Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712860 | XP_003612249.1 | 96.949 | 295 | 3 | 1 | 1 | 295 | 1 | 289 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712860 | sp|F4JZ24|P4H10_ARATH | 74.490 | 294 | 68 | 2 | 1 | 294 | 2 | 288 | 4.85e-165 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712860 | G7JYR0 | 96.949 | 295 | 3 | 1 | 1 | 295 | 1 | 289 | 0.0 | 589 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026780 | Msa0712860 | 0.810147 | 1.331937e-50 | -8.615850e-47 |
| Msa0063940 | Msa0712860 | 0.826857 | 2.154456e-54 | -8.615850e-47 |
| Msa0098240 | Msa0712860 | 0.800779 | 1.227927e-48 | -8.615850e-47 |
| Msa0610690 | Msa0712860 | 0.829647 | 4.578937e-55 | -8.615850e-47 |
| Msa0632420 | Msa0712860 | 0.805082 | 1.585208e-49 | -8.615850e-47 |
| Msa0651870 | Msa0712860 | 0.800983 | 1.115588e-48 | -8.615850e-47 |
| Msa0667030 | Msa0712860 | 0.812639 | 3.831236e-51 | -8.615850e-47 |
| Msa0712860 | Msa0742370 | -0.820692 | 5.995918e-53 | -8.615850e-47 |
| Msa0712860 | Msa0759230 | 0.802735 | 4.872060e-49 | -8.615850e-47 |
| Msa0712860 | Msa0779450 | -0.831001 | 2.137602e-55 | -8.615850e-47 |
| Msa0712860 | Msa0795750 | 0.818374 | 2.026989e-52 | -8.615850e-47 |
| Msa0712860 | Msa0800480 | 0.994307 | 3.386269e-206 | -8.615850e-47 |
| Msa0712860 | Msa0805390 | 0.803887 | 2.812305e-49 | -8.615850e-47 |
| Msa0712860 | Msa0831740 | 0.814498 | 1.493977e-51 | -8.615850e-47 |
| Msa0712860 | Msa0838480 | 0.824108 | 9.649582e-54 | -8.615850e-47 |
| Msa0712860 | Msa0842140 | 0.810086 | 1.372495e-50 | -8.615850e-47 |
| Msa0712860 | Msa0862480 | -0.823310 | 1.484238e-53 | -8.615850e-47 |
| Msa0712860 | Msa0940910 | 0.816895 | 4.367775e-52 | -8.615850e-47 |
| Msa0712860 | Msa0964020 | 0.835589 | 1.536543e-56 | -8.615850e-47 |
| Msa0712860 | Msa1032470 | 0.828533 | 8.527810e-55 | -8.615850e-47 |
| Msa0712860 | Msa1032480 | 0.818136 | 2.294639e-52 | -8.615850e-47 |
| Msa0712860 | Msa1122310 | -0.811172 | 7.995604e-51 | -8.615850e-47 |
| Msa0712860 | Msa1123780 | 0.814908 | 1.212499e-51 | -8.615850e-47 |
| Msa0712860 | Msa1169920 | 0.815384 | 9.504966e-52 | -8.615850e-47 |
| Msa0712860 | Msa1175350 | 0.804534 | 2.063319e-49 | -8.615850e-47 |
| Msa0712860 | Msa1197720 | 0.801865 | 7.359413e-49 | -8.615850e-47 |
| Msa0712860 | Msa1205890 | 0.807681 | 4.488168e-50 | -8.615850e-47 |
| Msa0712860 | Msa1207920 | -0.817582 | 3.060976e-52 | -8.615850e-47 |
| Msa0712860 | Msa1213040 | 0.826079 | 3.302502e-54 | -8.615850e-47 |
| Msa0712860 | Msa1235610 | 0.808527 | 2.964130e-50 | -8.615850e-47 |
| Msa0712860 | Msa1251410 | 0.816408 | 5.617016e-52 | -8.615850e-47 |
| Msa0712860 | Msa1258630 | 0.838276 | 3.166640e-57 | -8.615850e-47 |
| Msa0712860 | Msa1260220 | 0.845033 | 5.227259e-59 | -8.615850e-47 |
| Msa0712860 | Msa1277260 | 0.832374 | 9.805269e-56 | -8.615850e-47 |
| Msa0712860 | Msa1315890 | 0.826801 | 2.222678e-54 | -8.615850e-47 |
| Msa0712860 | Msa1323070 | 0.819381 | 1.196472e-52 | -8.615850e-47 |
| Msa0712860 | Msa1329750 | 0.819068 | 1.410333e-52 | -8.615850e-47 |
| Msa0712860 | Msa1364350 | -0.803966 | 2.709157e-49 | -8.615850e-47 |
| Msa0712860 | Msa1376660 | 0.837638 | 4.617993e-57 | -8.615850e-47 |
| Msa0712860 | Msa1384700 | 0.805468 | 1.315648e-49 | -8.615850e-47 |
| Msa0712860 | Msa1385730 | 0.812374 | 4.378958e-51 | -8.615850e-47 |
| Msa0712860 | Msa1400970 | 0.824316 | 8.623578e-54 | -8.615850e-47 |
| Msa0712860 | Msa1418070 | 0.804924 | 1.710204e-49 | -8.615850e-47 |
| Msa0712860 | Msa1439250 | 0.818113 | 2.321969e-52 | -8.615850e-47 |
| Msa0712860 | Msa1442980 | 0.821797 | 3.335515e-53 | -8.615850e-47 |
| Msa0122530 | Msa0712860 | 0.803784 | 2.954706e-49 | -8.615850e-47 |
| Msa0140770 | Msa0712860 | -0.801925 | 7.152816e-49 | -8.615850e-47 |
| Msa0148960 | Msa0712860 | 0.820735 | 5.861575e-53 | -8.615850e-47 |
| Msa0167710 | Msa0712860 | 0.809174 | 2.155356e-50 | -8.615850e-47 |
| Msa0202490 | Msa0712860 | 0.822779 | 1.973129e-53 | -8.615850e-47 |
| Msa0228490 | Msa0712860 | 0.837145 | 6.178816e-57 | -8.615850e-47 |
| Msa0385500 | Msa0712860 | 0.800814 | 1.207742e-48 | -8.615850e-47 |
| Msa0472930 | Msa0712860 | 0.802139 | 6.463417e-49 | -8.615850e-47 |
| Msa0479760 | Msa0712860 | -0.803316 | 3.695494e-49 | -8.615850e-47 |
| Msa0256140 | Msa0712860 | 0.824060 | 9.902458e-54 | -8.615850e-47 |
| Msa0284180 | Msa0712860 | 0.813971 | 1.953881e-51 | -8.615850e-47 |
| Msa0293720 | Msa0712860 | 0.802763 | 4.808158e-49 | -8.615850e-47 |
| Msa0319920 | Msa0712860 | 0.801812 | 7.546703e-49 | -8.615850e-47 |
| Msa0343500 | Msa0712860 | 0.812199 | 4.781741e-51 | -8.615850e-47 |
| Msa0355080 | Msa0712860 | -0.828788 | 7.399425e-55 | -8.615850e-47 |
| Msa0532230 | Msa0712860 | 0.814711 | 1.340796e-51 | -8.615850e-47 |
| Msa0549950 | Msa0712860 | 0.800078 | 1.705655e-48 | -8.615850e-47 |
| Msa0566940 | Msa0712860 | -0.832852 | 7.460012e-56 | -8.615850e-47 |
| Msa0577690 | Msa0712860 | 0.820565 | 6.413202e-53 | -8.615850e-47 |
| Msa0579080 | Msa0712860 | 0.826102 | 3.261768e-54 | -8.615850e-47 |
| Msa0579160 | Msa0712860 | 0.847900 | 8.627033e-60 | -8.615850e-47 |
| Msa0579220 | Msa0712860 | 0.852441 | 4.607954e-61 | -8.615850e-47 |
| Msa0592330 | Msa0712860 | 0.804574 | 2.023377e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712860 | MtrunA17_Chr5g0406051 | 96.949 | 295 | 3 | 1 | 1 | 295 | 1 | 289 | 0.0 | 589 |
| Msa0712860 | MtrunA17_Chr3g0143381 | 64.068 | 295 | 91 | 3 | 1 | 295 | 1 | 280 | 8.18e-141 | 398 |
| Msa0712860 | MtrunA17_Chr8g0371221 | 67.677 | 297 | 75 | 5 | 1 | 295 | 1 | 278 | 1.44e-140 | 397 |
| Msa0712860 | MtrunA17_Chr8g0371251 | 62.925 | 294 | 93 | 3 | 1 | 294 | 1 | 278 | 1.37e-134 | 382 |
| Msa0712860 | MtrunA17_Chr8g0371281 | 62.799 | 293 | 91 | 3 | 1 | 293 | 1 | 275 | 5.02e-132 | 375 |
| Msa0712860 | MtrunA17_Chr8g0371231 | 69.417 | 206 | 57 | 1 | 88 | 293 | 2 | 201 | 1.23e-104 | 303 |
| Msa0712860 | MtrunA17_Chr8g0371241 | 69.061 | 181 | 33 | 3 | 110 | 290 | 1 | 158 | 1.15e-83 | 249 |
| Msa0712860 | MtrunA17_Chr6g0452281 | 55.300 | 217 | 90 | 2 | 78 | 294 | 51 | 260 | 6.45e-83 | 252 |
| Msa0712860 | MtrunA17_Chr2g0286811 | 54.955 | 222 | 86 | 3 | 78 | 293 | 40 | 253 | 6.68e-81 | 246 |
| Msa0712860 | MtrunA17_Chr3g0143361 | 64.324 | 185 | 54 | 2 | 110 | 294 | 1 | 173 | 3.70e-79 | 238 |
| Msa0712860 | MtrunA17_Chr4g0066531 | 51.802 | 222 | 91 | 3 | 78 | 293 | 37 | 248 | 2.54e-76 | 234 |
| Msa0712860 | MtrunA17_Chr1g0213811 | 49.785 | 233 | 95 | 5 | 65 | 289 | 58 | 276 | 6.44e-68 | 213 |
| Msa0712860 | MtrunA17_Chr3g0143371 | 61.963 | 163 | 51 | 2 | 110 | 272 | 1 | 152 | 1.26e-64 | 200 |
| Msa0712860 | MtrunA17_Chr3g0143351 | 56.216 | 185 | 68 | 3 | 110 | 294 | 1 | 172 | 4.29e-63 | 197 |
| Msa0712860 | MtrunA17_Chr4g0053801 | 47.222 | 216 | 97 | 8 | 79 | 289 | 86 | 289 | 2.70e-59 | 191 |
| Msa0712860 | MtrunA17_Chr5g0401481 | 41.150 | 226 | 112 | 6 | 79 | 289 | 84 | 303 | 1.10e-49 | 167 |
| Msa0712860 | MtrunA17_Chr6g0470551 | 28.839 | 267 | 156 | 9 | 28 | 290 | 4 | 240 | 3.37e-30 | 115 |
| Msa0712860 | MtrunA17_Chr3g0098671 | 61.429 | 70 | 25 | 2 | 164 | 232 | 29 | 97 | 2.68e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712860 | AT5G66060.1 | 74.490 | 294 | 68 | 2 | 1 | 294 | 2 | 288 | 4.93e-166 | 462 |
| Msa0712860 | AT1G20270.1 | 69.388 | 294 | 82 | 3 | 1 | 294 | 1 | 286 | 6.79e-154 | 432 |
| Msa0712860 | AT2G17720.1 | 69.655 | 290 | 82 | 1 | 5 | 294 | 7 | 290 | 2.99e-141 | 400 |
| Msa0712860 | AT4G35810.1 | 70.656 | 259 | 67 | 2 | 38 | 293 | 37 | 289 | 9.71e-136 | 386 |
| Msa0712860 | AT4G35810.2 | 70.656 | 259 | 67 | 2 | 38 | 293 | 37 | 289 | 9.71e-136 | 386 |
| Msa0712860 | AT5G66060.2 | 70.000 | 250 | 66 | 3 | 1 | 250 | 2 | 242 | 6.98e-126 | 359 |
| Msa0712860 | AT1G20270.2 | 64.115 | 209 | 67 | 3 | 1 | 209 | 1 | 201 | 1.01e-93 | 276 |
| Msa0712860 | AT1G20270.3 | 64.115 | 209 | 67 | 3 | 1 | 209 | 1 | 201 | 1.01e-93 | 276 |
| Msa0712860 | AT3G28480.1 | 45.387 | 271 | 138 | 4 | 24 | 294 | 5 | 265 | 2.83e-80 | 246 |
| Msa0712860 | AT5G18900.1 | 53.670 | 218 | 93 | 2 | 78 | 293 | 37 | 248 | 9.69e-79 | 241 |
| Msa0712860 | AT3G06300.1 | 53.881 | 219 | 91 | 3 | 78 | 293 | 38 | 249 | 2.65e-77 | 238 |
| Msa0712860 | AT3G28490.1 | 52.804 | 214 | 93 | 3 | 81 | 293 | 35 | 241 | 5.27e-75 | 231 |
| Msa0712860 | AT4G35820.1 | 55.340 | 206 | 56 | 4 | 75 | 272 | 85 | 262 | 4.82e-70 | 218 |
| Msa0712860 | AT3G28480.2 | 42.652 | 279 | 142 | 6 | 24 | 294 | 5 | 273 | 1.20e-69 | 219 |
| Msa0712860 | AT2G43080.1 | 52.995 | 217 | 80 | 5 | 79 | 289 | 78 | 278 | 6.44e-69 | 216 |
| Msa0712860 | AT4G33910.1 | 38.926 | 298 | 149 | 11 | 7 | 289 | 3 | 282 | 4.92e-55 | 180 |
| Msa0712860 | AT2G23096.1 | 35.018 | 277 | 164 | 6 | 20 | 293 | 10 | 273 | 1.95e-46 | 157 |
| Msa0712860 | AT4G25600.1 | 31.731 | 208 | 110 | 6 | 81 | 288 | 62 | 237 | 4.79e-24 | 99.4 |
| Msa0712860 | AT2G43080.2 | 49.038 | 104 | 45 | 2 | 79 | 180 | 78 | 175 | 2.26e-22 | 92.4 |
| Msa0712860 | AT4G25600.3 | 31.034 | 203 | 108 | 6 | 86 | 288 | 6 | 176 | 2.49e-21 | 90.5 |
| Msa0712860 | AT4G25600.4 | 31.034 | 203 | 108 | 6 | 86 | 288 | 3 | 173 | 2.84e-21 | 90.5 |
| Msa0712860 | AT4G25600.2 | 31.034 | 203 | 108 | 6 | 86 | 288 | 15 | 185 | 3.99e-21 | 90.1 |
Find 80 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTATTTGTTTATTGTATT+TGG | 0.146898 | 5_1:+4664791 | None:intergenic |
| TAGAGAAGGCCCCACATAAA+TGG | 0.239782 | 5_1:+4664665 | None:intergenic |
| GGTGGTTGTCCGGTAATTAA+AGG | 0.264632 | 5_1:-4665891 | Msa0712860:CDS |
| GGTATACTTGTTACATCTAT+TGG | 0.280373 | 5_1:+4664751 | None:intergenic |
| CACTTATTTCCTTTAATTAC+CGG | 0.297860 | 5_1:+4665882 | None:intergenic |
| AGTAAAGCATCACCTCTCTT+TGG | 0.342180 | 5_1:+4666113 | None:intergenic |
| GCTGAGACTTTGCACATGAT+TGG | 0.347183 | 5_1:+4664941 | None:intergenic |
| GAGGTAAGATCGTTGGGTTT+AGG | 0.404374 | 5_1:+4668966 | None:intergenic |
| GATGAATATAACACAAAGAA+TGG | 0.412374 | 5_1:-4666380 | Msa0712860:CDS |
| CTGAAATTCCCCTTAGCAGC+AGG | 0.415882 | 5_1:+4666194 | None:intergenic |
| ACTTCGTACAATGGAGCTTA+AGG | 0.418011 | 5_1:-4664914 | Msa0712860:three_prime_UTR |
| ATGAATATAACACAAAGAAT+GGG | 0.423938 | 5_1:-4666379 | Msa0712860:CDS |
| TTCATTGACGCGGATCCATT+TGG | 0.424011 | 5_1:+4665851 | None:intergenic |
| TCTGTTGTTGCCCATTTATG+TGG | 0.428208 | 5_1:-4664676 | Msa0712860:three_prime_UTR |
| GTAGAGGGTGGAAGAAAGAA+TGG | 0.429971 | 5_1:+4669238 | None:intergenic |
| AAACGTTTGCAGCGTGATGC+GGG | 0.430352 | 5_1:-4664882 | Msa0712860:three_prime_UTR |
| CAAGTTCTACATTATGAAGT+TGG | 0.432869 | 5_1:-4666437 | Msa0712860:CDS |
| TGTAGAGTGCGTACGAGCTC+TGG | 0.433588 | 5_1:-4666860 | Msa0712860:intron |
| CTGTTGTTGCCCATTTATGT+GGG | 0.443084 | 5_1:-4664675 | Msa0712860:three_prime_UTR |
| ACTTGAGTATATGTTACAAT+AGG | 0.464471 | 5_1:-4665822 | Msa0712860:intron |
| ATAACTTTCAGGTGGTTGTC+CGG | 0.466448 | 5_1:-4665901 | Msa0712860:intron |
| AAATGATGATGAAGAAGGTA+AGG | 0.476008 | 5_1:-4668832 | Msa0712860:CDS |
| CAGATATTCACATTCCTCCT+TGG | 0.476063 | 5_1:+4667074 | None:intergenic |
| AGAGAAGGCCCCACATAAAT+GGG | 0.480791 | 5_1:+4664666 | None:intergenic |
| AAACGAGAAGAATGAGGATA+AGG | 0.480852 | 5_1:+4669027 | None:intergenic |
| ACAGTTGTTGATAGCGAGAC+TGG | 0.480980 | 5_1:-4667018 | Msa0712860:CDS |
| AACAATGGAGGTAAGATCGT+TGG | 0.490361 | 5_1:+4668959 | None:intergenic |
| ACAATGGAGGTAAGATCGTT+GGG | 0.491811 | 5_1:+4668960 | None:intergenic |
| ACTGTTGACTTGTGCATACT+CGG | 0.491867 | 5_1:+4667036 | None:intergenic |
| GATGCATCTAAAGTTGCATC+CGG | 0.502828 | 5_1:+4666074 | None:intergenic |
| TATAATGAGCTTTCTGATTG+TGG | 0.504044 | 5_1:-4666158 | Msa0712860:CDS |
| ATAAGTGGTCAAGTACCAAA+TGG | 0.506402 | 5_1:-4665866 | Msa0712860:CDS |
| GACAGTGTTCCCTGCTGCTA+AGG | 0.510901 | 5_1:-4666204 | Msa0712860:CDS |
| AGTGGGTTGAAGTTGTATCA+TGG | 0.519666 | 5_1:-4668803 | Msa0712860:CDS |
| TTAGATGCATCAAGCTTGCA+TGG | 0.521772 | 5_1:-4666062 | Msa0712860:intron |
| AACAAATAACAATGATACAC+AGG | 0.523177 | 5_1:+4664703 | None:intergenic |
| TACAGTACAGATGTTGAAGA+AGG | 0.524814 | 5_1:-4666233 | Msa0712860:intron |
| ATAATGAGCTTTCTGATTGT+GGG | 0.530607 | 5_1:-4666157 | Msa0712860:CDS |
| AAGAAGGTAAGGGTGAACAG+TGG | 0.530724 | 5_1:-4668821 | Msa0712860:CDS |
| ACAGTGTTCCCTGCTGCTAA+GGG | 0.531155 | 5_1:-4666203 | Msa0712860:CDS |
| TTGTGATACACAAAAGCTCT+AGG | 0.533206 | 5_1:+4668777 | None:intergenic |
| CTGGAAAGAGCAAAGACAGC+AGG | 0.539433 | 5_1:-4666999 | Msa0712860:intron |
| ATTAGAAATGATGATGAAGA+AGG | 0.541569 | 5_1:-4668837 | Msa0712860:intron |
| CACAATCTTATCACGTCCCC+TGG | 0.546111 | 5_1:+4666826 | None:intergenic |
| CAGTACAGATGTTGAAGAAG+GGG | 0.549364 | 5_1:-4666231 | Msa0712860:CDS |
| AGGTGGGGTTACTTGCCTAC+AGG | 0.550750 | 5_1:+4666764 | None:intergenic |
| GTGGGTTGAAGTTGTATCAT+GGG | 0.551409 | 5_1:-4668802 | Msa0712860:CDS |
| GAAACGTTTGCAGCGTGATG+CGG | 0.564649 | 5_1:-4664883 | Msa0712860:three_prime_UTR |
| AGAAGGTAAGGGTGAACAGT+GGG | 0.565306 | 5_1:-4668820 | Msa0712860:CDS |
| AATGGAGCTTAAGGTCTCAA+AGG | 0.569975 | 5_1:-4664905 | Msa0712860:three_prime_UTR |
| ATACACAGGGCAAATGAGAT+CGG | 0.574222 | 5_1:+4664717 | None:intergenic |
| ATACTGTTACGACTAGGTAG+AGG | 0.575003 | 5_1:+4669222 | None:intergenic |
| ACAGTACAGATGTTGAAGAA+GGG | 0.576370 | 5_1:-4666232 | Msa0712860:intron |
| TGTTGTTGCCCATTTATGTG+GGG | 0.590515 | 5_1:-4664674 | Msa0712860:three_prime_UTR |
| TGAAATTCCCCTTAGCAGCA+GGG | 0.595044 | 5_1:+4666195 | None:intergenic |
| AATGATGATGAAGAAGGTAA+GGG | 0.600100 | 5_1:-4668831 | Msa0712860:CDS |
| TTCCGAAAACGAGAAGAATG+AGG | 0.600315 | 5_1:+4669021 | None:intergenic |
| CGGTAATTAAAGGAAATAAG+TGG | 0.603669 | 5_1:-4665881 | Msa0712860:CDS |
| AACGTTTGCAGCGTGATGCG+GGG | 0.604419 | 5_1:-4664881 | Msa0712860:three_prime_UTR |
| TGAATATAACACAAAGAATG+GGG | 0.607097 | 5_1:-4666378 | Msa0712860:CDS |
| GATTGGAAGAAGGAATGGAG+AGG | 0.608811 | 5_1:+4668997 | None:intergenic |
| CTTTCAATTAAGCCAAAGAG+AGG | 0.612559 | 5_1:-4666125 | Msa0712860:CDS |
| CAATATACAGAGCACGGTGA+AGG | 0.613394 | 5_1:-4666464 | Msa0712860:intron |
| TTGTTCATAACACCGTCGAT+AGG | 0.618672 | 5_1:-4668941 | Msa0712860:intron |
| ATCGACGGTGTTATGAACAA+TGG | 0.621359 | 5_1:+4668944 | None:intergenic |
| TACTGTTACGACTAGGTAGA+GGG | 0.634805 | 5_1:+4669223 | None:intergenic |
| CAGTGTTCCCTGCTGCTAAG+GGG | 0.641768 | 5_1:-4666202 | Msa0712860:CDS |
| TCAGCTAATACTTCGTACAA+TGG | 0.650505 | 5_1:-4664923 | Msa0712860:three_prime_UTR |
| TCAAGAAAGTAGTCATAGTG+AGG | 0.653721 | 5_1:+4666401 | None:intergenic |
| GACGGTGTTATGAACAATGG+AGG | 0.664067 | 5_1:+4668947 | None:intergenic |
| GAATATAACACAAAGAATGG+GGG | 0.666678 | 5_1:-4666377 | Msa0712860:CDS |
| TTTGTAATACTGTTACGACT+AGG | 0.667886 | 5_1:+4669216 | None:intergenic |
| GGAATTTCAGTAATGTGCCG+TGG | 0.673959 | 5_1:-4666181 | Msa0712860:CDS |
| ACAGAAACGTTACCTATCGA+CGG | 0.683390 | 5_1:+4668929 | None:intergenic |
| GGGGACGTGATAAGATTGTG+AGG | 0.685334 | 5_1:-4666823 | Msa0712860:CDS |
| ACAAATAACAATGATACACA+GGG | 0.687341 | 5_1:+4664704 | None:intergenic |
| TGTTACGACTAGGTAGAGGG+TGG | 0.700244 | 5_1:+4669226 | None:intergenic |
| AGTACAGATGTTGAAGAAGG+GGG | 0.701130 | 5_1:-4666230 | Msa0712860:CDS |
| TCAGAAAGCTCATTATACCA+CGG | 0.716313 | 5_1:+4666164 | None:intergenic |
| ATAATCTGAGTAGACCAAGG+AGG | 0.746271 | 5_1:-4667088 | Msa0712860:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTTGTAAGTTATAT+TGG | + | chr5_1:4665568-4665587 | None:intergenic | 10.0% |
| !!! | TAAAAAAGAAATTAATTTTG+CGG | - | chr5_1:4666513-4666532 | Msa0712860:intron | 10.0% |
| !!! | ATATTAAATTACTTTTTTGA+GGG | + | chr5_1:4668442-4668461 | None:intergenic | 10.0% |
| !!! | ATGAACTATATATATGTTTT+TGG | - | chr5_1:4665290-4665309 | Msa0712860:intron | 15.0% |
| !!! | TATATGCCATTTATATATTA+AGG | - | chr5_1:4665415-4665434 | Msa0712860:intron | 15.0% |
| !!! | ATATGCCATTTATATATTAA+GGG | - | chr5_1:4665416-4665435 | Msa0712860:intron | 15.0% |
| !!! | AAGTTAGTTTTTTGTTTTAA+AGG | - | chr5_1:4666028-4666047 | Msa0712860:intron | 15.0% |
| !!! | AGTTAGTTTTTTGTTTTAAA+GGG | - | chr5_1:4666029-4666048 | Msa0712860:intron | 15.0% |
| !! | CATGAAATAGAATAAAAATT+GGG | - | chr5_1:4666176-4666195 | Msa0712860:CDS | 15.0% |
| !! | ATGAAATAGAATAAAAATTG+GGG | - | chr5_1:4666177-4666196 | Msa0712860:CDS | 15.0% |
| !!! | AAAAAAAAGAGTTAATTTTG+TGG | - | chr5_1:4666315-4666334 | Msa0712860:intron | 15.0% |
| !!! | AAAAAAAGAGTTAATTTTGT+GGG | - | chr5_1:4666316-4666335 | Msa0712860:intron | 15.0% |
| !!! | AAAAAAGAAATTAATTTTGC+GGG | - | chr5_1:4666514-4666533 | Msa0712860:intron | 15.0% |
| !! | TAATATTACACAATCATTAA+GGG | - | chr5_1:4666557-4666576 | Msa0712860:intron | 15.0% |
| !! | AAAAAGTAAATATAATAGGT+GGG | + | chr5_1:4667199-4667218 | None:intergenic | 15.0% |
| !! | AAAAAAGTAAATATAATAGG+TGG | + | chr5_1:4667200-4667219 | None:intergenic | 15.0% |
| !!! | TATTAAATTACTTTTTTGAG+GGG | + | chr5_1:4668441-4668460 | None:intergenic | 15.0% |
| !!! | GATATTAAATTACTTTTTTG+AGG | + | chr5_1:4668443-4668462 | None:intergenic | 15.0% |
| !!! | GTTAATTTTTTTTCATACAA+GGG | + | chr5_1:4668698-4668717 | None:intergenic | 15.0% |
| !! | ATAAGTTATTACTGTAATTA+TGG | + | chr5_1:4668731-4668750 | None:intergenic | 15.0% |
| !! | TACATATAAATGAAAAAGAT+GGG | + | chr5_1:4669133-4669152 | None:intergenic | 15.0% |
| !! | ACTTATTTGTTTATTGTATT+TGG | + | chr5_1:4669156-4669175 | None:intergenic | 15.0% |
| !! | TATGAATCGCATTAATAAAA+TGG | + | chr5_1:4665255-4665274 | None:intergenic | 20.0% |
| !!! | ATAAGTTTTGTGAAAATGTT+TGG | - | chr5_1:4665476-4665495 | Msa0712860:intron | 20.0% |
| !!! | TATATTTCATAAGCTGTTTT+CGG | - | chr5_1:4665694-4665713 | Msa0712860:intron | 20.0% |
| !! | AAAAAACACTATTCCAAATT+AGG | + | chr5_1:4666062-4666081 | None:intergenic | 20.0% |
| !! | GCATGAAATAGAATAAAAAT+TGG | - | chr5_1:4666175-4666194 | Msa0712860:CDS | 20.0% |
| !! | TGAAATAGAATAAAAATTGG+GGG | - | chr5_1:4666178-4666197 | Msa0712860:CDS | 20.0% |
| !!! | AAAAAAGAGTTAATTTTGTG+GGG | - | chr5_1:4666317-4666336 | Msa0712860:intron | 20.0% |
| !!! | AAAAAGAAATTAATTTTGCG+GGG | - | chr5_1:4666515-4666534 | Msa0712860:intron | 20.0% |
| !! | CTAATATTACACAATCATTA+AGG | - | chr5_1:4666556-4666575 | Msa0712860:intron | 20.0% |
| !! | ACTAAAATCATATTCAAACA+TGG | + | chr5_1:4666728-4666747 | None:intergenic | 20.0% |
| !! | AAAAGTAAATATAATAGGTG+GGG | + | chr5_1:4667198-4667217 | None:intergenic | 20.0% |
| !! | TTACAAAAAGAGTTTATTTC+TGG | - | chr5_1:4667247-4667266 | Msa0712860:intron | 20.0% |
| !! | ATGAATATAACACAAAGAAT+GGG | - | chr5_1:4667565-4667584 | Msa0712860:intron | 20.0% |
| !! | AGAAAGAAAAAAAACAGAAT+AGG | + | chr5_1:4668329-4668348 | None:intergenic | 20.0% |
| !!! | CTGTTTTTTTTCTTTCTTTA+AGG | - | chr5_1:4668332-4668351 | Msa0712860:intron | 20.0% |
| !!! | TTTTTTTTCTTTCTTTAAGG+TGG | - | chr5_1:4668335-4668354 | Msa0712860:intron | 20.0% |
| !!! | TTTTTTTCTTTCTTTAAGGT+GGG | - | chr5_1:4668336-4668355 | Msa0712860:intron | 20.0% |
| !!! | ATTAAATTACTTTTTTGAGG+GGG | + | chr5_1:4668440-4668459 | None:intergenic | 20.0% |
| !!! | CGTTAATTTTTTTTCATACA+AGG | + | chr5_1:4668699-4668718 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGTTTAATAGCTT+AGG | - | chr5_1:4669094-4669113 | Msa0712860:CDS | 20.0% |
| !! | GTACATATAAATGAAAAAGA+TGG | + | chr5_1:4669134-4669153 | None:intergenic | 20.0% |
| ! | ATCTGAAAAAATTCAACAGA+TGG | + | chr5_1:4664781-4664800 | None:intergenic | 25.0% |
| !! | ATTAGAAATGATGATGAAGA+AGG | - | chr5_1:4665107-4665126 | Msa0712860:intron | 25.0% |
| !! | TTTTGTGTATCACAATTTTC+TGG | - | chr5_1:4665175-4665194 | Msa0712860:intron | 25.0% |
| ! | AATAAGTTGTTTACACAAAC+AGG | - | chr5_1:4665962-4665981 | Msa0712860:intron | 25.0% |
| ! | ATAAGTTGTTTACACAAACA+GGG | - | chr5_1:4665963-4665982 | Msa0712860:intron | 25.0% |
| ! | GAAAGAATCCTATATGTTAA+GGG | - | chr5_1:4666106-4666125 | Msa0712860:CDS | 25.0% |
| !! | ACCTAACAAGTTAATTTTGT+GGG | - | chr5_1:4666280-4666299 | Msa0712860:intron | 25.0% |
| ! | TACACACTAATAATAGAAGT+AGG | - | chr5_1:4666365-4666384 | Msa0712860:CDS | 25.0% |
| ! | ACACACTAATAATAGAAGTA+GGG | - | chr5_1:4666366-4666385 | Msa0712860:CDS | 25.0% |
| !! | ACCTAACAAGTTAATTTTGT+GGG | - | chr5_1:4666280-4666299 | Msa0712860:intron | 25.0% |
| ! | CTAAGTAGATAGTTAAACAA+AGG | + | chr5_1:4666619-4666638 | None:intergenic | 25.0% |
| !! | AAAACTATTTGTGTTTTGCT+TGG | - | chr5_1:4666651-4666670 | Msa0712860:intron | 25.0% |
| !!! | AATATGATTTTAGTGTGATG+TGG | - | chr5_1:4666734-4666753 | Msa0712860:intron | 25.0% |
| ! | AATAAATATTAATGCTCCAC+AGG | + | chr5_1:4666784-4666803 | None:intergenic | 25.0% |
| ! | AGAAAGAAATATGTGAAGAT+GGG | + | chr5_1:4667061-4667080 | None:intergenic | 25.0% |
| ! | TAGAAAGAAATATGTGAAGA+TGG | + | chr5_1:4667062-4667081 | None:intergenic | 25.0% |
| ! | TGTTAACTGAAAATATTCAG+TGG | + | chr5_1:4667373-4667392 | None:intergenic | 25.0% |
| ! | CATAATAAAAGAAAGCTAGA+TGG | + | chr5_1:4667399-4667418 | None:intergenic | 25.0% |
| !!! | CATCTAGCTTTCTTTTATTA+TGG | - | chr5_1:4667397-4667416 | Msa0712860:intron | 25.0% |
| !! | TTATTATGGTCTAAGATAGT+AGG | - | chr5_1:4667411-4667430 | Msa0712860:intron | 25.0% |
| ! | GATGAATATAACACAAAGAA+TGG | - | chr5_1:4667564-4667583 | Msa0712860:intron | 25.0% |
| ! | TGAATATAACACAAAGAATG+GGG | - | chr5_1:4667566-4667585 | Msa0712860:intron | 25.0% |
| ! | TTACTAACTTCAATTTGTCT+TGG | - | chr5_1:4667642-4667661 | Msa0712860:intron | 25.0% |
| ! | CACTTATTTCCTTTAATTAC+CGG | + | chr5_1:4668065-4668084 | None:intergenic | 25.0% |
| ! | ACTTGAGTATATGTTACAAT+AGG | - | chr5_1:4668122-4668141 | Msa0712860:intron | 25.0% |
| ! | TTATTACAACAATACAACAG+AGG | + | chr5_1:4668163-4668182 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTCTTTAAGGTG+GGG | - | chr5_1:4668337-4668356 | Msa0712860:intron | 25.0% |
| !!! | TTAAATTACTTTTTTGAGGG+GGG | + | chr5_1:4668439-4668458 | None:intergenic | 25.0% |
| ! | TCAATTAAAACTGTAGATCT+AGG | - | chr5_1:4668540-4668559 | Msa0712860:intron | 25.0% |
| ! | CAATTAAAACTGTAGATCTA+GGG | - | chr5_1:4668541-4668560 | Msa0712860:intron | 25.0% |
| !!! | ATATTTAATTTGCTAGTTGC+TGG | - | chr5_1:4668917-4668936 | Msa0712860:intron | 25.0% |
| ! | ACAAATAACAATGATACACA+GGG | + | chr5_1:4669243-4669262 | None:intergenic | 25.0% |
| ! | AACAAATAACAATGATACAC+AGG | + | chr5_1:4669244-4669263 | None:intergenic | 25.0% |
| TTTGTAATACTGTTACGACT+AGG | + | chr5_1:4664731-4664750 | None:intergenic | 30.0% | |
| !!! | TTGAATTTTTTCAGATCTCG+TGG | - | chr5_1:4664785-4664804 | Msa0712860:three_prime_UTR | 30.0% |
| TCTGAAAAACTCAACAACAA+TGG | - | chr5_1:4664809-4664828 | Msa0712860:three_prime_UTR | 30.0% | |
| !!! | TTGATTCCGCCTTTTTTTTT+TGG | - | chr5_1:4665059-4665078 | Msa0712860:intron | 30.0% |
| TCATCAGCACCAAAAAAAAA+AGG | + | chr5_1:4665071-4665090 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTGGTGCTGATG+AGG | - | chr5_1:4665070-4665089 | Msa0712860:intron | 30.0% |
| ! | AAATGATGATGAAGAAGGTA+AGG | - | chr5_1:4665112-4665131 | Msa0712860:intron | 30.0% |
| ! | AATGATGATGAAGAAGGTAA+GGG | - | chr5_1:4665113-4665132 | Msa0712860:intron | 30.0% |
| ! | ATTTCTCTGTTTTGCATGTT+TGG | - | chr5_1:4665351-4665370 | Msa0712860:intron | 30.0% |
| TCAAATAAGTCAAACCATAG+CGG | + | chr5_1:4665442-4665461 | None:intergenic | 30.0% | |
| AGAACTTATGAAAACAGCTT+AGG | - | chr5_1:4665500-4665519 | Msa0712860:intron | 30.0% | |
| TTATCATGTGTGACATTGTT+TGG | - | chr5_1:4665646-4665665 | Msa0712860:intron | 30.0% | |
| AAGTTATCATGCTAAGCTTA+TGG | + | chr5_1:4665727-4665746 | None:intergenic | 30.0% | |
| GCTATATGCTTAAAAATAGC+AGG | - | chr5_1:4665832-4665851 | Msa0712860:exon | 30.0% | |
| GGAAAGAATCCTATATGTTA+AGG | - | chr5_1:4666105-4666124 | Msa0712860:CDS | 30.0% | |
| AATCCTATATGTTAAGGGTT+TGG | - | chr5_1:4666111-4666130 | Msa0712860:CDS | 30.0% | |
| ! | AAACCTTGTTTATGCATATC+AGG | + | chr5_1:4666242-4666261 | None:intergenic | 30.0% |
| ! | CACCTAACAAGTTAATTTTG+TGG | - | chr5_1:4666279-4666298 | Msa0712860:intron | 30.0% |
| !! | ACCCACAAAATTAACTTGTT+AGG | + | chr5_1:4666284-4666303 | None:intergenic | 30.0% |
| CACACTAATAATAGAAGTAG+GGG | - | chr5_1:4666367-4666386 | Msa0712860:CDS | 30.0% | |
| ACACTAATAATAGAAGTAGG+GGG | - | chr5_1:4666368-4666387 | Msa0712860:CDS | 30.0% | |
| ! | AACCTTATTTATGCCATATC+AGG | + | chr5_1:4666441-4666460 | None:intergenic | 30.0% |
| ! | CACCTAACAAGTTAATTTTG+TGG | - | chr5_1:4666279-4666298 | Msa0712860:intron | 30.0% |
| !! | ACCCACAAAATTAACTTGTT+AGG | + | chr5_1:4666284-4666303 | None:intergenic | 30.0% |
| ! | TTTTAATCACTTGTGGTTCT+TGG | - | chr5_1:4666582-4666601 | Msa0712860:intron | 30.0% |
| TCAAACATGGAATTCAAACA+GGG | + | chr5_1:4666715-4666734 | None:intergenic | 30.0% | |
| TTCAAACATGGAATTCAAAC+AGG | + | chr5_1:4666716-4666735 | None:intergenic | 30.0% | |
| TTCAGCTAAACTTTAGTGAT+TGG | + | chr5_1:4666837-4666856 | None:intergenic | 30.0% | |
| ACACTTTAACAGAGAAAGAT+AGG | + | chr5_1:4666982-4667001 | None:intergenic | 30.0% | |
| GAAAGAAATATGTGAAGATG+GGG | + | chr5_1:4667060-4667079 | None:intergenic | 30.0% | |
| !! | GACTTTACTTTTATTCCTGT+AGG | - | chr5_1:4667165-4667184 | Msa0712860:intron | 30.0% |
| TACTCAAAAGTTCTCACTAA+CGG | + | chr5_1:4667324-4667343 | None:intergenic | 30.0% | |
| CAAGTTCTACATTATGAAGT+TGG | - | chr5_1:4667507-4667526 | Msa0712860:intron | 30.0% | |
| GAATATAACACAAAGAATGG+GGG | - | chr5_1:4667567-4667586 | Msa0712860:intron | 30.0% | |
| TATAATGAGCTTTCTGATTG+TGG | - | chr5_1:4667786-4667805 | Msa0712860:intron | 30.0% | |
| ATAATGAGCTTTCTGATTGT+GGG | - | chr5_1:4667787-4667806 | Msa0712860:intron | 30.0% | |
| !! | CTGTTTTCTTGATAACTTTC+AGG | - | chr5_1:4668032-4668051 | Msa0712860:intron | 30.0% |
| !! | TTTTCTTGATAACTTTCAGG+TGG | - | chr5_1:4668035-4668054 | Msa0712860:intron | 30.0% |
| CGGTAATTAAAGGAAATAAG+TGG | - | chr5_1:4668063-4668082 | Msa0712860:intron | 30.0% | |
| !! | AAGTTTTGTATTCATTGACG+CGG | + | chr5_1:4668106-4668125 | None:intergenic | 30.0% |
| CAATCATTTAGCTAAGTATC+AGG | + | chr5_1:4668249-4668268 | None:intergenic | 30.0% | |
| TATCTGATATGTGATCCAAT+GGG | + | chr5_1:4668472-4668491 | None:intergenic | 30.0% | |
| ATATCTGATATGTGATCCAA+TGG | + | chr5_1:4668473-4668492 | None:intergenic | 30.0% | |
| ! | TGCACCTATTGTGTTTATTT+TGG | - | chr5_1:4668515-4668534 | Msa0712860:intron | 30.0% |
| GAAGCCAAAATAAACACAAT+AGG | + | chr5_1:4668522-4668541 | None:intergenic | 30.0% | |
| CTTATGACATGTGTATAAAG+CGG | - | chr5_1:4668630-4668649 | Msa0712860:intron | 30.0% | |
| !! | GATTATCAACTTCTGCTTTT+CGG | - | chr5_1:4668888-4668907 | Msa0712860:intron | 30.0% |
| !! | ATTATCAACTTCTGCTTTTC+GGG | - | chr5_1:4668889-4668908 | Msa0712860:intron | 30.0% |
| !! | TGTTGATTGACCTATTTTTC+AGG | - | chr5_1:4668961-4668980 | Msa0712860:CDS | 30.0% |
| ! | GGTATACTTGTTACATCTAT+TGG | + | chr5_1:4669196-4669215 | None:intergenic | 30.0% |
| ! | GATGAAGATGATTTTCGTGA+TGG | + | chr5_1:4664858-4664877 | None:intergenic | 35.0% |
| AAACGAGAAGAATGAGGATA+AGG | + | chr5_1:4664920-4664939 | None:intergenic | 35.0% | |
| ! | ATCCTCATTCTTCTCGTTTT+CGG | - | chr5_1:4664921-4664940 | Msa0712860:three_prime_UTR | 35.0% |
| !!! | GTTTTGATTGGAAGAAGGAA+TGG | + | chr5_1:4664955-4664974 | None:intergenic | 35.0% |
| TCAGCACCAAAAAAAAAAGG+CGG | + | chr5_1:4665068-4665087 | None:intergenic | 35.0% | |
| TTGTGATACACAAAAGCTCT+AGG | + | chr5_1:4665170-4665189 | None:intergenic | 35.0% | |
| GGCATATAGATAAGCACTTA+TGG | + | chr5_1:4665403-4665422 | None:intergenic | 35.0% | |
| AGCGGCCCTTAATATATAAA+TGG | + | chr5_1:4665424-4665443 | None:intergenic | 35.0% | |
| TTATATATTAAGGGCCGCTA+TGG | - | chr5_1:4665425-4665444 | Msa0712860:intron | 35.0% | |
| ACAAACCACAACCTTGATTA+AGG | + | chr5_1:4665989-4666008 | None:intergenic | 35.0% | |
| ! | CAATTTGTAGACTAGTCACA+CGG | + | chr5_1:4666085-4666104 | None:intergenic | 35.0% |
| !! | GTGTGACTAGTCTACAAATT+GGG | - | chr5_1:4666084-4666103 | Msa0712860:CDS | 35.0% |
| GTACCAAACCCTTAACATAT+AGG | + | chr5_1:4666117-4666136 | None:intergenic | 35.0% | |
| GTTTAGTGCATAGCAATGAA+AGG | - | chr5_1:4666200-4666219 | Msa0712860:CDS | 35.0% | |
| TAGCCTGATATGCATAAACA+AGG | - | chr5_1:4666236-4666255 | Msa0712860:intron | 35.0% | |
| ! | TAATTTTGTGGGGTTGAGTT+AGG | - | chr5_1:4666327-4666346 | Msa0712860:intron | 35.0% |
| AGCCTGATATGGCATAAATA+AGG | - | chr5_1:4666436-4666455 | Msa0712860:CDS | 35.0% | |
| ! | AAGGGTCTTTTAATCACTTG+TGG | - | chr5_1:4666575-4666594 | Msa0712860:intron | 35.0% |
| CTTGGTTAAATGATGCTTGA+TGG | - | chr5_1:4666669-4666688 | Msa0712860:intron | 35.0% | |
| GTTAAATGATGCTTGATGGA+AGG | - | chr5_1:4666673-4666692 | Msa0712860:intron | 35.0% | |
| AAACTTTAGTGATTGGAAGG+TGG | + | chr5_1:4666830-4666849 | None:intergenic | 35.0% | |
| GCTAAACTTTAGTGATTGGA+AGG | + | chr5_1:4666833-4666852 | None:intergenic | 35.0% | |
| TGAATAATCTGAGTAGACCA+AGG | - | chr5_1:4666853-4666872 | Msa0712860:CDS | 35.0% | |
| !! | GTGTCCTCTGAAATTGAAAA+TGG | - | chr5_1:4666998-4667017 | Msa0712860:intron | 35.0% |
| ! | GCAACCATTTTCAATTTCAG+AGG | + | chr5_1:4667005-4667024 | None:intergenic | 35.0% |
| !! | AGTGAGAACTTTTGAGTAGT+TGG | - | chr5_1:4667326-4667345 | Msa0712860:intron | 35.0% |
| ! | ATGCTTGCTGAAGTATATGA+TGG | + | chr5_1:4667443-4667462 | None:intergenic | 35.0% |
| TCAAGAAAGTAGTCATAGTG+AGG | + | chr5_1:4667546-4667565 | None:intergenic | 35.0% | |
| TACAGTACAGATGTTGAAGA+AGG | - | chr5_1:4667711-4667730 | Msa0712860:intron | 35.0% | |
| ACAGTACAGATGTTGAAGAA+GGG | - | chr5_1:4667712-4667731 | Msa0712860:intron | 35.0% | |
| TCAGAAAGCTCATTATACCA+CGG | + | chr5_1:4667783-4667802 | None:intergenic | 35.0% | |
| CTTTCTGATTGTGGGAAAAA+AGG | - | chr5_1:4667795-4667814 | Msa0712860:intron | 35.0% | |
| CTTTCAATTAAGCCAAAGAG+AGG | - | chr5_1:4667819-4667838 | Msa0712860:intron | 35.0% | |
| ATAAGTGGTCAAGTACCAAA+TGG | - | chr5_1:4668078-4668097 | Msa0712860:intron | 35.0% | |
| !! | TCATCACAATAGCTTGCTAT+TGG | + | chr5_1:4668411-4668430 | None:intergenic | 35.0% |
| TTTAATATCGTGTGACCCAT+TGG | - | chr5_1:4668454-4668473 | Msa0712860:intron | 35.0% | |
| !! | GGGAAGTGCTTATCATATAA+GGG | + | chr5_1:4668761-4668780 | None:intergenic | 35.0% |
| !! | TGGGAAGTGCTTATCATATA+AGG | + | chr5_1:4668762-4668781 | None:intergenic | 35.0% |
| TTCCCAAAATGTGTTTGTGT+GGG | - | chr5_1:4668776-4668795 | Msa0712860:CDS | 35.0% | |
| ! | TACCCACACAAACACATTTT+GGG | + | chr5_1:4668781-4668800 | None:intergenic | 35.0% |
| AATAGGTCAATCAACATGAG+AGG | + | chr5_1:4668957-4668976 | None:intergenic | 35.0% | |
| TCAGCTAATACTTCGTACAA+TGG | - | chr5_1:4669021-4669040 | Msa0712860:CDS | 35.0% | |
| TACTGTTACGACTAGGTAGA+GGG | + | chr5_1:4664724-4664743 | None:intergenic | 40.0% | |
| ATACTGTTACGACTAGGTAG+AGG | + | chr5_1:4664725-4664744 | None:intergenic | 40.0% | |
| TTCCGAAAACGAGAAGAATG+AGG | + | chr5_1:4664926-4664945 | None:intergenic | 40.0% | |
| !!! | GGCAAGTTTTGATTGGAAGA+AGG | + | chr5_1:4664960-4664979 | None:intergenic | 40.0% |
| !! | GGGTTTAGGCAAGTTTTGAT+TGG | + | chr5_1:4664967-4664986 | None:intergenic | 40.0% |
| ACAATGGAGGTAAGATCGTT+GGG | + | chr5_1:4664987-4665006 | None:intergenic | 40.0% | |
| AACAATGGAGGTAAGATCGT+TGG | + | chr5_1:4664988-4665007 | None:intergenic | 40.0% | |
| !! | ATCGACGGTGTTATGAACAA+TGG | + | chr5_1:4665003-4665022 | None:intergenic | 40.0% |
| TTGTTCATAACACCGTCGAT+AGG | - | chr5_1:4665003-4665022 | Msa0712860:intron | 40.0% | |
| ACAGAAACGTTACCTATCGA+CGG | + | chr5_1:4665018-4665037 | None:intergenic | 40.0% | |
| GGCGGAATCAAATCGAAAAA+CGG | + | chr5_1:4665050-4665069 | None:intergenic | 40.0% | |
| !! | AGTGGGTTGAAGTTGTATCA+TGG | - | chr5_1:4665141-4665160 | Msa0712860:intron | 40.0% |
| ! | GTGGGTTGAAGTTGTATCAT+GGG | - | chr5_1:4665142-4665161 | Msa0712860:intron | 40.0% |
| AAAGGGAACACGTCCTAATT+TGG | - | chr5_1:4666046-4666065 | Msa0712860:intron | 40.0% | |
| !! | CGTGTGACTAGTCTACAAAT+TGG | - | chr5_1:4666083-4666102 | Msa0712860:CDS | 40.0% |
| CTTTCTTTGGTATGTAGCCA+TGG | + | chr5_1:4666401-4666420 | None:intergenic | 40.0% | |
| CATGGCTACATACCAAAGAA+AGG | - | chr5_1:4666399-4666418 | Msa0712860:CDS | 40.0% | |
| ! | GTTGGACTTTAGCCTTTCTT+TGG | + | chr5_1:4666414-4666433 | None:intergenic | 40.0% |
| ATGCTTGATGGAAGGTTCAA+GGG | - | chr5_1:4666681-4666700 | Msa0712860:intron | 40.0% | |
| !! | TGTTTAACTTGAAGCTCCTG+TGG | - | chr5_1:4666765-4666784 | Msa0712860:intron | 40.0% |
| ATAATCTGAGTAGACCAAGG+AGG | - | chr5_1:4666856-4666875 | Msa0712860:CDS | 40.0% | |
| CAGATATTCACATTCCTCCT+TGG | + | chr5_1:4666873-4666892 | None:intergenic | 40.0% | |
| !! | ACTGTTGACTTGTGCATACT+CGG | + | chr5_1:4666911-4666930 | None:intergenic | 40.0% |
| CATTGTTTCGATTGCCAGTA+TGG | - | chr5_1:4667030-4667049 | Msa0712860:CDS | 40.0% | |
| !!! | TACGAGCTCTGGAACATTTT+TGG | - | chr5_1:4667095-4667114 | Msa0712860:intron | 40.0% |
| CATCACATGCTATCACTTAC+AGG | + | chr5_1:4667620-4667639 | None:intergenic | 40.0% | |
| CAGTACAGATGTTGAAGAAG+GGG | - | chr5_1:4667713-4667732 | Msa0712860:intron | 40.0% | |
| AGTACAGATGTTGAAGAAGG+GGG | - | chr5_1:4667714-4667733 | Msa0712860:intron | 40.0% | |
| ! | AGTAAAGCATCACCTCTCTT+TGG | + | chr5_1:4667834-4667853 | None:intergenic | 40.0% |
| !! | GAGGTGATGCTTTACTTTTC+TGG | - | chr5_1:4667838-4667857 | Msa0712860:intron | 40.0% |
| ! | GATGCATCTAAAGTTGCATC+CGG | + | chr5_1:4667873-4667892 | None:intergenic | 40.0% |
| TTAGATGCATCAAGCTTGCA+TGG | - | chr5_1:4667882-4667901 | Msa0712860:intron | 40.0% | |
| ! | ATAACTTTCAGGTGGTTGTC+CGG | - | chr5_1:4668043-4668062 | Msa0712860:intron | 40.0% |
| TATGCGTTGCACTATTGCAT+AGG | + | chr5_1:4668371-4668390 | None:intergenic | 40.0% | |
| !!! | CAAGGGTGAGTTGTTTTAGT+TGG | + | chr5_1:4668681-4668700 | None:intergenic | 40.0% |
| CTTCCCAAAATGTGTTTGTG+TGG | - | chr5_1:4668775-4668794 | Msa0712860:CDS | 40.0% | |
| ! | GTACCCACACAAACACATTT+TGG | + | chr5_1:4668782-4668801 | None:intergenic | 40.0% |
| CTCAGACAAGCCTGAAAAAT+AGG | + | chr5_1:4668974-4668993 | None:intergenic | 40.0% | |
| ACTTCGTACAATGGAGCTTA+AGG | - | chr5_1:4669030-4669049 | Msa0712860:CDS | 40.0% | |
| AATGGAGCTTAAGGTCTCAA+AGG | - | chr5_1:4669039-4669058 | Msa0712860:CDS | 40.0% | |
| ATACACAGGGCAAATGAGAT+CGG | + | chr5_1:4669230-4669249 | None:intergenic | 40.0% | |
| TCTGTTGTTGCCCATTTATG+TGG | - | chr5_1:4669268-4669287 | Msa0712860:five_prime_UTR | 40.0% | |
| CTGTTGTTGCCCATTTATGT+GGG | - | chr5_1:4669269-4669288 | Msa0712860:five_prime_UTR | 40.0% | |
| TGTTGTTGCCCATTTATGTG+GGG | - | chr5_1:4669270-4669289 | Msa0712860:five_prime_UTR | 40.0% | |
| GTAGAGGGTGGAAGAAAGAA+TGG | + | chr5_1:4664709-4664728 | None:intergenic | 45.0% | |
| GATTGGAAGAAGGAATGGAG+AGG | + | chr5_1:4664950-4664969 | None:intergenic | 45.0% | |
| GAGGTAAGATCGTTGGGTTT+AGG | + | chr5_1:4664981-4665000 | None:intergenic | 45.0% | |
| !! | GACGGTGTTATGAACAATGG+AGG | + | chr5_1:4665000-4665019 | None:intergenic | 45.0% |
| AAGAAGGTAAGGGTGAACAG+TGG | - | chr5_1:4665123-4665142 | Msa0712860:intron | 45.0% | |
| AGAAGGTAAGGGTGAACAGT+GGG | - | chr5_1:4665124-4665143 | Msa0712860:intron | 45.0% | |
| CACAAACAGGGCCTTAATCA+AGG | - | chr5_1:4665975-4665994 | Msa0712860:intron | 45.0% | |
| AAGTAGGGGGTTTAGTACCA+TGG | - | chr5_1:4666381-4666400 | Msa0712860:CDS | 45.0% | |
| AAGTCCAACGTAGCCTGATA+TGG | - | chr5_1:4666425-4666444 | Msa0712860:CDS | 45.0% | |
| TATGCCATATCAGGCTACGT+TGG | + | chr5_1:4666432-4666451 | None:intergenic | 45.0% | |
| GATGCTTGATGGAAGGTTCA+AGG | - | chr5_1:4666680-4666699 | Msa0712860:intron | 45.0% | |
| !! | ACAGTTGTTGATAGCGAGAC+TGG | - | chr5_1:4666926-4666945 | Msa0712860:intron | 45.0% |
| AAAGAGCAAAGACAGCAGGT+AGG | - | chr5_1:4666949-4666968 | Msa0712860:intron | 45.0% | |
| !!! | CTCTGGAACATTTTTGGCCA+GGG | - | chr5_1:4667101-4667120 | Msa0712860:intron | 45.0% |
| !!! | TCTGGAACATTTTTGGCCAG+GGG | - | chr5_1:4667102-4667121 | Msa0712860:intron | 45.0% |
| GCCTCACAATATACAGAGCA+CGG | - | chr5_1:4667474-4667493 | Msa0712860:intron | 45.0% | |
| ACCGTGCTCTGTATATTGTG+AGG | + | chr5_1:4667478-4667497 | None:intergenic | 45.0% | |
| CAATATACAGAGCACGGTGA+AGG | - | chr5_1:4667480-4667499 | Msa0712860:intron | 45.0% | |
| TGAAATTCCCCTTAGCAGCA+GGG | + | chr5_1:4667752-4667771 | None:intergenic | 45.0% | |
| GGAATTTCAGTAATGTGCCG+TGG | - | chr5_1:4667763-4667782 | Msa0712860:intron | 45.0% | |
| !!! | ACTTTTCTGGAGCATGAAGC+CGG | - | chr5_1:4667851-4667870 | Msa0712860:intron | 45.0% |
| GGTGGTTGTCCGGTAATTAA+AGG | - | chr5_1:4668053-4668072 | Msa0712860:intron | 45.0% | |
| TTCATTGACGCGGATCCATT+TGG | + | chr5_1:4668096-4668115 | None:intergenic | 45.0% | |
| !!! | TTACTTTTTTGAGGGGGGAG+AGG | + | chr5_1:4668434-4668453 | None:intergenic | 45.0% |
| GCTGAGACTTTGCACATGAT+TGG | + | chr5_1:4669006-4669025 | None:intergenic | 45.0% | |
| ATGAGATCGGAGCAAAAAGC+TGG | + | chr5_1:4669217-4669236 | None:intergenic | 45.0% | |
| AGAGAAGGCCCCACATAAAT+GGG | + | chr5_1:4669281-4669300 | None:intergenic | 45.0% | |
| TAGAGAAGGCCCCACATAAA+TGG | + | chr5_1:4669282-4669301 | None:intergenic | 45.0% | |
| !! | AAAAAAAAAGTAAATATAAT+AGG | + | chr5_1:4667203-4667222 | None:intergenic | 5.0% |
| TGTTACGACTAGGTAGAGGG+TGG | + | chr5_1:4664721-4664740 | None:intergenic | 50.0% | |
| CAGGGCCTTAATCAAGGTTG+TGG | - | chr5_1:4665981-4666000 | Msa0712860:intron | 50.0% | |
| AACTAGCAGCCTCGAACTCT+AGG | - | chr5_1:4666137-4666156 | Msa0712860:CDS | 50.0% | |
| TTGTTCCCTCCTAGAGTTCG+AGG | + | chr5_1:4666149-4666168 | None:intergenic | 50.0% | |
| CTGGAAAGAGCAAAGACAGC+AGG | - | chr5_1:4666945-4666964 | Msa0712860:intron | 50.0% | |
| GAAGATGGGGTTTGCCATAC+TGG | + | chr5_1:4667047-4667066 | None:intergenic | 50.0% | |
| !!! | GCTCTGGAACATTTTTGGCC+AGG | - | chr5_1:4667100-4667119 | Msa0712860:intron | 50.0% |
| CACAATCTTATCACGTCCCC+TGG | + | chr5_1:4667121-4667140 | None:intergenic | 50.0% | |
| GGGGACGTGATAAGATTGTG+AGG | - | chr5_1:4667121-4667140 | Msa0712860:intron | 50.0% | |
| ACAGTGTTCCCTGCTGCTAA+GGG | - | chr5_1:4667741-4667760 | Msa0712860:intron | 50.0% | |
| CTGAAATTCCCCTTAGCAGC+AGG | + | chr5_1:4667753-4667772 | None:intergenic | 50.0% | |
| ! | TCAACGGGCTTTCACAGTAG+AGG | - | chr5_1:4667993-4668012 | Msa0712860:intron | 50.0% |
| CGTTGCACTATTGCATAGGC+TGG | + | chr5_1:4668367-4668386 | None:intergenic | 50.0% | |
| GAAACGTTTGCAGCGTGATG+CGG | - | chr5_1:4669061-4669080 | Msa0712860:CDS | 50.0% | |
| AAACGTTTGCAGCGTGATGC+GGG | - | chr5_1:4669062-4669081 | Msa0712860:CDS | 50.0% | |
| TAGCAGCCTCGAACTCTAGG+AGG | - | chr5_1:4666140-4666159 | Msa0712860:CDS | 55.0% | |
| ! | AGCAGCCTCGAACTCTAGGA+GGG | - | chr5_1:4666141-4666160 | Msa0712860:CDS | 55.0% |
| TGTAGAGTGCGTACGAGCTC+TGG | - | chr5_1:4667084-4667103 | Msa0712860:intron | 55.0% | |
| AGGTGGGGTTACTTGCCTAC+AGG | + | chr5_1:4667183-4667202 | None:intergenic | 55.0% | |
| GACAGTGTTCCCTGCTGCTA+AGG | - | chr5_1:4667740-4667759 | Msa0712860:intron | 55.0% | |
| CAGTGTTCCCTGCTGCTAAG+GGG | - | chr5_1:4667742-4667761 | Msa0712860:intron | 55.0% | |
| TGTGCTGCCTTCTGCGTCAA+CGG | - | chr5_1:4667977-4667996 | Msa0712860:intron | 55.0% | |
| TGAAAGCCCGTTGACGCAGA+AGG | + | chr5_1:4667987-4668006 | None:intergenic | 55.0% | |
| AACGTTTGCAGCGTGATGCG+GGG | - | chr5_1:4669063-4669082 | Msa0712860:CDS | 55.0% | |
| GTGCTGCCTTCTGCGTCAAC+GGG | - | chr5_1:4667978-4667997 | Msa0712860:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 4664663 | 4669303 | 4664663 | ID=Msa0712860;Name=Msa0712860 |
| chr5_1 | mRNA | 4664663 | 4669303 | 4664663 | ID=Msa0712860-mRNA-1;Parent=Msa0712860;Name=Msa0712860-mRNA-1;_AED=0.13;_eAED=0.13;_QI=165|0.75|0.77|0.88|0.5|0.55|9|337|295 |
| chr5_1 | exon | 4664663 | 4664983 | 4664663 | ID=Msa0712860-mRNA-1:exon:1966;Parent=Msa0712860-mRNA-1 |
| chr5_1 | exon | 4665823 | 4665912 | 4665823 | ID=Msa0712860-mRNA-1:exon:1965;Parent=Msa0712860-mRNA-1 |
| chr5_1 | exon | 4666063 | 4666250 | 4666063 | ID=Msa0712860-mRNA-1:exon:1964;Parent=Msa0712860-mRNA-1 |
| chr5_1 | exon | 4666347 | 4666476 | 4666347 | ID=Msa0712860-mRNA-1:exon:1963;Parent=Msa0712860-mRNA-1 |
| chr5_1 | exon | 4666644 | 4666657 | 4666644 | ID=Msa0712860-mRNA-1:exon:1962;Parent=Msa0712860-mRNA-1 |
| chr5_1 | exon | 4666776 | 4666877 | 4666776 | ID=Msa0712860-mRNA-1:exon:1961;Parent=Msa0712860-mRNA-1 |
| chr5_1 | exon | 4667000 | 4667097 | 4667000 | ID=Msa0712860-mRNA-1:exon:1960;Parent=Msa0712860-mRNA-1 |
| chr5_1 | exon | 4668770 | 4668854 | 4668770 | ID=Msa0712860-mRNA-1:exon:1959;Parent=Msa0712860-mRNA-1 |
| chr5_1 | exon | 4668942 | 4669303 | 4668942 | ID=Msa0712860-mRNA-1:exon:1958;Parent=Msa0712860-mRNA-1 |
| chr5_1 | five_prime_UTR | 4669139 | 4669303 | 4669139 | ID=Msa0712860-mRNA-1:five_prime_utr;Parent=Msa0712860-mRNA-1 |
| chr5_1 | CDS | 4668942 | 4669138 | 4668942 | ID=Msa0712860-mRNA-1:cds;Parent=Msa0712860-mRNA-1 |
| chr5_1 | CDS | 4668770 | 4668854 | 4668770 | ID=Msa0712860-mRNA-1:cds;Parent=Msa0712860-mRNA-1 |
| chr5_1 | CDS | 4667000 | 4667097 | 4667000 | ID=Msa0712860-mRNA-1:cds;Parent=Msa0712860-mRNA-1 |
| chr5_1 | CDS | 4666776 | 4666877 | 4666776 | ID=Msa0712860-mRNA-1:cds;Parent=Msa0712860-mRNA-1 |
| chr5_1 | CDS | 4666644 | 4666657 | 4666644 | ID=Msa0712860-mRNA-1:cds;Parent=Msa0712860-mRNA-1 |
| chr5_1 | CDS | 4666347 | 4666476 | 4666347 | ID=Msa0712860-mRNA-1:cds;Parent=Msa0712860-mRNA-1 |
| chr5_1 | CDS | 4666063 | 4666250 | 4666063 | ID=Msa0712860-mRNA-1:cds;Parent=Msa0712860-mRNA-1 |
| chr5_1 | CDS | 4665839 | 4665912 | 4665839 | ID=Msa0712860-mRNA-1:cds;Parent=Msa0712860-mRNA-1 |
| chr5_1 | three_prime_UTR | 4665823 | 4665838 | 4665823 | ID=Msa0712860-mRNA-1:three_prime_utr;Parent=Msa0712860-mRNA-1 |
| chr5_1 | three_prime_UTR | 4664663 | 4664983 | 4664663 | ID=Msa0712860-mRNA-1:three_prime_utr;Parent=Msa0712860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
