon:17594;Parent=Msa0558920-mRNA-1 |
| chr4_1 | five_prime_UTR | 57963141 | 57963229 | 57963141 | ID=Msa0558920-mRNA-1:five_prime_utr;Parent=Msa0558920-mRNA-1 |
| chr4_1 | CDS | 57963230 | 57963255 | 57963230 | ID=Msa0558920-mRNA-1:cds;Parent=Msa0558920-mRNA-1 |
| chr4_1 | CDS | 57964641 | 57964734 | 57964641 | ID=Msa0558920-mRNA-1:cds;Parent=Msa0558920-mRNA-1 |
| chr4_1 | CDS | 57964971 | 57965233 | 57964971 | ID=Msa0558920-mRNA-1:cds;Parent=Msa0558920-mRNA-1 |
| chr4_1 | CDS | 57965586 | 57965817 | 57965586 | ID=Msa0558920-mRNA-1:cds;Parent=Msa0558920-mRNA-1 |
| chr4_1 | three_prime_UTR | 57965818 | 57966216 | 57965818 | ID=Msa0558920-mRNA-1:three_prime_utr;Parent=Msa0558920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
