AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0169440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169440 MtrunA17_Chr1g0186181 95.090 611 28 1 1 611 1 609 0.0 1169
Msa0169440 MtrunA17_Chr1g0168411 44.097 288 108 9 228 512 22 259 5.40e-64 211
Msa0169440 MtrunA17_Chr1g0186211 72.289 83 22 1 276 358 6 87 2.37e-32 120
Msa0169440 MtrunA17_Chr4g0032351 32.778 180 99 6 422 600 665 823 6.73e-21 97.4
Msa0169440 MtrunA17_Chr4g0008861 36.441 118 72 2 481 598 765 879 4.18e-19 92.0
Msa0169440 MtrunA17_Chr8g0386851 30.435 368 203 16 266 604 327 670 1.72e-18 89.7
Msa0169440 MtrunA17_Chr5g0397401 29.565 345 169 10 266 596 269 553 3.43e-18 88.6
Msa0169440 MtrunA17_Chr2g0328721 34.848 132 80 3 482 610 755 883 1.01e-17 87.4
Msa0169440 MtrunA17_Chr7g0240931 36.290 124 68 3 473 595 688 801 5.53e-17 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169440 AT2G33360.1 35.788 584 299 17 62 609 56 599 5.80e-94 301
Msa0169440 AT2G33360.2 41.530 366 174 11 264 609 99 444 1.63e-81 264
Msa0169440 AT1G04490.9 34.527 391 183 14 225 604 67 395 5.08e-57 197
Msa0169440 AT1G04490.5 34.527 391 183 14 225 604 67 395 5.08e-57 197
Msa0169440 AT1G04490.6 34.527 391 183 14 225 604 67 395 5.08e-57 197
Msa0169440 AT1G04490.3 34.527 391 183 14 225 604 67 395 5.08e-57 197
Msa0169440 AT1G04490.7 34.527 391 183 14 225 604 67 395 5.08e-57 197
Msa0169440 AT1G04490.2 34.527 391 183 14 225 604 67 395 5.08e-57 197
Msa0169440 AT1G04490.1 34.527 391 183 14 225 604 67 395 5.08e-57 197
Msa0169440 AT1G04490.8 34.527 391 183 14 225 604 67 395 5.08e-57 197
Msa0169440 AT1G04490.4 34.494 316 148 12 225 529 67 334 3.19e-43 159
Msa0169440 AT1G63520.1 27.746 346 172 11 269 593 187 475 7.39e-26 112
Msa0169440 AT4G11450.1 30.471 361 192 15 274 596 285 624 1.14e-19 94.0
Msa0169440 AT5G01030.3 40.708 113 58 3 483 595 615 718 1.80e-18 90.1
Msa0169440 AT5G01030.1 40.708 113 58 3 483 595 615 718 1.80e-18 90.1
Msa0169440 AT5G01030.2 40.708 113 58 3 483 595 615 718 1.80e-18 90.1
Msa0169440 AT2G29510.1 36.296 135 69 5 483 608 667 793 1.42e-17 87.4
Msa0169440 AT2G37930.1 36.134 119 65 2 481 599 398 505 2.12e-17 86.3
Msa0169440 AT2G37930.3 36.134 119 65 2 481 599 426 533 2.34e-17 86.3
Msa0169440 AT2G37930.4 36.134 119 65 2 481 599 426 533 2.34e-17 86.3
Msa0169440 AT5G59020.1 36.207 116 70 3 481 594 614 727 3.48e-15 79.7
Msa0169440 AT2G37930.2 45.763 59 32 0 481 539 426 484 2.49e-12 70.1

Find 150 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTTATGTCCTGATTCTT+TGG 0.164405 1_4:+52682966 None:intergenic
AGTCTTTGTTGGAGATAATT+TGG 0.181839 1_4:+52686427 Msa0169440:three_prime_UTR
AGATGGAAAATGTAAGTTTA+TGG 0.213081 1_4:+52683891 Msa0169440:exon
ACTAGACGGACCACCATTTC+TGG 0.224898 1_4:-52685379 None:intergenic
TTACAAACACTTTCTCAATT+AGG 0.269396 1_4:-52686509 None:intergenic
CTCGAATAGTTGTCGAATAA+TGG 0.272428 1_4:+52684927 Msa0169440:CDS
AGTGTTTGTAACCATATTTA+TGG 0.273971 1_4:+52686521 Msa0169440:three_prime_UTR
CTGGAGAAGAGTGGACTTTA+GGG 0.278164 1_4:+52684356 Msa0169440:CDS
TGTGATTGAATAGCATTTAC+AGG 0.279426 1_4:-52684055 None:intergenic
TGTCATAAACTTCAAGGTTA+TGG 0.289180 1_4:-52684969 None:intergenic
CACCTGATGTTATCATATTT+AGG 0.294223 1_4:+52686305 Msa0169440:three_prime_UTR
ACTGGAGAAGAGTGGACTTT+AGG 0.303131 1_4:+52684355 Msa0169440:CDS
AGCTAAAGAAGTTGATTAAA+AGG 0.312395 1_4:+52684011 Msa0169440:CDS
CTGATTCCAGCAGGCCTTCA+TGG 0.314070 1_4:+52685345 Msa0169440:CDS
GGTCCATTCCTGTCCATAAA+AGG 0.314408 1_4:+52684599 Msa0169440:CDS
CATACAACTAGCCATAAATA+TGG 0.316473 1_4:-52686532 None:intergenic
TTAAAATTTCTCAACAAATC+TGG 0.318082 1_4:+52685249 Msa0169440:CDS
TTTCACTTTCACCGTTGTTT+TGG 0.331835 1_4:+52683066 Msa0169440:five_prime_UTR
AAAAGAGGGTCACTGGAAAA+AGG 0.339942 1_4:+52683919 Msa0169440:CDS
TTCAACTTCTACTTTATCTC+AGG 0.344781 1_4:+52684669 Msa0169440:CDS
GAACAAGGGGCTAAAGAAAA+AGG 0.347458 1_4:+52685020 Msa0169440:CDS
AAGACCATCTTCCTTGTAAT+AGG 0.349265 1_4:+52685202 Msa0169440:CDS
GTTTGTTGATTCAGATAGAA+AGG 0.355405 1_4:+52684435 Msa0169440:CDS
GCTACTTCTCTTCAACTTGT+TGG 0.359405 1_4:+52683333 Msa0169440:five_prime_UTR
ACGATATCAGCCCGGCCTTA+AGG 0.359469 1_4:+52686006 Msa0169440:CDS
GGACCACCATTTCTGGTTCT+AGG 0.365912 1_4:-52685372 None:intergenic
ATATATACCTGCTTAATTAC+CGG 0.367346 1_4:-52683411 None:intergenic
GACGATGATTTGCCGCTTGT+TGG 0.385963 1_4:+52684871 Msa0169440:CDS
ATGTGTTGTCATAAACTTCA+AGG 0.389477 1_4:-52684975 None:intergenic
CGGATTAATTAAGCTGAAGT+TGG 0.395373 1_4:-52683391 None:intergenic
TTCATCGTATAATCTCAAAA+AGG 0.399342 1_4:+52684543 Msa0169440:CDS
TCTTCGTCGCTGTCTCGAAT+TGG 0.399996 1_4:+52684174 Msa0169440:CDS
GTAGTTATAAGTTCTGAAAC+TGG 0.400801 1_4:+52684337 Msa0169440:CDS
TTTGCGCAAAATCATAATTA+CGG 0.401875 1_4:+52684577 Msa0169440:CDS
GTCACTGCGACTGCGGCGGT+TGG 0.402601 1_4:+52685427 Msa0169440:CDS
CACACATTAACCAAAGAATC+AGG 0.402985 1_4:-52682976 None:intergenic
ATGTTAGTGGACTTGACAAT+AGG 0.404627 1_4:+52684116 Msa0169440:CDS
GACAGCTCTTGTGCACTGTT+TGG 0.412328 1_4:-52686143 None:intergenic
TGGTTGACTTGTGCAGTGAT+AGG 0.412356 1_4:+52683948 Msa0169440:CDS
CAACTTCAGCTTAATTAATC+CGG 0.415209 1_4:+52683392 Msa0169440:five_prime_UTR
TTGCGCAAAATCATAATTAC+GGG 0.420948 1_4:+52684578 Msa0169440:CDS
ATATTACAGTAAGAGAACTA+TGG 0.422358 1_4:-52686201 None:intergenic
TCACTGCGACTGCGGCGGTT+GGG 0.423039 1_4:+52685428 Msa0169440:CDS
AGGACTAGTACAATGATGTT+TGG 0.424121 1_4:-52683002 None:intergenic
CTCTCGAAGTTTAACAGATC+TGG 0.427824 1_4:+52685087 Msa0169440:CDS
ATGAACATTTACCATCCTTA+AGG 0.428993 1_4:-52686021 None:intergenic
ATGGAAGCCATCTCAAAATT+CGG 0.429521 1_4:-52685171 None:intergenic
TCTGCGCTCACCATATGCTT+TGG 0.435520 1_4:-52684142 None:intergenic
CTCAACAGATGATAAGGCTT+TGG 0.437952 1_4:+52684792 Msa0169440:CDS
CGTCTAGTCTGATAGATAGA+TGG 0.438181 1_4:+52685394 Msa0169440:CDS
CTTTGATTGTCCCTCGGCCA+TGG 0.438982 1_4:+52684303 Msa0169440:CDS
GGCCCACCATGAAGGCCTGC+TGG 0.440167 1_4:-52685351 None:intergenic
ACGATGATTTGCCGCTTGTT+GGG 0.444880 1_4:+52684872 Msa0169440:CDS
GCATCTAATAAATCAATTTG+TGG 0.445579 1_4:-52685138 None:intergenic
TAGAATGTAAAAGTCTTTGT+TGG 0.446257 1_4:+52686416 Msa0169440:three_prime_UTR
CTTCTCTTCAACTTGTTGGT+GGG 0.446592 1_4:+52683337 Msa0169440:five_prime_UTR
GTCCCTCGGCCATGGAGACC+AGG 0.450997 1_4:+52684311 Msa0169440:CDS
TCCCCTGGTCTCCATGGCCG+AGG 0.451022 1_4:-52684314 None:intergenic
AATTAAGCTGAAGTTGGATC+TGG 0.455968 1_4:-52683385 None:intergenic
CCGGCCTATTACAAGGAAGA+TGG 0.462136 1_4:-52685206 None:intergenic
TTCCTAAATATGATAACATC+AGG 0.463573 1_4:-52686307 None:intergenic
CTGATAGATAGATGGAGATC+TGG 0.466242 1_4:+52685402 Msa0169440:CDS
GTCAGTTGATCTAGTTACTC+AGG 0.468769 1_4:+52685536 Msa0169440:CDS
TTAAGGATGGTAAATGTTCA+TGG 0.469525 1_4:+52686023 Msa0169440:CDS
AGTAGACTCAACAGATGATA+AGG 0.470322 1_4:+52684786 Msa0169440:CDS
CGACTGCGGCGGTTGGGACG+AGG 0.471254 1_4:+52685434 Msa0169440:CDS
ATAGAAAGGAGAGTTTGAAC+AGG 0.474728 1_4:+52684449 Msa0169440:CDS
ACTTCTCTTCAACTTGTTGG+TGG 0.477217 1_4:+52683336 Msa0169440:five_prime_UTR
AGATTAAGAGCAACAAACAT+AGG 0.478624 1_4:+52684241 Msa0169440:CDS
TTATCAGAAAGCTTGAATAC+AGG 0.482301 1_4:+52684268 Msa0169440:CDS
CAATAGGATTCCAAAGCATA+TGG 0.482636 1_4:+52684132 Msa0169440:CDS
CCACCTCTACTAGTTCTGAT+TGG 0.483900 1_4:+52684641 Msa0169440:CDS
CAAAGAATCAGGACATAAAG+TGG 0.495538 1_4:-52682965 None:intergenic
ATATGCAAAGTCCCACTCTT+CGG 0.496153 1_4:+52686120 Msa0169440:CDS
TCATATTTGTTAATGAGAAG+TGG 0.496945 1_4:+52686477 Msa0169440:three_prime_UTR
TTCCAGCAGGCCTTCATGGT+GGG 0.499228 1_4:+52685349 Msa0169440:CDS
AATTAATCCGGTAATTAAGC+AGG 0.501568 1_4:+52683404 Msa0169440:five_prime_UTR
ACTTGTTGGTGGGTTTCTTG+AGG 0.507277 1_4:+52683347 Msa0169440:five_prime_UTR
AGGTTTACGTGGCAAAATTG+AGG 0.509747 1_4:+52684758 Msa0169440:CDS
CATTTACCATCCTTAAGGCC+GGG 0.512909 1_4:-52686016 None:intergenic
TTTGTTGCTCTTAATCTCAA+AGG 0.513085 1_4:-52684235 None:intergenic
AACTACTCCCCTGGTCTCCA+TGG 0.514088 1_4:-52684320 None:intergenic
AGGATTCTAGTATTTGTTTG+CGG 0.516373 1_4:+52683156 Msa0169440:five_prime_UTR
GGTGGGCCTAGAACCAGAAA+TGG 0.516565 1_4:+52685366 Msa0169440:CDS
TAGGACGCGGTTGCGAATGA+AGG 0.521229 1_4:-52683022 None:intergenic
ACATTTACCATCCTTAAGGC+CGG 0.521286 1_4:-52686017 None:intergenic
AGTAGAGGTGGCGCTAGAAG+TGG 0.521940 1_4:-52684629 None:intergenic
AAAGACTGTAGTGCAGAAAG+AGG 0.522353 1_4:-52686074 None:intergenic
TGCACTGTTTGGCCGAAGAG+TGG 0.531993 1_4:-52686132 None:intergenic
TGAATTGTAGAGGTAGAAGA+TGG 0.535472 1_4:+52683874 Msa0169440:exon
TCTGGTGGTCACTGCGACTG+CGG 0.536572 1_4:+52685420 Msa0169440:CDS
CCATCTTCCTTGTAATAGGC+CGG 0.539744 1_4:+52685206 Msa0169440:CDS
CCCCTGGTCTCCATGGCCGA+GGG 0.542474 1_4:-52684313 None:intergenic
TGGTTCTAGGCCCACCATGA+AGG 0.543081 1_4:-52685359 None:intergenic
GTGCAGTAAAAGCAACTCAA+TGG 0.546874 1_4:+52684206 Msa0169440:CDS
ACTGTAGTGCAGAAAGAGGT+TGG 0.548905 1_4:-52686070 None:intergenic
GGTTGACTTGTGCAGTGATA+GGG 0.549117 1_4:+52683949 Msa0169440:CDS
GAAGATATACTTAAACCGCT+TGG 0.559049 1_4:-52684523 None:intergenic
TGCAACTCGAGAGAAGAGTC+TGG 0.560185 1_4:+52686227 Msa0169440:three_prime_UTR
TATCAGTTTCACTTAAACAA+GGG 0.562342 1_4:+52684823 Msa0169440:CDS
ATTCCAGCAGGCCTTCATGG+TGG 0.566953 1_4:+52685348 Msa0169440:CDS
AAAATAACAACCCTAAACAT+AGG 0.568010 1_4:-52686276 None:intergenic
AAGATGGTCTTTAACAACAA+TGG 0.573400 1_4:-52685190 None:intergenic
ATGAGCATTCTGATTCCAGC+AGG 0.575520 1_4:+52685336 Msa0169440:CDS
GACTGCGGCGGTTGGGACGA+GGG 0.575823 1_4:+52685435 Msa0169440:CDS
AGGGAATGATCCAATGTACA+TGG 0.577871 1_4:+52684689 Msa0169440:CDS
TCAACTTCTACTTTATCTCA+GGG 0.579262 1_4:+52684670 Msa0169440:CDS
TCATTAATCTTGAATTGTAG+AGG 0.580896 1_4:+52683864 Msa0169440:five_prime_UTR
AGAACTTATAACTACTCCCC+TGG 0.581477 1_4:-52684329 None:intergenic
TCCCTCGGCCATGGAGACCA+GGG 0.582391 1_4:+52684312 Msa0169440:CDS
ATTCTAGTATTTGTTTGCGG+TGG 0.590160 1_4:+52683159 Msa0169440:five_prime_UTR
GATTAAGAGCAACAAACATA+GGG 0.591898 1_4:+52684242 Msa0169440:CDS
AAATCAATTTGTGGATCCCA+CGG 0.593823 1_4:-52685129 None:intergenic
GAAAAGATCTAGCATAGTAG+AGG 0.598200 1_4:+52685479 Msa0169440:CDS
CTCATCACATGAAGAACAAG+GGG 0.606607 1_4:+52685007 Msa0169440:CDS
GTATCAGTTTCACTTAAACA+AGG 0.609853 1_4:+52684822 Msa0169440:CDS
CGTAGCTGAGAGTTGTCCGT+GGG 0.610134 1_4:+52685113 Msa0169440:CDS
TATCAGCCCGGCCTTAAGGA+TGG 0.610756 1_4:+52686010 Msa0169440:CDS
CCCTCGGCCATGGAGACCAG+GGG 0.612407 1_4:+52684313 Msa0169440:CDS
ATCCAATGTACATGGAAGCG+AGG 0.613426 1_4:+52684697 Msa0169440:CDS
GCACTGTTTGGCCGAAGAGT+GGG 0.617830 1_4:-52686131 None:intergenic
ACCCTCGCTTCCATGTACAT+TGG 0.618074 1_4:-52684699 None:intergenic
AACCATATTAACCAAAACAA+CGG 0.621718 1_4:-52683077 None:intergenic
GGGTTCGAACGATATCAGCC+CGG 0.623230 1_4:+52685998 Msa0169440:intron
TCCAATGTACATGGAAGCGA+GGG 0.623512 1_4:+52684698 Msa0169440:CDS
AATACTAGAATCCTACAACT+AGG 0.626257 1_4:-52683147 None:intergenic
ATAGATAGATGGAGATCTGG+TGG 0.626756 1_4:+52685405 Msa0169440:CDS
CCAATCAGAACTAGTAGAGG+TGG 0.627075 1_4:-52684641 None:intergenic
GGTGGTCACTGCGACTGCGG+CGG 0.629032 1_4:+52685423 Msa0169440:CDS
CATCTATCTATCAGACTAGA+CGG 0.630501 1_4:-52685393 None:intergenic
GTGGACTTTAGGGACAGTCA+TGG 0.630587 1_4:+52684366 Msa0169440:CDS
TTCTCATCACATGAAGAACA+AGG 0.630955 1_4:+52685005 Msa0169440:CDS
ATGAAGACAAGAACATGGGT+AGG 0.631058 1_4:-52683041 None:intergenic
ACAGTCTTTCTCTATAGCTG+TGG 0.633106 1_4:+52686088 Msa0169440:CDS
CTAAATATGATAACATCAGG+TGG 0.634351 1_4:-52686304 None:intergenic
CATCCAATCAGAACTAGTAG+AGG 0.635289 1_4:-52684644 None:intergenic
AAACAATGAAGACAAGAACA+TGG 0.637787 1_4:-52683046 None:intergenic
GGGCCTAGAACCAGAAATGG+TGG 0.641403 1_4:+52685369 Msa0169440:CDS
CTGTCTCAAGTAGATACGAA+AGG 0.644059 1_4:+52685504 Msa0169440:CDS
GTTATGGAATAATGTGAACT+CGG 0.647864 1_4:-52684953 None:intergenic
CCGTAGCTGAGAGTTGTCCG+TGG 0.650640 1_4:+52685112 Msa0169440:CDS
CCACGGACAACTCTCAGCTA+CGG 0.651291 1_4:-52685112 None:intergenic
GTTCTGAAACTGGAGAAGAG+TGG 0.658656 1_4:+52684347 Msa0169440:CDS
AGGGCAATGACTTCGAGACA+CGG 0.660165 1_4:+52683835 Msa0169440:intron
AACAATGAAGACAAGAACAT+GGG 0.665946 1_4:-52683045 None:intergenic
TCTCATCACATGAAGAACAA+GGG 0.672541 1_4:+52685006 Msa0169440:CDS
GAAGCCATCTCAAAATTCGG+AGG 0.676216 1_4:-52685168 None:intergenic
ACAAGAACATGGGTAGGACG+CGG 0.687379 1_4:-52683035 None:intergenic
ACAGCTTTCAGAAGGCGATG+CGG 0.697212 1_4:-52685283 None:intergenic
AGGATGGTAAATGTTCATGG+CGG 0.792410 1_4:+52686026 Msa0169440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACAATTTTTCTTATAAAAA+GGG - chr1_4:52683119-52683138 None:intergenic 10.0%
!!! ATACAATTTTTCTTATAAAA+AGG - chr1_4:52683120-52683139 None:intergenic 10.0%
!!! TTATAAGAAAAATTGTATTT+TGG + chr1_4:52683122-52683141 Msa0169440:five_prime_UTR 10.0%
!!! GAATTTGTTTAATAATTTAT+TGG + chr1_4:52683504-52683523 Msa0169440:intron 10.0%
!!! TAAATATATTTTGTTGTTTT+AGG + chr1_4:52683713-52683732 Msa0169440:intron 10.0%
!! ATTACATTAAAATTAAAATC+TGG - chr1_4:52685824-52685843 None:intergenic 10.0%
!! AAGATTCTTTACAATAATTA+AGG - chr1_4:52683663-52683682 None:intergenic 15.0%
!! TAATCTCATTATATTATAGT+TGG + chr1_4:52685614-52685633 Msa0169440:intron 15.0%
!!! TGATTTATGTTTTTAGAACA+TGG + chr1_4:52683571-52683590 Msa0169440:intron 20.0%
!!! ATATTTTGTTGTTTTAGGAT+AGG + chr1_4:52683718-52683737 Msa0169440:intron 20.0%
!! TATGCAAAATAATGAAGAAA+AGG - chr1_4:52683765-52683784 None:intergenic 20.0%
!!! TAAAGTGTATTTTTTCTTGT+AGG + chr1_4:52683815-52683834 Msa0169440:intron 20.0%
!!! AAAGTGTATTTTTTCTTGTA+GGG + chr1_4:52683816-52683835 Msa0169440:intron 20.0%
!!! ATTGATATGCTATGATTTTA+TGG + chr1_4:52684495-52684514 Msa0169440:CDS 20.0%
!! TTAAAATTTCTCAACAAATC+TGG + chr1_4:52685249-52685268 Msa0169440:CDS 20.0%
!! ACATTAAAATTAAAATCTGG+TGG - chr1_4:52685821-52685840 None:intergenic 20.0%
!! AATTACTTTCTATAACTTTC+AGG + chr1_4:52685977-52685996 Msa0169440:intron 20.0%
!! ATTACTTTCTATAACTTTCA+GGG + chr1_4:52685978-52685997 Msa0169440:intron 20.0%
! AACCATATTAACCAAAACAA+CGG - chr1_4:52683080-52683099 None:intergenic 25.0%
!!! TTTTTTAGTACAAGGAAGAA+AGG - chr1_4:52683270-52683289 None:intergenic 25.0%
!!! AAATGAGCTTTTTTAGTACA+AGG - chr1_4:52683278-52683297 None:intergenic 25.0%
!!! CTAAAAAAGCTCATTTTTTG+AGG + chr1_4:52683282-52683301 Msa0169440:five_prime_UTR 25.0%
! ATATATACCTGCTTAATTAC+CGG - chr1_4:52683414-52683433 None:intergenic 25.0%
! GGATTAAGGTTGTAAATTAT+GGG + chr1_4:52683610-52683629 Msa0169440:intron 25.0%
!! TTTGCATACAATTTTCTTGT+TGG + chr1_4:52683777-52683796 Msa0169440:intron 25.0%
! TCATTAATCTTGAATTGTAG+AGG + chr1_4:52683864-52683883 Msa0169440:five_prime_UTR 25.0%
! AGATGGAAAATGTAAGTTTA+TGG + chr1_4:52683891-52683910 Msa0169440:exon 25.0%
! AAGTTTATGGATTCAAAAAG+AGG + chr1_4:52683904-52683923 Msa0169440:CDS 25.0%
! AGTTTATGGATTCAAAAAGA+GGG + chr1_4:52683905-52683924 Msa0169440:CDS 25.0%
!! AGCTAAAGAAGTTGATTAAA+AGG + chr1_4:52684011-52684030 Msa0169440:CDS 25.0%
!! AATCAGTAAAGTTTTCTTCA+AGG + chr1_4:52684078-52684097 Msa0169440:CDS 25.0%
!! ATCAGTAAAGTTTTCTTCAA+GGG + chr1_4:52684079-52684098 Msa0169440:CDS 25.0%
!!! TTATTTTTCAGACATGTTAG+TGG + chr1_4:52684103-52684122 Msa0169440:CDS 25.0%
! TTCATCGTATAATCTCAAAA+AGG + chr1_4:52684543-52684562 Msa0169440:CDS 25.0%
!! TAATTATGATTTTGCGCAAA+CGG - chr1_4:52684577-52684596 None:intergenic 25.0%
! TTTGCGCAAAATCATAATTA+CGG + chr1_4:52684577-52684596 Msa0169440:CDS 25.0%
! TATCAGTTTCACTTAAACAA+GGG + chr1_4:52684823-52684842 Msa0169440:CDS 25.0%
! GCATCTAATAAATCAATTTG+TGG - chr1_4:52685141-52685160 None:intergenic 25.0%
! TTATATTATAGTTGGATCTG+AGG + chr1_4:52685622-52685641 Msa0169440:intron 25.0%
! ATGTAGAAAATGTATCATTG+AGG - chr1_4:52685720-52685739 None:intergenic 25.0%
! TTAAAATTAAAATCTGGTGG+TGG - chr1_4:52685818-52685837 None:intergenic 25.0%
! ATATTACAGTAAGAGAACTA+TGG - chr1_4:52686204-52686223 None:intergenic 25.0%
! AAAATAACAACCCTAAACAT+AGG - chr1_4:52686279-52686298 None:intergenic 25.0%
! TTCCTAAATATGATAACATC+AGG - chr1_4:52686310-52686329 None:intergenic 25.0%
! AAAAAGAATGAGGAAAAAGA+TGG - chr1_4:52686384-52686403 None:intergenic 25.0%
! TAGAATGTAAAAGTCTTTGT+TGG + chr1_4:52686416-52686435 Msa0169440:three_prime_UTR 25.0%
!! TCATATTTGTTAATGAGAAG+TGG + chr1_4:52686477-52686496 Msa0169440:three_prime_UTR 25.0%
! TTACAAACACTTTCTCAATT+AGG - chr1_4:52686512-52686531 None:intergenic 25.0%
! AGTGTTTGTAACCATATTTA+TGG + chr1_4:52686521-52686540 Msa0169440:three_prime_UTR 25.0%
AACAATGAAGACAAGAACAT+GGG - chr1_4:52683048-52683067 None:intergenic 30.0%
AAACAATGAAGACAAGAACA+TGG - chr1_4:52683049-52683068 None:intergenic 30.0%
AATACTAGAATCCTACAACT+AGG - chr1_4:52683150-52683169 None:intergenic 30.0%
AGGATTCTAGTATTTGTTTG+CGG + chr1_4:52683156-52683175 Msa0169440:five_prime_UTR 30.0%
GAAAACAAAAATGAGCACAT+GGG - chr1_4:52683238-52683257 None:intergenic 30.0%
AGAAAACAAAAATGAGCACA+TGG - chr1_4:52683239-52683258 None:intergenic 30.0%
CAACTTCAGCTTAATTAATC+CGG + chr1_4:52683392-52683411 Msa0169440:five_prime_UTR 30.0%
AATTAATCCGGTAATTAAGC+AGG + chr1_4:52683404-52683423 Msa0169440:five_prime_UTR 30.0%
!! TTTGTATGGATTAGTCTGTT+TGG + chr1_4:52683546-52683565 Msa0169440:intron 30.0%
GGGATTAAGGTTGTAAATTA+TGG + chr1_4:52683609-52683628 Msa0169440:intron 30.0%
TGTAAATTATGGGATGATTG+AGG + chr1_4:52683620-52683639 Msa0169440:intron 30.0%
! TGTAAAGAATCTTTGCCTTT+TGG + chr1_4:52683670-52683689 Msa0169440:intron 30.0%
CTCTATTATTTGTGACCAAA+AGG - chr1_4:52683688-52683707 None:intergenic 30.0%
GAAGAAAAGGTGAAAAACAA+TGG - chr1_4:52683752-52683771 None:intergenic 30.0%
TGTGATTGAATAGCATTTAC+AGG - chr1_4:52684058-52684077 None:intergenic 30.0%
TTTGTTGCTCTTAATCTCAA+AGG - chr1_4:52684238-52684257 None:intergenic 30.0%
AGATTAAGAGCAACAAACAT+AGG + chr1_4:52684241-52684260 Msa0169440:CDS 30.0%
GATTAAGAGCAACAAACATA+GGG + chr1_4:52684242-52684261 Msa0169440:CDS 30.0%
TTATCAGAAAGCTTGAATAC+AGG + chr1_4:52684268-52684287 Msa0169440:CDS 30.0%
!! GTAGTTATAAGTTCTGAAAC+TGG + chr1_4:52684337-52684356 Msa0169440:CDS 30.0%
!! GTTTGTTGATTCAGATAGAA+AGG + chr1_4:52684435-52684454 Msa0169440:CDS 30.0%
TTGCGCAAAATCATAATTAC+GGG + chr1_4:52684578-52684597 Msa0169440:CDS 30.0%
TTCAACTTCTACTTTATCTC+AGG + chr1_4:52684669-52684688 Msa0169440:CDS 30.0%
TCAACTTCTACTTTATCTCA+GGG + chr1_4:52684670-52684689 Msa0169440:CDS 30.0%
TCTGCGGAAAAAATAAAATG+AGG - chr1_4:52684727-52684746 None:intergenic 30.0%
GTATCAGTTTCACTTAAACA+AGG + chr1_4:52684822-52684841 Msa0169440:CDS 30.0%
GTTATGGAATAATGTGAACT+CGG - chr1_4:52684956-52684975 None:intergenic 30.0%
TGTCATAAACTTCAAGGTTA+TGG - chr1_4:52684972-52684991 None:intergenic 30.0%
ATGTGTTGTCATAAACTTCA+AGG - chr1_4:52684978-52684997 None:intergenic 30.0%
AAGATGGTCTTTAACAACAA+TGG - chr1_4:52685193-52685212 None:intergenic 30.0%
!! TTTTGATTACAGCTTTCAGA+AGG - chr1_4:52685294-52685313 None:intergenic 30.0%
! AGAAGCACAATACAAAAGAA+AGG - chr1_4:52685697-52685716 None:intergenic 30.0%
CTGTCAAATATAACACATTG+TGG - chr1_4:52685854-52685873 None:intergenic 30.0%
ATGAACATTTACCATCCTTA+AGG - chr1_4:52686024-52686043 None:intergenic 30.0%
TTAAGGATGGTAAATGTTCA+TGG + chr1_4:52686023-52686042 Msa0169440:CDS 30.0%
!!! CTGGTTTTTTTATGTGATTC+AGG + chr1_4:52686246-52686265 Msa0169440:three_prime_UTR 30.0%
!!! AGGTTTTGTTCCTATGTTTA+GGG + chr1_4:52686266-52686285 Msa0169440:three_prime_UTR 30.0%
CTAAATATGATAACATCAGG+TGG - chr1_4:52686307-52686326 None:intergenic 30.0%
CACCTGATGTTATCATATTT+AGG + chr1_4:52686305-52686324 Msa0169440:three_prime_UTR 30.0%
CTCTTCAACAAAAAAGAATG+AGG - chr1_4:52686394-52686413 None:intergenic 30.0%
!!! CTCATTCTTTTTTGTTGAAG+AGG + chr1_4:52686392-52686411 Msa0169440:three_prime_UTR 30.0%
AGTCTTTGTTGGAGATAATT+TGG + chr1_4:52686427-52686446 Msa0169440:three_prime_UTR 30.0%
CATACAACTAGCCATAAATA+TGG - chr1_4:52686535-52686554 None:intergenic 30.0%
CACACATTAACCAAAGAATC+AGG - chr1_4:52682979-52682998 None:intergenic 35.0%
! AGGACTAGTACAATGATGTT+TGG - chr1_4:52683005-52683024 None:intergenic 35.0%
! TTTCACTTTCACCGTTGTTT+TGG + chr1_4:52683066-52683085 Msa0169440:five_prime_UTR 35.0%
!!! CACCGTTGTTTTGGTTAATA+TGG + chr1_4:52683075-52683094 Msa0169440:five_prime_UTR 35.0%
!!! GTATTTTGGAACCTAGTTGT+AGG + chr1_4:52683136-52683155 Msa0169440:five_prime_UTR 35.0%
ATTCTAGTATTTGTTTGCGG+TGG + chr1_4:52683159-52683178 Msa0169440:five_prime_UTR 35.0%
AATTAAGCTGAAGTTGGATC+TGG - chr1_4:52683388-52683407 None:intergenic 35.0%
CGGATTAATTAAGCTGAAGT+TGG - chr1_4:52683394-52683413 None:intergenic 35.0%
!! TTTCTAGCCTTTGGTTTGTA+TGG + chr1_4:52683532-52683551 Msa0169440:intron 35.0%
GACTAATCCATACAAACCAA+AGG - chr1_4:52683542-52683561 None:intergenic 35.0%
!! ACATGGTTGACTTTGTCTTT+TGG + chr1_4:52683588-52683607 Msa0169440:intron 35.0%
!! CATGGTTGACTTTGTCTTTT+GGG + chr1_4:52683589-52683608 Msa0169440:intron 35.0%
!!! GACTTTGTCTTTTGGGATTA+AGG + chr1_4:52683596-52683615 Msa0169440:intron 35.0%
TGAATTGTAGAGGTAGAAGA+TGG + chr1_4:52683874-52683893 Msa0169440:exon 35.0%
!! ATGTTAGTGGACTTGACAAT+AGG + chr1_4:52684116-52684135 Msa0169440:CDS 35.0%
CAATAGGATTCCAAAGCATA+TGG + chr1_4:52684132-52684151 Msa0169440:CDS 35.0%
!!! ATTGAGTTGCTTTTACTGCA+CGG - chr1_4:52684207-52684226 None:intergenic 35.0%
! TTTTGTCTTTGATTGTCCCT+CGG + chr1_4:52684297-52684316 Msa0169440:CDS 35.0%
ATAGAAAGGAGAGTTTGAAC+AGG + chr1_4:52684449-52684468 Msa0169440:CDS 35.0%
! ATGAACTTTTCTGATGCTGA+GGG + chr1_4:52684472-52684491 Msa0169440:CDS 35.0%
GAAGATATACTTAAACCGCT+TGG - chr1_4:52684526-52684545 None:intergenic 35.0%
AGTAGACTCAACAGATGATA+AGG + chr1_4:52684786-52684805 Msa0169440:CDS 35.0%
! ACATTCATTTTCCCAACAAG+CGG - chr1_4:52684886-52684905 None:intergenic 35.0%
CTCGAATAGTTGTCGAATAA+TGG + chr1_4:52684927-52684946 Msa0169440:CDS 35.0%
TTCTCATCACATGAAGAACA+AGG + chr1_4:52685005-52685024 Msa0169440:CDS 35.0%
TCTCATCACATGAAGAACAA+GGG + chr1_4:52685006-52685025 Msa0169440:CDS 35.0%
!!! TCTGTGTTTTGATGAAGGAT+TGG - chr1_4:52685064-52685083 None:intergenic 35.0%
!!! AGTGTTCTGTGTTTTGATGA+AGG - chr1_4:52685069-52685088 None:intergenic 35.0%
AAATCAATTTGTGGATCCCA+CGG - chr1_4:52685132-52685151 None:intergenic 35.0%
ATGGAAGCCATCTCAAAATT+CGG - chr1_4:52685174-52685193 None:intergenic 35.0%
AAGACCATCTTCCTTGTAAT+AGG + chr1_4:52685202-52685221 Msa0169440:CDS 35.0%
!!! ATTTTTTCCGGCCTATTACA+AGG - chr1_4:52685216-52685235 None:intergenic 35.0%
TGTAATAGGCCGGAAAAAAT+AGG + chr1_4:52685216-52685235 Msa0169440:CDS 35.0%
CATCTATCTATCAGACTAGA+CGG - chr1_4:52685396-52685415 None:intergenic 35.0%
GAAAAGATCTAGCATAGTAG+AGG + chr1_4:52685479-52685498 Msa0169440:CDS 35.0%
TGGTCTATAGTAGCGAAAAT+GGG + chr1_4:52685761-52685780 Msa0169440:intron 35.0%
!!! CAGGTTTTGTTCCTATGTTT+AGG + chr1_4:52686265-52686284 Msa0169440:three_prime_UTR 35.0%
ATGAAGACAAGAACATGGGT+AGG - chr1_4:52683044-52683063 None:intergenic 40.0%
ACAAAAATGAGCACATGGGA+GGG - chr1_4:52683234-52683253 None:intergenic 40.0%
AACAAAAATGAGCACATGGG+AGG - chr1_4:52683235-52683254 None:intergenic 40.0%
GCTACTTCTCTTCAACTTGT+TGG + chr1_4:52683333-52683352 Msa0169440:five_prime_UTR 40.0%
!! ACTTCTCTTCAACTTGTTGG+TGG + chr1_4:52683336-52683355 Msa0169440:five_prime_UTR 40.0%
!! CTTCTCTTCAACTTGTTGGT+GGG + chr1_4:52683337-52683356 Msa0169440:five_prime_UTR 40.0%
! TTGGAGAACTTTCTAGCCTT+TGG + chr1_4:52683523-52683542 Msa0169440:intron 40.0%
AAAAGAGGGTCACTGGAAAA+AGG + chr1_4:52683919-52683938 Msa0169440:CDS 40.0%
TCACTGGAAAAAGGATTCGT+TGG + chr1_4:52683928-52683947 Msa0169440:CDS 40.0%
GTGCAGTAAAAGCAACTCAA+TGG + chr1_4:52684206-52684225 Msa0169440:CDS 40.0%
AGAACTTATAACTACTCCCC+TGG - chr1_4:52684332-52684351 None:intergenic 40.0%
! GATGAACTTTTCTGATGCTG+AGG + chr1_4:52684471-52684490 Msa0169440:CDS 40.0%
! GATTTTATGGACTCTCCAAG+CGG + chr1_4:52684508-52684527 Msa0169440:CDS 40.0%
! AAGCCTTTTATGGACAGGAA+TGG - chr1_4:52684605-52684624 None:intergenic 40.0%
! AAGTGGAAGCAAGCCTTTTA+TGG - chr1_4:52684615-52684634 None:intergenic 40.0%
CATCCAATCAGAACTAGTAG+AGG - chr1_4:52684647-52684666 None:intergenic 40.0%
AGGGAATGATCCAATGTACA+TGG + chr1_4:52684689-52684708 Msa0169440:CDS 40.0%
! AACCTCTTTTTGATCGTCTG+CGG - chr1_4:52684743-52684762 None:intergenic 40.0%
CGATCAAAAAGAGGTTTACG+TGG + chr1_4:52684747-52684766 Msa0169440:CDS 40.0%
AGGTTTACGTGGCAAAATTG+AGG + chr1_4:52684758-52684777 Msa0169440:CDS 40.0%
CTCAACAGATGATAAGGCTT+TGG + chr1_4:52684792-52684811 Msa0169440:CDS 40.0%
CTCATCACATGAAGAACAAG+GGG + chr1_4:52685007-52685026 Msa0169440:CDS 40.0%
GAACAAGGGGCTAAAGAAAA+AGG + chr1_4:52685020-52685039 Msa0169440:CDS 40.0%
CTCTCGAAGTTTAACAGATC+TGG + chr1_4:52685087-52685106 Msa0169440:CDS 40.0%
!! TGTTCCTCCGAATTTTGAGA+TGG + chr1_4:52685164-52685183 Msa0169440:CDS 40.0%
AATAGGCCGGAAAAAATAGG+AGG + chr1_4:52685219-52685238 Msa0169440:CDS 40.0%
CGTCTAGTCTGATAGATAGA+TGG + chr1_4:52685394-52685413 Msa0169440:CDS 40.0%
CTGATAGATAGATGGAGATC+TGG + chr1_4:52685402-52685421 Msa0169440:CDS 40.0%
ATAGATAGATGGAGATCTGG+TGG + chr1_4:52685405-52685424 Msa0169440:CDS 40.0%
!!! CTTTTCTGAAGTACAGTCAG+AGG - chr1_4:52685465-52685484 None:intergenic 40.0%
CTGTCTCAAGTAGATACGAA+AGG + chr1_4:52685504-52685523 Msa0169440:CDS 40.0%
GTCAGTTGATCTAGTTACTC+AGG + chr1_4:52685536-52685555 Msa0169440:CDS 40.0%
GTGGTCTATAGTAGCGAAAA+TGG + chr1_4:52685760-52685779 Msa0169440:intron 40.0%
ACATTTACCATCCTTAAGGC+CGG - chr1_4:52686020-52686039 None:intergenic 40.0%
AGGATGGTAAATGTTCATGG+CGG + chr1_4:52686026-52686045 Msa0169440:CDS 40.0%
AAAGACTGTAGTGCAGAAAG+AGG - chr1_4:52686077-52686096 None:intergenic 40.0%
ACAGTCTTTCTCTATAGCTG+TGG + chr1_4:52686088-52686107 Msa0169440:CDS 40.0%
ATATGCAAAGTCCCACTCTT+CGG + chr1_4:52686120-52686139 Msa0169440:CDS 40.0%
!! ACTTGTTGGTGGGTTTCTTG+AGG + chr1_4:52683347-52683366 Msa0169440:five_prime_UTR 45.0%
GGATTCAAAAAGAGGGTCAC+TGG + chr1_4:52683912-52683931 Msa0169440:CDS 45.0%
!! TGGTTGACTTGTGCAGTGAT+AGG + chr1_4:52683948-52683967 Msa0169440:CDS 45.0%
!! GGTTGACTTGTGCAGTGATA+GGG + chr1_4:52683949-52683968 Msa0169440:CDS 45.0%
!! GTTCTGAAACTGGAGAAGAG+TGG + chr1_4:52684347-52684366 Msa0169440:CDS 45.0%
! ACTGGAGAAGAGTGGACTTT+AGG + chr1_4:52684355-52684374 Msa0169440:CDS 45.0%
! CTGGAGAAGAGTGGACTTTA+GGG + chr1_4:52684356-52684375 Msa0169440:CDS 45.0%
GGTCCATTCCTGTCCATAAA+AGG + chr1_4:52684599-52684618 Msa0169440:CDS 45.0%
! GAAGCAAGCCTTTTATGGAC+AGG - chr1_4:52684610-52684629 None:intergenic 45.0%
CCAATCAGAACTAGTAGAGG+TGG - chr1_4:52684644-52684663 None:intergenic 45.0%
!! CCACCTCTACTAGTTCTGAT+TGG + chr1_4:52684641-52684660 Msa0169440:CDS 45.0%
ATCCAATGTACATGGAAGCG+AGG + chr1_4:52684697-52684716 Msa0169440:CDS 45.0%
TCCAATGTACATGGAAGCGA+GGG + chr1_4:52684698-52684717 Msa0169440:CDS 45.0%
TTCCGCAGACGATCAAAAAG+AGG + chr1_4:52684738-52684757 Msa0169440:CDS 45.0%
! ACGATGATTTGCCGCTTGTT+GGG + chr1_4:52684872-52684891 Msa0169440:CDS 45.0%
GAAGCCATCTCAAAATTCGG+AGG - chr1_4:52685171-52685190 None:intergenic 45.0%
CCATCTTCCTTGTAATAGGC+CGG + chr1_4:52685206-52685225 Msa0169440:CDS 45.0%
GCCGGAAAAAATAGGAGGTT+GGG + chr1_4:52685224-52685243 Msa0169440:CDS 45.0%
!!! CCCCAACCTCCTATTTTTTC+CGG - chr1_4:52685228-52685247 None:intergenic 45.0%
CCGGAAAAAATAGGAGGTTG+GGG + chr1_4:52685225-52685244 Msa0169440:CDS 45.0%
ATGAGCATTCTGATTCCAGC+AGG + chr1_4:52685336-52685355 Msa0169440:CDS 45.0%
ATAGACCTCCTTCTGTCAGA+AGG + chr1_4:52685738-52685757 Msa0169440:intron 45.0%
ATAGACCACCTTCTGACAGA+AGG - chr1_4:52685749-52685768 None:intergenic 45.0%
CATTTACCATCCTTAAGGCC+GGG - chr1_4:52686019-52686038 None:intergenic 45.0%
ACTGTAGTGCAGAAAGAGGT+TGG - chr1_4:52686073-52686092 None:intergenic 45.0%
ACAAGAACATGGGTAGGACG+CGG - chr1_4:52683038-52683057 None:intergenic 50.0%
AGGGCAATGACTTCGAGACA+CGG + chr1_4:52683835-52683854 Msa0169440:intron 50.0%
TCTGCGCTCACCATATGCTT+TGG - chr1_4:52684145-52684164 None:intergenic 50.0%
TCTTCGTCGCTGTCTCGAAT+TGG + chr1_4:52684174-52684193 Msa0169440:CDS 50.0%
! GTGGACTTTAGGGACAGTCA+TGG + chr1_4:52684366-52684385 Msa0169440:CDS 50.0%
ACCCTCGCTTCCATGTACAT+TGG - chr1_4:52684702-52684721 None:intergenic 50.0%
! GACGATGATTTGCCGCTTGT+TGG + chr1_4:52684871-52684890 Msa0169440:CDS 50.0%
CCGGCCTATTACAAGGAAGA+TGG - chr1_4:52685209-52685228 None:intergenic 50.0%
GGCCGGAAAAAATAGGAGGT+TGG + chr1_4:52685223-52685242 Msa0169440:CDS 50.0%
ACAGCTTTCAGAAGGCGATG+CGG - chr1_4:52685286-52685305 None:intergenic 50.0%
!! GGACCACCATTTCTGGTTCT+AGG - chr1_4:52685375-52685394 None:intergenic 50.0%
ACTAGACGGACCACCATTTC+TGG - chr1_4:52685382-52685401 None:intergenic 50.0%
GACAGCTCTTGTGCACTGTT+TGG - chr1_4:52686146-52686165 None:intergenic 50.0%
TGCAACTCGAGAGAAGAGTC+TGG + chr1_4:52686227-52686246 Msa0169440:three_prime_UTR 50.0%
TAGGACGCGGTTGCGAATGA+AGG - chr1_4:52683025-52683044 None:intergenic 55.0%
CTTTGATTGTCCCTCGGCCA+TGG + chr1_4:52684303-52684322 Msa0169440:CDS 55.0%
AACTACTCCCCTGGTCTCCA+TGG - chr1_4:52684323-52684342 None:intergenic 55.0%
AGTAGAGGTGGCGCTAGAAG+TGG - chr1_4:52684632-52684651 None:intergenic 55.0%
CCACGGACAACTCTCAGCTA+CGG - chr1_4:52685115-52685134 None:intergenic 55.0%
CGTAGCTGAGAGTTGTCCGT+GGG + chr1_4:52685113-52685132 Msa0169440:CDS 55.0%
CTGATTCCAGCAGGCCTTCA+TGG + chr1_4:52685345-52685364 Msa0169440:CDS 55.0%
ATTCCAGCAGGCCTTCATGG+TGG + chr1_4:52685348-52685367 Msa0169440:CDS 55.0%
TTCCAGCAGGCCTTCATGGT+GGG + chr1_4:52685349-52685368 Msa0169440:CDS 55.0%
!! TGGTTCTAGGCCCACCATGA+AGG - chr1_4:52685362-52685381 None:intergenic 55.0%
GGTGGGCCTAGAACCAGAAA+TGG + chr1_4:52685366-52685385 Msa0169440:CDS 55.0%
GGGCCTAGAACCAGAAATGG+TGG + chr1_4:52685369-52685388 Msa0169440:CDS 55.0%
GACCTCCTTCTGTCAGAAGG+TGG + chr1_4:52685741-52685760 Msa0169440:intron 55.0%
GACCACCTTCTGACAGAAGG+AGG - chr1_4:52685746-52685765 None:intergenic 55.0%
GGGTTCGAACGATATCAGCC+CGG + chr1_4:52685998-52686017 Msa0169440:intron 55.0%
ACGATATCAGCCCGGCCTTA+AGG + chr1_4:52686006-52686025 Msa0169440:CDS 55.0%
TATCAGCCCGGCCTTAAGGA+TGG + chr1_4:52686010-52686029 Msa0169440:CDS 55.0%
GCACTGTTTGGCCGAAGAGT+GGG - chr1_4:52686134-52686153 None:intergenic 55.0%
TGCACTGTTTGGCCGAAGAG+TGG - chr1_4:52686135-52686154 None:intergenic 55.0%
CCGTAGCTGAGAGTTGTCCG+TGG + chr1_4:52685112-52685131 Msa0169440:CDS 60.0%
TCTGGTGGTCACTGCGACTG+CGG + chr1_4:52685420-52685439 Msa0169440:CDS 60.0%
TCCCTCGGCCATGGAGACCA+GGG + chr1_4:52684312-52684331 Msa0169440:CDS 65.0%
TCACTGCGACTGCGGCGGTT+GGG + chr1_4:52685428-52685447 Msa0169440:CDS 65.0%
GTCCCTCGGCCATGGAGACC+AGG + chr1_4:52684311-52684330 Msa0169440:CDS 70.0%
CCCCTGGTCTCCATGGCCGA+GGG - chr1_4:52684316-52684335 None:intergenic 70.0%
CCCTCGGCCATGGAGACCAG+GGG + chr1_4:52684313-52684332 Msa0169440:CDS 70.0%
TCCCCTGGTCTCCATGGCCG+AGG - chr1_4:52684317-52684336 None:intergenic 70.0%
GGCCCACCATGAAGGCCTGC+TGG - chr1_4:52685354-52685373 None:intergenic 70.0%
GGTGGTCACTGCGACTGCGG+CGG + chr1_4:52685423-52685442 Msa0169440:CDS 70.0%
GTCACTGCGACTGCGGCGGT+TGG + chr1_4:52685427-52685446 Msa0169440:CDS 70.0%
GACTGCGGCGGTTGGGACGA+GGG + chr1_4:52685435-52685454 Msa0169440:CDS 70.0%
CGACTGCGGCGGTTGGGACG+AGG + chr1_4:52685434-52685453 Msa0169440:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 52682968 52686558 52682968 ID=Msa0169440;Name=Msa0169440
chr1_4 mRNA 52682968 52686558 52682968 ID=Msa0169440-mRNA-1;Parent=Msa0169440;Name=Msa0169440-mRNA-1;_AED=0.25;_eAED=0.25;_QI=514|1|1|1|0.5|0.33|3|389|611
chr1_4 exon 52682968 52683425 52682968 ID=Msa0169440-mRNA-1:exon:15684;Parent=Msa0169440-mRNA-1
chr1_4 exon 52683837 52685557 52683837 ID=Msa0169440-mRNA-1:exon:15685;Parent=Msa0169440-mRNA-1
chr1_4 exon 52685999 52686558 52685999 ID=Msa0169440-mRNA-1:exon:15686;Parent=Msa0169440-mRNA-1
chr1_4 five_prime_UTR 52682968 52683425 52682968 ID=Msa0169440-mRNA-1:five_prime_utr;Parent=Msa0169440-mRNA-1
chr1_4 five_prime_UTR 52683837 52683892 52683837 ID=Msa0169440-mRNA-1:five_prime_utr;Parent=Msa0169440-mRNA-1
chr1_4 CDS 52683893 52685557 52683893 ID=Msa0169440-mRNA-1:cds;Parent=Msa0169440-mRNA-1
chr1_4 CDS 52685999 52686169 52685999 ID=Msa0169440-mRNA-1:cds;Parent=Msa0169440-mRNA-1
chr1_4 three_prime_UTR 52686170 52686558 52686170 ID=Msa0169440-mRNA-1:three_prime_utr;Parent=Msa0169440-mRNA-1
Gene Sequence

>Msa0169440

ATGGAAAATGTAAGTTTATGGATTCAAAAAGAGGGTCACTGGAAAAAGGATTCGTTGGTTGACTTGTGCAGTGATAGGGAAGAATTATCTGCTGAACATGAAGATTCTTCTAAGTCTCAGCTAAAGAAGTTGATTAAAAGGTCAAACTCTCATTCATCAATACCTGTAAATGCTATTCAATCACAAATCAGTAAAGTTTTCTTCAAGGGTTTATTTTTCAGACATGTTAGTGGACTTGACAATAGGATTCCAAAGCATATGGTGAGCGCAGACGAGAAATATCTTCGTCGCTGTCTCGAATTGGTACATGACCGTGCAGTAAAAGCAACTCAATGGAACATACCTTTGAGATTAAGAGCAACAAACATAGGGACTTTATCAGAAAGCTTGAATACAGGTGAATCTTTTGTCTTTGATTGTCCCTCGGCCATGGAGACCAGGGGAGTAGTTATAAGTTCTGAAACTGGAGAAGAGTGGACTTTAGGGACAGTCATGGAGAGCAAGAGTATGATAAATATATTGAATAGTGCTTTGCTTAAGAAGTTTGTTGATTCAGATAGAAAGGAGAGTTTGAACAGGATGAACTTTTCTGATGCTGAGGGATTGATATGCTATGATTTTATGGACTCTCCAAGCGGTTTAAGTATATCTTCATCGTATAATCTCAAAAAGGTAACAACACCGTTTGCGCAAAATCATAATTACGGGTCCATTCCTGTCCATAAAAGGCTTGCTTCCACTTCTAGCGCCACCTCTACTAGTTCTGATTGGATGTCTTCAACTTCTACTTTATCTCAGGGAATGATCCAATGTACATGGAAGCGAGGGTTACCTCATTTTATTTTTTCCGCAGACGATCAAAAAGAGGTTTACGTGGCAAAATTGAGGAAGATAGTAGACTCAACAGATGATAAGGCTTTGGACTATGTGTATCAGTTTCACTTAAACAAGGGAAGTCAAAAGAGTCGTGAGATTGCTGACGATGATTTGCCGCTTGTTGGGAAAATGAATGTATCAACGAGTTTCACTCTTTGCTCGAATAGTTGTCGAATAATGGAGACCGAGTTCACATTATTCCATAACCTTGAAGTTTATGACAACACATCAGAGTATTCTCATCACATGAAGAACAAGGGGCTAAAGAAAAAGGTGTCACAAGTTTTCAGAACCAATCCTTCATCAAAACACAGAACACTCTCGAAGTTTAACAGATCTGGTGCCGTAGCTGAGAGTTGTCCGTGGGATCCACAAATTGATTTATTAGATGCTAATGTTCCTCCGAATTTTGAGATGGCTTCCATTGTTGTTAAAGACCATCTTCCTTGTAATAGGCCGGAAAAAATAGGAGGTTGGGGCTTAAAATTTCTCAACAAATCTGGTGTAAATAAAACCGCATCGCCTTCTGAAAGCTGTAATCAAAATAATGATGACTGCTCGTCGAGTATGAGCATTCTGATTCCAGCAGGCCTTCATGGTGGGCCTAGAACCAGAAATGGTGGTCCGTCTAGTCTGATAGATAGATGGAGATCTGGTGGTCACTGCGACTGCGGCGGTTGGGACGAGGGATGTCCTCTGACTGTACTTCAGAAAAGATCTAGCATAGTAGAGGTTCTGTCTCAAGTAGATACGAAAGGCGAGTGCATGTCAGTTGATCTAGTTACTCAGGGTTCGAACGATATCAGCCCGGCCTTAAGGATGGTAAATGTTCATGGCGGTCTATATTATATTCACTTTGACCAACCTCTTTCTGCACTACAGTCTTTCTCTATAGCTGTGGCTATAATTCATATGCAAAGTCCCACTCTTCGGCCAAACAGTGCACAAGAGCTGTCATAG
Protein sequence

>Msa0169440

MENVSLWIQKEGHWKKDSLVDLCSDREELSAEHEDSSKSQLKKLIKRSNSHSSIPVNAIQSQISKVFFKGLFFRHVSGLDNRIPKHMVSADEKYLRRCLELVHDRAVKATQWNIPLRLRATNIGTLSESLNTGESFVFDCPSAMETRGVVISSETGEEWTLGTVMESKSMINILNSALLKKFVDSDRKESLNRMNFSDAEGLICYDFMDSPSGLSISSSYNLKKVTTPFAQNHNYGSIPVHKRLASTSSATSTSSDWMSSTSTLSQGMIQCTWKRGLPHFIFSADDQKEVYVAKLRKIVDSTDDKALDYVYQFHLNKGSQKSREIADDDLPLVGKMNVSTSFTLCSNSCRIMETEFTLFHNLEVYDNTSEYSHHMKNKGLKKKVSQVFRTNPSSKHRTLSKFNRSGAVAESCPWDPQIDLLDANVPPNFEMASIVVKDHLPCNRPEKIGGWGLKFLNKSGVNKTASPSESCNQNNDDCSSSMSILIPAGLHGGPRTRNGGPSSLIDRWRSGGHCDCGGWDEGCPLTVLQKRSSIVEVLSQVDTKGECMSVDLVTQGSNDISPALRMVNVHGGLYYIHFDQPLSALQSFSIAVAIIHMQSPTLRPNSAQELS*