Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800480 | XP_003612249.1 | 96.949 | 295 | 3 | 1 | 1 | 295 | 1 | 289 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800480 | sp|F4JZ24|P4H10_ARATH | 74.490 | 294 | 68 | 2 | 1 | 294 | 2 | 288 | 4.85e-165 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800480 | G7JYR0 | 96.949 | 295 | 3 | 1 | 1 | 295 | 1 | 289 | 0.0 | 589 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026780 | Msa0800480 | 0.818343 | 2.059195e-52 | -8.615850e-47 |
| Msa0063940 | Msa0800480 | 0.832856 | 7.443904e-56 | -8.615850e-47 |
| Msa0067590 | Msa0800480 | -0.802695 | 4.966270e-49 | -8.615850e-47 |
| Msa0098240 | Msa0800480 | 0.803551 | 3.302669e-49 | -8.615850e-47 |
| Msa0610690 | Msa0800480 | 0.831738 | 1.408162e-55 | -8.615850e-47 |
| Msa0632420 | Msa0800480 | 0.808517 | 2.978782e-50 | -8.615850e-47 |
| Msa0646020 | Msa0800480 | 0.800433 | 1.444258e-48 | -8.615850e-47 |
| Msa0646420 | Msa0800480 | 0.804625 | 1.975105e-49 | -8.615850e-47 |
| Msa0651870 | Msa0800480 | 0.801978 | 6.976021e-49 | -8.615850e-47 |
| Msa0661830 | Msa0800480 | 0.803613 | 3.206749e-49 | -8.615850e-47 |
| Msa0662220 | Msa0800480 | 0.806053 | 9.913067e-50 | -8.615850e-47 |
| Msa0667030 | Msa0800480 | 0.827449 | 1.554854e-54 | -8.615850e-47 |
| Msa0712860 | Msa0800480 | 0.994307 | 3.386269e-206 | -8.615850e-47 |
| Msa0742370 | Msa0800480 | -0.824767 | 6.753659e-54 | -8.615850e-47 |
| Msa0759230 | Msa0800480 | 0.802924 | 4.453465e-49 | -8.615850e-47 |
| Msa0779450 | Msa0800480 | -0.834470 | 2.943002e-56 | -8.615850e-47 |
| Msa0795750 | Msa0800480 | 0.823556 | 1.299556e-53 | -8.615850e-47 |
| Msa0800480 | Msa0805390 | 0.801966 | 7.017720e-49 | -8.615850e-47 |
| Msa0800480 | Msa0823480 | -0.810275 | 1.249641e-50 | -8.615850e-47 |
| Msa0800480 | Msa0831740 | 0.818201 | 2.217761e-52 | -8.615850e-47 |
| Msa0800480 | Msa0838480 | 0.825355 | 4.904715e-54 | -8.615850e-47 |
| Msa0800480 | Msa0842140 | 0.806280 | 8.879669e-50 | -8.615850e-47 |
| Msa0800480 | Msa0862480 | -0.827277 | 1.709999e-54 | -8.615850e-47 |
| Msa0800480 | Msa0940910 | 0.834171 | 3.496864e-56 | -8.615850e-47 |
| Msa0800480 | Msa0964020 | 0.846132 | 2.631407e-59 | -8.615850e-47 |
| Msa0800480 | Msa1021520 | 0.803090 | 4.114623e-49 | -8.615850e-47 |
| Msa0800480 | Msa1032470 | 0.836423 | 9.439662e-57 | -8.615850e-47 |
| Msa0800480 | Msa1032480 | 0.821519 | 3.867474e-53 | -8.615850e-47 |
| Msa0800480 | Msa1122310 | -0.809291 | 2.035168e-50 | -8.615850e-47 |
| Msa0800480 | Msa1123780 | 0.809309 | 2.016271e-50 | -8.615850e-47 |
| Msa0800480 | Msa1169920 | 0.811144 | 8.106981e-51 | -8.615850e-47 |
| Msa0800480 | Msa1184230 | 0.806342 | 8.617723e-50 | -8.615850e-47 |
| Msa0800480 | Msa1197720 | 0.804107 | 2.531905e-49 | -8.615850e-47 |
| Msa0800480 | Msa1207920 | -0.824628 | 7.280930e-54 | -8.615850e-47 |
| Msa0800480 | Msa1212830 | 0.806496 | 7.998238e-50 | -8.615850e-47 |
| Msa0800480 | Msa1213040 | 0.830350 | 3.086044e-55 | -8.615850e-47 |
| Msa0800480 | Msa1251410 | 0.814244 | 1.700517e-51 | -8.615850e-47 |
| Msa0800480 | Msa1258630 | 0.839248 | 1.775132e-57 | -8.615850e-47 |
| Msa0800480 | Msa1260220 | 0.846167 | 2.573883e-59 | -8.615850e-47 |
| Msa0800480 | Msa1277260 | 0.824971 | 6.045128e-54 | -8.615850e-47 |
| Msa0800480 | Msa1315890 | 0.821939 | 3.091848e-53 | -8.615850e-47 |
| Msa0800480 | Msa1323070 | 0.823423 | 1.396393e-53 | -8.615850e-47 |
| Msa0800480 | Msa1329750 | 0.820880 | 5.428849e-53 | -8.615850e-47 |
| Msa0800480 | Msa1331570 | -0.801932 | 7.131539e-49 | -8.615850e-47 |
| Msa0800480 | Msa1341060 | 0.806409 | 8.342985e-50 | -8.615850e-47 |
| Msa0800480 | Msa1342960 | -0.807398 | 5.155451e-50 | -8.615850e-47 |
| Msa0800480 | Msa1364350 | -0.819731 | 9.954510e-53 | -8.615850e-47 |
| Msa0800480 | Msa1376660 | 0.825464 | 4.620352e-54 | -8.615850e-47 |
| Msa0800480 | Msa1384700 | 0.812343 | 4.446025e-51 | -8.615850e-47 |
| Msa0800480 | Msa1385730 | 0.808049 | 3.749047e-50 | -8.615850e-47 |
| Msa0800480 | Msa1392980 | 0.813934 | 1.990450e-51 | -8.615850e-47 |
| Msa0800480 | Msa1400970 | 0.826364 | 2.825607e-54 | -8.615850e-47 |
| Msa0800480 | Msa1418070 | 0.801365 | 9.320466e-49 | -8.615850e-47 |
| Msa0800480 | Msa1439250 | 0.824142 | 9.476104e-54 | -8.615850e-47 |
| Msa0800480 | Msa1442980 | 0.822696 | 2.063018e-53 | -8.615850e-47 |
| Msa0122530 | Msa0800480 | 0.814503 | 1.490148e-51 | -8.615850e-47 |
| Msa0140770 | Msa0800480 | -0.802666 | 5.035092e-49 | -8.615850e-47 |
| Msa0148960 | Msa0800480 | 0.820330 | 7.262947e-53 | -8.615850e-47 |
| Msa0167710 | Msa0800480 | 0.808898 | 2.469316e-50 | -8.615850e-47 |
| Msa0202490 | Msa0800480 | 0.816968 | 4.205906e-52 | -8.615850e-47 |
| Msa0228490 | Msa0800480 | 0.840021 | 1.117145e-57 | -8.615850e-47 |
| Msa0402070 | Msa0800480 | -0.804107 | 2.532212e-49 | -8.615850e-47 |
| Msa0479760 | Msa0800480 | -0.803518 | 3.354711e-49 | -8.615850e-47 |
| Msa0256140 | Msa0800480 | 0.830957 | 2.191515e-55 | -8.615850e-47 |
| Msa0256920 | Msa0800480 | 0.805836 | 1.101366e-49 | -8.615850e-47 |
| Msa0284180 | Msa0800480 | 0.808798 | 2.594454e-50 | -8.615850e-47 |
| Msa0293720 | Msa0800480 | 0.809052 | 2.289332e-50 | -8.615850e-47 |
| Msa0319920 | Msa0800480 | 0.805953 | 1.040688e-49 | -8.615850e-47 |
| Msa0343500 | Msa0800480 | 0.818014 | 2.445416e-52 | -8.615850e-47 |
| Msa0355080 | Msa0800480 | -0.836117 | 1.129361e-56 | -8.615850e-47 |
| Msa0532230 | Msa0800480 | 0.828585 | 8.283374e-55 | -8.615850e-47 |
| Msa0549950 | Msa0800480 | 0.808454 | 3.072839e-50 | -8.615850e-47 |
| Msa0566940 | Msa0800480 | -0.840863 | 6.731024e-58 | -8.615850e-47 |
| Msa0577690 | Msa0800480 | 0.816270 | 6.028598e-52 | -8.615850e-47 |
| Msa0578410 | Msa0800480 | 0.808291 | 3.329722e-50 | -8.615850e-47 |
| Msa0578460 | Msa0800480 | 0.803520 | 3.352694e-49 | -8.615850e-47 |
| Msa0579080 | Msa0800480 | 0.820260 | 7.533405e-53 | -8.615850e-47 |
| Msa0579160 | Msa0800480 | 0.846355 | 2.288056e-59 | -8.615850e-47 |
| Msa0579220 | Msa0800480 | 0.850917 | 1.245321e-60 | -8.615850e-47 |
| Msa0590620 | Msa0800480 | -0.804303 | 2.304635e-49 | -8.615850e-47 |
| Msa0592330 | Msa0800480 | 0.809092 | 2.244732e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800480 | MtrunA17_Chr5g0406051 | 96.949 | 295 | 3 | 1 | 1 | 295 | 1 | 289 | 0.0 | 589 |
| Msa0800480 | MtrunA17_Chr3g0143381 | 64.068 | 295 | 91 | 3 | 1 | 295 | 1 | 280 | 8.18e-141 | 398 |
| Msa0800480 | MtrunA17_Chr8g0371221 | 67.677 | 297 | 75 | 5 | 1 | 295 | 1 | 278 | 1.44e-140 | 397 |
| Msa0800480 | MtrunA17_Chr8g0371251 | 62.925 | 294 | 93 | 3 | 1 | 294 | 1 | 278 | 1.37e-134 | 382 |
| Msa0800480 | MtrunA17_Chr8g0371281 | 62.799 | 293 | 91 | 3 | 1 | 293 | 1 | 275 | 5.02e-132 | 375 |
| Msa0800480 | MtrunA17_Chr8g0371231 | 69.417 | 206 | 57 | 1 | 88 | 293 | 2 | 201 | 1.23e-104 | 303 |
| Msa0800480 | MtrunA17_Chr8g0371241 | 69.061 | 181 | 33 | 3 | 110 | 290 | 1 | 158 | 1.15e-83 | 249 |
| Msa0800480 | MtrunA17_Chr6g0452281 | 55.300 | 217 | 90 | 2 | 78 | 294 | 51 | 260 | 6.45e-83 | 252 |
| Msa0800480 | MtrunA17_Chr2g0286811 | 54.955 | 222 | 86 | 3 | 78 | 293 | 40 | 253 | 6.68e-81 | 246 |
| Msa0800480 | MtrunA17_Chr3g0143361 | 64.324 | 185 | 54 | 2 | 110 | 294 | 1 | 173 | 3.70e-79 | 238 |
| Msa0800480 | MtrunA17_Chr4g0066531 | 51.802 | 222 | 91 | 3 | 78 | 293 | 37 | 248 | 2.54e-76 | 234 |
| Msa0800480 | MtrunA17_Chr1g0213811 | 49.785 | 233 | 95 | 5 | 65 | 289 | 58 | 276 | 6.44e-68 | 213 |
| Msa0800480 | MtrunA17_Chr3g0143371 | 61.963 | 163 | 51 | 2 | 110 | 272 | 1 | 152 | 1.26e-64 | 200 |
| Msa0800480 | MtrunA17_Chr3g0143351 | 56.216 | 185 | 68 | 3 | 110 | 294 | 1 | 172 | 4.29e-63 | 197 |
| Msa0800480 | MtrunA17_Chr4g0053801 | 47.222 | 216 | 97 | 8 | 79 | 289 | 86 | 289 | 2.70e-59 | 191 |
| Msa0800480 | MtrunA17_Chr5g0401481 | 41.150 | 226 | 112 | 6 | 79 | 289 | 84 | 303 | 1.10e-49 | 167 |
| Msa0800480 | MtrunA17_Chr6g0470551 | 28.839 | 267 | 156 | 9 | 28 | 290 | 4 | 240 | 3.37e-30 | 115 |
| Msa0800480 | MtrunA17_Chr3g0098671 | 61.429 | 70 | 25 | 2 | 164 | 232 | 29 | 97 | 2.68e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800480 | AT5G66060.1 | 74.490 | 294 | 68 | 2 | 1 | 294 | 2 | 288 | 4.93e-166 | 462 |
| Msa0800480 | AT1G20270.1 | 69.388 | 294 | 82 | 3 | 1 | 294 | 1 | 286 | 6.79e-154 | 432 |
| Msa0800480 | AT2G17720.1 | 69.655 | 290 | 82 | 1 | 5 | 294 | 7 | 290 | 2.99e-141 | 400 |
| Msa0800480 | AT4G35810.1 | 70.656 | 259 | 67 | 2 | 38 | 293 | 37 | 289 | 9.71e-136 | 386 |
| Msa0800480 | AT4G35810.2 | 70.656 | 259 | 67 | 2 | 38 | 293 | 37 | 289 | 9.71e-136 | 386 |
| Msa0800480 | AT5G66060.2 | 70.000 | 250 | 66 | 3 | 1 | 250 | 2 | 242 | 6.98e-126 | 359 |
| Msa0800480 | AT1G20270.2 | 64.115 | 209 | 67 | 3 | 1 | 209 | 1 | 201 | 1.01e-93 | 276 |
| Msa0800480 | AT1G20270.3 | 64.115 | 209 | 67 | 3 | 1 | 209 | 1 | 201 | 1.01e-93 | 276 |
| Msa0800480 | AT3G28480.1 | 45.387 | 271 | 138 | 4 | 24 | 294 | 5 | 265 | 2.83e-80 | 246 |
| Msa0800480 | AT5G18900.1 | 53.670 | 218 | 93 | 2 | 78 | 293 | 37 | 248 | 9.69e-79 | 241 |
| Msa0800480 | AT3G06300.1 | 53.881 | 219 | 91 | 3 | 78 | 293 | 38 | 249 | 2.65e-77 | 238 |
| Msa0800480 | AT3G28490.1 | 52.804 | 214 | 93 | 3 | 81 | 293 | 35 | 241 | 5.27e-75 | 231 |
| Msa0800480 | AT4G35820.1 | 55.340 | 206 | 56 | 4 | 75 | 272 | 85 | 262 | 4.82e-70 | 218 |
| Msa0800480 | AT3G28480.2 | 42.652 | 279 | 142 | 6 | 24 | 294 | 5 | 273 | 1.20e-69 | 219 |
| Msa0800480 | AT2G43080.1 | 52.995 | 217 | 80 | 5 | 79 | 289 | 78 | 278 | 6.44e-69 | 216 |
| Msa0800480 | AT4G33910.1 | 38.926 | 298 | 149 | 11 | 7 | 289 | 3 | 282 | 4.92e-55 | 180 |
| Msa0800480 | AT2G23096.1 | 35.018 | 277 | 164 | 6 | 20 | 293 | 10 | 273 | 1.95e-46 | 157 |
| Msa0800480 | AT4G25600.1 | 31.731 | 208 | 110 | 6 | 81 | 288 | 62 | 237 | 4.79e-24 | 99.4 |
| Msa0800480 | AT2G43080.2 | 49.038 | 104 | 45 | 2 | 79 | 180 | 78 | 175 | 2.26e-22 | 92.4 |
| Msa0800480 | AT4G25600.3 | 31.034 | 203 | 108 | 6 | 86 | 288 | 6 | 176 | 2.49e-21 | 90.5 |
| Msa0800480 | AT4G25600.4 | 31.034 | 203 | 108 | 6 | 86 | 288 | 3 | 173 | 2.84e-21 | 90.5 |
| Msa0800480 | AT4G25600.2 | 31.034 | 203 | 108 | 6 | 86 | 288 | 15 | 185 | 3.99e-21 | 90.1 |
Find 80 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTATTTGTTTATTGTATT+TGG | 0.146898 | 5_3:+13863048 | None:intergenic |
| TAGAGAAGGCCCCACATAAA+TGG | 0.239782 | 5_3:+13862922 | None:intergenic |
| GGTGGTTGTCCGGTAATTAA+AGG | 0.264632 | 5_3:-13864135 | Msa0800480:CDS |
| GGTATACTTGTTACATCTAT+TGG | 0.280373 | 5_3:+13863008 | None:intergenic |
| CACTTATTTCCTTTAATTAC+CGG | 0.297860 | 5_3:+13864126 | None:intergenic |
| AGTAAAGCATCACCTCTCTT+TGG | 0.342180 | 5_3:+13864363 | None:intergenic |
| GCTGAGACTTTGCACATGAT+TGG | 0.347183 | 5_3:+13863198 | None:intergenic |
| GAGGTAAGATCGTTGGGTTT+AGG | 0.404374 | 5_3:+13867217 | None:intergenic |
| AGAGGGTGTGGAAGAAAGAA+TGG | 0.412168 | 5_3:+13867491 | None:intergenic |
| GATGAATATAACACAAAGAA+TGG | 0.412374 | 5_3:-13864630 | Msa0800480:CDS |
| CTGAAATTCCCCTTAGCAGC+AGG | 0.415882 | 5_3:+13864444 | None:intergenic |
| ACTTCGTACAATGGAGCTTA+AGG | 0.418011 | 5_3:-13863171 | Msa0800480:three_prime_UTR |
| ATGAATATAACACAAAGAAT+GGG | 0.423938 | 5_3:-13864629 | Msa0800480:CDS |
| TTCATTGACGCGGATCCATT+TGG | 0.424011 | 5_3:+13864095 | None:intergenic |
| TCTGTTGTTGCCCATTTATG+TGG | 0.428208 | 5_3:-13862933 | Msa0800480:three_prime_UTR |
| AAACGTTTGCAGCGTGATGC+GGG | 0.430352 | 5_3:-13863139 | Msa0800480:three_prime_UTR |
| CAAGTTCTACATTATGAAGT+TGG | 0.432869 | 5_3:-13864687 | Msa0800480:CDS |
| TGTAGAGTGCGTACGAGCTC+TGG | 0.433588 | 5_3:-13865109 | Msa0800480:intron |
| CTGTTGTTGCCCATTTATGT+GGG | 0.443084 | 5_3:-13862932 | Msa0800480:three_prime_UTR |
| ACTTGAGTATATGTTACAAT+AGG | 0.464471 | 5_3:-13864066 | Msa0800480:intron |
| ATAACTTTCAGGTGGTTGTC+CGG | 0.466448 | 5_3:-13864145 | Msa0800480:intron |
| AAATGATGATGAAGAAGGTA+AGG | 0.476008 | 5_3:-13867082 | Msa0800480:CDS |
| CAGATATTCACATTCCTCCT+TGG | 0.476063 | 5_3:+13865323 | None:intergenic |
| AGAGAAGGCCCCACATAAAT+GGG | 0.480791 | 5_3:+13862923 | None:intergenic |
| AAACGAGAAGAATGAGGATA+AGG | 0.480852 | 5_3:+13867278 | None:intergenic |
| ACAGTTGTTGATAGCGAGAC+TGG | 0.480980 | 5_3:-13865267 | Msa0800480:CDS |
| AACAATGGAGGTAAGATCGT+TGG | 0.490361 | 5_3:+13867210 | None:intergenic |
| ACAATGGAGGTAAGATCGTT+GGG | 0.491811 | 5_3:+13867211 | None:intergenic |
| ACTGTTGACTTGTGCATACT+CGG | 0.491867 | 5_3:+13865285 | None:intergenic |
| GATGCATCTAAAGTTGCATC+CGG | 0.502828 | 5_3:+13864324 | None:intergenic |
| TATAATGAGCTTTCTGATTG+TGG | 0.504044 | 5_3:-13864408 | Msa0800480:CDS |
| ATAAGTGGTCAAGTACCAAA+TGG | 0.506402 | 5_3:-13864110 | Msa0800480:CDS |
| GACAGTGTTCCCTGCTGCTA+AGG | 0.510901 | 5_3:-13864454 | Msa0800480:CDS |
| AGTGGGTTGAAGTTGTATCA+TGG | 0.519666 | 5_3:-13867053 | Msa0800480:CDS |
| TTAGATGCATCAAGCTTGCA+TGG | 0.521772 | 5_3:-13864312 | Msa0800480:intron |
| AACAAATAACAATGATACAC+AGG | 0.523177 | 5_3:+13862960 | None:intergenic |
| TACAGTACAGATGTTGAAGA+AGG | 0.524814 | 5_3:-13864483 | Msa0800480:intron |
| ATAATGAGCTTTCTGATTGT+GGG | 0.530607 | 5_3:-13864407 | Msa0800480:CDS |
| AAGAAGGTAAGGGTGAACAG+TGG | 0.530724 | 5_3:-13867071 | Msa0800480:CDS |
| ACAGTGTTCCCTGCTGCTAA+GGG | 0.531155 | 5_3:-13864453 | Msa0800480:CDS |
| TTGTGATACACAAAAGCTCT+AGG | 0.533206 | 5_3:+13867027 | None:intergenic |
| CTGGAAAGAGCAAAGACAGC+AGG | 0.539433 | 5_3:-13865248 | Msa0800480:intron |
| ATTAGAAATGATGATGAAGA+AGG | 0.541569 | 5_3:-13867087 | Msa0800480:intron |
| CACAATCTTATCACGTCCCC+TGG | 0.546111 | 5_3:+13865075 | None:intergenic |
| CAGTACAGATGTTGAAGAAG+GGG | 0.549364 | 5_3:-13864481 | Msa0800480:CDS |
| AGGTGGGGTTACTTGCCTAC+AGG | 0.550750 | 5_3:+13865013 | None:intergenic |
| GTGGGTTGAAGTTGTATCAT+GGG | 0.551409 | 5_3:-13867052 | Msa0800480:CDS |
| GAAACGTTTGCAGCGTGATG+CGG | 0.564649 | 5_3:-13863140 | Msa0800480:three_prime_UTR |
| AGAAGGTAAGGGTGAACAGT+GGG | 0.565306 | 5_3:-13867070 | Msa0800480:CDS |
| AATGGAGCTTAAGGTCTCAA+AGG | 0.569975 | 5_3:-13863162 | Msa0800480:three_prime_UTR |
| ATACACAGGGCAAATGAGAT+CGG | 0.574222 | 5_3:+13862974 | None:intergenic |
| ATACTGTTACGACTAGGTAG+AGG | 0.575003 | 5_3:+13867473 | None:intergenic |
| ACAGTACAGATGTTGAAGAA+GGG | 0.576370 | 5_3:-13864482 | Msa0800480:intron |
| TGTTGTTGCCCATTTATGTG+GGG | 0.590515 | 5_3:-13862931 | Msa0800480:three_prime_UTR |
| TGAAATTCCCCTTAGCAGCA+GGG | 0.595044 | 5_3:+13864445 | None:intergenic |
| AATGATGATGAAGAAGGTAA+GGG | 0.600100 | 5_3:-13867081 | Msa0800480:CDS |
| TTCCGAAAACGAGAAGAATG+AGG | 0.600315 | 5_3:+13867272 | None:intergenic |
| CGGTAATTAAAGGAAATAAG+TGG | 0.603669 | 5_3:-13864125 | Msa0800480:CDS |
| AACGTTTGCAGCGTGATGCG+GGG | 0.604419 | 5_3:-13863138 | Msa0800480:three_prime_UTR |
| TGAATATAACACAAAGAATG+GGG | 0.607097 | 5_3:-13864628 | Msa0800480:CDS |
| GATTGGAAGAAGGAATGGAG+AGG | 0.608811 | 5_3:+13867248 | None:intergenic |
| CTTTCAATTAAGCCAAAGAG+AGG | 0.612559 | 5_3:-13864375 | Msa0800480:CDS |
| CAATATACAGAGCACGGTGA+AGG | 0.613394 | 5_3:-13864714 | Msa0800480:intron |
| TTACGACTAGGTAGAGGGTG+TGG | 0.616944 | 5_3:+13867479 | None:intergenic |
| TTGTTCATAACACCGTCGAT+AGG | 0.618672 | 5_3:-13867192 | Msa0800480:intron |
| ATCGACGGTGTTATGAACAA+TGG | 0.621359 | 5_3:+13867195 | None:intergenic |
| TACTGTTACGACTAGGTAGA+GGG | 0.634805 | 5_3:+13867474 | None:intergenic |
| CAGTGTTCCCTGCTGCTAAG+GGG | 0.641768 | 5_3:-13864452 | Msa0800480:CDS |
| TCAGCTAATACTTCGTACAA+TGG | 0.650505 | 5_3:-13863180 | Msa0800480:three_prime_UTR |
| TCAAGAAAGTAGTCATAGTG+AGG | 0.653721 | 5_3:+13864651 | None:intergenic |
| GACGGTGTTATGAACAATGG+AGG | 0.664067 | 5_3:+13867198 | None:intergenic |
| GAATATAACACAAAGAATGG+GGG | 0.666678 | 5_3:-13864627 | Msa0800480:CDS |
| TTTGTAATACTGTTACGACT+AGG | 0.667886 | 5_3:+13867467 | None:intergenic |
| GGAATTTCAGTAATGTGCCG+TGG | 0.673959 | 5_3:-13864431 | Msa0800480:CDS |
| ACAGAAACGTTACCTATCGA+CGG | 0.683390 | 5_3:+13867180 | None:intergenic |
| GGGGACGTGATAAGATTGTG+AGG | 0.685334 | 5_3:-13865072 | Msa0800480:CDS |
| ACAAATAACAATGATACACA+GGG | 0.687341 | 5_3:+13862961 | None:intergenic |
| AGTACAGATGTTGAAGAAGG+GGG | 0.701130 | 5_3:-13864480 | Msa0800480:CDS |
| TCAGAAAGCTCATTATACCA+CGG | 0.716313 | 5_3:+13864414 | None:intergenic |
| ATAATCTGAGTAGACCAAGG+AGG | 0.746271 | 5_3:-13865337 | Msa0800480:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATGCTATTTATATATTA+AGG | - | chr5_3:13863675-13863694 | Msa0800480:intron | 10.0% |
| !!! | ATATGCTATTTATATATTAA+GGG | - | chr5_3:13863676-13863695 | Msa0800480:intron | 10.0% |
| !!! | ATTATTTTTGTAAGTTATAT+TGG | + | chr5_3:13863828-13863847 | None:intergenic | 10.0% |
| !!! | TAAAAAAGAAATTAATTTTG+CGG | - | chr5_3:13864774-13864793 | Msa0800480:intron | 10.0% |
| !!! | ATATTAAATTACTTTTTTGA+GGG | + | chr5_3:13866695-13866714 | None:intergenic | 10.0% |
| !!! | ATGAACTATATATATGTTTT+TGG | - | chr5_3:13863550-13863569 | Msa0800480:intron | 15.0% |
| !!! | AAGTTAGTTTTTTGTTTTAA+AGG | - | chr5_3:13864288-13864307 | Msa0800480:intron | 15.0% |
| !!! | AGTTAGTTTTTTGTTTTAAA+GGG | - | chr5_3:13864289-13864308 | Msa0800480:intron | 15.0% |
| !! | CATGAAATAGAATAAAAATT+GGG | - | chr5_3:13864436-13864455 | Msa0800480:CDS | 15.0% |
| !! | ATGAAATAGAATAAAAATTG+GGG | - | chr5_3:13864437-13864456 | Msa0800480:CDS | 15.0% |
| !!! | AAAAAAAAGAGTTAATTTTG+TGG | - | chr5_3:13864576-13864595 | Msa0800480:intron | 15.0% |
| !!! | AAAAAAAGAGTTAATTTTGT+GGG | - | chr5_3:13864577-13864596 | Msa0800480:intron | 15.0% |
| !!! | AAAAAAGAAATTAATTTTGC+GGG | - | chr5_3:13864775-13864794 | Msa0800480:intron | 15.0% |
| !! | TAATATTACACAATCATTAA+GGG | - | chr5_3:13864818-13864837 | Msa0800480:intron | 15.0% |
| !! | AAAAAGTAAATATAATAGGT+GGG | + | chr5_3:13865460-13865479 | None:intergenic | 15.0% |
| !! | AAAAAAGTAAATATAATAGG+TGG | + | chr5_3:13865461-13865480 | None:intergenic | 15.0% |
| !!! | TATTAAATTACTTTTTTGAG+GGG | + | chr5_3:13866694-13866713 | None:intergenic | 15.0% |
| !!! | GATATTAAATTACTTTTTTG+AGG | + | chr5_3:13866696-13866715 | None:intergenic | 15.0% |
| !!! | GTTAATTTTTTTTCATACAA+GGG | + | chr5_3:13866951-13866970 | None:intergenic | 15.0% |
| !! | ATAAGTTATTACTGTAATTA+TGG | + | chr5_3:13866984-13867003 | None:intergenic | 15.0% |
| !! | TACATATAAATGAAAAAGAT+GGG | + | chr5_3:13867386-13867405 | None:intergenic | 15.0% |
| !! | ACTTATTTGTTTATTGTATT+TGG | + | chr5_3:13867409-13867428 | None:intergenic | 15.0% |
| !! | TATGAATCGCATTAATAAAA+TGG | + | chr5_3:13863515-13863534 | None:intergenic | 20.0% |
| !!! | ATAAGTTTTGTGAAAATGTT+TGG | - | chr5_3:13863736-13863755 | Msa0800480:intron | 20.0% |
| !!! | TATATTTCATAAGCTGTTTT+CGG | - | chr5_3:13863954-13863973 | Msa0800480:intron | 20.0% |
| !! | AAAAAACACTATTCCAAATT+AGG | + | chr5_3:13864322-13864341 | None:intergenic | 20.0% |
| !! | GCATGAAATAGAATAAAAAT+TGG | - | chr5_3:13864435-13864454 | Msa0800480:CDS | 20.0% |
| !! | TGAAATAGAATAAAAATTGG+GGG | - | chr5_3:13864438-13864457 | Msa0800480:CDS | 20.0% |
| !!! | AAAAAAGAGTTAATTTTGTG+GGG | - | chr5_3:13864578-13864597 | Msa0800480:intron | 20.0% |
| !!! | AAAAAGAAATTAATTTTGCG+GGG | - | chr5_3:13864776-13864795 | Msa0800480:intron | 20.0% |
| !! | CTAATATTACACAATCATTA+AGG | - | chr5_3:13864817-13864836 | Msa0800480:intron | 20.0% |
| !! | ACTAAAATCATATTCAAACA+TGG | + | chr5_3:13864989-13865008 | None:intergenic | 20.0% |
| !! | AAAAGTAAATATAATAGGTG+GGG | + | chr5_3:13865459-13865478 | None:intergenic | 20.0% |
| !! | TTACAAAAAGAGTTTATTTC+TGG | - | chr5_3:13865507-13865526 | Msa0800480:intron | 20.0% |
| !! | ATGAATATAACACAAAGAAT+GGG | - | chr5_3:13865825-13865844 | Msa0800480:intron | 20.0% |
| !! | AGAAAGAAAAAAAACAGAAT+AGG | + | chr5_3:13866582-13866601 | None:intergenic | 20.0% |
| !!! | CTGTTTTTTTTCTTTCTTTA+AGG | - | chr5_3:13866585-13866604 | Msa0800480:intron | 20.0% |
| !!! | TTTTTTTTCTTTCTTTAAGG+TGG | - | chr5_3:13866588-13866607 | Msa0800480:intron | 20.0% |
| !!! | TTTTTTTCTTTCTTTAAGGT+GGG | - | chr5_3:13866589-13866608 | Msa0800480:intron | 20.0% |
| !!! | ATTAAATTACTTTTTTGAGG+GGG | + | chr5_3:13866693-13866712 | None:intergenic | 20.0% |
| !!! | CGTTAATTTTTTTTCATACA+AGG | + | chr5_3:13866952-13866971 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGTTTAATAGCTT+AGG | - | chr5_3:13867347-13867366 | Msa0800480:CDS | 20.0% |
| !! | GTACATATAAATGAAAAAGA+TGG | + | chr5_3:13867387-13867406 | None:intergenic | 20.0% |
| ! | ATCTGAAAAAATTCAACAGA+TGG | + | chr5_3:13863040-13863059 | None:intergenic | 25.0% |
| !! | ATTAGAAATGATGATGAAGA+AGG | - | chr5_3:13863367-13863386 | Msa0800480:intron | 25.0% |
| !! | TTTTGTGTATCACAATTTTC+TGG | - | chr5_3:13863435-13863454 | Msa0800480:intron | 25.0% |
| ! | AATAAGTTGTTTACACAAAC+AGG | - | chr5_3:13864222-13864241 | Msa0800480:intron | 25.0% |
| ! | ATAAGTTGTTTACACAAACA+GGG | - | chr5_3:13864223-13864242 | Msa0800480:intron | 25.0% |
| ! | GAAAGAATCCTATATGTTAA+GGG | - | chr5_3:13864366-13864385 | Msa0800480:CDS | 25.0% |
| !! | ACCTAACAAGTTAATTTTGT+GGG | - | chr5_3:13864540-13864559 | Msa0800480:intron | 25.0% |
| ! | TACACACTAATAATAGAAGT+AGG | - | chr5_3:13864626-13864645 | Msa0800480:CDS | 25.0% |
| ! | ACACACTAATAATAGAAGTA+GGG | - | chr5_3:13864627-13864646 | Msa0800480:CDS | 25.0% |
| !! | ACCTAACAAGTTAATTTTGT+GGG | - | chr5_3:13864540-13864559 | Msa0800480:intron | 25.0% |
| ! | CTAAGTAGATAGTTAAACAA+AGG | + | chr5_3:13864880-13864899 | None:intergenic | 25.0% |
| !! | AAAACTATTTGTGTTTTGCT+TGG | - | chr5_3:13864912-13864931 | Msa0800480:intron | 25.0% |
| !!! | AATATGATTTTAGTGTGATG+TGG | - | chr5_3:13864995-13865014 | Msa0800480:intron | 25.0% |
| ! | AATAAATATTAATGCTCCAC+AGG | + | chr5_3:13865045-13865064 | None:intergenic | 25.0% |
| ! | AGAAAGAAATATGTGAAGAT+GGG | + | chr5_3:13865322-13865341 | None:intergenic | 25.0% |
| ! | TAGAAAGAAATATGTGAAGA+TGG | + | chr5_3:13865323-13865342 | None:intergenic | 25.0% |
| ! | TGTTAACTGAAAATATTCAG+TGG | + | chr5_3:13865633-13865652 | None:intergenic | 25.0% |
| ! | CATAATAAAAGAAAGCTAGA+TGG | + | chr5_3:13865659-13865678 | None:intergenic | 25.0% |
| !!! | CATCTAGCTTTCTTTTATTA+TGG | - | chr5_3:13865657-13865676 | Msa0800480:intron | 25.0% |
| !! | TTATTATGGTCTAAGATAGT+AGG | - | chr5_3:13865671-13865690 | Msa0800480:intron | 25.0% |
| ! | GATGAATATAACACAAAGAA+TGG | - | chr5_3:13865824-13865843 | Msa0800480:intron | 25.0% |
| ! | TGAATATAACACAAAGAATG+GGG | - | chr5_3:13865826-13865845 | Msa0800480:intron | 25.0% |
| ! | TTACTAACTTCAATTTGTCT+TGG | - | chr5_3:13865902-13865921 | Msa0800480:intron | 25.0% |
| ! | CACTTATTTCCTTTAATTAC+CGG | + | chr5_3:13866331-13866350 | None:intergenic | 25.0% |
| ! | ACTTGAGTATATGTTACAAT+AGG | - | chr5_3:13866388-13866407 | Msa0800480:intron | 25.0% |
| ! | TTATTACAACAATACAACAG+AGG | + | chr5_3:13866429-13866448 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTCTTTAAGGTG+GGG | - | chr5_3:13866590-13866609 | Msa0800480:intron | 25.0% |
| !!! | TTAAATTACTTTTTTGAGGG+GGG | + | chr5_3:13866692-13866711 | None:intergenic | 25.0% |
| ! | TCAATTAAAACTGTAGATCT+AGG | - | chr5_3:13866793-13866812 | Msa0800480:intron | 25.0% |
| ! | CAATTAAAACTGTAGATCTA+GGG | - | chr5_3:13866794-13866813 | Msa0800480:intron | 25.0% |
| !!! | ATATTTAATTTGCTAGTTGC+TGG | - | chr5_3:13867170-13867189 | Msa0800480:intron | 25.0% |
| ! | ACAAATAACAATGATACACA+GGG | + | chr5_3:13867496-13867515 | None:intergenic | 25.0% |
| ! | AACAAATAACAATGATACAC+AGG | + | chr5_3:13867497-13867516 | None:intergenic | 25.0% |
| TTTGTAATACTGTTACGACT+AGG | + | chr5_3:13862990-13863009 | None:intergenic | 30.0% | |
| !!! | TTGAATTTTTTCAGATCTCG+TGG | - | chr5_3:13863044-13863063 | Msa0800480:three_prime_UTR | 30.0% |
| TCTGAAAAACTCAACAACAA+TGG | - | chr5_3:13863068-13863087 | Msa0800480:three_prime_UTR | 30.0% | |
| !!! | TGATTCCGCCTTTTTTTTTT+TGG | - | chr5_3:13863319-13863338 | Msa0800480:intron | 30.0% |
| CATCAGCACCAAAAAAAAAA+AGG | + | chr5_3:13863330-13863349 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTGGTGCTGATG+AGG | - | chr5_3:13863330-13863349 | Msa0800480:intron | 30.0% |
| ! | AAATGATGATGAAGAAGGTA+AGG | - | chr5_3:13863372-13863391 | Msa0800480:intron | 30.0% |
| ! | AATGATGATGAAGAAGGTAA+GGG | - | chr5_3:13863373-13863392 | Msa0800480:intron | 30.0% |
| ! | ATTTCTCTGTTTTGCATGTT+TGG | - | chr5_3:13863611-13863630 | Msa0800480:intron | 30.0% |
| AGCATATAGATAAGCACTTA+TGG | + | chr5_3:13863663-13863682 | None:intergenic | 30.0% | |
| TTATATATTAAGGGTCGCTT+TGG | - | chr5_3:13863685-13863704 | Msa0800480:intron | 30.0% | |
| AGAACTTATGAAAACAGCTT+AGG | - | chr5_3:13863760-13863779 | Msa0800480:intron | 30.0% | |
| TTATCATGTGTGACATTGTT+TGG | - | chr5_3:13863906-13863925 | Msa0800480:intron | 30.0% | |
| AAGTTATCATGCTAAGCTTA+TGG | + | chr5_3:13863987-13864006 | None:intergenic | 30.0% | |
| GCTATATGCTTAAAAATAGC+AGG | - | chr5_3:13864092-13864111 | Msa0800480:CDS | 30.0% | |
| GGAAAGAATCCTATATGTTA+AGG | - | chr5_3:13864365-13864384 | Msa0800480:CDS | 30.0% | |
| AATCCTATATGTTAAGGGTT+TGG | - | chr5_3:13864371-13864390 | Msa0800480:CDS | 30.0% | |
| ! | AAACCTTGTTTATGCATATC+AGG | + | chr5_3:13864502-13864521 | None:intergenic | 30.0% |
| ! | CACCTAACAAGTTAATTTTG+TGG | - | chr5_3:13864539-13864558 | Msa0800480:intron | 30.0% |
| !! | ACCCACAAAATTAACTTGTT+AGG | + | chr5_3:13864544-13864563 | None:intergenic | 30.0% |
| CACACTAATAATAGAAGTAG+GGG | - | chr5_3:13864628-13864647 | Msa0800480:CDS | 30.0% | |
| ACACTAATAATAGAAGTAGG+GGG | - | chr5_3:13864629-13864648 | Msa0800480:CDS | 30.0% | |
| ! | AACCTTATTTATGCCATATC+AGG | + | chr5_3:13864702-13864721 | None:intergenic | 30.0% |
| ! | CACCTAACAAGTTAATTTTG+TGG | - | chr5_3:13864539-13864558 | Msa0800480:intron | 30.0% |
| !! | ACCCACAAAATTAACTTGTT+AGG | + | chr5_3:13864544-13864563 | None:intergenic | 30.0% |
| ! | TTTTAATCACTTGTGGTTCT+TGG | - | chr5_3:13864843-13864862 | Msa0800480:intron | 30.0% |
| TCAAACATGGAATTCAAACA+GGG | + | chr5_3:13864976-13864995 | None:intergenic | 30.0% | |
| TTCAAACATGGAATTCAAAC+AGG | + | chr5_3:13864977-13864996 | None:intergenic | 30.0% | |
| TTCAGCTAAACTTTAGTGAT+TGG | + | chr5_3:13865098-13865117 | None:intergenic | 30.0% | |
| ACACTTTAACAGAGAAAGAT+AGG | + | chr5_3:13865243-13865262 | None:intergenic | 30.0% | |
| GAAAGAAATATGTGAAGATG+GGG | + | chr5_3:13865321-13865340 | None:intergenic | 30.0% | |
| !! | GACTTTACTTTTATTCCTGT+AGG | - | chr5_3:13865426-13865445 | Msa0800480:intron | 30.0% |
| TACTCAAAAGTTCTCACTAA+CGG | + | chr5_3:13865584-13865603 | None:intergenic | 30.0% | |
| CAAGTTCTACATTATGAAGT+TGG | - | chr5_3:13865767-13865786 | Msa0800480:intron | 30.0% | |
| GAATATAACACAAAGAATGG+GGG | - | chr5_3:13865827-13865846 | Msa0800480:intron | 30.0% | |
| TATAATGAGCTTTCTGATTG+TGG | - | chr5_3:13866046-13866065 | Msa0800480:intron | 30.0% | |
| ATAATGAGCTTTCTGATTGT+GGG | - | chr5_3:13866047-13866066 | Msa0800480:intron | 30.0% | |
| !! | CTGTTTTCTTGATAACTTTC+AGG | - | chr5_3:13866298-13866317 | Msa0800480:intron | 30.0% |
| !! | TTTTCTTGATAACTTTCAGG+TGG | - | chr5_3:13866301-13866320 | Msa0800480:intron | 30.0% |
| CGGTAATTAAAGGAAATAAG+TGG | - | chr5_3:13866329-13866348 | Msa0800480:intron | 30.0% | |
| !! | AAGTTTTGTATTCATTGACG+CGG | + | chr5_3:13866372-13866391 | None:intergenic | 30.0% |
| CAATCATTTAGCTAAGTATC+AGG | + | chr5_3:13866502-13866521 | None:intergenic | 30.0% | |
| TATCTGATATGTGATCCAAT+GGG | + | chr5_3:13866725-13866744 | None:intergenic | 30.0% | |
| ATATCTGATATGTGATCCAA+TGG | + | chr5_3:13866726-13866745 | None:intergenic | 30.0% | |
| ! | TGCACCTATTGTGTTTATTT+TGG | - | chr5_3:13866768-13866787 | Msa0800480:intron | 30.0% |
| GAAGCCAAAATAAACACAAT+AGG | + | chr5_3:13866775-13866794 | None:intergenic | 30.0% | |
| CTTATGACATGTGTATAAAG+CGG | - | chr5_3:13866883-13866902 | Msa0800480:intron | 30.0% | |
| !! | GATTATCAACTTCTGCTTTT+CGG | - | chr5_3:13867141-13867160 | Msa0800480:intron | 30.0% |
| !! | ATTATCAACTTCTGCTTTTC+GGG | - | chr5_3:13867142-13867161 | Msa0800480:intron | 30.0% |
| !! | TGTTGATTGACCTATTTTTC+AGG | - | chr5_3:13867214-13867233 | Msa0800480:CDS | 30.0% |
| ! | GGTATACTTGTTACATCTAT+TGG | + | chr5_3:13867449-13867468 | None:intergenic | 30.0% |
| ! | GATGAAGATGATTTTCGTGA+TGG | + | chr5_3:13863117-13863136 | None:intergenic | 35.0% |
| AAACGAGAAGAATGAGGATA+AGG | + | chr5_3:13863179-13863198 | None:intergenic | 35.0% | |
| ! | ATCCTCATTCTTCTCGTTTT+CGG | - | chr5_3:13863180-13863199 | Msa0800480:three_prime_UTR | 35.0% |
| !!! | GTTTTGATTGGAAGAAGGAA+TGG | + | chr5_3:13863214-13863233 | None:intergenic | 35.0% |
| CAGCACCAAAAAAAAAAAGG+CGG | + | chr5_3:13863327-13863346 | None:intergenic | 35.0% | |
| TTGTGATACACAAAAGCTCT+AGG | + | chr5_3:13863430-13863449 | None:intergenic | 35.0% | |
| ACAAACCACAACCTTGATTA+AGG | + | chr5_3:13864249-13864268 | None:intergenic | 35.0% | |
| ! | CAATTTGTAGACTAGTCACA+CGG | + | chr5_3:13864345-13864364 | None:intergenic | 35.0% |
| !! | GTGTGACTAGTCTACAAATT+GGG | - | chr5_3:13864344-13864363 | Msa0800480:CDS | 35.0% |
| GTACCAAACCCTTAACATAT+AGG | + | chr5_3:13864377-13864396 | None:intergenic | 35.0% | |
| GTTTAGTGCATAGCAATGAA+AGG | - | chr5_3:13864460-13864479 | Msa0800480:CDS | 35.0% | |
| TAGCCTGATATGCATAAACA+AGG | - | chr5_3:13864496-13864515 | Msa0800480:intron | 35.0% | |
| ! | TAATTTTGTGGGGTTGAGTT+AGG | - | chr5_3:13864588-13864607 | Msa0800480:intron | 35.0% |
| AGCCTGATATGGCATAAATA+AGG | - | chr5_3:13864697-13864716 | Msa0800480:CDS | 35.0% | |
| ! | AAGGGTCTTTTAATCACTTG+TGG | - | chr5_3:13864836-13864855 | Msa0800480:intron | 35.0% |
| CTTGGTTAAATGATGCTTGA+TGG | - | chr5_3:13864930-13864949 | Msa0800480:intron | 35.0% | |
| GTTAAATGATGCTTGATGGA+AGG | - | chr5_3:13864934-13864953 | Msa0800480:intron | 35.0% | |
| AAACTTTAGTGATTGGAAGG+TGG | + | chr5_3:13865091-13865110 | None:intergenic | 35.0% | |
| GCTAAACTTTAGTGATTGGA+AGG | + | chr5_3:13865094-13865113 | None:intergenic | 35.0% | |
| TGAATAATCTGAGTAGACCA+AGG | - | chr5_3:13865114-13865133 | Msa0800480:intron | 35.0% | |
| !! | GTGTCCTCTGAAATTGAAAA+TGG | - | chr5_3:13865259-13865278 | Msa0800480:CDS | 35.0% |
| ! | GCAACCATTTTCAATTTCAG+AGG | + | chr5_3:13865266-13865285 | None:intergenic | 35.0% |
| !! | AGTGAGAACTTTTGAGTAGT+TGG | - | chr5_3:13865586-13865605 | Msa0800480:intron | 35.0% |
| ! | ATGCTTGCTGAAGTATATGA+TGG | + | chr5_3:13865703-13865722 | None:intergenic | 35.0% |
| TCAAGAAAGTAGTCATAGTG+AGG | + | chr5_3:13865806-13865825 | None:intergenic | 35.0% | |
| TACAGTACAGATGTTGAAGA+AGG | - | chr5_3:13865971-13865990 | Msa0800480:intron | 35.0% | |
| ACAGTACAGATGTTGAAGAA+GGG | - | chr5_3:13865972-13865991 | Msa0800480:intron | 35.0% | |
| TCAGAAAGCTCATTATACCA+CGG | + | chr5_3:13866043-13866062 | None:intergenic | 35.0% | |
| CTTTCTGATTGTGGGAAAAA+AGG | - | chr5_3:13866055-13866074 | Msa0800480:intron | 35.0% | |
| CTTTCAATTAAGCCAAAGAG+AGG | - | chr5_3:13866079-13866098 | Msa0800480:intron | 35.0% | |
| ATAAGTGGTCAAGTACCAAA+TGG | - | chr5_3:13866344-13866363 | Msa0800480:intron | 35.0% | |
| !! | TCATCACAATAGCTTGCTAT+TGG | + | chr5_3:13866664-13866683 | None:intergenic | 35.0% |
| TTTAATATCGTGTGACCCAT+TGG | - | chr5_3:13866707-13866726 | Msa0800480:intron | 35.0% | |
| !! | GGGAAGTGCTTATCATATAA+GGG | + | chr5_3:13867014-13867033 | None:intergenic | 35.0% |
| !! | TGGGAAGTGCTTATCATATA+AGG | + | chr5_3:13867015-13867034 | None:intergenic | 35.0% |
| TTCCCAAAATGTGTTTGTGT+GGG | - | chr5_3:13867029-13867048 | Msa0800480:CDS | 35.0% | |
| ! | TACCCACACAAACACATTTT+GGG | + | chr5_3:13867034-13867053 | None:intergenic | 35.0% |
| AATAGGTCAATCAACATGAG+AGG | + | chr5_3:13867210-13867229 | None:intergenic | 35.0% | |
| TCAGCTAATACTTCGTACAA+TGG | - | chr5_3:13867274-13867293 | Msa0800480:CDS | 35.0% | |
| TACTGTTACGACTAGGTAGA+GGG | + | chr5_3:13862983-13863002 | None:intergenic | 40.0% | |
| ATACTGTTACGACTAGGTAG+AGG | + | chr5_3:13862984-13863003 | None:intergenic | 40.0% | |
| TTCCGAAAACGAGAAGAATG+AGG | + | chr5_3:13863185-13863204 | None:intergenic | 40.0% | |
| !!! | GGCAAGTTTTGATTGGAAGA+AGG | + | chr5_3:13863219-13863238 | None:intergenic | 40.0% |
| !! | GGGTTTAGGCAAGTTTTGAT+TGG | + | chr5_3:13863226-13863245 | None:intergenic | 40.0% |
| ACAATGGAGGTAAGATCGTT+GGG | + | chr5_3:13863246-13863265 | None:intergenic | 40.0% | |
| AACAATGGAGGTAAGATCGT+TGG | + | chr5_3:13863247-13863266 | None:intergenic | 40.0% | |
| !! | ATCGACGGTGTTATGAACAA+TGG | + | chr5_3:13863262-13863281 | None:intergenic | 40.0% |
| TTGTTCATAACACCGTCGAT+AGG | - | chr5_3:13863262-13863281 | Msa0800480:intron | 40.0% | |
| ACAGAAACGTTACCTATCGA+CGG | + | chr5_3:13863277-13863296 | None:intergenic | 40.0% | |
| GGCGGAATCAAATCGAAAAA+CGG | + | chr5_3:13863309-13863328 | None:intergenic | 40.0% | |
| !! | AGTGGGTTGAAGTTGTATCA+TGG | - | chr5_3:13863401-13863420 | Msa0800480:intron | 40.0% |
| ! | GTGGGTTGAAGTTGTATCAT+GGG | - | chr5_3:13863402-13863421 | Msa0800480:intron | 40.0% |
| AAAGGGAACACGTCCTAATT+TGG | - | chr5_3:13864306-13864325 | Msa0800480:intron | 40.0% | |
| !! | CGTGTGACTAGTCTACAAAT+TGG | - | chr5_3:13864343-13864362 | Msa0800480:CDS | 40.0% |
| CTTTCTTTGGTATGTAGCCA+TGG | + | chr5_3:13864662-13864681 | None:intergenic | 40.0% | |
| CATGGCTACATACCAAAGAA+AGG | - | chr5_3:13864660-13864679 | Msa0800480:CDS | 40.0% | |
| ! | GTTGGACTTTAGCCTTTCTT+TGG | + | chr5_3:13864675-13864694 | None:intergenic | 40.0% |
| ATGCTTGATGGAAGGTTCAA+GGG | - | chr5_3:13864942-13864961 | Msa0800480:intron | 40.0% | |
| !! | TGTTTAACTTGAAGCTCCTG+TGG | - | chr5_3:13865026-13865045 | Msa0800480:CDS | 40.0% |
| ATAATCTGAGTAGACCAAGG+AGG | - | chr5_3:13865117-13865136 | Msa0800480:intron | 40.0% | |
| CAGATATTCACATTCCTCCT+TGG | + | chr5_3:13865134-13865153 | None:intergenic | 40.0% | |
| !! | ACTGTTGACTTGTGCATACT+CGG | + | chr5_3:13865172-13865191 | None:intergenic | 40.0% |
| CATTGTTTCGATTGCCAGTA+TGG | - | chr5_3:13865291-13865310 | Msa0800480:CDS | 40.0% | |
| !!! | TACGAGCTCTGGAACATTTT+TGG | - | chr5_3:13865356-13865375 | Msa0800480:intron | 40.0% |
| CATCACATGCTATCACTTAC+AGG | + | chr5_3:13865880-13865899 | None:intergenic | 40.0% | |
| CAGTACAGATGTTGAAGAAG+GGG | - | chr5_3:13865973-13865992 | Msa0800480:intron | 40.0% | |
| AGTACAGATGTTGAAGAAGG+GGG | - | chr5_3:13865974-13865993 | Msa0800480:intron | 40.0% | |
| ! | AGTAAAGCATCACCTCTCTT+TGG | + | chr5_3:13866094-13866113 | None:intergenic | 40.0% |
| !! | GAGGTGATGCTTTACTTTTC+TGG | - | chr5_3:13866098-13866117 | Msa0800480:intron | 40.0% |
| ! | GATGCATCTAAAGTTGCATC+CGG | + | chr5_3:13866133-13866152 | None:intergenic | 40.0% |
| TTAGATGCATCAAGCTTGCA+TGG | - | chr5_3:13866142-13866161 | Msa0800480:intron | 40.0% | |
| ! | ATAACTTTCAGGTGGTTGTC+CGG | - | chr5_3:13866309-13866328 | Msa0800480:intron | 40.0% |
| TATGCGTTGCACTATTGCAT+AGG | + | chr5_3:13866624-13866643 | None:intergenic | 40.0% | |
| !!! | CAAGGGTGAGTTGTTTTAGT+TGG | + | chr5_3:13866934-13866953 | None:intergenic | 40.0% |
| CTTCCCAAAATGTGTTTGTG+TGG | - | chr5_3:13867028-13867047 | Msa0800480:CDS | 40.0% | |
| ! | GTACCCACACAAACACATTT+TGG | + | chr5_3:13867035-13867054 | None:intergenic | 40.0% |
| CTCAGACAAGCCTGAAAAAT+AGG | + | chr5_3:13867227-13867246 | None:intergenic | 40.0% | |
| ACTTCGTACAATGGAGCTTA+AGG | - | chr5_3:13867283-13867302 | Msa0800480:CDS | 40.0% | |
| AATGGAGCTTAAGGTCTCAA+AGG | - | chr5_3:13867292-13867311 | Msa0800480:CDS | 40.0% | |
| ATACACAGGGCAAATGAGAT+CGG | + | chr5_3:13867483-13867502 | None:intergenic | 40.0% | |
| TCTGTTGTTGCCCATTTATG+TGG | - | chr5_3:13867521-13867540 | Msa0800480:five_prime_UTR | 40.0% | |
| CTGTTGTTGCCCATTTATGT+GGG | - | chr5_3:13867522-13867541 | Msa0800480:five_prime_UTR | 40.0% | |
| TGTTGTTGCCCATTTATGTG+GGG | - | chr5_3:13867523-13867542 | Msa0800480:five_prime_UTR | 40.0% | |
| ! | AGAGGGTGTGGAAGAAAGAA+TGG | + | chr5_3:13862966-13862985 | None:intergenic | 45.0% |
| GATTGGAAGAAGGAATGGAG+AGG | + | chr5_3:13863209-13863228 | None:intergenic | 45.0% | |
| GAGGTAAGATCGTTGGGTTT+AGG | + | chr5_3:13863240-13863259 | None:intergenic | 45.0% | |
| !! | GACGGTGTTATGAACAATGG+AGG | + | chr5_3:13863259-13863278 | None:intergenic | 45.0% |
| AAGAAGGTAAGGGTGAACAG+TGG | - | chr5_3:13863383-13863402 | Msa0800480:intron | 45.0% | |
| AGAAGGTAAGGGTGAACAGT+GGG | - | chr5_3:13863384-13863403 | Msa0800480:intron | 45.0% | |
| CACAAACAGGGCCTTAATCA+AGG | - | chr5_3:13864235-13864254 | Msa0800480:intron | 45.0% | |
| AAGTAGGGGGTTTAGTACCA+TGG | - | chr5_3:13864642-13864661 | Msa0800480:CDS | 45.0% | |
| AAGTCCAACGTAGCCTGATA+TGG | - | chr5_3:13864686-13864705 | Msa0800480:CDS | 45.0% | |
| TATGCCATATCAGGCTACGT+TGG | + | chr5_3:13864693-13864712 | None:intergenic | 45.0% | |
| GATGCTTGATGGAAGGTTCA+AGG | - | chr5_3:13864941-13864960 | Msa0800480:intron | 45.0% | |
| !! | ACAGTTGTTGATAGCGAGAC+TGG | - | chr5_3:13865187-13865206 | Msa0800480:intron | 45.0% |
| AAAGAGCAAAGACAGCAGGT+AGG | - | chr5_3:13865210-13865229 | Msa0800480:intron | 45.0% | |
| !!! | CTCTGGAACATTTTTGGCCA+GGG | - | chr5_3:13865362-13865381 | Msa0800480:intron | 45.0% |
| !!! | TCTGGAACATTTTTGGCCAG+GGG | - | chr5_3:13865363-13865382 | Msa0800480:intron | 45.0% |
| GCCTCACAATATACAGAGCA+CGG | - | chr5_3:13865734-13865753 | Msa0800480:intron | 45.0% | |
| ACCGTGCTCTGTATATTGTG+AGG | + | chr5_3:13865738-13865757 | None:intergenic | 45.0% | |
| CAATATACAGAGCACGGTGA+AGG | - | chr5_3:13865740-13865759 | Msa0800480:intron | 45.0% | |
| TGAAATTCCCCTTAGCAGCA+GGG | + | chr5_3:13866012-13866031 | None:intergenic | 45.0% | |
| GGAATTTCAGTAATGTGCCG+TGG | - | chr5_3:13866023-13866042 | Msa0800480:intron | 45.0% | |
| !!! | ACTTTTCTGGAGCATGAAGC+CGG | - | chr5_3:13866111-13866130 | Msa0800480:intron | 45.0% |
| GGTGGTTGTCCGGTAATTAA+AGG | - | chr5_3:13866319-13866338 | Msa0800480:intron | 45.0% | |
| TTCATTGACGCGGATCCATT+TGG | + | chr5_3:13866362-13866381 | None:intergenic | 45.0% | |
| !!! | TTACTTTTTTGAGGGGGGAG+AGG | + | chr5_3:13866687-13866706 | None:intergenic | 45.0% |
| GCTGAGACTTTGCACATGAT+TGG | + | chr5_3:13867259-13867278 | None:intergenic | 45.0% | |
| ATGAGATCGGAGCAAAAAGC+TGG | + | chr5_3:13867470-13867489 | None:intergenic | 45.0% | |
| AGAGAAGGCCCCACATAAAT+GGG | + | chr5_3:13867534-13867553 | None:intergenic | 45.0% | |
| TAGAGAAGGCCCCACATAAA+TGG | + | chr5_3:13867535-13867554 | None:intergenic | 45.0% | |
| !! | AAAAAAAAAGTAAATATAAT+AGG | + | chr5_3:13865464-13865483 | None:intergenic | 5.0% |
| TTACGACTAGGTAGAGGGTG+TGG | + | chr5_3:13862978-13862997 | None:intergenic | 50.0% | |
| CAGGGCCTTAATCAAGGTTG+TGG | - | chr5_3:13864241-13864260 | Msa0800480:intron | 50.0% | |
| AACTAGCAGCCTCGAACTCT+AGG | - | chr5_3:13864397-13864416 | Msa0800480:CDS | 50.0% | |
| TTGTTCCCTCCTAGAGTTCG+AGG | + | chr5_3:13864409-13864428 | None:intergenic | 50.0% | |
| CTGGAAAGAGCAAAGACAGC+AGG | - | chr5_3:13865206-13865225 | Msa0800480:intron | 50.0% | |
| GAAGATGGGGTTTGCCATAC+TGG | + | chr5_3:13865308-13865327 | None:intergenic | 50.0% | |
| !!! | GCTCTGGAACATTTTTGGCC+AGG | - | chr5_3:13865361-13865380 | Msa0800480:intron | 50.0% |
| CACAATCTTATCACGTCCCC+TGG | + | chr5_3:13865382-13865401 | None:intergenic | 50.0% | |
| GGGGACGTGATAAGATTGTG+AGG | - | chr5_3:13865382-13865401 | Msa0800480:intron | 50.0% | |
| ACAGTGTTCCCTGCTGCTAA+GGG | - | chr5_3:13866001-13866020 | Msa0800480:intron | 50.0% | |
| CTGAAATTCCCCTTAGCAGC+AGG | + | chr5_3:13866013-13866032 | None:intergenic | 50.0% | |
| ! | TCAACGGGCTTTCACAGTAG+AGG | - | chr5_3:13866259-13866278 | Msa0800480:intron | 50.0% |
| CGTTGCACTATTGCATAGGC+TGG | + | chr5_3:13866620-13866639 | None:intergenic | 50.0% | |
| GAAACGTTTGCAGCGTGATG+CGG | - | chr5_3:13867314-13867333 | Msa0800480:CDS | 50.0% | |
| AAACGTTTGCAGCGTGATGC+GGG | - | chr5_3:13867315-13867334 | Msa0800480:CDS | 50.0% | |
| TAGCAGCCTCGAACTCTAGG+AGG | - | chr5_3:13864400-13864419 | Msa0800480:CDS | 55.0% | |
| ! | AGCAGCCTCGAACTCTAGGA+GGG | - | chr5_3:13864401-13864420 | Msa0800480:CDS | 55.0% |
| TGTAGAGTGCGTACGAGCTC+TGG | - | chr5_3:13865345-13865364 | Msa0800480:intron | 55.0% | |
| AGGTGGGGTTACTTGCCTAC+AGG | + | chr5_3:13865444-13865463 | None:intergenic | 55.0% | |
| GACAGTGTTCCCTGCTGCTA+AGG | - | chr5_3:13866000-13866019 | Msa0800480:intron | 55.0% | |
| CAGTGTTCCCTGCTGCTAAG+GGG | - | chr5_3:13866002-13866021 | Msa0800480:intron | 55.0% | |
| TGTGCTGCCTTCTGCGTCAA+CGG | - | chr5_3:13866243-13866262 | Msa0800480:intron | 55.0% | |
| TGAAAGCCCGTTGACGCAGA+AGG | + | chr5_3:13866253-13866272 | None:intergenic | 55.0% | |
| AACGTTTGCAGCGTGATGCG+GGG | - | chr5_3:13867316-13867335 | Msa0800480:CDS | 55.0% | |
| GTGCTGCCTTCTGCGTCAAC+GGG | - | chr5_3:13866244-13866263 | Msa0800480:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 13862920 | 13867556 | 13862920 | ID=Msa0800480;Name=Msa0800480 |
| chr5_3 | mRNA | 13862920 | 13867556 | 13862920 | ID=Msa0800480-mRNA-1;Parent=Msa0800480;Name=Msa0800480-mRNA-1;_AED=0.12;_eAED=0.12;_QI=167|0.75|0.77|0.88|0.5|0.55|9|337|295 |
| chr5_3 | exon | 13862920 | 13863240 | 13862920 | ID=Msa0800480-mRNA-1:exon:5810;Parent=Msa0800480-mRNA-1 |
| chr5_3 | exon | 13864067 | 13864156 | 13864067 | ID=Msa0800480-mRNA-1:exon:5809;Parent=Msa0800480-mRNA-1 |
| chr5_3 | exon | 13864313 | 13864500 | 13864313 | ID=Msa0800480-mRNA-1:exon:5808;Parent=Msa0800480-mRNA-1 |
| chr5_3 | exon | 13864597 | 13864726 | 13864597 | ID=Msa0800480-mRNA-1:exon:5807;Parent=Msa0800480-mRNA-1 |
| chr5_3 | exon | 13864894 | 13864907 | 13864894 | ID=Msa0800480-mRNA-1:exon:5806;Parent=Msa0800480-mRNA-1 |
| chr5_3 | exon | 13865025 | 13865126 | 13865025 | ID=Msa0800480-mRNA-1:exon:5805;Parent=Msa0800480-mRNA-1 |
| chr5_3 | exon | 13865249 | 13865346 | 13865249 | ID=Msa0800480-mRNA-1:exon:5804;Parent=Msa0800480-mRNA-1 |
| chr5_3 | exon | 13867020 | 13867104 | 13867020 | ID=Msa0800480-mRNA-1:exon:5803;Parent=Msa0800480-mRNA-1 |
| chr5_3 | exon | 13867193 | 13867556 | 13867193 | ID=Msa0800480-mRNA-1:exon:5802;Parent=Msa0800480-mRNA-1 |
| chr5_3 | five_prime_UTR | 13867390 | 13867556 | 13867390 | ID=Msa0800480-mRNA-1:five_prime_utr;Parent=Msa0800480-mRNA-1 |
| chr5_3 | CDS | 13867193 | 13867389 | 13867193 | ID=Msa0800480-mRNA-1:cds;Parent=Msa0800480-mRNA-1 |
| chr5_3 | CDS | 13867020 | 13867104 | 13867020 | ID=Msa0800480-mRNA-1:cds;Parent=Msa0800480-mRNA-1 |
| chr5_3 | CDS | 13865249 | 13865346 | 13865249 | ID=Msa0800480-mRNA-1:cds;Parent=Msa0800480-mRNA-1 |
| chr5_3 | CDS | 13865025 | 13865126 | 13865025 | ID=Msa0800480-mRNA-1:cds;Parent=Msa0800480-mRNA-1 |
| chr5_3 | CDS | 13864894 | 13864907 | 13864894 | ID=Msa0800480-mRNA-1:cds;Parent=Msa0800480-mRNA-1 |
| chr5_3 | CDS | 13864597 | 13864726 | 13864597 | ID=Msa0800480-mRNA-1:cds;Parent=Msa0800480-mRNA-1 |
| chr5_3 | CDS | 13864313 | 13864500 | 13864313 | ID=Msa0800480-mRNA-1:cds;Parent=Msa0800480-mRNA-1 |
| chr5_3 | CDS | 13864083 | 13864156 | 13864083 | ID=Msa0800480-mRNA-1:cds;Parent=Msa0800480-mRNA-1 |
| chr5_3 | three_prime_UTR | 13864067 | 13864082 | 13864067 | ID=Msa0800480-mRNA-1:three_prime_utr;Parent=Msa0800480-mRNA-1 |
| chr5_3 | three_prime_UTR | 13862920 | 13863240 | 13862920 | ID=Msa0800480-mRNA-1:three_prime_utr;Parent=Msa0800480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
