AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0169950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169950 MtrunA17_Chr1g0187071 83.493 521 34 3 1 471 1 519 0.0 850
Msa0169950 MtrunA17_Chr1g0187021 72.026 454 123 4 19 470 68 519 0.0 664
Msa0169950 MtrunA17_Chr1g0187051 71.744 453 112 3 19 470 67 504 0.0 659
Msa0169950 MtrunA17_Chr1g0184551 60.394 457 164 5 19 466 63 511 0.0 562
Msa0169950 MtrunA17_Chr7g0260781 63.934 366 118 5 106 466 14 370 2.35e-148 427
Msa0169950 MtrunA17_Chr7g0260791 55.670 97 42 1 19 114 77 173 2.07e-29 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169950 AT1G06750.2 61.269 457 163 5 19 471 73 519 0.0 537
Msa0169950 AT1G06750.3 61.269 457 163 5 19 471 66 512 0.0 536
Msa0169950 AT1G06750.1 61.269 457 163 5 19 471 66 512 0.0 536
Msa0169950 AT2G30630.1 60.667 450 165 4 20 466 81 521 0.0 530
Msa0169950 AT1G04280.2 61.184 456 166 4 19 470 31 479 0.0 519
Msa0169950 AT1G04280.1 61.184 456 166 4 19 470 85 533 0.0 519
Msa0169950 AT2G30630.2 58.599 471 162 6 20 466 81 542 0.0 518
Msa0169950 AT2G30630.3 62.270 326 111 4 20 342 81 397 1.80e-133 391

Find 128 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACAAGTTTGCAATATTT+TGG 0.119289 1_4:+53489632 None:intergenic
CGTTGAAGCTGATGCGTTTA+AGG 0.191956 1_4:-53490318 Msa0169950:CDS
AGAAGAGATTAAAGCAATAA+AGG 0.228358 1_4:-53490992 Msa0169950:CDS
GGACAATAACTGAAAATTAT+TGG 0.237529 1_4:-53489958 Msa0169950:CDS
AATCAAAGGAAAATTATAAA+AGG 0.238536 1_4:-53489904 Msa0169950:CDS
TAATGAAACCAACACTACTA+TGG 0.260895 1_4:-53489348 Msa0169950:CDS
TATATAAAGCTCTTAATTCT+AGG 0.292331 1_4:-53490283 Msa0169950:CDS
CACTAAAATACTGTTATAAC+CGG 0.301116 1_4:+53488929 None:intergenic
TCCAAGCATTTGAGAACTTC+AGG 0.301231 1_4:+53489419 None:intergenic
TTCATTATAAAGTTCGTAGA+TGG 0.319575 1_4:+53489364 None:intergenic
GAGTCCAGTGTTGCTGCTTA+TGG 0.322600 1_4:-53490917 Msa0169950:CDS
GGCTATCTTGCTGTTGTTAG+AGG 0.330163 1_4:-53489827 Msa0169950:CDS
TGTGCCAATCTGCATAATTC+TGG 0.335536 1_4:+53492143 None:intergenic
ACATTGTTCTTTCTCCTTCA+AGG 0.341632 1_4:-53489304 Msa0169950:CDS
CATGCTCGAAACTGCTGAAT+TGG 0.348113 1_4:-53490246 Msa0169950:intron
CTATGGGACCTGGCACTGTT+TGG 0.355413 1_4:-53489331 Msa0169950:CDS
GAAGAGATTAAAGCAATAAA+GGG 0.359600 1_4:-53490991 Msa0169950:CDS
CAGTCAATTGAGTCATTTGT+AGG 0.359752 1_4:-53488887 Msa0169950:three_prime_UTR
TCCAAGGTGAATCTTCAGTT+TGG 0.366743 1_4:+53488476 None:intergenic
CTGTTAGATTTCTTTAGATT+AGG 0.373869 1_4:-53488373 Msa0169950:three_prime_UTR
GATGTATTGTGTGATCTCTT+TGG 0.377369 1_4:-53488774 Msa0169950:three_prime_UTR
GACAATAACTGAAAATTATT+GGG 0.379749 1_4:-53489957 Msa0169950:CDS
AGTCCAGTGTTGCTGCTTAT+GGG 0.381651 1_4:-53490916 Msa0169950:CDS
CTTTGATTCATGCTCTTCTT+CGG 0.382963 1_4:+53489919 None:intergenic
ATGTATTGTGTGATCTCTTT+GGG 0.393518 1_4:-53488773 Msa0169950:three_prime_UTR
CTGCTTATGGGTGGAGGCAT+GGG 0.397062 1_4:-53490904 Msa0169950:CDS
AAAAGTATATTGATGATTCC+CGG 0.407151 1_4:-53488948 Msa0169950:three_prime_UTR
CAAGAAATATTCACAAATAT+AGG 0.408621 1_4:-53490018 Msa0169950:CDS
ATGGGTGGAGGCATGGGATC+TGG 0.410048 1_4:-53490898 Msa0169950:CDS
TTGTACATATATTATTCCTA+TGG 0.415684 1_4:-53489180 Msa0169950:three_prime_UTR
TTGCTGTTGTTAGAGGCATT+AGG 0.419183 1_4:-53489820 Msa0169950:intron
CACAAATATAGGTATCGAAT+GGG 0.422050 1_4:-53490007 Msa0169950:CDS
TCCACGTCACTTGACCTTGA+AGG 0.425410 1_4:+53489290 None:intergenic
CCTTACAAAATTGTTCTAGT+TGG 0.425813 1_4:-53489863 Msa0169950:CDS
ACCTGAAGTTCTCAAATGCT+TGG 0.434910 1_4:-53489420 Msa0169950:CDS
TCTAACAGCTCATAATCAAA+AGG 0.434988 1_4:+53488388 None:intergenic
AAACTGTTTGCTACCTTTGG+CGG 0.438464 1_4:+53489572 None:intergenic
GCTGCTTATGGGTGGAGGCA+TGG 0.440698 1_4:-53490905 Msa0169950:CDS
CTTGATATTGTGGAACAACT+TGG 0.450027 1_4:+53488592 None:intergenic
CAAGTGACGTGGAAAACTTA+AGG 0.452718 1_4:-53489280 Msa0169950:CDS
TGATTTCAGCAACAAGTTGA+AGG 0.458638 1_4:-53488853 Msa0169950:three_prime_UTR
TACAAAAGGTTCCCATGATA+AGG 0.460056 1_4:+53490060 None:intergenic
GCTATAGTTTGCTCTACAAA+AGG 0.465730 1_4:+53490046 None:intergenic
CTAGTTGGTGTGGTTTGTGA+TGG 0.467170 1_4:-53489848 Msa0169950:CDS
ATATAAAGCTCTTAATTCTA+GGG 0.470078 1_4:-53490282 Msa0169950:CDS
TGTATATTTAGTGCTACCAT+TGG 0.476114 1_4:-53489047 Msa0169950:three_prime_UTR
AAGCTTCAATCTTGTTTCCA+AGG 0.481210 1_4:+53488460 None:intergenic
ATGTCATTCCAAACAGTGCC+AGG 0.488602 1_4:+53489323 None:intergenic
TCATGGATGGTACCTTATCA+TGG 0.490150 1_4:-53490072 Msa0169950:CDS
AAGTGACGTGGAAAACTTAA+GGG 0.491229 1_4:-53489279 Msa0169950:CDS
AGAATTATGCAGATTGGCAC+AGG 0.492898 1_4:-53492141 Msa0169950:CDS
GCCAGGTCCCATAGTAGTGT+TGG 0.498688 1_4:+53489340 None:intergenic
GACTAATGATATATGAAGCT+TGG 0.499250 1_4:+53491979 None:intergenic
GGTTCCAGAATTATGCAGAT+TGG 0.501663 1_4:-53492147 Msa0169950:CDS
AGCTTCATATATCATTAGTC+AGG 0.502600 1_4:-53491976 Msa0169950:intron
CAAAATTGTTCTAGTTGGTG+TGG 0.503058 1_4:-53489858 Msa0169950:CDS
GGATATAGAGAAGCTAAAGA+TGG 0.509091 1_4:-53489980 Msa0169950:CDS
ATCAAAGGAAAATTATAAAA+GGG 0.509377 1_4:-53489903 Msa0169950:CDS
CAGAGATGATGCAGCATCAG+TGG 0.510272 1_4:+53490129 None:intergenic
GCAAACTTGTTGACAGTGCA+AGG 0.512689 1_4:-53489622 Msa0169950:CDS
TAATAACAAATAATTAGAGT+TGG 0.518147 1_4:+53489092 None:intergenic
TCACAAATATAGGTATCGAA+TGG 0.521297 1_4:-53490008 Msa0169950:CDS
AATGAAACCAACACTACTAT+GGG 0.525786 1_4:-53489347 Msa0169950:CDS
TGTTGACCTGTGACATGTAC+AGG 0.530371 1_4:-53488987 Msa0169950:three_prime_UTR
CCTAGGTCTGAGCTGTTCAC+TGG 0.530404 1_4:+53488547 None:intergenic
ACATACTGCAGTTAATAGAA+TGG 0.530487 1_4:-53489472 Msa0169950:intron
CCACGCTGATGTTAAACCAT+AGG 0.532118 1_4:+53489164 None:intergenic
GAGAGTAGCAAAGAATCTAA+AGG 0.532305 1_4:-53491040 Msa0169950:CDS
AAACGAGATCCTTGATATTG+TGG 0.533074 1_4:+53488582 None:intergenic
TTGATATTGTGGAACAACTT+GGG 0.533711 1_4:+53488593 None:intergenic
TGTAGAGCAAACTATAGCTA+TGG 0.534802 1_4:-53490041 Msa0169950:CDS
AGTGAGGGTGAAATCACAAC+TGG 0.534858 1_4:-53489684 Msa0169950:CDS
CAAGTTGTTCCACAATATCA+AGG 0.537351 1_4:-53488591 Msa0169950:three_prime_UTR
TCCTTCAAGGTCAAGTGACG+TGG 0.538532 1_4:-53489291 Msa0169950:CDS
CCACCCATAAGCAGCAACAC+TGG 0.545632 1_4:+53490913 None:intergenic
ATGCAGCATCAGTGGAAGAC+TGG 0.545926 1_4:+53490137 None:intergenic
GGAGAGCTATCATGACAAGA+AGG 0.552661 1_4:-53489709 Msa0169950:CDS
GTCTGAAGCTTCAAATGCTG+TGG 0.553322 1_4:-53490342 Msa0169950:CDS
CTAACAGCTCATAATCAAAA+GGG 0.554400 1_4:+53488389 None:intergenic
AGCTGAAAATAAAGCTCCAA+TGG 0.555447 1_4:+53489031 None:intergenic
TTGCTACCTTTGGCGGACCA+CGG 0.558036 1_4:+53489579 None:intergenic
TATTTCCCTGTACATGTCAC+AGG 0.558799 1_4:+53488981 None:intergenic
AGATAGATGATACAAGCTGT+TGG 0.559240 1_4:-53488699 Msa0169950:three_prime_UTR
CATGACAAGAAGGGCAGTGA+GGG 0.561480 1_4:-53489699 Msa0169950:CDS
CGAAGAAGAGCATGAATCAA+AGG 0.561623 1_4:-53489918 Msa0169950:CDS
TCCAAACTGAAGATTCACCT+TGG 0.565333 1_4:-53488477 Msa0169950:three_prime_UTR
AGGATTTGTTGATGCTAGTG+AGG 0.566512 1_4:-53492168 Msa0169950:CDS
ACACATCTTGCACATCGTGC+AGG 0.568196 1_4:-53488659 Msa0169950:three_prime_UTR
AACAGCTCAGACCTAGGTGT+TGG 0.568366 1_4:-53488541 Msa0169950:three_prime_UTR
CTCTCAAAGTTGTGACGTCA+AGG 0.573033 1_4:-53490965 Msa0169950:CDS
TTATTGGGAGCAAGTTAATG+AGG 0.573693 1_4:-53489942 Msa0169950:CDS
GATATAGAGAAGCTAAAGAT+GGG 0.576466 1_4:-53489979 Msa0169950:CDS
CTAGTGACAGCTCTAAATAA+CGG 0.576496 1_4:-53490106 Msa0169950:CDS
CATGGATGGTACCTTATCAT+GGG 0.578376 1_4:-53490071 Msa0169950:CDS
TAACGGACGAGATGTGATCA+TGG 0.578420 1_4:-53490089 Msa0169950:CDS
CCAGTGAACAGCTCAGACCT+AGG 0.580088 1_4:-53488547 Msa0169950:three_prime_UTR
TGATGTCCGTGGTCCGCCAA+AGG 0.580988 1_4:-53489585 Msa0169950:intron
TAACATCAGCGTGGGAAACA+AGG 0.581304 1_4:-53489155 Msa0169950:three_prime_UTR
ATCTATCAATATCTAGCCAA+CGG 0.583112 1_4:-53492083 Msa0169950:CDS
GTGTTGCTGCTTATGGGTGG+AGG 0.584402 1_4:-53490910 Msa0169950:CDS
CAGTTTCGAGCATGTCGTCA+TGG 0.587215 1_4:+53490255 None:intergenic
CTATGGTTTAACATCAGCGT+GGG 0.589741 1_4:-53489163 Msa0169950:three_prime_UTR
CCGCCGTTGTCCACAGTGAG+AGG 0.590571 1_4:-53490939 Msa0169950:CDS
TGAATTAGGGTCCTCTCCGT+TGG 0.591979 1_4:+53492067 None:intergenic
GAGAGCTATCATGACAAGAA+GGG 0.596487 1_4:-53489708 Msa0169950:CDS
ACAAATATAGGTATCGAATG+GGG 0.597771 1_4:-53490006 Msa0169950:CDS
CCAGTGTTGCTGCTTATGGG+TGG 0.605731 1_4:-53490913 Msa0169950:CDS
AAGAGTACTCAACAATTACA+TGG 0.607289 1_4:+53488318 None:intergenic
TAGATGATACAAGCTGTTGG+AGG 0.612887 1_4:-53488696 Msa0169950:three_prime_UTR
GGACGAGATGTGATCATGGA+TGG 0.618281 1_4:-53490085 Msa0169950:CDS
ACCAACACTACTATGGGACC+TGG 0.618787 1_4:-53489341 Msa0169950:CDS
TATAAAGCTCTTAATTCTAG+GGG 0.619091 1_4:-53490281 Msa0169950:CDS
TGATTCTCACAATCTACAAG+TGG 0.622599 1_4:-53489444 Msa0169950:CDS
CAGGAAGATGAAGAAAGAAG+AGG 0.629284 1_4:-53488640 Msa0169950:three_prime_UTR
CAAATATAGGTATCGAATGG+GGG 0.646022 1_4:-53490005 Msa0169950:CDS
GATAAGCAGTTTAAATACTG+AGG 0.646162 1_4:-53489393 Msa0169950:CDS
ACACTGGACTCCTCTCACTG+TGG 0.664444 1_4:+53490929 None:intergenic
AATGAAAAGCGAAATAACTG+AGG 0.665453 1_4:+53492006 None:intergenic
CCTATGGTTTAACATCAGCG+TGG 0.669549 1_4:-53489164 Msa0169950:three_prime_UTR
ACTAAAATACTGTTATAACC+GGG 0.672367 1_4:+53488930 None:intergenic
TCATGACAAGAAGGGCAGTG+AGG 0.676129 1_4:-53489700 Msa0169950:CDS
TCAAACAACATACAGCAACA+AGG 0.682774 1_4:-53493651 Msa0169950:intron
GTTGACCTGTGACATGTACA+GGG 0.683122 1_4:-53488986 Msa0169950:three_prime_UTR
CCTCTCACTGTGGACAACGG+CGG 0.688206 1_4:+53490939 None:intergenic
AGTGCAGAAAACCAACACCT+AGG 0.696507 1_4:+53488530 None:intergenic
TATTACACAACTGATGTCCG+TGG 0.698004 1_4:-53489596 Msa0169950:CDS
ACTCCTCTCACTGTGGACAA+CGG 0.700813 1_4:+53490936 None:intergenic
TCAATATCTAGCCAACGGAG+AGG 0.708193 1_4:-53492078 Msa0169950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATAGAAAAATGTAAA+TGG + chr1_4:53490802-53490821 None:intergenic 10.0%
!! TTATAAAATGGATAAATATT+TGG - chr1_4:53491245-53491264 Msa0169950:intron 10.0%
!!! ATATAGAATTTTTTTTGGTA+AGG + chr1_4:53488913-53488932 None:intergenic 15.0%
!! TTACCAAAAAAAATTCTATA+TGG - chr1_4:53488912-53488931 Msa0169950:three_prime_UTR 15.0%
!!! TTCTTATTTATTTTGAAATC+TGG - chr1_4:53489385-53489404 Msa0169950:CDS 15.0%
!! ATTATACAAAATAAAGGTTT+GGG + chr1_4:53489433-53489452 None:intergenic 15.0%
!! TAGTTGATTATACAAAATAA+AGG + chr1_4:53489439-53489458 None:intergenic 15.0%
!! AAGAAATAGTAAAAACAAAA+TGG - chr1_4:53489694-53489713 Msa0169950:CDS 15.0%
!!! ATATTTTTGAGATGTATTTT+CGG + chr1_4:53490592-53490611 None:intergenic 15.0%
!!! AATTACTCAATGTTTTTTAA+AGG + chr1_4:53490828-53490847 None:intergenic 15.0%
!!! ATAAACTCATTTTCTTAATT+TGG + chr1_4:53491229-53491248 None:intergenic 15.0%
!! AAGAAAATGAGTTTATAAAA+TGG - chr1_4:53491233-53491252 Msa0169950:intron 15.0%
!!! TATTTCTGTAAATTCATTAA+TGG - chr1_4:53491321-53491340 Msa0169950:intron 15.0%
!! AATCAAAGGAAAATTATAAA+AGG - chr1_4:53492081-53492100 Msa0169950:CDS 15.0%
!! ATCAAAGGAAAATTATAAAA+GGG - chr1_4:53492082-53492101 Msa0169950:CDS 15.0%
!!! TATTAGTTATTGTTTTTTGA+TGG + chr1_4:53492756-53492775 None:intergenic 15.0%
!! TAATAACAAATAATTAGAGT+TGG + chr1_4:53492896-53492915 None:intergenic 15.0%
!! AAATATTCAAGATAGAATCA+TGG + chr1_4:53488825-53488844 None:intergenic 20.0%
!! TATCCAATTTCAAATAACTT+TGG - chr1_4:53489081-53489100 Msa0169950:three_prime_UTR 20.0%
!!! TATCCAAAGTTATTTGAAAT+TGG + chr1_4:53489087-53489106 None:intergenic 20.0%
!! GATTATACAAAATAAAGGTT+TGG + chr1_4:53489434-53489453 None:intergenic 20.0%
!! TCTATCATTAAATGAAACAT+TGG - chr1_4:53489641-53489660 Msa0169950:CDS 20.0%
!!! ATTTTGCATATAGTGAATTA+GGG + chr1_4:53489934-53489953 None:intergenic 20.0%
!!! AATTTTGCATATAGTGAATT+AGG + chr1_4:53489935-53489954 None:intergenic 20.0%
!! TTCATTTATCAACTTTATCA+GGG + chr1_4:53490422-53490441 None:intergenic 20.0%
!! ATTCATTTATCAACTTTATC+AGG + chr1_4:53490423-53490442 None:intergenic 20.0%
!!! ACATCTCAAAAATATTCTTT+TGG - chr1_4:53490597-53490616 Msa0169950:intron 20.0%
!!! AAAATGTAAATGGTTTTAAC+TGG + chr1_4:53490792-53490811 None:intergenic 20.0%
!! TTAAGTTTCTAATAAGTACA+AGG - chr1_4:53490864-53490883 Msa0169950:intron 20.0%
!! ATATCTTATACAATACACTA+AGG - chr1_4:53491489-53491508 Msa0169950:intron 20.0%
!!! ACTTATCATGTGTTAAATTT+TGG - chr1_4:53491553-53491572 Msa0169950:intron 20.0%
!! TTTCATCCTTGATTATTAAA+TGG - chr1_4:53491602-53491621 Msa0169950:intron 20.0%
!! TATATAAAGCTCTTAATTCT+AGG - chr1_4:53491702-53491721 Msa0169950:intron 20.0%
!! ATATAAAGCTCTTAATTCTA+GGG - chr1_4:53491703-53491722 Msa0169950:intron 20.0%
!!! TTTTGATGACAATCTAATTA+GGG + chr1_4:53491814-53491833 None:intergenic 20.0%
!!! ATTTTGATGACAATCTAATT+AGG + chr1_4:53491815-53491834 None:intergenic 20.0%
!! CAAGAAATATTCACAAATAT+AGG - chr1_4:53491967-53491986 Msa0169950:intron 20.0%
!! GACAATAACTGAAAATTATT+GGG - chr1_4:53492028-53492047 Msa0169950:CDS 20.0%
!!! TGACATTTTTCATTGAAATT+TGG - chr1_4:53492250-53492269 Msa0169950:intron 20.0%
!! TTAGCATTAATATTGCAAAA+TGG - chr1_4:53492475-53492494 Msa0169950:intron 20.0%
!! TTGTACATATATTATTCCTA+TGG - chr1_4:53492805-53492824 Msa0169950:intron 20.0%
!!! TAAGTGCATGTTTTTATTGT+CGG - chr1_4:53488720-53488739 Msa0169950:three_prime_UTR 25.0%
! GAAACTTACATATAGACAAA+AGG + chr1_4:53488869-53488888 None:intergenic 25.0%
!!! TAGAATTTTTTTTGGTAAGG+AGG + chr1_4:53488910-53488929 None:intergenic 25.0%
! CATGTTATATAACAAGAGTT+GGG + chr1_4:53488938-53488957 None:intergenic 25.0%
! ATTGGAGTAATGATTTCTAA+CGG + chr1_4:53488991-53489010 None:intergenic 25.0%
!! GGATAAATTTTGCTTTCTAA+GGG + chr1_4:53489066-53489085 None:intergenic 25.0%
!! TGGATAAATTTTGCTTTCTA+AGG + chr1_4:53489067-53489086 None:intergenic 25.0%
!!! AAATAAGAAAAAAGTGCTGT+TGG + chr1_4:53489374-53489393 None:intergenic 25.0%
!! ACTTTTTAACACCAATCATA+AGG + chr1_4:53489482-53489501 None:intergenic 25.0%
!!! TTATGATTGGTGTTAAAAAG+TGG - chr1_4:53489481-53489500 Msa0169950:intron 25.0%
!! TGAAATGAAAAAGACTAGTT+AGG - chr1_4:53489506-53489525 Msa0169950:intron 25.0%
! ATTAAAGTCTTGGATATGTT+TGG + chr1_4:53489584-53489603 None:intergenic 25.0%
! TGTGGTTTAAATTAAAGTCT+TGG + chr1_4:53489594-53489613 None:intergenic 25.0%
!! TTAAACCACATGTCTTTTAT+TGG - chr1_4:53489604-53489623 Msa0169950:CDS 25.0%
! ATTAAATGAAACATTGGAGT+AGG - chr1_4:53489647-53489666 Msa0169950:CDS 25.0%
! AACGAGAAAAGTAAATGAAT+TGG + chr1_4:53490060-53490079 None:intergenic 25.0%
! AACTATAAAAAGAGAAAGTG+AGG + chr1_4:53490301-53490320 None:intergenic 25.0%
! AGTCATATAAAAAAACTGCA+TGG + chr1_4:53490499-53490518 None:intergenic 25.0%
! TTCGATATAAATTTACCTTG+TGG + chr1_4:53490626-53490645 None:intergenic 25.0%
!!! TCGAAGCCAATTATTTTTAA+CGG - chr1_4:53490711-53490730 Msa0169950:intron 25.0%
! CATATTAGTGAATAATGATG+TGG + chr1_4:53490895-53490914 None:intergenic 25.0%
! CACATCATTATTCACTAATA+TGG - chr1_4:53490893-53490912 Msa0169950:CDS 25.0%
! AGAAGAGATTAAAGCAATAA+AGG - chr1_4:53490993-53491012 Msa0169950:CDS 25.0%
! GAAGAGATTAAAGCAATAAA+GGG - chr1_4:53490994-53491013 Msa0169950:CDS 25.0%
! CATAGAATTGAGAGTTTAAA+GGG + chr1_4:53491301-53491320 None:intergenic 25.0%
! ACATAGAATTGAGAGTTTAA+AGG + chr1_4:53491302-53491321 None:intergenic 25.0%
! TATGCTAACAAGTATTCTTA+GGG + chr1_4:53491469-53491488 None:intergenic 25.0%
! TTATGCTAACAAGTATTCTT+AGG + chr1_4:53491470-53491489 None:intergenic 25.0%
! TTTAACACATGATAAGTAAG+AGG + chr1_4:53491550-53491569 None:intergenic 25.0%
! CCAAAACCATTTAATAATCA+AGG + chr1_4:53491611-53491630 None:intergenic 25.0%
!! CCTTGATTATTAAATGGTTT+TGG - chr1_4:53491608-53491627 Msa0169950:intron 25.0%
! TATAAAGCTCTTAATTCTAG+GGG - chr1_4:53491704-53491723 Msa0169950:intron 25.0%
! ATTGTCATCAAAATCTAAAC+AGG - chr1_4:53491821-53491840 Msa0169950:intron 25.0%
! GGACAATAACTGAAAATTAT+TGG - chr1_4:53492027-53492046 Msa0169950:CDS 25.0%
!! TTTTTCATTGAAATTTGGAC+AGG - chr1_4:53492255-53492274 Msa0169950:intron 25.0%
!! TCAACAAGTTTGCAATATTT+TGG + chr1_4:53492356-53492375 None:intergenic 25.0%
! TTCATTATAAAGTTCGTAGA+TGG + chr1_4:53492624-53492643 None:intergenic 25.0%
!!! GGTTTTTTCTATTTTCAGAA+TGG + chr1_4:53492735-53492754 None:intergenic 25.0%
!!! CTTTATTTTCAGCTCTAATT+TGG - chr1_4:53492963-53492982 Msa0169950:intron 25.0%
!! AAAAGTATATTGATGATTCC+CGG - chr1_4:53493037-53493056 Msa0169950:intron 25.0%
! ACTAAAATACTGTTATAACC+GGG + chr1_4:53493058-53493077 None:intergenic 25.0%
! CACTAAAATACTGTTATAAC+CGG + chr1_4:53493059-53493078 None:intergenic 25.0%
!!! ACAGTATTTTAGTGTAGTTT+TGG - chr1_4:53493065-53493084 Msa0169950:intron 25.0%
! CTGTTAGATTTCTTTAGATT+AGG - chr1_4:53493612-53493631 Msa0169950:intron 25.0%
ATATCTCAATTTGGGCAATA+CGG + chr1_4:53488480-53488499 None:intergenic 30.0%
GTGAGAGAATATCTCAATTT+GGG + chr1_4:53488488-53488507 None:intergenic 30.0%
AGTGAGAGAATATCTCAATT+TGG + chr1_4:53488489-53488508 None:intergenic 30.0%
AAAGTAAGTAGGAGAAGTTA+AGG + chr1_4:53488538-53488557 None:intergenic 30.0%
GTTGGTATATACATGTTTAG+TGG + chr1_4:53488696-53488715 None:intergenic 30.0%
AAAACATGCACTTACTAAGT+TGG + chr1_4:53488714-53488733 None:intergenic 30.0%
!! TGTTTTTATTGTCGGTGAAT+TGG - chr1_4:53488728-53488747 Msa0169950:three_prime_UTR 30.0%
TGTAGCTTTCCTTAAAATCA+AGG - chr1_4:53488792-53488811 Msa0169950:three_prime_UTR 30.0%
ATAGACAAAAGGAAGATTTC+AGG + chr1_4:53488858-53488877 None:intergenic 30.0%
TTGTCTATATGTAAGTTTCC+AGG - chr1_4:53488870-53488889 Msa0169950:three_prime_UTR 30.0%
!!! GGGCCATATAGAATTTTTTT+TGG + chr1_4:53488918-53488937 None:intergenic 30.0%
CCATGTTATATAACAAGAGT+TGG + chr1_4:53488939-53488958 None:intergenic 30.0%
! CCAACTCTTGTTATATAACA+TGG - chr1_4:53488936-53488955 Msa0169950:three_prime_UTR 30.0%
TTGGAGTAATGATTTCTAAC+GGG + chr1_4:53488990-53489009 None:intergenic 30.0%
AGGTTGAAAACATGAAACAA+GGG + chr1_4:53489014-53489033 None:intergenic 30.0%
AAGGTTGAAAACATGAAACA+AGG + chr1_4:53489015-53489034 None:intergenic 30.0%
!! TTGATACTAATTTGCTGACA+AGG + chr1_4:53489034-53489053 None:intergenic 30.0%
GTATAGTGAAATTGAATGGA+AGG + chr1_4:53489554-53489573 None:intergenic 30.0%
GATGGTATAGTGAAATTGAA+TGG + chr1_4:53489558-53489577 None:intergenic 30.0%
TGATGATAATCTCAAAGTAC+AGG - chr1_4:53489736-53489755 Msa0169950:intron 30.0%
! CTTTTCATGAATTGAATCCA+TGG - chr1_4:53489761-53489780 Msa0169950:intron 30.0%
ATCTATCAATATCTAGCCAA+CGG - chr1_4:53489902-53489921 Msa0169950:CDS 30.0%
AATGAAAAGCGAAATAACTG+AGG + chr1_4:53489982-53490001 None:intergenic 30.0%
!! TCAGTTATTTCGCTTTTCAT+TGG - chr1_4:53489981-53490000 Msa0169950:CDS 30.0%
GACTAATGATATATGAAGCT+TGG + chr1_4:53490009-53490028 None:intergenic 30.0%
AGCTTCATATATCATTAGTC+AGG - chr1_4:53490009-53490028 Msa0169950:CDS 30.0%
!!! TTTCGGTGGTTAGTTTTTAT+TGG + chr1_4:53490116-53490135 None:intergenic 30.0%
!!! TGTTTTTCGGGTGTTTATTT+GGG + chr1_4:53490327-53490346 None:intergenic 30.0%
! ATGTTGGGATAAGTGTTTTT+CGG + chr1_4:53490340-53490359 None:intergenic 30.0%
GTGGAATTCAAATGAATGTT+GGG + chr1_4:53490355-53490374 None:intergenic 30.0%
AGTGGAATTCAAATGAATGT+TGG + chr1_4:53490356-53490375 None:intergenic 30.0%
!!! GTTTTGATTCTCTCAATCAT+AGG - chr1_4:53490546-53490565 Msa0169950:intron 30.0%
!! TTTGAGATGTATTTTCGGTT+GGG + chr1_4:53490587-53490606 None:intergenic 30.0%
!!! TTTTGAGATGTATTTTCGGT+TGG + chr1_4:53490588-53490607 None:intergenic 30.0%
!! TAATATGGTGCTATGTTTAC+AGG - chr1_4:53490908-53490927 Msa0169950:CDS 30.0%
!! AATATGGTGCTATGTTTACA+GGG - chr1_4:53490909-53490928 Msa0169950:CDS 30.0%
ACAATGGTATTGTAATGAAG+TGG + chr1_4:53491167-53491186 None:intergenic 30.0%
! TTTCTTAATTTGGACACACA+TGG + chr1_4:53491219-53491238 None:intergenic 30.0%
! TTTCCTATAGACATTGGTTA+AGG - chr1_4:53491358-53491377 Msa0169950:intron 30.0%
ATTCCTTAACCAATGTCTAT+AGG + chr1_4:53491364-53491383 None:intergenic 30.0%
! TATTCTTAGGGCATTTGTTA+AGG + chr1_4:53491457-53491476 None:intergenic 30.0%
!!! TTCATAGTTTTTTTCGTTGG+GGG + chr1_4:53491527-53491546 None:intergenic 30.0%
!!! GTTCATAGTTTTTTTCGTTG+GGG + chr1_4:53491528-53491547 None:intergenic 30.0%
!!! GGTTCATAGTTTTTTTCGTT+GGG + chr1_4:53491529-53491548 None:intergenic 30.0%
!!! AGGTTCATAGTTTTTTTCGT+TGG + chr1_4:53491530-53491549 None:intergenic 30.0%
TAGAAGAAAAGAAAAGCGAA+TGG + chr1_4:53491581-53491600 None:intergenic 30.0%
!! TCACAAATATAGGTATCGAA+TGG - chr1_4:53491977-53491996 Msa0169950:CDS 30.0%
!! CACAAATATAGGTATCGAAT+GGG - chr1_4:53491978-53491997 Msa0169950:CDS 30.0%
!! ACAAATATAGGTATCGAATG+GGG - chr1_4:53491979-53491998 Msa0169950:CDS 30.0%
GATATAGAGAAGCTAAAGAT+GGG - chr1_4:53492006-53492025 Msa0169950:CDS 30.0%
! AACAATTTTGTAAGGCTTTC+GGG + chr1_4:53492117-53492136 None:intergenic 30.0%
! GAACAATTTTGTAAGGCTTT+CGG + chr1_4:53492118-53492137 None:intergenic 30.0%
! CCAACTAGAACAATTTTGTA+AGG + chr1_4:53492125-53492144 None:intergenic 30.0%
CCTTACAAAATTGTTCTAGT+TGG - chr1_4:53492122-53492141 Msa0169950:CDS 30.0%
! AACAGTTTTGCATACTATCT+TGG - chr1_4:53492428-53492447 Msa0169950:intron 30.0%
ATTCTATTAACTGCAGTATG+TGG + chr1_4:53492514-53492533 None:intergenic 30.0%
ACATACTGCAGTTAATAGAA+TGG - chr1_4:53492513-53492532 Msa0169950:intron 30.0%
GATAAGCAGTTTAAATACTG+AGG - chr1_4:53492592-53492611 Msa0169950:intron 30.0%
TAATGAAACCAACACTACTA+TGG - chr1_4:53492637-53492656 Msa0169950:intron 30.0%
AATGAAACCAACACTACTAT+GGG - chr1_4:53492638-53492657 Msa0169950:intron 30.0%
TGTATATTTAGTGCTACCAT+TGG - chr1_4:53492938-53492957 Msa0169950:intron 30.0%
ATGTATTGTGTGATCTCTTT+GGG - chr1_4:53493212-53493231 Msa0169950:intron 30.0%
TTGATATTGTGGAACAACTT+GGG + chr1_4:53493395-53493414 None:intergenic 30.0%
CTAACAGCTCATAATCAAAA+GGG + chr1_4:53493599-53493618 None:intergenic 30.0%
TCTAACAGCTCATAATCAAA+AGG + chr1_4:53493600-53493619 None:intergenic 30.0%
!! AAGAGTACTCAACAATTACA+TGG + chr1_4:53493670-53493689 None:intergenic 30.0%
TCAAACAACATACAGCAACA+AGG - chr1_4:53488334-53488353 Msa0169950:three_prime_UTR 35.0%
GAGATATTCTCTCACTATGT+TGG - chr1_4:53488493-53488512 Msa0169950:three_prime_UTR 35.0%
! ACACTTTCAATCAGAAGTGT+CGG - chr1_4:53488665-53488684 Msa0169950:three_prime_UTR 35.0%
AGCTTTCCTTAAAATCAAGG+TGG - chr1_4:53488795-53488814 Msa0169950:three_prime_UTR 35.0%
TCTATATGTAAGTTTCCAGG+TGG - chr1_4:53488873-53488892 Msa0169950:three_prime_UTR 35.0%
!!! TTTTTTTTGGTAAGGAGGAG+TGG + chr1_4:53488905-53488924 None:intergenic 35.0%
TTAACTGTTTACATGGCTAC+AGG + chr1_4:53488962-53488981 None:intergenic 35.0%
TGGAGTAATGATTTCTAACG+GGG + chr1_4:53488989-53489008 None:intergenic 35.0%
GAAAACATGAAACAAGGGAT+TGG + chr1_4:53489009-53489028 None:intergenic 35.0%
ACTTGTCTATTATCACCCAA+CGG + chr1_4:53489220-53489239 None:intergenic 35.0%
CTACTATTGCTGAAAGCTTA+GGG + chr1_4:53489256-53489275 None:intergenic 35.0%
TCTACTATTGCTGAAAGCTT+AGG + chr1_4:53489257-53489276 None:intergenic 35.0%
! GTGATGAAAAGCCTTATGAT+TGG - chr1_4:53489468-53489487 Msa0169950:intron 35.0%
CTTGGATATGTTTGGATTGA+TGG + chr1_4:53489576-53489595 None:intergenic 35.0%
GATTGCCAATAAAAGACATG+TGG + chr1_4:53489612-53489631 None:intergenic 35.0%
!!! GTCCATTTGTTTTTTCAGCT+AGG - chr1_4:53489789-53489808 Msa0169950:intron 35.0%
TGCCTAGCTGAAAAAACAAA+TGG + chr1_4:53489794-53489813 None:intergenic 35.0%
!!! GTTTTTTCAGCTAGGCAAAT+AGG - chr1_4:53489797-53489816 Msa0169950:intron 35.0%
! TTTAGTTTCTGCAGTGTATG+GGG + chr1_4:53490151-53490170 None:intergenic 35.0%
! CTTTAGTTTCTGCAGTGTAT+GGG + chr1_4:53490152-53490171 None:intergenic 35.0%
! ACTTTAGTTTCTGCAGTGTA+TGG + chr1_4:53490153-53490172 None:intergenic 35.0%
! GTGTTTGGAACTTGTTTATG+TGG + chr1_4:53490208-53490227 None:intergenic 35.0%
!! GGTTTTGATGGTTTTTTGGA+GGG + chr1_4:53490256-53490275 None:intergenic 35.0%
!! AAAGTGAGGTGTTGTTATAG+GGG + chr1_4:53490287-53490306 None:intergenic 35.0%
!! GAAAGTGAGGTGTTGTTATA+GGG + chr1_4:53490288-53490307 None:intergenic 35.0%
!! AGAAAGTGAGGTGTTGTTAT+AGG + chr1_4:53490289-53490308 None:intergenic 35.0%
!!! GTGTTTTTCGGGTGTTTATT+TGG + chr1_4:53490328-53490347 None:intergenic 35.0%
! TGTTGGGATAAGTGTTTTTC+GGG + chr1_4:53490339-53490358 None:intergenic 35.0%
GGTGGACCGTTAAAAATAAT+TGG + chr1_4:53490720-53490739 None:intergenic 35.0%
CACAATTAGTCGACTGTAAT+CGG + chr1_4:53490741-53490760 None:intergenic 35.0%
GAGAGTAGCAAAGAATCTAA+AGG - chr1_4:53490945-53490964 Msa0169950:CDS 35.0%
GTAATGAAGTGGTAGAGTTA+AGG + chr1_4:53491156-53491175 None:intergenic 35.0%
CAACTGATGGAATTGAACAA+TGG + chr1_4:53491183-53491202 None:intergenic 35.0%
TTCAGATCATTTGCAACTGA+TGG + chr1_4:53491196-53491215 None:intergenic 35.0%
AACGAGTTTCCTATAGACAT+TGG - chr1_4:53491352-53491371 Msa0169950:intron 35.0%
!!! TCATAGTTTTTTTCGTTGGG+GGG + chr1_4:53491526-53491545 None:intergenic 35.0%
!!! ATGGTTTTGGCAGATCATTT+TGG - chr1_4:53491621-53491640 Msa0169950:intron 35.0%
!! CTAGTGACAGCTCTAAATAA+CGG - chr1_4:53491879-53491898 Msa0169950:intron 35.0%
TACAAAAGGTTCCCATGATA+AGG + chr1_4:53491928-53491947 None:intergenic 35.0%
!! GCTATAGTTTGCTCTACAAA+AGG + chr1_4:53491942-53491961 None:intergenic 35.0%
TGTAGAGCAAACTATAGCTA+TGG - chr1_4:53491944-53491963 Msa0169950:intron 35.0%
!! CAAATATAGGTATCGAATGG+GGG - chr1_4:53491980-53491999 Msa0169950:CDS 35.0%
GGATATAGAGAAGCTAAAGA+TGG - chr1_4:53492005-53492024 Msa0169950:CDS 35.0%
TTATTGGGAGCAAGTTAATG+AGG - chr1_4:53492043-53492062 Msa0169950:CDS 35.0%
CTTTGATTCATGCTCTTCTT+CGG + chr1_4:53492069-53492088 None:intergenic 35.0%
! CAAAATTGTTCTAGTTGGTG+TGG - chr1_4:53492127-53492146 Msa0169950:CDS 35.0%
TGATTCTCACAATCTACAAG+TGG - chr1_4:53492541-53492560 Msa0169950:intron 35.0%
ACATTGTTCTTTCTCCTTCA+AGG - chr1_4:53492681-53492700 Msa0169950:intron 35.0%
AAGTGACGTGGAAAACTTAA+GGG - chr1_4:53492706-53492725 Msa0169950:intron 35.0%
!! CTACAACGAAGTCATTTTCT+TGG - chr1_4:53492856-53492875 Msa0169950:intron 35.0%
AGCTGAAAATAAAGCTCCAA+TGG + chr1_4:53492957-53492976 None:intergenic 35.0%
!!! AGTGTAGTTTTGGAGTCATT+TGG - chr1_4:53493075-53493094 Msa0169950:intron 35.0%
CAGTCAATTGAGTCATTTGT+AGG - chr1_4:53493098-53493117 Msa0169950:intron 35.0%
! TGATTTCAGCAACAAGTTGA+AGG - chr1_4:53493132-53493151 Msa0169950:intron 35.0%
! CTGAGAAGACATTTTGAACT+TGG - chr1_4:53493168-53493187 Msa0169950:intron 35.0%
GATGTATTGTGTGATCTCTT+TGG - chr1_4:53493211-53493230 Msa0169950:intron 35.0%
AGATAGATGATACAAGCTGT+TGG - chr1_4:53493286-53493305 Msa0169950:intron 35.0%
CTTGATATTGTGGAACAACT+TGG + chr1_4:53493396-53493415 None:intergenic 35.0%
CAAGTTGTTCCACAATATCA+AGG - chr1_4:53493394-53493413 Msa0169950:intron 35.0%
AAACGAGATCCTTGATATTG+TGG + chr1_4:53493406-53493425 None:intergenic 35.0%
! AAGCTTCAATCTTGTTTCCA+AGG + chr1_4:53493528-53493547 None:intergenic 35.0%
! CAAGGTACTACTAGTAGTGT+TGG - chr1_4:53488352-53488371 Msa0169950:three_prime_UTR 40.0%
ATGTAACTGGGGAATGATCT+TGG + chr1_4:53488443-53488462 None:intergenic 40.0%
GTGTCGTGTGTAAAGTAAGT+AGG + chr1_4:53488549-53488568 None:intergenic 40.0%
TTCATCGTAACCACAAGTGT+CGG - chr1_4:53488610-53488629 Msa0169950:three_prime_UTR 40.0%
! TTCTGATTGAAAGTGTGTCC+CGG + chr1_4:53488661-53488680 None:intergenic 40.0%
! TACAGTGTCACTGTAGTTCA+TGG - chr1_4:53488758-53488777 Msa0169950:three_prime_UTR 40.0%
! GGAAGATTTCAGGTAACTAC+AGG + chr1_4:53488848-53488867 None:intergenic 40.0%
GGGCTGATTAACTGTTTACA+TGG + chr1_4:53488969-53488988 None:intergenic 40.0%
ACATTTGAGCCAAGTCCAAA+TGG + chr1_4:53489173-53489192 None:intergenic 40.0%
GACTTGGCTCAAATGTTTGT+TGG - chr1_4:53489177-53489196 Msa0169950:three_prime_UTR 40.0%
AAACAAATGGACAGTAGCCA+TGG + chr1_4:53489781-53489800 None:intergenic 40.0%
!! AGGATTTGTTGATGCTAGTG+AGG - chr1_4:53489817-53489836 Msa0169950:intron 40.0%
GGTTCCAGAATTATGCAGAT+TGG - chr1_4:53489838-53489857 Msa0169950:CDS 40.0%
TGTGCCAATCTGCATAATTC+TGG + chr1_4:53489845-53489864 None:intergenic 40.0%
AGAATTATGCAGATTGGCAC+AGG - chr1_4:53489844-53489863 Msa0169950:CDS 40.0%
TTAGTTTCTGCAGTGTATGG+GGG + chr1_4:53490150-53490169 None:intergenic 40.0%
CAAAACCTCAAACTGTATCG+TGG - chr1_4:53490178-53490197 Msa0169950:intron 40.0%
!!! GATGGTTTTTTGGAGGGTTT+TGG + chr1_4:53490250-53490269 None:intergenic 40.0%
!! CGGTTTTGATGGTTTTTTGG+AGG + chr1_4:53490257-53490276 None:intergenic 40.0%
!! GGTCGGTTTTGATGGTTTTT+TGG + chr1_4:53490260-53490279 None:intergenic 40.0%
!! GTTGTTATAGGGGTTTTGGT+CGG + chr1_4:53490277-53490296 None:intergenic 40.0%
!!! AGGTGTTGTTATAGGGGTTT+TGG + chr1_4:53490281-53490300 None:intergenic 40.0%
!! ACTTTATCAGGGCCTTGTTA+TGG + chr1_4:53490411-53490430 None:intergenic 40.0%
! ATGTATTTTCGGTTGGGACT+CGG + chr1_4:53490581-53490600 None:intergenic 40.0%
! ATATTCTTTTGGCAGCCACA+AGG - chr1_4:53490608-53490627 Msa0169950:intron 40.0%
AATTAGTCGACTGTAATCGG+TGG + chr1_4:53490738-53490757 None:intergenic 40.0%
!!! ATAGTTTTTTTCGTTGGGGG+GGG + chr1_4:53491524-53491543 None:intergenic 40.0%
!!! CATAGTTTTTTTCGTTGGGG+GGG + chr1_4:53491525-53491544 None:intergenic 40.0%
TCATGGATGGTACCTTATCA+TGG - chr1_4:53491913-53491932 Msa0169950:intron 40.0%
CATGGATGGTACCTTATCAT+GGG - chr1_4:53491914-53491933 Msa0169950:intron 40.0%
! CGAAGAAGAGCATGAATCAA+AGG - chr1_4:53492067-53492086 Msa0169950:CDS 40.0%
!! TTGCTGTTGTTAGAGGCATT+AGG - chr1_4:53492165-53492184 Msa0169950:CDS 40.0%
GAGAGCTATCATGACAAGAA+GGG - chr1_4:53492277-53492296 Msa0169950:intron 40.0%
TATTACACAACTGATGTCCG+TGG - chr1_4:53492389-53492408 Msa0169950:intron 40.0%
! AAACTGTTTGCTACCTTTGG+CGG + chr1_4:53492416-53492435 None:intergenic 40.0%
! GCAAAACTGTTTGCTACCTT+TGG + chr1_4:53492419-53492438 None:intergenic 40.0%
ACCTGAAGTTCTCAAATGCT+TGG - chr1_4:53492565-53492584 Msa0169950:intron 40.0%
TCCAAGCATTTGAGAACTTC+AGG + chr1_4:53492569-53492588 None:intergenic 40.0%
CAAGTGACGTGGAAAACTTA+AGG - chr1_4:53492705-53492724 Msa0169950:intron 40.0%
CTATGGTTTAACATCAGCGT+GGG - chr1_4:53492822-53492841 Msa0169950:intron 40.0%
TATTTCCCTGTACATGTCAC+AGG + chr1_4:53493007-53493026 None:intergenic 40.0%
TAGATGATACAAGCTGTTGG+AGG - chr1_4:53493289-53493308 Msa0169950:intron 40.0%
CAGGAAGATGAAGAAAGAAG+AGG - chr1_4:53493345-53493364 Msa0169950:intron 40.0%
TCCAAACTGAAGATTCACCT+TGG - chr1_4:53493508-53493527 Msa0169950:intron 40.0%
TCCAAGGTGAATCTTCAGTT+TGG + chr1_4:53493512-53493531 None:intergenic 40.0%
GATGGCGTTTGATGTAACTG+GGG + chr1_4:53488454-53488473 None:intergenic 45.0%
GGATGGCGTTTGATGTAACT+GGG + chr1_4:53488455-53488474 None:intergenic 45.0%
CAGTTACATCAAACGCCATC+CGG - chr1_4:53488454-53488473 Msa0169950:three_prime_UTR 45.0%
! GGTGTGCCACCTTGATTTTA+AGG + chr1_4:53488804-53488823 None:intergenic 45.0%
! CTCGAGCAACTTGTTCACTT+AGG + chr1_4:53489126-53489145 None:intergenic 45.0%
AAGTGAACAAGTTGCTCGAG+TGG - chr1_4:53489126-53489145 Msa0169950:three_prime_UTR 45.0%
AGTGAACAAGTTGCTCGAGT+GGG - chr1_4:53489127-53489146 Msa0169950:three_prime_UTR 45.0%
! TGTTTGTTGGTCTGCGATTC+CGG - chr1_4:53489190-53489209 Msa0169950:three_prime_UTR 45.0%
CACTTCCACTCTGTAGTTAG+AGG - chr1_4:53489288-53489307 Msa0169950:CDS 45.0%
TCAATATCTAGCCAACGGAG+AGG - chr1_4:53489907-53489926 Msa0169950:CDS 45.0%
GTCATCCACGATACAGTTTG+AGG + chr1_4:53490186-53490205 None:intergenic 45.0%
AGTTGCATGCGATAGGTGTT+TGG + chr1_4:53490223-53490242 None:intergenic 45.0%
TGTTATGGTGTCTTCTCCAG+CGG + chr1_4:53490396-53490415 None:intergenic 45.0%
CTGGAGAAGACACCATAACA+AGG - chr1_4:53490396-53490415 Msa0169950:intron 45.0%
CTCTCAAAGTTGTGACGTCA+AGG - chr1_4:53491020-53491039 Msa0169950:CDS 45.0%
! AGTCCAGTGTTGCTGCTTAT+GGG - chr1_4:53491069-53491088 Msa0169950:intron 45.0%
! GTCTGAAGCTTCAAATGCTG+TGG - chr1_4:53491643-53491662 Msa0169950:intron 45.0%
CGTTGAAGCTGATGCGTTTA+AGG - chr1_4:53491667-53491686 Msa0169950:intron 45.0%
CATGCTCGAAACTGCTGAAT+TGG - chr1_4:53491739-53491758 Msa0169950:intron 45.0%
! TAACGGACGAGATGTGATCA+TGG - chr1_4:53491896-53491915 Msa0169950:intron 45.0%
! CTAGTTGGTGTGGTTTGTGA+TGG - chr1_4:53492137-53492156 Msa0169950:CDS 45.0%
!! GGCTATCTTGCTGTTGTTAG+AGG - chr1_4:53492158-53492177 Msa0169950:CDS 45.0%
GGAGAGCTATCATGACAAGA+AGG - chr1_4:53492276-53492295 Msa0169950:intron 45.0%
AGTGAGGGTGAAATCACAAC+TGG - chr1_4:53492301-53492320 Msa0169950:intron 45.0%
!! GCAAACTTGTTGACAGTGCA+AGG - chr1_4:53492363-53492382 Msa0169950:intron 45.0%
ATGTCATTCCAAACAGTGCC+AGG + chr1_4:53492665-53492684 None:intergenic 45.0%
CCACGCTGATGTTAAACCAT+AGG + chr1_4:53492824-53492843 None:intergenic 45.0%
CCTATGGTTTAACATCAGCG+TGG - chr1_4:53492821-53492840 Msa0169950:intron 45.0%
TAACATCAGCGTGGGAAACA+AGG - chr1_4:53492830-53492849 Msa0169950:intron 45.0%
TGTTGACCTGTGACATGTAC+AGG - chr1_4:53492998-53493017 Msa0169950:intron 45.0%
GTTGACCTGTGACATGTACA+GGG - chr1_4:53492999-53493018 Msa0169950:intron 45.0%
AGTGCAGAAAACCAACACCT+AGG + chr1_4:53493458-53493477 None:intergenic 45.0%
! TTTTCTGCACTGAGAAGCTG+AGG - chr1_4:53493467-53493486 Msa0169950:intron 45.0%
TACCACCATTGATCCGACGA+TGG + chr1_4:53488416-53488435 None:intergenic 50.0%
CGGATGGCGTTTGATGTAAC+TGG + chr1_4:53488456-53488475 None:intergenic 50.0%
CTCAATTTGGGCAATACGGC+CGG + chr1_4:53488476-53488495 None:intergenic 50.0%
!! GTAACCACAAGTGTCGGTGT+CGG - chr1_4:53488616-53488635 Msa0169950:three_prime_UTR 50.0%
GTGTCGGACACAACATGTGT+CGG - chr1_4:53488632-53488651 Msa0169950:three_prime_UTR 50.0%
ACACAACATGTGTCGGACAC+CGG - chr1_4:53488639-53488658 Msa0169950:three_prime_UTR 50.0%
GTCCAAATGGCAATCGCTCT+CGG + chr1_4:53489160-53489179 None:intergenic 50.0%
! GAGCGATTGCCATTTGGACT+TGG - chr1_4:53489161-53489180 Msa0169950:three_prime_UTR 50.0%
! GTTTGTTGGTCTGCGATTCC+GGG - chr1_4:53489191-53489210 Msa0169950:three_prime_UTR 50.0%
! TTTGTTGGTCTGCGATTCCG+GGG - chr1_4:53489192-53489211 Msa0169950:three_prime_UTR 50.0%
CTACGCCTCTAACTACAGAG+TGG + chr1_4:53489296-53489315 None:intergenic 50.0%
! CACTCTGTAGTTAGAGGCGT+AGG - chr1_4:53489294-53489313 Msa0169950:CDS 50.0%
! GTTAGAGGCGTAGGCACAAT+TGG - chr1_4:53489303-53489322 Msa0169950:CDS 50.0%
TGAATTAGGGTCCTCTCCGT+TGG + chr1_4:53489921-53489940 None:intergenic 50.0%
TTCTGCAGTGTATGGGGGTT+TGG + chr1_4:53490145-53490164 None:intergenic 50.0%
TGGTGTGAGTTGCATGCGAT+AGG + chr1_4:53490230-53490249 None:intergenic 50.0%
!! GGGGTTTTGGTCGGTTTTGA+TGG + chr1_4:53490268-53490287 None:intergenic 50.0%
ACTCCTCTCACTGTGGACAA+CGG + chr1_4:53491052-53491071 None:intergenic 50.0%
! GAGTCCAGTGTTGCTGCTTA+TGG - chr1_4:53491068-53491087 Msa0169950:intron 50.0%
CAGTTTCGAGCATGTCGTCA+TGG + chr1_4:53491733-53491752 None:intergenic 50.0%
ATGCAGCATCAGTGGAAGAC+TGG + chr1_4:53491851-53491870 None:intergenic 50.0%
CAGAGATGATGCAGCATCAG+TGG + chr1_4:53491859-53491878 None:intergenic 50.0%
GGACGAGATGTGATCATGGA+TGG - chr1_4:53491900-53491919 Msa0169950:intron 50.0%
!! TATAGGTATCGAATGGGGGC+AGG - chr1_4:53491984-53492003 Msa0169950:CDS 50.0%
TCATGACAAGAAGGGCAGTG+AGG - chr1_4:53492285-53492304 Msa0169950:intron 50.0%
CATGACAAGAAGGGCAGTGA+GGG - chr1_4:53492286-53492305 Msa0169950:intron 50.0%
ACCAACACTACTATGGGACC+TGG - chr1_4:53492644-53492663 Msa0169950:intron 50.0%
TCCTTCAAGGTCAAGTGACG+TGG - chr1_4:53492694-53492713 Msa0169950:intron 50.0%
TCCACGTCACTTGACCTTGA+AGG + chr1_4:53492698-53492717 None:intergenic 50.0%
ACACATCTTGCACATCGTGC+AGG - chr1_4:53493326-53493345 Msa0169950:intron 50.0%
AACAGCTCAGACCTAGGTGT+TGG - chr1_4:53493444-53493463 Msa0169950:intron 50.0%
GAGCAACCTCGCACATGTTG+TGG - chr1_4:53488384-53488403 Msa0169950:three_prime_UTR 55.0%
AGCCTCCATCGTCGGATCAA+TGG - chr1_4:53488408-53488427 Msa0169950:three_prime_UTR 55.0%
CACCATTGATCCGACGATGG+AGG + chr1_4:53488413-53488432 None:intergenic 55.0%
CTCCATCGTCGGATCAATGG+TGG - chr1_4:53488411-53488430 Msa0169950:three_prime_UTR 55.0%
ATTTGGGCAATACGGCCGGA+TGG + chr1_4:53488472-53488491 None:intergenic 55.0%
CACAACATGTGTCGGACACC+GGG - chr1_4:53488640-53488659 Msa0169950:three_prime_UTR 55.0%
AGCCGAGAGCGATTGCCATT+TGG - chr1_4:53489155-53489174 Msa0169950:three_prime_UTR 55.0%
ATTATCACCCAACGGCACCC+CGG + chr1_4:53489212-53489231 None:intergenic 55.0%
!! TGGGGGTTTGGCGTTGGTTT+CGG + chr1_4:53490133-53490152 None:intergenic 55.0%
AGTGTATGGGGGTTTGGCGT+TGG + chr1_4:53490139-53490158 None:intergenic 55.0%
TTCCACTACCAATCGACCCC+CGG - chr1_4:53490369-53490388 Msa0169950:intron 55.0%
ACACTGGACTCCTCTCACTG+TGG + chr1_4:53491059-53491078 None:intergenic 55.0%
CCACCCATAAGCAGCAACAC+TGG + chr1_4:53491075-53491094 None:intergenic 55.0%
! CCAGTGTTGCTGCTTATGGG+TGG - chr1_4:53491072-53491091 Msa0169950:intron 55.0%
! GTGTTGCTGCTTATGGGTGG+AGG - chr1_4:53491075-53491094 Msa0169950:intron 55.0%
! CTGCTTATGGGTGGAGGCAT+GGG - chr1_4:53491081-53491100 Msa0169950:intron 55.0%
! TTGCTACCTTTGGCGGACCA+CGG + chr1_4:53492409-53492428 None:intergenic 55.0%
GCCAGGTCCCATAGTAGTGT+TGG + chr1_4:53492648-53492667 None:intergenic 55.0%
CTATGGGACCTGGCACTGTT+TGG - chr1_4:53492654-53492673 Msa0169950:intron 55.0%
CCTAGGTCTGAGCTGTTCAC+TGG + chr1_4:53493441-53493460 None:intergenic 55.0%
CCAGTGAACAGCTCAGACCT+AGG - chr1_4:53493438-53493457 Msa0169950:intron 55.0%
AGGCTGCCACAACATGTGCG+AGG + chr1_4:53488393-53488412 None:intergenic 60.0%
GTTGTGGCAGCCTCCATCGT+CGG - chr1_4:53488400-53488419 Msa0169950:three_prime_UTR 60.0%
GTGTCCGACACCGACACTTG+TGG + chr1_4:53488623-53488642 None:intergenic 60.0%
GAGGAGTGGCAAACACCACC+TGG + chr1_4:53488891-53488910 None:intergenic 60.0%
!! GGGTTTGGCGTTGGTTTCGG+TGG + chr1_4:53490130-53490149 None:intergenic 60.0%
TGGTGTCTTCTCCAGCGGAC+CGG + chr1_4:53490391-53490410 None:intergenic 60.0%
CCTCTCACTGTGGACAACGG+CGG + chr1_4:53491049-53491068 None:intergenic 60.0%
GCTGCTTATGGGTGGAGGCA+TGG - chr1_4:53491080-53491099 Msa0169950:intron 60.0%
! ATGGGTGGAGGCATGGGATC+TGG - chr1_4:53491087-53491106 Msa0169950:intron 60.0%
TGATGTCCGTGGTCCGCCAA+AGG - chr1_4:53492400-53492419 Msa0169950:intron 60.0%
!! TGCGATTCCGGGGTGCCGTT+GGG - chr1_4:53489202-53489221 Msa0169950:three_prime_UTR 65.0%
GACCGGGGGTCGATTGGTAG+TGG + chr1_4:53490374-53490393 None:intergenic 65.0%
TGTCTTCTCCAGCGGACCGG+GGG + chr1_4:53490388-53490407 None:intergenic 65.0%
GTGTCTTCTCCAGCGGACCG+GGG + chr1_4:53490389-53490408 None:intergenic 65.0%
GGTGTCTTCTCCAGCGGACC+GGG + chr1_4:53490390-53490409 None:intergenic 65.0%
CCGCCGTTGTCCACAGTGAG+AGG - chr1_4:53491046-53491065 Msa0169950:CDS 65.0%
!! CTGCGATTCCGGGGTGCCGT+TGG - chr1_4:53489201-53489220 Msa0169950:three_prime_UTR 70.0%
CCAGCGGACCGGGGGTCGAT+TGG + chr1_4:53490380-53490399 None:intergenic 75.0%
CCAATCGACCCCCGGTCCGC+TGG - chr1_4:53490377-53490396 Msa0169950:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 53488301 53493706 53488301 ID=Msa0169950;Name=Msa0169950
chr1_4 mRNA 53488301 53493706 53488301 ID=Msa0169950-mRNA-1;Parent=Msa0169950;Name=Msa0169950-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.85|0.87|1|0.85|0.87|8|937|471
chr1_4 exon 53488301 53489483 53488301 ID=Msa0169950-mRNA-1:exon:15953;Parent=Msa0169950-mRNA-1
chr1_4 exon 53489586 53489730 53489586 ID=Msa0169950-mRNA-1:exon:15952;Parent=Msa0169950-mRNA-1
chr1_4 exon 53489821 53490164 53489821 ID=Msa0169950-mRNA-1:exon:15951;Parent=Msa0169950-mRNA-1
chr1_4 exon 53490247 53490373 53490247 ID=Msa0169950-mRNA-1:exon:15950;Parent=Msa0169950-mRNA-1
chr1_4 exon 53490865 53491077 53490865 ID=Msa0169950-mRNA-1:exon:15949;Parent=Msa0169950-mRNA-1
chr1_4 exon 53491378 53491439 53491378 ID=Msa0169950-mRNA-1:exon:15948;Parent=Msa0169950-mRNA-1
chr1_4 exon 53491977 53492200 53491977 ID=Msa0169950-mRNA-1:exon:15947;Parent=Msa0169950-mRNA-1
chr1_4 exon 53493652 53493706 53493652 ID=Msa0169950-mRNA-1:exon:15946;Parent=Msa0169950-mRNA-1
chr1_4 CDS 53493652 53493706 53493652 ID=Msa0169950-mRNA-1:cds;Parent=Msa0169950-mRNA-1
chr1_4 CDS 53491977 53492200 53491977 ID=Msa0169950-mRNA-1:cds;Parent=Msa0169950-mRNA-1
chr1_4 CDS 53491378 53491439 53491378 ID=Msa0169950-mRNA-1:cds;Parent=Msa0169950-mRNA-1
chr1_4 CDS 53490865 53491077 53490865 ID=Msa0169950-mRNA-1:cds;Parent=Msa0169950-mRNA-1
chr1_4 CDS 53490247 53490373 53490247 ID=Msa0169950-mRNA-1:cds;Parent=Msa0169950-mRNA-1
chr1_4 CDS 53489821 53490164 53489821 ID=Msa0169950-mRNA-1:cds;Parent=Msa0169950-mRNA-1
chr1_4 CDS 53489586 53489730 53489586 ID=Msa0169950-mRNA-1:cds;Parent=Msa0169950-mRNA-1
chr1_4 CDS 53489238 53489483 53489238 ID=Msa0169950-mRNA-1:cds;Parent=Msa0169950-mRNA-1
chr1_4 three_prime_UTR 53488301 53489237 53488301 ID=Msa0169950-mRNA-1:three_prime_utr;Parent=Msa0169950-mRNA-1
Gene Sequence

>Msa0169950

ATGACGGTAACATCTATTTGTGATTCTCAATCTTCAAACAACATACAGCAACAAGCTAGGCAAATAGGATTTGTTGATGCTAGTGAGGTTCCAGAATTATGCAGATTGGCACAGGACTACTTGAGAAATTCTGAAGAGTGTAAAGAAAGTATCTATCAATATCTAGCCAACGGAGAGGACCCTAATTCACTATATGCAAAATTGATTGATGAGTTTGAAAGATGCATCCTCAGTTATTTCGCTTTTCATTGGAACCAAGCTTCATATATCATTAGTCAGGTATTGAGTACCGAGTCCCAACCGAAAATACATCTCAAAAATATTCTTTTGGCAGCCACAAGGGAACATAGATTTAAGAGAGTAGCAAAGAATCTAAAGGTGACAAGAGTGTTCTCTACTTTAGTAGAAGAGATTAAAGCAATAAAGGGAGACTCTCAAAGTTGTGACGTCAAGGACTCCGCCGTTGTCCACAGTGAGAGGAGTCCAGTGTTGCTGCTTATGGGTGGAGGCATGGGATCTGGAAAAAGCTATGTTCTTAAAGACATTCTAAAAGAATCATTTTGGTCTGAAGCTTCAAATGCTGTGGTCGTTGAAGCTGATGCGTTTAAGGAGAGTGATGTCATATATAAAGCTCTTAATTCTAGGGGTCACCATGACGACATGCTCGAAACTGCTGAATTGGTGCACCAGTCTTCCACTGATGCTGCATCATCTCTGCTAGTGACAGCTCTAAATAACGGACGAGATGTGATCATGGATGGTACCTTATCATGGGAACCTTTTGTAGAGCAAACTATAGCTATGGCAAGAAATATTCACAAATATAGGTATCGAATGGGGGCAGGATATAGAGAAGCTAAAGATGGGACAATAACTGAAAATTATTGGGAGCAAGTTAATGAGGCCGAAGAAGAGCATGAATCAAAGGAAAATTATAAAAGGGAGCTACACACCCGAAAGCCTTACAAAATTGTTCTAGTTGGTGTGGTTTGTGATGGCTATCTTGCTGTTGTTAGAGGCATTAGGAGAGCTATCATGACAAGAAGGGCAGTGAGGGTGAAATCACAACTGGAATCTCACAAAAGATTTGCTAATGCATTTCCAAAATATTGCAAACTTGTTGACAGTGCAAGGCTCTATTACACAACTGATGTCCGTGGTCCGCCAAAGTTAATAGAATGGACGAATGATTCTCACAATCTACAAGTGGAACCTGAAGTTCTCAAATGCTTGGAAATGATAAGCAGTTTAAATACTGAGGCAGATTCCATCTACGAACTTTATAATGAAACCAACACTACTATGGGACCTGGCACTGTTTGGAATGACATTGTTCTTTCTCCTTCAAGGTCAAGTGACGTGGAAAACTTAAGGGAATCCATTCTGAAAATAGAAAAAACCATCAAAAAACAATAA
Protein sequence

>Msa0169950

MTVTSICDSQSSNNIQQQARQIGFVDASEVPELCRLAQDYLRNSEECKESIYQYLANGEDPNSLYAKLIDEFERCILSYFAFHWNQASYIISQVLSTESQPKIHLKNILLAATREHRFKRVAKNLKVTRVFSTLVEEIKAIKGDSQSCDVKDSAVVHSERSPVLLLMGGGMGSGKSYVLKDILKESFWSEASNAVVVEADAFKESDVIYKALNSRGHHDDMLETAELVHQSSTDAASSLLVTALNNGRDVIMDGTLSWEPFVEQTIAMARNIHKYRYRMGAGYREAKDGTITENYWEQVNEAEEEHESKENYKRELHTRKPYKIVLVGVVCDGYLAVVRGIRRAIMTRRAVRVKSQLESHKRFANAFPKYCKLVDSARLYYTTDVRGPPKLIEWTNDSHNLQVEPEVLKCLEMISSLNTEADSIYELYNETNTTMGPGTVWNDIVLSPSRSSDVENLRESILKIEKTIKKQ*