AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077030 MtrunA17_Chr1g0186181 95.090 611 28 1 1 611 1 609 0.0 1170
Msa0077030 MtrunA17_Chr1g0168411 44.097 288 108 9 228 512 22 259 7.97e-64 211
Msa0077030 MtrunA17_Chr1g0186211 71.084 83 23 1 276 358 6 87 7.54e-32 119
Msa0077030 MtrunA17_Chr4g0032351 32.778 180 99 6 422 600 665 823 6.91e-21 97.4
Msa0077030 MtrunA17_Chr4g0008861 36.441 118 72 2 481 598 765 879 4.14e-19 92.0
Msa0077030 MtrunA17_Chr8g0386851 30.163 368 204 16 266 604 327 670 4.30e-18 88.6
Msa0077030 MtrunA17_Chr5g0397401 29.275 345 170 10 266 596 269 553 7.89e-18 87.4
Msa0077030 MtrunA17_Chr2g0328721 34.848 132 80 3 482 610 755 883 1.03e-17 87.4
Msa0077030 MtrunA17_Chr7g0240931 36.290 124 68 3 473 595 688 801 5.16e-17 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077030 AT2G33360.1 35.788 584 299 17 62 609 56 599 5.07e-93 298
Msa0077030 AT2G33360.2 41.530 366 174 11 264 609 99 444 3.53e-81 263
Msa0077030 AT1G04490.9 34.271 391 184 14 225 604 67 395 1.53e-56 196
Msa0077030 AT1G04490.5 34.271 391 184 14 225 604 67 395 1.53e-56 196
Msa0077030 AT1G04490.6 34.271 391 184 14 225 604 67 395 1.53e-56 196
Msa0077030 AT1G04490.3 34.271 391 184 14 225 604 67 395 1.53e-56 196
Msa0077030 AT1G04490.7 34.271 391 184 14 225 604 67 395 1.53e-56 196
Msa0077030 AT1G04490.2 34.271 391 184 14 225 604 67 395 1.53e-56 196
Msa0077030 AT1G04490.1 34.271 391 184 14 225 604 67 395 1.53e-56 196
Msa0077030 AT1G04490.8 34.271 391 184 14 225 604 67 395 1.53e-56 196
Msa0077030 AT1G04490.4 34.177 316 149 12 225 529 67 334 8.72e-43 157
Msa0077030 AT1G63520.1 27.457 346 173 11 269 593 187 475 1.82e-25 110
Msa0077030 AT4G11450.1 30.194 361 193 15 274 596 285 624 2.54e-19 92.8
Msa0077030 AT5G01030.3 40.708 113 58 3 483 595 615 718 1.74e-18 90.1
Msa0077030 AT5G01030.1 40.708 113 58 3 483 595 615 718 1.74e-18 90.1
Msa0077030 AT5G01030.2 40.708 113 58 3 483 595 615 718 1.74e-18 90.1
Msa0077030 AT2G29510.1 36.296 135 69 5 483 608 667 793 1.48e-17 87.4
Msa0077030 AT2G37930.1 36.134 119 65 2 481 599 398 505 2.20e-17 86.3
Msa0077030 AT2G37930.3 36.134 119 65 2 481 599 426 533 2.55e-17 85.9
Msa0077030 AT2G37930.4 36.134 119 65 2 481 599 426 533 2.55e-17 85.9
Msa0077030 AT5G59020.1 36.207 116 70 3 481 594 614 727 3.42e-15 79.7
Msa0077030 AT2G37930.2 45.763 59 32 0 481 539 426 484 2.58e-12 70.1

Find 154 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTTATGTCCTGATTCTT+TGG 0.164405 1_2:+53472378 None:intergenic
AGTCTTTGTTGGAGATAATT+TGG 0.181839 1_2:+53475843 Msa0077030:three_prime_UTR
AGATGGAAAATGTAAGTTTA+TGG 0.213081 1_2:+53473307 Msa0077030:exon
ACTAGACGGACCACCATTTC+TGG 0.224898 1_2:-53474795 None:intergenic
TTACAAACACTTTCTCAATT+AGG 0.269396 1_2:-53475925 None:intergenic
CTCGAATAGTTGTCGAATAA+TGG 0.272428 1_2:+53474343 Msa0077030:CDS
AGTGTTTGTAACCATATTTA+TGG 0.273971 1_2:+53475937 Msa0077030:three_prime_UTR
CTGGAGAAGAGTGGACTTTA+GGG 0.278164 1_2:+53473772 Msa0077030:CDS
TGTGATTGAATAGCATTTAC+AGG 0.279426 1_2:-53473471 None:intergenic
TGTCATAAACTTCAAGGTTA+TGG 0.289180 1_2:-53474385 None:intergenic
CACCTGATGTTATCATATTT+AGG 0.294223 1_2:+53475721 Msa0077030:three_prime_UTR
ACTGGAGAAGAGTGGACTTT+AGG 0.303131 1_2:+53473771 Msa0077030:CDS
AGCTAAAGAAGTTGATTAAA+AGG 0.312395 1_2:+53473427 Msa0077030:CDS
CTGATTCCAGCAGGCCTTCA+TGG 0.314070 1_2:+53474761 Msa0077030:CDS
GGTCCATTCCTGTCCATAAA+AGG 0.314408 1_2:+53474015 Msa0077030:CDS
CATACAACTAGCCATAAATA+TGG 0.316473 1_2:-53475948 None:intergenic
TTAAAATTTCTCAACAAATC+TGG 0.318082 1_2:+53474665 Msa0077030:CDS
TTTCACTTTCACCGTTGTTT+TGG 0.331835 1_2:+53472478 Msa0077030:five_prime_UTR
AAAAGAGGGTCACTGGAAAA+AGG 0.339942 1_2:+53473335 Msa0077030:CDS
AGTGCTTTGCTTAAGAAGTT+TGG 0.342681 1_2:+53473834 Msa0077030:CDS
TTCAACTTCTACTTTATCTC+AGG 0.344781 1_2:+53474085 Msa0077030:CDS
GAACAAGGGGCTAAAGAAAA+AGG 0.347458 1_2:+53474436 Msa0077030:CDS
AAGACCATCTTCCTTGTAAT+AGG 0.349265 1_2:+53474618 Msa0077030:CDS
GCTACTTCTCTTCAACTTGT+TGG 0.359405 1_2:+53472745 Msa0077030:five_prime_UTR
ACGATATCAGCCCGGCCTTA+AGG 0.359469 1_2:+53475422 Msa0077030:CDS
GGACCACCATTTCTGGTTCT+AGG 0.365912 1_2:-53474788 None:intergenic
ATATATACCTGCTTAATTAC+CGG 0.367346 1_2:-53472822 None:intergenic
GTTTGGTGATTCAGATAGAA+AGG 0.384423 1_2:+53473851 Msa0077030:CDS
GACGATGATTTGCCGCTTGT+TGG 0.385963 1_2:+53474287 Msa0077030:CDS
ATGTGTTGTCATAAACTTCA+AGG 0.389477 1_2:-53474391 None:intergenic
CGGATTAATTAAGCTGAAGT+TGG 0.395373 1_2:-53472802 None:intergenic
TTCATCGTATAATCTCAAAA+AGG 0.399342 1_2:+53473959 Msa0077030:CDS
TCTTCGTCGCTGTCTCGAAT+TGG 0.399996 1_2:+53473590 Msa0077030:CDS
GTAGTTATAAGTTCTGAAAC+TGG 0.400801 1_2:+53473753 Msa0077030:CDS
TTTGCGCAAAATCATAATTA+CGG 0.401875 1_2:+53473993 Msa0077030:CDS
GTCACTGCGACTGCGGCGGT+TGG 0.402601 1_2:+53474843 Msa0077030:CDS
CACACATTAACCAAAGAATC+AGG 0.402985 1_2:-53472388 None:intergenic
ATGTTAGTGGACTTGACAAT+AGG 0.404627 1_2:+53473532 Msa0077030:CDS
GACAGCTCTTGTGCACTGTT+TGG 0.412328 1_2:-53475559 None:intergenic
TGGTTGACTTGTGCAGTGAT+AGG 0.412356 1_2:+53473364 Msa0077030:CDS
CAACTTCAGCTTAATTAATC+CGG 0.415209 1_2:+53472803 Msa0077030:five_prime_UTR
TTGCGCAAAATCATAATTAC+GGG 0.420948 1_2:+53473994 Msa0077030:CDS
ATATTACAGTAAGAGAACTA+TGG 0.422358 1_2:-53475617 None:intergenic
TCACTGCGACTGCGGCGGTT+GGG 0.423039 1_2:+53474844 Msa0077030:CDS
AGGACTAGTACAATGATGTT+TGG 0.424121 1_2:-53472414 None:intergenic
CTCTCGAAGTTTAACAGATC+TGG 0.427824 1_2:+53474503 Msa0077030:CDS
ATGAACATTTACCATCCTTA+AGG 0.428993 1_2:-53475437 None:intergenic
ATGGAAGCCATCTCAAAATT+CGG 0.429521 1_2:-53474587 None:intergenic
TCTGCGCTCACCATATGCTT+TGG 0.435520 1_2:-53473558 None:intergenic
AACTTGTTGGTGGGTTCTTG+AGG 0.436020 1_2:+53472758 Msa0077030:five_prime_UTR
CTCAACAGATGATAAGGCTT+TGG 0.437952 1_2:+53474208 Msa0077030:CDS
CGTCTAGTCTGATAGATAGA+TGG 0.438181 1_2:+53474810 Msa0077030:CDS
CTTCTCTTCAACTTGTTGGT+GGG 0.438433 1_2:+53472749 Msa0077030:five_prime_UTR
CTTTGATTGTCCCTCGGCCA+TGG 0.438982 1_2:+53473719 Msa0077030:CDS
GGCCCACCATGAAGGCCTGC+TGG 0.440167 1_2:-53474767 None:intergenic
GTTATGGAATAATGTGAAAT+CGG 0.443303 1_2:-53474369 None:intergenic
ACGATGATTTGCCGCTTGTT+GGG 0.444880 1_2:+53474288 Msa0077030:CDS
GCATCTAATAAATCAATTTG+TGG 0.445579 1_2:-53474554 None:intergenic
TAGAATGTAAAAGTCTTTGT+TGG 0.446257 1_2:+53475832 Msa0077030:three_prime_UTR
GTCCCTCGGCCATGGAGACC+AGG 0.450997 1_2:+53473727 Msa0077030:CDS
TCCCCTGGTCTCCATGGCCG+AGG 0.451022 1_2:-53473730 None:intergenic
AATTAAGCTGAAGTTGGATC+TGG 0.455968 1_2:-53472796 None:intergenic
CCGGCCTATTACAAGGAAGA+TGG 0.462136 1_2:-53474622 None:intergenic
TTCCTAAATATGATAACATC+AGG 0.463573 1_2:-53475723 None:intergenic
CTGATAGATAGATGGAGATC+TGG 0.466242 1_2:+53474818 Msa0077030:CDS
GTCAGTTGATCTAGTTACTC+AGG 0.468769 1_2:+53474952 Msa0077030:CDS
TTAAGGATGGTAAATGTTCA+TGG 0.469525 1_2:+53475439 Msa0077030:CDS
AGTAGACTCAACAGATGATA+AGG 0.470322 1_2:+53474202 Msa0077030:CDS
CGACTGCGGCGGTTGGGACG+AGG 0.471254 1_2:+53474850 Msa0077030:CDS
ATAGAAAGGAGAGTTTGAAC+AGG 0.474728 1_2:+53473865 Msa0077030:CDS
ACTTCTCTTCAACTTGTTGG+TGG 0.477217 1_2:+53472748 Msa0077030:five_prime_UTR
AGATTAAGAGCAACAAACAT+AGG 0.478624 1_2:+53473657 Msa0077030:CDS
TTATCAGAAAGCTTGAATAC+AGG 0.482301 1_2:+53473684 Msa0077030:CDS
CAATAGGATTCCAAAGCATA+TGG 0.482636 1_2:+53473548 Msa0077030:CDS
CCACCTCTACTAGTTCTGAT+TGG 0.483900 1_2:+53474057 Msa0077030:CDS
TTCCGCAGACGATCAGAAAG+AGG 0.493042 1_2:+53474154 Msa0077030:CDS
CAAAGAATCAGGACATAAAG+TGG 0.495538 1_2:-53472377 None:intergenic
ATATGCAAAGTCCCACTCTT+CGG 0.496153 1_2:+53475536 Msa0077030:CDS
TCATATTTGTTAATGAGAAG+TGG 0.496945 1_2:+53475893 Msa0077030:three_prime_UTR
TTCCAGCAGGCCTTCATGGT+GGG 0.499228 1_2:+53474765 Msa0077030:CDS
AATTAATCCGGTAATTAAGC+AGG 0.501568 1_2:+53472815 Msa0077030:five_prime_UTR
AGGTTTACGTGGCAAAATTG+AGG 0.509747 1_2:+53474174 Msa0077030:CDS
CATTTACCATCCTTAAGGCC+GGG 0.512909 1_2:-53475432 None:intergenic
TTTGTTGCTCTTAATCTCAA+AGG 0.513085 1_2:-53473651 None:intergenic
AACTACTCCCCTGGTCTCCA+TGG 0.514088 1_2:-53473736 None:intergenic
AGGATTCTAGTATTTGTTTG+CGG 0.516373 1_2:+53472568 Msa0077030:five_prime_UTR
GGTGGGCCTAGAACCAGAAA+TGG 0.516565 1_2:+53474782 Msa0077030:CDS
ACATTTACCATCCTTAAGGC+CGG 0.521286 1_2:-53475433 None:intergenic
AGTAGAGGTGGCGCTAGAAG+TGG 0.521940 1_2:-53474045 None:intergenic
AAAGACTGTAGTGCAGAAAG+AGG 0.522353 1_2:-53475490 None:intergenic
TGCACTGTTTGGCCGAAGAG+TGG 0.531993 1_2:-53475548 None:intergenic
TGAATTGTAGAGGTAGAAGA+TGG 0.535472 1_2:+53473290 Msa0077030:exon
TCTGGTGGTCACTGCGACTG+CGG 0.536572 1_2:+53474836 Msa0077030:CDS
CCATCTTCCTTGTAATAGGC+CGG 0.539744 1_2:+53474622 Msa0077030:CDS
CCCCTGGTCTCCATGGCCGA+GGG 0.542474 1_2:-53473729 None:intergenic
TGGTTCTAGGCCCACCATGA+AGG 0.543081 1_2:-53474775 None:intergenic
GTGCAGTAAAAGCAACTCAA+TGG 0.546874 1_2:+53473622 Msa0077030:CDS
ACTGTAGTGCAGAAAGAGGT+TGG 0.548905 1_2:-53475486 None:intergenic
GGTTGACTTGTGCAGTGATA+GGG 0.549117 1_2:+53473365 Msa0077030:CDS
GAAGATATACTTAAACCGCT+TGG 0.559049 1_2:-53473939 None:intergenic
TAGGACGCGGTTGTGAATGA+AGG 0.559499 1_2:-53472434 None:intergenic
TGCAACTCGAGAGAAGAGTC+TGG 0.560185 1_2:+53475643 Msa0077030:three_prime_UTR
TATCAGTTTCACTTAAACAA+GGG 0.562342 1_2:+53474239 Msa0077030:CDS
ATTCCAGCAGGCCTTCATGG+TGG 0.566953 1_2:+53474764 Msa0077030:CDS
AAAATAACAACCCTAAACAT+AGG 0.568010 1_2:-53475692 None:intergenic
AAGATGGTCTTTAACAACAA+TGG 0.573400 1_2:-53474606 None:intergenic
ATGAGCATTCTGATTCCAGC+AGG 0.575520 1_2:+53474752 Msa0077030:CDS
GACTGCGGCGGTTGGGACGA+GGG 0.575823 1_2:+53474851 Msa0077030:CDS
AGGGAATGATCCAATGTACA+TGG 0.577871 1_2:+53474105 Msa0077030:CDS
TCAACTTCTACTTTATCTCA+GGG 0.579262 1_2:+53474086 Msa0077030:CDS
TCATTAATCTTGAATTGTAG+AGG 0.580896 1_2:+53473280 Msa0077030:five_prime_UTR
AGAACTTATAACTACTCCCC+TGG 0.581477 1_2:-53473745 None:intergenic
TCCCTCGGCCATGGAGACCA+GGG 0.582391 1_2:+53473728 Msa0077030:CDS
ATTCTAGTATTTGTTTGCGG+TGG 0.590160 1_2:+53472571 Msa0077030:five_prime_UTR
GATTAAGAGCAACAAACATA+GGG 0.591898 1_2:+53473658 Msa0077030:CDS
AAATCAATTTGTGGATCCCA+CGG 0.593823 1_2:-53474545 None:intergenic
GAAAAGATCTAGCATAGTAG+AGG 0.598200 1_2:+53474895 Msa0077030:CDS
CTCATCACATGAAGAACAAG+GGG 0.606607 1_2:+53474423 Msa0077030:CDS
GTATCAGTTTCACTTAAACA+AGG 0.609853 1_2:+53474238 Msa0077030:CDS
CGTAGCTGAGAGTTGTCCGT+GGG 0.610134 1_2:+53474529 Msa0077030:CDS
TATCAGCCCGGCCTTAAGGA+TGG 0.610756 1_2:+53475426 Msa0077030:CDS
CCCTCGGCCATGGAGACCAG+GGG 0.612407 1_2:+53473729 Msa0077030:CDS
ATCCAATGTACATGGAAGCG+AGG 0.613426 1_2:+53474113 Msa0077030:CDS
GCACTGTTTGGCCGAAGAGT+GGG 0.617830 1_2:-53475547 None:intergenic
ACCCTCGCTTCCATGTACAT+TGG 0.618074 1_2:-53474115 None:intergenic
AACCATATTAACCAAAACAA+CGG 0.621718 1_2:-53472489 None:intergenic
GGGTTCGAACGATATCAGCC+CGG 0.623230 1_2:+53475414 Msa0077030:intron
TCCAATGTACATGGAAGCGA+GGG 0.623512 1_2:+53474114 Msa0077030:CDS
AATACTAGAATCCTACAACT+AGG 0.626257 1_2:-53472559 None:intergenic
ATAGATAGATGGAGATCTGG+TGG 0.626756 1_2:+53474821 Msa0077030:CDS
CCAATCAGAACTAGTAGAGG+TGG 0.627075 1_2:-53474057 None:intergenic
GGTGGTCACTGCGACTGCGG+CGG 0.629032 1_2:+53474839 Msa0077030:CDS
CATCTATCTATCAGACTAGA+CGG 0.630501 1_2:-53474809 None:intergenic
GTGGACTTTAGGGACAGTCA+TGG 0.630587 1_2:+53473782 Msa0077030:CDS
TTCTCATCACATGAAGAACA+AGG 0.630955 1_2:+53474421 Msa0077030:CDS
ATGAAGACAAGAACATGGGT+AGG 0.631058 1_2:-53472453 None:intergenic
ACAGTCTTTCTCTATAGCTG+TGG 0.633106 1_2:+53475504 Msa0077030:CDS
CTAAATATGATAACATCAGG+TGG 0.634351 1_2:-53475720 None:intergenic
CATCCAATCAGAACTAGTAG+AGG 0.635289 1_2:-53474060 None:intergenic
AAACAATGAAGACAAGAACA+TGG 0.637787 1_2:-53472458 None:intergenic
GGGCCTAGAACCAGAAATGG+TGG 0.641403 1_2:+53474785 Msa0077030:CDS
AACCTCTTTCTGATCGTCTG+CGG 0.643057 1_2:-53474156 None:intergenic
CTGTCTCAAGTAGATACGAA+AGG 0.644059 1_2:+53474920 Msa0077030:CDS
CGATCAGAAAGAGGTTTACG+TGG 0.645296 1_2:+53474163 Msa0077030:CDS
CCGTAGCTGAGAGTTGTCCG+TGG 0.650640 1_2:+53474528 Msa0077030:CDS
CCACGGACAACTCTCAGCTA+CGG 0.651291 1_2:-53474528 None:intergenic
GTTCTGAAACTGGAGAAGAG+TGG 0.658656 1_2:+53473763 Msa0077030:CDS
AACAATGAAGACAAGAACAT+GGG 0.665946 1_2:-53472457 None:intergenic
TCTCATCACATGAAGAACAA+GGG 0.672541 1_2:+53474422 Msa0077030:CDS
GAAGCCATCTCAAAATTCGG+AGG 0.676216 1_2:-53474584 None:intergenic
ACAAGAACATGGGTAGGACG+CGG 0.687379 1_2:-53472447 None:intergenic
ACAGCTTTCAGAAGGCGATG+CGG 0.697212 1_2:-53474699 None:intergenic
AGGACAATGACTTTGAGACA+CGG 0.706071 1_2:+53473251 Msa0077030:intron
AGGATGGTAAATGTTCATGG+CGG 0.792410 1_2:+53475442 Msa0077030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAAGAAAAATTGTATTT+TGG + chr1_2:53472534-53472553 Msa0077030:five_prime_UTR 10.0%
!!! GAATTTGTTTAATAATTTAT+TGG + chr1_2:53472920-53472939 Msa0077030:intron 10.0%
!!! TAAATATATTTTGTTGTTTT+AGG + chr1_2:53473129-53473148 Msa0077030:intron 10.0%
!! ATTACATTAAAATTAAAATC+TGG - chr1_2:53475240-53475259 None:intergenic 10.0%
!! AAGATTCTTTACAATAATTA+AGG - chr1_2:53473079-53473098 None:intergenic 15.0%
!! TAATCTCATTATATTATAGT+TGG + chr1_2:53475030-53475049 Msa0077030:intron 15.0%
!!! TGATTTATGTTTTTAGAACA+TGG + chr1_2:53472987-53473006 Msa0077030:intron 20.0%
!! TATGCAAAATAATGAAGAAA+AGG - chr1_2:53473181-53473200 None:intergenic 20.0%
!!! TAAAGTGTATTTTTTCTTGT+AGG + chr1_2:53473231-53473250 Msa0077030:intron 20.0%
!!! ATTGATATGCTATGATTTTA+TGG + chr1_2:53473911-53473930 Msa0077030:CDS 20.0%
!! TTAAAATTTCTCAACAAATC+TGG + chr1_2:53474665-53474684 Msa0077030:CDS 20.0%
!! ACATTAAAATTAAAATCTGG+TGG - chr1_2:53475237-53475256 None:intergenic 20.0%
!! AATTACTTTCTATAACTTTC+AGG + chr1_2:53475393-53475412 Msa0077030:intron 20.0%
!! ATTACTTTCTATAACTTTCA+GGG + chr1_2:53475394-53475413 Msa0077030:intron 20.0%
! AACCATATTAACCAAAACAA+CGG - chr1_2:53472492-53472511 None:intergenic 25.0%
!!! TTTTTTAGTACAAGGAAGAA+AGG - chr1_2:53472682-53472701 None:intergenic 25.0%
!!! AAATGAGCTTTTTTAGTACA+AGG - chr1_2:53472690-53472709 None:intergenic 25.0%
!!! CTAAAAAAGCTCATTTTTTG+AGG + chr1_2:53472694-53472713 Msa0077030:five_prime_UTR 25.0%
! ATATATACCTGCTTAATTAC+CGG - chr1_2:53472825-53472844 None:intergenic 25.0%
! GGATTAAGGTTGTAAATTAT+GGG + chr1_2:53473026-53473045 Msa0077030:intron 25.0%
!!! ATATTTTGTTGTTTTAGGAC+AGG + chr1_2:53473134-53473153 Msa0077030:intron 25.0%
!! TTTGCATACAATTTTCTTGT+TGG + chr1_2:53473193-53473212 Msa0077030:intron 25.0%
! TCATTAATCTTGAATTGTAG+AGG + chr1_2:53473280-53473299 Msa0077030:five_prime_UTR 25.0%
! AGATGGAAAATGTAAGTTTA+TGG + chr1_2:53473307-53473326 Msa0077030:exon 25.0%
! AAGTTTATGGATTCAAAAAG+AGG + chr1_2:53473320-53473339 Msa0077030:CDS 25.0%
! AGTTTATGGATTCAAAAAGA+GGG + chr1_2:53473321-53473340 Msa0077030:CDS 25.0%
!! AGCTAAAGAAGTTGATTAAA+AGG + chr1_2:53473427-53473446 Msa0077030:CDS 25.0%
!! AATCAGTAAAGTTTTCTTCA+AGG + chr1_2:53473494-53473513 Msa0077030:CDS 25.0%
!! ATCAGTAAAGTTTTCTTCAA+GGG + chr1_2:53473495-53473514 Msa0077030:CDS 25.0%
!!! TTATTTTTCAGACATGTTAG+TGG + chr1_2:53473519-53473538 Msa0077030:CDS 25.0%
! TTCATCGTATAATCTCAAAA+AGG + chr1_2:53473959-53473978 Msa0077030:CDS 25.0%
!! TAATTATGATTTTGCGCAAA+CGG - chr1_2:53473993-53474012 None:intergenic 25.0%
! TTTGCGCAAAATCATAATTA+CGG + chr1_2:53473993-53474012 Msa0077030:CDS 25.0%
! TATCAGTTTCACTTAAACAA+GGG + chr1_2:53474239-53474258 Msa0077030:CDS 25.0%
! GTTATGGAATAATGTGAAAT+CGG - chr1_2:53474372-53474391 None:intergenic 25.0%
! GCATCTAATAAATCAATTTG+TGG - chr1_2:53474557-53474576 None:intergenic 25.0%
! TTATATTATAGTTGGATCTG+AGG + chr1_2:53475038-53475057 Msa0077030:intron 25.0%
! ATGTAGAAAATGTATCATTG+AGG - chr1_2:53475136-53475155 None:intergenic 25.0%
! TTAAAATTAAAATCTGGTGG+TGG - chr1_2:53475234-53475253 None:intergenic 25.0%
! ATATTACAGTAAGAGAACTA+TGG - chr1_2:53475620-53475639 None:intergenic 25.0%
! AAAATAACAACCCTAAACAT+AGG - chr1_2:53475695-53475714 None:intergenic 25.0%
! TTCCTAAATATGATAACATC+AGG - chr1_2:53475726-53475745 None:intergenic 25.0%
! AAAAAGAATGAGGAAAAAGA+TGG - chr1_2:53475800-53475819 None:intergenic 25.0%
! TAGAATGTAAAAGTCTTTGT+TGG + chr1_2:53475832-53475851 Msa0077030:three_prime_UTR 25.0%
!! TCATATTTGTTAATGAGAAG+TGG + chr1_2:53475893-53475912 Msa0077030:three_prime_UTR 25.0%
! TTACAAACACTTTCTCAATT+AGG - chr1_2:53475928-53475947 None:intergenic 25.0%
! AGTGTTTGTAACCATATTTA+TGG + chr1_2:53475937-53475956 Msa0077030:three_prime_UTR 25.0%
AACAATGAAGACAAGAACAT+GGG - chr1_2:53472460-53472479 None:intergenic 30.0%
AAACAATGAAGACAAGAACA+TGG - chr1_2:53472461-53472480 None:intergenic 30.0%
AATACTAGAATCCTACAACT+AGG - chr1_2:53472562-53472581 None:intergenic 30.0%
AGGATTCTAGTATTTGTTTG+CGG + chr1_2:53472568-53472587 Msa0077030:five_prime_UTR 30.0%
GAAAACAAAAATGAGCACAT+GGG - chr1_2:53472650-53472669 None:intergenic 30.0%
AGAAAACAAAAATGAGCACA+TGG - chr1_2:53472651-53472670 None:intergenic 30.0%
CAACTTCAGCTTAATTAATC+CGG + chr1_2:53472803-53472822 Msa0077030:five_prime_UTR 30.0%
AATTAATCCGGTAATTAAGC+AGG + chr1_2:53472815-53472834 Msa0077030:five_prime_UTR 30.0%
!! TTTGTATGGATTAGTCTGTT+TGG + chr1_2:53472962-53472981 Msa0077030:intron 30.0%
GGGATTAAGGTTGTAAATTA+TGG + chr1_2:53473025-53473044 Msa0077030:intron 30.0%
TGTAAATTATGGGATGATTG+AGG + chr1_2:53473036-53473055 Msa0077030:intron 30.0%
! TGTAAAGAATCTTTGCCTTT+TGG + chr1_2:53473086-53473105 Msa0077030:intron 30.0%
CTCTATTATTTGTGACCAAA+AGG - chr1_2:53473104-53473123 None:intergenic 30.0%
GAAGAAAAGGTGAAAAACAA+TGG - chr1_2:53473168-53473187 None:intergenic 30.0%
TGTGATTGAATAGCATTTAC+AGG - chr1_2:53473474-53473493 None:intergenic 30.0%
TTTGTTGCTCTTAATCTCAA+AGG - chr1_2:53473654-53473673 None:intergenic 30.0%
AGATTAAGAGCAACAAACAT+AGG + chr1_2:53473657-53473676 Msa0077030:CDS 30.0%
GATTAAGAGCAACAAACATA+GGG + chr1_2:53473658-53473677 Msa0077030:CDS 30.0%
TTATCAGAAAGCTTGAATAC+AGG + chr1_2:53473684-53473703 Msa0077030:CDS 30.0%
!! GTAGTTATAAGTTCTGAAAC+TGG + chr1_2:53473753-53473772 Msa0077030:CDS 30.0%
TTGCGCAAAATCATAATTAC+GGG + chr1_2:53473994-53474013 Msa0077030:CDS 30.0%
TTCAACTTCTACTTTATCTC+AGG + chr1_2:53474085-53474104 Msa0077030:CDS 30.0%
TCAACTTCTACTTTATCTCA+GGG + chr1_2:53474086-53474105 Msa0077030:CDS 30.0%
TCTGCGGAAAAAATAAAATG+AGG - chr1_2:53474143-53474162 None:intergenic 30.0%
GTATCAGTTTCACTTAAACA+AGG + chr1_2:53474238-53474257 Msa0077030:CDS 30.0%
TGTCATAAACTTCAAGGTTA+TGG - chr1_2:53474388-53474407 None:intergenic 30.0%
ATGTGTTGTCATAAACTTCA+AGG - chr1_2:53474394-53474413 None:intergenic 30.0%
AAGATGGTCTTTAACAACAA+TGG - chr1_2:53474609-53474628 None:intergenic 30.0%
!! TTTTGATTACAGCTTTCAGA+AGG - chr1_2:53474710-53474729 None:intergenic 30.0%
! AGAAGCACAATACAAAAGAA+AGG - chr1_2:53475113-53475132 None:intergenic 30.0%
CTGTCAAATATAACACATTG+TGG - chr1_2:53475270-53475289 None:intergenic 30.0%
ATGAACATTTACCATCCTTA+AGG - chr1_2:53475440-53475459 None:intergenic 30.0%
TTAAGGATGGTAAATGTTCA+TGG + chr1_2:53475439-53475458 Msa0077030:CDS 30.0%
!!! CTGGTTTTTTTATGTGATTC+AGG + chr1_2:53475662-53475681 Msa0077030:three_prime_UTR 30.0%
!!! AGGTTTTGTTCCTATGTTTA+GGG + chr1_2:53475682-53475701 Msa0077030:three_prime_UTR 30.0%
CTAAATATGATAACATCAGG+TGG - chr1_2:53475723-53475742 None:intergenic 30.0%
CACCTGATGTTATCATATTT+AGG + chr1_2:53475721-53475740 Msa0077030:three_prime_UTR 30.0%
CTCTTCAACAAAAAAGAATG+AGG - chr1_2:53475810-53475829 None:intergenic 30.0%
!!! CTCATTCTTTTTTGTTGAAG+AGG + chr1_2:53475808-53475827 Msa0077030:three_prime_UTR 30.0%
AGTCTTTGTTGGAGATAATT+TGG + chr1_2:53475843-53475862 Msa0077030:three_prime_UTR 30.0%
CATACAACTAGCCATAAATA+TGG - chr1_2:53475951-53475970 None:intergenic 30.0%
CACACATTAACCAAAGAATC+AGG - chr1_2:53472391-53472410 None:intergenic 35.0%
! AGGACTAGTACAATGATGTT+TGG - chr1_2:53472417-53472436 None:intergenic 35.0%
! TTTCACTTTCACCGTTGTTT+TGG + chr1_2:53472478-53472497 Msa0077030:five_prime_UTR 35.0%
!!! CACCGTTGTTTTGGTTAATA+TGG + chr1_2:53472487-53472506 Msa0077030:five_prime_UTR 35.0%
!!! GTATTTTGGAACCTAGTTGT+AGG + chr1_2:53472548-53472567 Msa0077030:five_prime_UTR 35.0%
ATTCTAGTATTTGTTTGCGG+TGG + chr1_2:53472571-53472590 Msa0077030:five_prime_UTR 35.0%
AATTAAGCTGAAGTTGGATC+TGG - chr1_2:53472799-53472818 None:intergenic 35.0%
CGGATTAATTAAGCTGAAGT+TGG - chr1_2:53472805-53472824 None:intergenic 35.0%
!! TTTCTAGCCTTTGGTTTGTA+TGG + chr1_2:53472948-53472967 Msa0077030:intron 35.0%
GACTAATCCATACAAACCAA+AGG - chr1_2:53472958-53472977 None:intergenic 35.0%
!! ACATGGTTGACTTTGTCTTT+TGG + chr1_2:53473004-53473023 Msa0077030:intron 35.0%
!! CATGGTTGACTTTGTCTTTT+GGG + chr1_2:53473005-53473024 Msa0077030:intron 35.0%
!!! GACTTTGTCTTTTGGGATTA+AGG + chr1_2:53473012-53473031 Msa0077030:intron 35.0%
TGAATTGTAGAGGTAGAAGA+TGG + chr1_2:53473290-53473309 Msa0077030:exon 35.0%
!! ATGTTAGTGGACTTGACAAT+AGG + chr1_2:53473532-53473551 Msa0077030:CDS 35.0%
CAATAGGATTCCAAAGCATA+TGG + chr1_2:53473548-53473567 Msa0077030:CDS 35.0%
!!! ATTGAGTTGCTTTTACTGCA+CGG - chr1_2:53473623-53473642 None:intergenic 35.0%
! TTTTGTCTTTGATTGTCCCT+CGG + chr1_2:53473713-53473732 Msa0077030:CDS 35.0%
AGTGCTTTGCTTAAGAAGTT+TGG + chr1_2:53473834-53473853 Msa0077030:CDS 35.0%
! GTTTGGTGATTCAGATAGAA+AGG + chr1_2:53473851-53473870 Msa0077030:CDS 35.0%
ATAGAAAGGAGAGTTTGAAC+AGG + chr1_2:53473865-53473884 Msa0077030:CDS 35.0%
! ATGAACTTTTCTGATGCTGA+GGG + chr1_2:53473888-53473907 Msa0077030:CDS 35.0%
GAAGATATACTTAAACCGCT+TGG - chr1_2:53473942-53473961 None:intergenic 35.0%
AGTAGACTCAACAGATGATA+AGG + chr1_2:53474202-53474221 Msa0077030:CDS 35.0%
! ACATTCATTTTCCCAACAAG+CGG - chr1_2:53474302-53474321 None:intergenic 35.0%
CTCGAATAGTTGTCGAATAA+TGG + chr1_2:53474343-53474362 Msa0077030:CDS 35.0%
TTCTCATCACATGAAGAACA+AGG + chr1_2:53474421-53474440 Msa0077030:CDS 35.0%
TCTCATCACATGAAGAACAA+GGG + chr1_2:53474422-53474441 Msa0077030:CDS 35.0%
!!! TCTGTGTTTTGATGAAGGAT+TGG - chr1_2:53474480-53474499 None:intergenic 35.0%
!!! AGTGTTCTGTGTTTTGATGA+AGG - chr1_2:53474485-53474504 None:intergenic 35.0%
AAATCAATTTGTGGATCCCA+CGG - chr1_2:53474548-53474567 None:intergenic 35.0%
ATGGAAGCCATCTCAAAATT+CGG - chr1_2:53474590-53474609 None:intergenic 35.0%
AAGACCATCTTCCTTGTAAT+AGG + chr1_2:53474618-53474637 Msa0077030:CDS 35.0%
!!! ATTTTTTCCGGCCTATTACA+AGG - chr1_2:53474632-53474651 None:intergenic 35.0%
TGTAATAGGCCGGAAAAAAT+AGG + chr1_2:53474632-53474651 Msa0077030:CDS 35.0%
CATCTATCTATCAGACTAGA+CGG - chr1_2:53474812-53474831 None:intergenic 35.0%
!!! CTTTTCTGAAGTACAGTAAG+AGG - chr1_2:53474881-53474900 None:intergenic 35.0%
GAAAAGATCTAGCATAGTAG+AGG + chr1_2:53474895-53474914 Msa0077030:CDS 35.0%
TGGTCTATAGTAGCGAAAAT+GGG + chr1_2:53475177-53475196 Msa0077030:intron 35.0%
!!! CAGGTTTTGTTCCTATGTTT+AGG + chr1_2:53475681-53475700 Msa0077030:three_prime_UTR 35.0%
ATGAAGACAAGAACATGGGT+AGG - chr1_2:53472456-53472475 None:intergenic 40.0%
ACAAAAATGAGCACATGGGA+GGG - chr1_2:53472646-53472665 None:intergenic 40.0%
AACAAAAATGAGCACATGGG+AGG - chr1_2:53472647-53472666 None:intergenic 40.0%
GCTACTTCTCTTCAACTTGT+TGG + chr1_2:53472745-53472764 Msa0077030:five_prime_UTR 40.0%
!! ACTTCTCTTCAACTTGTTGG+TGG + chr1_2:53472748-53472767 Msa0077030:five_prime_UTR 40.0%
!! CTTCTCTTCAACTTGTTGGT+GGG + chr1_2:53472749-53472768 Msa0077030:five_prime_UTR 40.0%
! TTGGAGAACTTTCTAGCCTT+TGG + chr1_2:53472939-53472958 Msa0077030:intron 40.0%
!! AGGACAATGACTTTGAGACA+CGG + chr1_2:53473251-53473270 Msa0077030:intron 40.0%
AAAAGAGGGTCACTGGAAAA+AGG + chr1_2:53473335-53473354 Msa0077030:CDS 40.0%
TCACTGGAAAAAGGATTCGT+TGG + chr1_2:53473344-53473363 Msa0077030:CDS 40.0%
GTGCAGTAAAAGCAACTCAA+TGG + chr1_2:53473622-53473641 Msa0077030:CDS 40.0%
AGAACTTATAACTACTCCCC+TGG - chr1_2:53473748-53473767 None:intergenic 40.0%
! GATGAACTTTTCTGATGCTG+AGG + chr1_2:53473887-53473906 Msa0077030:CDS 40.0%
! GATTTTATGGACTCTCCAAG+CGG + chr1_2:53473924-53473943 Msa0077030:CDS 40.0%
! AAGCCTTTTATGGACAGGAA+TGG - chr1_2:53474021-53474040 None:intergenic 40.0%
! AAGTGGAAGCAAGCCTTTTA+TGG - chr1_2:53474031-53474050 None:intergenic 40.0%
CATCCAATCAGAACTAGTAG+AGG - chr1_2:53474063-53474082 None:intergenic 40.0%
AGGGAATGATCCAATGTACA+TGG + chr1_2:53474105-53474124 Msa0077030:CDS 40.0%
AGGTTTACGTGGCAAAATTG+AGG + chr1_2:53474174-53474193 Msa0077030:CDS 40.0%
CTCAACAGATGATAAGGCTT+TGG + chr1_2:53474208-53474227 Msa0077030:CDS 40.0%
CTCATCACATGAAGAACAAG+GGG + chr1_2:53474423-53474442 Msa0077030:CDS 40.0%
GAACAAGGGGCTAAAGAAAA+AGG + chr1_2:53474436-53474455 Msa0077030:CDS 40.0%
CTCTCGAAGTTTAACAGATC+TGG + chr1_2:53474503-53474522 Msa0077030:CDS 40.0%
!! TGTTCCTCCGAATTTTGAGA+TGG + chr1_2:53474580-53474599 Msa0077030:CDS 40.0%
AATAGGCCGGAAAAAATAGG+AGG + chr1_2:53474635-53474654 Msa0077030:CDS 40.0%
CGTCTAGTCTGATAGATAGA+TGG + chr1_2:53474810-53474829 Msa0077030:CDS 40.0%
CTGATAGATAGATGGAGATC+TGG + chr1_2:53474818-53474837 Msa0077030:CDS 40.0%
ATAGATAGATGGAGATCTGG+TGG + chr1_2:53474821-53474840 Msa0077030:CDS 40.0%
CTGTCTCAAGTAGATACGAA+AGG + chr1_2:53474920-53474939 Msa0077030:CDS 40.0%
GTCAGTTGATCTAGTTACTC+AGG + chr1_2:53474952-53474971 Msa0077030:CDS 40.0%
GTGGTCTATAGTAGCGAAAA+TGG + chr1_2:53475176-53475195 Msa0077030:intron 40.0%
ACATTTACCATCCTTAAGGC+CGG - chr1_2:53475436-53475455 None:intergenic 40.0%
AGGATGGTAAATGTTCATGG+CGG + chr1_2:53475442-53475461 Msa0077030:CDS 40.0%
AAAGACTGTAGTGCAGAAAG+AGG - chr1_2:53475493-53475512 None:intergenic 40.0%
ACAGTCTTTCTCTATAGCTG+TGG + chr1_2:53475504-53475523 Msa0077030:CDS 40.0%
ATATGCAAAGTCCCACTCTT+CGG + chr1_2:53475536-53475555 Msa0077030:CDS 40.0%
!! AACTTGTTGGTGGGTTCTTG+AGG + chr1_2:53472758-53472777 Msa0077030:five_prime_UTR 45.0%
GGATTCAAAAAGAGGGTCAC+TGG + chr1_2:53473328-53473347 Msa0077030:CDS 45.0%
!! TGGTTGACTTGTGCAGTGAT+AGG + chr1_2:53473364-53473383 Msa0077030:CDS 45.0%
!! GGTTGACTTGTGCAGTGATA+GGG + chr1_2:53473365-53473384 Msa0077030:CDS 45.0%
!! GTTCTGAAACTGGAGAAGAG+TGG + chr1_2:53473763-53473782 Msa0077030:CDS 45.0%
! ACTGGAGAAGAGTGGACTTT+AGG + chr1_2:53473771-53473790 Msa0077030:CDS 45.0%
! CTGGAGAAGAGTGGACTTTA+GGG + chr1_2:53473772-53473791 Msa0077030:CDS 45.0%
GGTCCATTCCTGTCCATAAA+AGG + chr1_2:53474015-53474034 Msa0077030:CDS 45.0%
! GAAGCAAGCCTTTTATGGAC+AGG - chr1_2:53474026-53474045 None:intergenic 45.0%
CCAATCAGAACTAGTAGAGG+TGG - chr1_2:53474060-53474079 None:intergenic 45.0%
!! CCACCTCTACTAGTTCTGAT+TGG + chr1_2:53474057-53474076 Msa0077030:CDS 45.0%
ATCCAATGTACATGGAAGCG+AGG + chr1_2:53474113-53474132 Msa0077030:CDS 45.0%
TCCAATGTACATGGAAGCGA+GGG + chr1_2:53474114-53474133 Msa0077030:CDS 45.0%
AACCTCTTTCTGATCGTCTG+CGG - chr1_2:53474159-53474178 None:intergenic 45.0%
CGATCAGAAAGAGGTTTACG+TGG + chr1_2:53474163-53474182 Msa0077030:CDS 45.0%
! ACGATGATTTGCCGCTTGTT+GGG + chr1_2:53474288-53474307 Msa0077030:CDS 45.0%
GAAGCCATCTCAAAATTCGG+AGG - chr1_2:53474587-53474606 None:intergenic 45.0%
CCATCTTCCTTGTAATAGGC+CGG + chr1_2:53474622-53474641 Msa0077030:CDS 45.0%
GCCGGAAAAAATAGGAGGTT+GGG + chr1_2:53474640-53474659 Msa0077030:CDS 45.0%
!!! CCCCAACCTCCTATTTTTTC+CGG - chr1_2:53474644-53474663 None:intergenic 45.0%
CCGGAAAAAATAGGAGGTTG+GGG + chr1_2:53474641-53474660 Msa0077030:CDS 45.0%
ATGAGCATTCTGATTCCAGC+AGG + chr1_2:53474752-53474771 Msa0077030:CDS 45.0%
ATAGACCTCCTTCTGTCAGA+AGG + chr1_2:53475154-53475173 Msa0077030:intron 45.0%
ATAGACCACCTTCTGACAGA+AGG - chr1_2:53475165-53475184 None:intergenic 45.0%
CATTTACCATCCTTAAGGCC+GGG - chr1_2:53475435-53475454 None:intergenic 45.0%
ACTGTAGTGCAGAAAGAGGT+TGG - chr1_2:53475489-53475508 None:intergenic 45.0%
TAGGACGCGGTTGTGAATGA+AGG - chr1_2:53472437-53472456 None:intergenic 50.0%
ACAAGAACATGGGTAGGACG+CGG - chr1_2:53472450-53472469 None:intergenic 50.0%
TCTGCGCTCACCATATGCTT+TGG - chr1_2:53473561-53473580 None:intergenic 50.0%
TCTTCGTCGCTGTCTCGAAT+TGG + chr1_2:53473590-53473609 Msa0077030:CDS 50.0%
! GTGGACTTTAGGGACAGTCA+TGG + chr1_2:53473782-53473801 Msa0077030:CDS 50.0%
ACCCTCGCTTCCATGTACAT+TGG - chr1_2:53474118-53474137 None:intergenic 50.0%
TTCCGCAGACGATCAGAAAG+AGG + chr1_2:53474154-53474173 Msa0077030:CDS 50.0%
! GACGATGATTTGCCGCTTGT+TGG + chr1_2:53474287-53474306 Msa0077030:CDS 50.0%
CCGGCCTATTACAAGGAAGA+TGG - chr1_2:53474625-53474644 None:intergenic 50.0%
GGCCGGAAAAAATAGGAGGT+TGG + chr1_2:53474639-53474658 Msa0077030:CDS 50.0%
ACAGCTTTCAGAAGGCGATG+CGG - chr1_2:53474702-53474721 None:intergenic 50.0%
!! GGACCACCATTTCTGGTTCT+AGG - chr1_2:53474791-53474810 None:intergenic 50.0%
ACTAGACGGACCACCATTTC+TGG - chr1_2:53474798-53474817 None:intergenic 50.0%
GACAGCTCTTGTGCACTGTT+TGG - chr1_2:53475562-53475581 None:intergenic 50.0%
TGCAACTCGAGAGAAGAGTC+TGG + chr1_2:53475643-53475662 Msa0077030:three_prime_UTR 50.0%
CTTTGATTGTCCCTCGGCCA+TGG + chr1_2:53473719-53473738 Msa0077030:CDS 55.0%
AACTACTCCCCTGGTCTCCA+TGG - chr1_2:53473739-53473758 None:intergenic 55.0%
AGTAGAGGTGGCGCTAGAAG+TGG - chr1_2:53474048-53474067 None:intergenic 55.0%
CCACGGACAACTCTCAGCTA+CGG - chr1_2:53474531-53474550 None:intergenic 55.0%
CGTAGCTGAGAGTTGTCCGT+GGG + chr1_2:53474529-53474548 Msa0077030:CDS 55.0%
CTGATTCCAGCAGGCCTTCA+TGG + chr1_2:53474761-53474780 Msa0077030:CDS 55.0%
ATTCCAGCAGGCCTTCATGG+TGG + chr1_2:53474764-53474783 Msa0077030:CDS 55.0%
TTCCAGCAGGCCTTCATGGT+GGG + chr1_2:53474765-53474784 Msa0077030:CDS 55.0%
!! TGGTTCTAGGCCCACCATGA+AGG - chr1_2:53474778-53474797 None:intergenic 55.0%
GGTGGGCCTAGAACCAGAAA+TGG + chr1_2:53474782-53474801 Msa0077030:CDS 55.0%
GGGCCTAGAACCAGAAATGG+TGG + chr1_2:53474785-53474804 Msa0077030:CDS 55.0%
GACCTCCTTCTGTCAGAAGG+TGG + chr1_2:53475157-53475176 Msa0077030:intron 55.0%
GACCACCTTCTGACAGAAGG+AGG - chr1_2:53475162-53475181 None:intergenic 55.0%
GGGTTCGAACGATATCAGCC+CGG + chr1_2:53475414-53475433 Msa0077030:intron 55.0%
ACGATATCAGCCCGGCCTTA+AGG + chr1_2:53475422-53475441 Msa0077030:CDS 55.0%
TATCAGCCCGGCCTTAAGGA+TGG + chr1_2:53475426-53475445 Msa0077030:CDS 55.0%
GCACTGTTTGGCCGAAGAGT+GGG - chr1_2:53475550-53475569 None:intergenic 55.0%
TGCACTGTTTGGCCGAAGAG+TGG - chr1_2:53475551-53475570 None:intergenic 55.0%
CCGTAGCTGAGAGTTGTCCG+TGG + chr1_2:53474528-53474547 Msa0077030:CDS 60.0%
TCTGGTGGTCACTGCGACTG+CGG + chr1_2:53474836-53474855 Msa0077030:CDS 60.0%
TCCCTCGGCCATGGAGACCA+GGG + chr1_2:53473728-53473747 Msa0077030:CDS 65.0%
TCACTGCGACTGCGGCGGTT+GGG + chr1_2:53474844-53474863 Msa0077030:CDS 65.0%
GTCCCTCGGCCATGGAGACC+AGG + chr1_2:53473727-53473746 Msa0077030:CDS 70.0%
CCCCTGGTCTCCATGGCCGA+GGG - chr1_2:53473732-53473751 None:intergenic 70.0%
CCCTCGGCCATGGAGACCAG+GGG + chr1_2:53473729-53473748 Msa0077030:CDS 70.0%
TCCCCTGGTCTCCATGGCCG+AGG - chr1_2:53473733-53473752 None:intergenic 70.0%
GGCCCACCATGAAGGCCTGC+TGG - chr1_2:53474770-53474789 None:intergenic 70.0%
GGTGGTCACTGCGACTGCGG+CGG + chr1_2:53474839-53474858 Msa0077030:CDS 70.0%
GTCACTGCGACTGCGGCGGT+TGG + chr1_2:53474843-53474862 Msa0077030:CDS 70.0%
GACTGCGGCGGTTGGGACGA+GGG + chr1_2:53474851-53474870 Msa0077030:CDS 70.0%
CGACTGCGGCGGTTGGGACG+AGG + chr1_2:53474850-53474869 Msa0077030:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 53472380 53475974 53472380 ID=Msa0077030;Name=Msa0077030
chr1_2 mRNA 53472380 53475974 53472380 ID=Msa0077030-mRNA-1;Parent=Msa0077030;Name=Msa0077030-mRNA-1;_AED=0.08;_eAED=0.08;_QI=513|1|1|1|0.5|0.33|3|389|611
chr1_2 exon 53472380 53472836 53472380 ID=Msa0077030-mRNA-1:exon:16533;Parent=Msa0077030-mRNA-1
chr1_2 exon 53473253 53474973 53473253 ID=Msa0077030-mRNA-1:exon:16534;Parent=Msa0077030-mRNA-1
chr1_2 exon 53475415 53475974 53475415 ID=Msa0077030-mRNA-1:exon:16535;Parent=Msa0077030-mRNA-1
chr1_2 five_prime_UTR 53472380 53472836 53472380 ID=Msa0077030-mRNA-1:five_prime_utr;Parent=Msa0077030-mRNA-1
chr1_2 five_prime_UTR 53473253 53473308 53473253 ID=Msa0077030-mRNA-1:five_prime_utr;Parent=Msa0077030-mRNA-1
chr1_2 CDS 53473309 53474973 53473309 ID=Msa0077030-mRNA-1:cds;Parent=Msa0077030-mRNA-1
chr1_2 CDS 53475415 53475585 53475415 ID=Msa0077030-mRNA-1:cds;Parent=Msa0077030-mRNA-1
chr1_2 three_prime_UTR 53475586 53475974 53475586 ID=Msa0077030-mRNA-1:three_prime_utr;Parent=Msa0077030-mRNA-1
Gene Sequence

>Msa0077030

ATGGAAAATGTAAGTTTATGGATTCAAAAAGAGGGTCACTGGAAAAAGGATTCGTTGGTTGACTTGTGCAGTGATAGGGAAGAATTATCTGCTGAACATGAAGATTCTTCTAAGTCTCAGCTAAAGAAGTTGATTAAAAGGTCAAACTCTCATTCATCAATACCTGTAAATGCTATTCAATCACAAATCAGTAAAGTTTTCTTCAAGGGTTTATTTTTCAGACATGTTAGTGGACTTGACAATAGGATTCCAAAGCATATGGTGAGCGCAGACGAGAAATATCTTCGTCGCTGTCTCGAATTGGTACATGACCGTGCAGTAAAAGCAACTCAATGGAACATACCTTTGAGATTAAGAGCAACAAACATAGGGACTTTATCAGAAAGCTTGAATACAGGTGAATCTTTTGTCTTTGATTGTCCCTCGGCCATGGAGACCAGGGGAGTAGTTATAAGTTCTGAAACTGGAGAAGAGTGGACTTTAGGGACAGTCATGGAGAGCAAGAGTATGATAAATATATTGAATAGTGCTTTGCTTAAGAAGTTTGGTGATTCAGATAGAAAGGAGAGTTTGAACAGGATGAACTTTTCTGATGCTGAGGGATTGATATGCTATGATTTTATGGACTCTCCAAGCGGTTTAAGTATATCTTCATCGTATAATCTCAAAAAGGTAACAACACCGTTTGCGCAAAATCATAATTACGGGTCCATTCCTGTCCATAAAAGGCTTGCTTCCACTTCTAGCGCCACCTCTACTAGTTCTGATTGGATGTCTTCAACTTCTACTTTATCTCAGGGAATGATCCAATGTACATGGAAGCGAGGGTTACCTCATTTTATTTTTTCCGCAGACGATCAGAAAGAGGTTTACGTGGCAAAATTGAGGAAGATAGTAGACTCAACAGATGATAAGGCTTTGGACTATGTGTATCAGTTTCACTTAAACAAGGGAAGTCAAAAGAGTCGTGAGATTGCTGACGATGATTTGCCGCTTGTTGGGAAAATGAATGTATCAACGAGTTTCACTCTTTGCTCGAATAGTTGTCGAATAATGGAGACCGATTTCACATTATTCCATAACCTTGAAGTTTATGACAACACATCAGAGTATTCTCATCACATGAAGAACAAGGGGCTAAAGAAAAAGGTGTCACAAGTTTTCAGAACCAATCCTTCATCAAAACACAGAACACTCTCGAAGTTTAACAGATCTGGTGCCGTAGCTGAGAGTTGTCCGTGGGATCCACAAATTGATTTATTAGATGCTAATGTTCCTCCGAATTTTGAGATGGCTTCCATTGTTGTTAAAGACCATCTTCCTTGTAATAGGCCGGAAAAAATAGGAGGTTGGGGCTTAAAATTTCTCAACAAATCTGGTGTAAATAAAACCGCATCGCCTTCTGAAAGCTGTAATCAAAATAATGATGACTGCTCGTCAAGTATGAGCATTCTGATTCCAGCAGGCCTTCATGGTGGGCCTAGAACCAGAAATGGTGGTCCGTCTAGTCTGATAGATAGATGGAGATCTGGTGGTCACTGCGACTGCGGCGGTTGGGACGAGGGATGTCCTCTTACTGTACTTCAGAAAAGATCTAGCATAGTAGAGGTTCTGTCTCAAGTAGATACGAAAGGCGAGTGCATGTCAGTTGATCTAGTTACTCAGGGTTCGAACGATATCAGCCCGGCCTTAAGGATGGTAAATGTTCATGGCGGTCTATATTATATTCACTTTGACCAACCTCTTTCTGCACTACAGTCTTTCTCTATAGCTGTGGCTATAATTCATATGCAAAGTCCCACTCTTCGGCCAAACAGTGCACAAGAGCTGTCATAG
Protein sequence

>Msa0077030

MENVSLWIQKEGHWKKDSLVDLCSDREELSAEHEDSSKSQLKKLIKRSNSHSSIPVNAIQSQISKVFFKGLFFRHVSGLDNRIPKHMVSADEKYLRRCLELVHDRAVKATQWNIPLRLRATNIGTLSESLNTGESFVFDCPSAMETRGVVISSETGEEWTLGTVMESKSMINILNSALLKKFGDSDRKESLNRMNFSDAEGLICYDFMDSPSGLSISSSYNLKKVTTPFAQNHNYGSIPVHKRLASTSSATSTSSDWMSSTSTLSQGMIQCTWKRGLPHFIFSADDQKEVYVAKLRKIVDSTDDKALDYVYQFHLNKGSQKSREIADDDLPLVGKMNVSTSFTLCSNSCRIMETDFTLFHNLEVYDNTSEYSHHMKNKGLKKKVSQVFRTNPSSKHRTLSKFNRSGAVAESCPWDPQIDLLDANVPPNFEMASIVVKDHLPCNRPEKIGGWGLKFLNKSGVNKTASPSESCNQNNDDCSSSMSILIPAGLHGGPRTRNGGPSSLIDRWRSGGHCDCGGWDEGCPLTVLQKRSSIVEVLSQVDTKGECMSVDLVTQGSNDISPALRMVNVHGGLYYIHFDQPLSALQSFSIAVAIIHMQSPTLRPNSAQELS*