AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1405480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1405480 MtrunA17_Chr1g0187071 92.748 524 33 3 1 524 1 519 0.0 970
Msa1405480 MtrunA17_Chr1g0187021 69.608 510 136 5 31 523 12 519 0.0 711
Msa1405480 MtrunA17_Chr1g0187051 67.961 515 137 5 22 523 5 504 0.0 694
Msa1405480 MtrunA17_Chr1g0184551 59.667 481 177 5 48 519 39 511 0.0 585
Msa1405480 MtrunA17_Chr7g0260781 64.481 366 116 5 159 519 14 370 3.42e-149 432
Msa1405480 MtrunA17_Chr7g0260791 44.970 169 84 3 3 167 10 173 1.28e-39 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1405480 AT1G06750.2 59.010 505 190 7 27 524 25 519 0.0 561
Msa1405480 AT1G06750.3 59.010 505 190 7 27 524 18 512 0.0 561
Msa1405480 AT1G06750.1 59.010 505 190 7 27 524 18 512 0.0 561
Msa1405480 AT2G30630.1 60.377 477 176 6 47 519 54 521 0.0 549
Msa1405480 AT1G04280.1 60.788 482 178 4 46 523 59 533 0.0 546
Msa1405480 AT1G04280.2 60.788 482 178 4 46 523 5 479 0.0 545
Msa1405480 AT2G30630.2 58.032 498 175 7 47 519 54 542 0.0 538
Msa1405480 AT2G30630.3 60.907 353 125 5 47 395 54 397 2.38e-139 408

Find 160 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACAAGTTTGCAATATTT+TGG 0.119289 tig0023138:-79023 None:intergenic
CGTTGAAGCTGATGCGTTTA+AGG 0.191956 tig0023138:+78337 Msa1405480:CDS
AGAAGAGATTAAAGCAATAA+AGG 0.228358 tig0023138:+77664 Msa1405480:CDS
GGACAATAACTGAAAATTAT+TGG 0.237529 tig0023138:+78697 Msa1405480:CDS
AATCAAAGGAAAATTATAAA+AGG 0.238536 tig0023138:+78751 Msa1405480:CDS
AGTGAGAGAATATCTCAATT+TGG 0.244042 tig0023138:-75164 None:intergenic
TTGTACATATATTATTTCTA+TGG 0.257514 tig0023138:+79475 Msa1405480:three_prime_UTR
ACACGTTCTTCGTCACTTCT+TGG 0.261140 tig0023138:-74830 None:intergenic
CACTAAAATACTGTTATAAC+CGG 0.301116 tig0023138:-79726 None:intergenic
TCCAAGCATTTGAGAACTTC+AGG 0.301231 tig0023138:-79236 None:intergenic
TCATGAATAGGAAATGAAAT+TGG 0.311383 tig0023138:-74960 None:intergenic
TTCATTATAAAGTTCGTAGA+TGG 0.319575 tig0023138:-79291 None:intergenic
GAGTCCAGTGTTGCTGCTTA+TGG 0.322600 tig0023138:+77739 Msa1405480:CDS
GGCTATCTTGCTGTTGTTAG+AGG 0.330163 tig0023138:+78828 Msa1405480:CDS
AATAAAAGCATTAGAAATAA+TGG 0.333632 tig0023138:-74804 None:intergenic
ACATTGTTCTTTCTCCTTCA+AGG 0.341632 tig0023138:+79351 Msa1405480:CDS
CAAGAAATGGCAAAGTAAAA+AGG 0.341751 tig0023138:+74698 Msa1405480:five_prime_UTR
CATGCTCGAAACTGCTGAAT+TGG 0.348113 tig0023138:+78409 Msa1405480:CDS
GAAGAGATTAAAGCAATAAA+GGG 0.359600 tig0023138:+77665 Msa1405480:CDS
CAGTCAATTGAGTCATTTGT+AGG 0.359752 tig0023138:+79768 Msa1405480:three_prime_UTR
CTATGGGACCTGGCACTGTT+TGG 0.363637 tig0023138:+79324 Msa1405480:CDS
CTGTTAGATTTCTTTAGATT+AGG 0.373869 tig0023138:+80282 Msa1405480:three_prime_UTR
GTGAGAGAATATCTCAATTT+GGG 0.376022 tig0023138:-75163 None:intergenic
GATGTATTGTGTGATCTCTT+TGG 0.377369 tig0023138:+79881 Msa1405480:three_prime_UTR
CTTTGATTCGTGCTCTTCTT+CGG 0.378530 tig0023138:-78736 None:intergenic
GACAATAACTGAAAATTATT+GGG 0.379749 tig0023138:+78698 Msa1405480:CDS
AGTCCAGTGTTGCTGCTTAT+GGG 0.381651 tig0023138:+77740 Msa1405480:CDS
ATGAGTTTCTTTAAAGATGA+AGG 0.391172 tig0023138:-74730 None:intergenic
ATGTATTGTGTGATCTCTTT+GGG 0.393518 tig0023138:+79882 Msa1405480:three_prime_UTR
CTGCTTATGGGTGGAGGCAT+GGG 0.397062 tig0023138:+77752 Msa1405480:CDS
TCCACGGTGAATCTTCAGTT+TGG 0.398613 tig0023138:-80179 None:intergenic
AAAAGTATATTGATGATTCC+CGG 0.407151 tig0023138:+79707 Msa1405480:three_prime_UTR
CAAGAAATATTCACAAATAT+AGG 0.408621 tig0023138:+78637 Msa1405480:CDS
ATGGGTGGAGGCATGGGATC+TGG 0.410048 tig0023138:+77758 Msa1405480:CDS
CTCAATTTGGGCAACACGGC+CGG 0.414553 tig0023138:-75151 None:intergenic
TTGCTGTTGTTAGAGGCATT+AGG 0.419183 tig0023138:+78835 Msa1405480:CDS
CAAGTGATGTGGAAAACTTA+AGG 0.419408 tig0023138:+79375 Msa1405480:CDS
CACAAATATAGGTATCGAAT+GGG 0.422050 tig0023138:+78648 Msa1405480:CDS
TCCACATCACTTGACCTTGA+AGG 0.425410 tig0023138:-79365 None:intergenic
AGACGTGTCATTCTGCTTTG+TGG 0.431672 tig0023138:-74861 None:intergenic
CTAGTGACAGCTCTAAATAA+AGG 0.434780 tig0023138:+78549 Msa1405480:CDS
ACCTGAAGTTCTCAAATGCT+TGG 0.434910 tig0023138:+79235 Msa1405480:CDS
TCTAACAGCTCATAATCAAA+AGG 0.434988 tig0023138:-80267 None:intergenic
AAACTGTTTGCTACCTTTGG+TGG 0.436970 tig0023138:-79083 None:intergenic
CACTTACATCAAACCGCATC+CGG 0.437528 tig0023138:+75132 Msa1405480:CDS
GCTGCTTATGGGTGGAGGCA+TGG 0.440698 tig0023138:+77751 Msa1405480:CDS
ATGTAAGTGGGGAATGATCT+TGG 0.443811 tig0023138:-75118 None:intergenic
GAGATATTCTCTCACTATGT+TGG 0.445631 tig0023138:+75171 Msa1405480:CDS
CTTGATATTGTGGAACAACT+TGG 0.450027 tig0023138:-80063 None:intergenic
TATATAAAGCTCTTAACTCT+AGG 0.453317 tig0023138:+78372 Msa1405480:CDS
TAATGAAACCAACACTGCTA+TGG 0.454761 tig0023138:+79307 Msa1405480:CDS
TAGATGTTACCGTCATGAAT+AGG 0.458202 tig0023138:-74972 None:intergenic
TGATTTCAGCAACAAGTTGA+AGG 0.458638 tig0023138:+79802 Msa1405480:three_prime_UTR
TACAAAAGGTTCCCATGATA+AGG 0.460056 tig0023138:-78595 None:intergenic
AAGTGGAAGCACTCAAGAAA+TGG 0.460072 tig0023138:+74685 Msa1405480:five_prime_UTR
AAGTGATGTGGAAAACTTAA+GGG 0.467576 tig0023138:+79376 Msa1405480:CDS
CGGATGCGGTTTGATGTAAG+TGG 0.474218 tig0023138:-75131 None:intergenic
TGTATATTTAGTGCTACCAT+TGG 0.476114 tig0023138:+79608 Msa1405480:three_prime_UTR
ATGTCATTCCAAACAGTGCC+AGG 0.488602 tig0023138:-79332 None:intergenic
ATATAAAGCTCTTAACTCTA+GGG 0.489636 tig0023138:+78373 Msa1405480:CDS
TCATGGATGGTACCTTATCA+TGG 0.490150 tig0023138:+78583 Msa1405480:CDS
TTTGTGAATATTTCTTGCCA+TGG 0.491743 tig0023138:-78631 None:intergenic
AGCCTCCATCGTCGAATCAA+TGG 0.497510 tig0023138:+75086 Msa1405480:CDS
GACTAATGATATATGAAGCT+TGG 0.499250 tig0023138:-76677 None:intergenic
GCCAGGTCCCATAGCAGTGT+TGG 0.499542 tig0023138:-79315 None:intergenic
ATCAAAGGAAAATTATAAAA+GGG 0.500396 tig0023138:+78752 Msa1405480:CDS
AGCTTCATATATCATTAGTC+AGG 0.502600 tig0023138:+76680 Msa1405480:CDS
TTGGGCAACACGGCCGGATG+CGG 0.503203 tig0023138:-75145 None:intergenic
CTAGTTGGTGTGGTTTGTGA+TGG 0.503630 tig0023138:+78807 Msa1405480:CDS
AATGAAACCAACACTGCTAT+GGG 0.504209 tig0023138:+79308 Msa1405480:CDS
GGATATAGAGAAGCTAAAGA+TGG 0.509091 tig0023138:+78675 Msa1405480:CDS
CAGAGATGATGCAGCATCAG+TGG 0.510272 tig0023138:-78526 None:intergenic
GGTTCCAGAGTTATGCAGAT+TGG 0.511336 tig0023138:+76509 Msa1405480:CDS
GCAAACTTGTTGACAGTGCA+AGG 0.512689 tig0023138:+79033 Msa1405480:CDS
AGAGTTATGCAGATTGGCAC+AGG 0.514548 tig0023138:+76515 Msa1405480:CDS
ATACAGCTACAAGGTACTAC+TGG 0.516118 tig0023138:+75021 Msa1405480:CDS
TAATAACAAATAATTAGAGT+TGG 0.518147 tig0023138:-79563 None:intergenic
TCACAAATATAGGTATCGAA+TGG 0.521297 tig0023138:+78647 Msa1405480:CDS
CCCTACAGAATTGTGCTAGT+TGG 0.524552 tig0023138:+78792 Msa1405480:CDS
CAGAATTGTGCTAGTTGGTG+TGG 0.525790 tig0023138:+78797 Msa1405480:CDS
CGAAGAAGAGCACGAATCAA+AGG 0.525845 tig0023138:+78737 Msa1405480:CDS
AAGCTTCAATCTTGTTTCCA+CGG 0.529809 tig0023138:-80195 None:intergenic
TGTTGACCTGTGACATGTAC+AGG 0.530371 tig0023138:+79668 Msa1405480:three_prime_UTR
CCTAGGTCTGAGCTGTTCAC+TGG 0.530404 tig0023138:-80108 None:intergenic
ACATACTGCAGTTAATAGAA+TGG 0.530487 tig0023138:+79183 Msa1405480:intron
GAGAGTAGCAAAGAATCTAA+AGG 0.532305 tig0023138:+77616 Msa1405480:CDS
AAACGAGATCCTTGATATTG+TGG 0.533074 tig0023138:-80073 None:intergenic
TCCTTCAAGGTCAAGTGATG+TGG 0.533467 tig0023138:+79364 Msa1405480:CDS
TTGATATTGTGGAACAACTT+GGG 0.533711 tig0023138:-80062 None:intergenic
AGTGAGGGTGAAATCACAAC+TGG 0.534858 tig0023138:+78971 Msa1405480:CDS
CAAGTTGTTCCACAATATCA+AGG 0.537351 tig0023138:+80064 Msa1405480:three_prime_UTR
CCACCCATAAGCAGCAACAC+TGG 0.545632 tig0023138:-77743 None:intergenic
ACCAACACTGCTATGGGACC+TGG 0.548467 tig0023138:+79314 Msa1405480:CDS
GCTATCGTCTGCTCTACAAA+AGG 0.550676 tig0023138:-78609 None:intergenic
GGAGAGCTATCATGACAAGA+AGG 0.552661 tig0023138:+78946 Msa1405480:intron
GTCTGAAGCTTCAAATGCTG+TGG 0.553322 tig0023138:+78313 Msa1405480:CDS
CTAACAGCTCATAATCAAAA+GGG 0.554400 tig0023138:-80266 None:intergenic
AGCTGAAAATAAAGCTCCAA+TGG 0.555447 tig0023138:-79624 None:intergenic
TAAAGGACGAGATGTGATCA+TGG 0.557425 tig0023138:+78566 Msa1405480:CDS
TATTTCCCTGTACATGTCAC+AGG 0.558799 tig0023138:-79674 None:intergenic
AGATAGATGATACAAGCTGT+TGG 0.559240 tig0023138:+79956 Msa1405480:three_prime_UTR
CATGACAAGAAGGGCAGTGA+GGG 0.561480 tig0023138:+78956 Msa1405480:CDS
TGTGCCAATCTGCATAACTC+TGG 0.561897 tig0023138:-76513 None:intergenic
AGGATTTGTTGATGCTAGTG+AGG 0.566512 tig0023138:+76488 Msa1405480:CDS
CTATGGTTTAACATCAGCGT+GGG 0.568122 tig0023138:+79492 Msa1405480:three_prime_UTR
ACACATCTTGCACATCGTGC+AGG 0.568196 tig0023138:+79996 Msa1405480:three_prime_UTR
AACAGCTCAGACCTAGGTGT+TGG 0.568366 tig0023138:+80114 Msa1405480:three_prime_UTR
ATTTCATTTCCTATTCATGA+CGG 0.571791 tig0023138:+74963 Msa1405480:exon
CTCTCAAAGTTGTGACGTCA+AGG 0.573033 tig0023138:+77691 Msa1405480:CDS
TTATTGGGAGCAAGTTAATG+AGG 0.573693 tig0023138:+78713 Msa1405480:CDS
TTCGTAGATGGAATCTGCCT+CGG 0.573861 tig0023138:-79279 None:intergenic
CAAGGTACTACTGGTAGTGT+TGG 0.576348 tig0023138:+75030 Msa1405480:CDS
GATATAGAGAAGCTAAAGAT+GGG 0.576466 tig0023138:+78676 Msa1405480:CDS
CATGGATGGTACCTTATCAT+GGG 0.578376 tig0023138:+78584 Msa1405480:CDS
CCAGTGAACAGCTCAGACCT+AGG 0.580088 tig0023138:+80108 Msa1405480:three_prime_UTR
TAACATCAGCGTGGGAAACA+AGG 0.581304 tig0023138:+79500 Msa1405480:three_prime_UTR
ATCTATCAATATCTAGCCAA+CGG 0.583112 tig0023138:+76573 Msa1405480:CDS
GTGTTGCTGCTTATGGGTGG+AGG 0.584402 tig0023138:+77746 Msa1405480:CDS
CCAACTAGCACAATTCTGTA+GGG 0.585039 tig0023138:-78792 None:intergenic
CAGTTTCGAGCATGTCGTCA+TGG 0.587215 tig0023138:-78400 None:intergenic
TTGCTACCTTTGGTGGACCA+CGG 0.587632 tig0023138:-79076 None:intergenic
CCGCCGTTGTCCACAGTGAG+AGG 0.590571 tig0023138:+77717 Msa1405480:CDS
TGAATTAGGGTCCTCTCCGT+TGG 0.591979 tig0023138:-76589 None:intergenic
ACCAACTAGCACAATTCTGT+AGG 0.594431 tig0023138:-78793 None:intergenic
GAGAGCTATCATGACAAGAA+GGG 0.596487 tig0023138:+78947 Msa1405480:CDS
ACAAATATAGGTATCGAATG+GGG 0.597771 tig0023138:+78649 Msa1405480:CDS
GGACGAGATGTGATCATGGA+TGG 0.604719 tig0023138:+78570 Msa1405480:CDS
CCAGTGTTGCTGCTTATGGG+TGG 0.605731 tig0023138:+77743 Msa1405480:CDS
CACCATTGATTCGACGATGG+AGG 0.606869 tig0023138:-75088 None:intergenic
AAGAGTACTCAACAATTACA+TGG 0.607289 tig0023138:-80337 None:intergenic
TCAAACAACATACAGCTACA+AGG 0.610579 tig0023138:+75012 Msa1405480:CDS
GGATGCGGTTTGATGTAAGT+GGG 0.610947 tig0023138:-75130 None:intergenic
TAGATGATACAAGCTGTTGG+AGG 0.612887 tig0023138:+79959 Msa1405480:three_prime_UTR
TGATGTCCGTGGTCCACCAA+AGG 0.616911 tig0023138:+79070 Msa1405480:CDS
TGTAGAGCAGACGATAGCCA+TGG 0.622550 tig0023138:+78614 Msa1405480:CDS
TGATTCTCACAATCTACAAG+TGG 0.622599 tig0023138:+79211 Msa1405480:CDS
TATAAAGCTCTTAACTCTAG+GGG 0.623229 tig0023138:+78374 Msa1405480:CDS
ACAAAGTAGGAGTAAGCAAG+TGG 0.627101 tig0023138:+74668 None:intergenic
CAGGAAGATGAAGAAAGAAG+AGG 0.629284 tig0023138:+80015 Msa1405480:three_prime_UTR
CATCATCATTAGATTAGACG+TGG 0.631692 tig0023138:+74750 Msa1405480:five_prime_UTR
ATATCTCAATTTGGGCAACA+CGG 0.637776 tig0023138:-75155 None:intergenic
CAAATATAGGTATCGAATGG+GGG 0.646022 tig0023138:+78650 Msa1405480:CDS
CTCCATCGTCGAATCAATGG+TGG 0.653590 tig0023138:+75089 Msa1405480:CDS
GATAAGCAGTTTAAATACCG+AGG 0.657474 tig0023138:+79262 Msa1405480:CDS
ACACTGGACTCCTCTCACTG+TGG 0.664444 tig0023138:-77727 None:intergenic
AATGAAAAGCGAAATAACTG+AGG 0.665453 tig0023138:-76650 None:intergenic
ACTAAAATACTGTTATAACC+GGG 0.672367 tig0023138:-79725 None:intergenic
GAGCAACCTCACACATGTTG+TGG 0.674543 tig0023138:+75062 Msa1405480:CDS
TCATGACAAGAAGGGCAGTG+AGG 0.676129 tig0023138:+78955 Msa1405480:CDS
GTTGACCTGTGACATGTACA+GGG 0.683122 tig0023138:+79669 Msa1405480:three_prime_UTR
GATGCGGTTTGATGTAAGTG+GGG 0.687153 tig0023138:-75129 None:intergenic
CCTCTCACTGTGGACAACGG+CGG 0.688206 tig0023138:-77717 None:intergenic
TACCACCATTGATTCGACGA+TGG 0.696379 tig0023138:-75091 None:intergenic
AGTGCAGAAAACCAACACCT+AGG 0.696507 tig0023138:-80125 None:intergenic
TCTATGGTTTAACATCAGCG+TGG 0.697321 tig0023138:+79491 Msa1405480:three_prime_UTR
ACTCCTCTCACTGTGGACAA+CGG 0.700813 tig0023138:-77720 None:intergenic
TATTACACGACTGATGTCCG+TGG 0.704279 tig0023138:+79059 Msa1405480:CDS
TCAATATCTAGCCAACGGAG+AGG 0.708193 tig0023138:+76578 Msa1405480:CDS
TCCAAACTGAAGATTCACCG+TGG 0.743988 tig0023138:+80178 Msa1405480:three_prime_UTR
AGGCTGCCACAACATGTGTG+AGG 0.761589 tig0023138:-75068 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAAATGGATAAATATT+TGG + tig0023138:77916-77935 Msa1405480:intron 10.0%
!!! AATAAAAGCATTAGAAATAA+TGG - tig0023138:74807-74826 None:intergenic 15.0%
!! ATTATACAAAATAAAGGTTT+GGG - tig0023138:76112-76131 None:intergenic 15.0%
!! TAGTTGATTATACAAAATAA+AGG - tig0023138:76118-76137 None:intergenic 15.0%
!!! ATATTTTTGAGATGTATTTT+CGG - tig0023138:77263-77282 None:intergenic 15.0%
!!! AAAATATAAATGGTTTTAAC+TGG - tig0023138:77463-77482 None:intergenic 15.0%
!!! AATTACTCAATGTTTTTTAA+AGG - tig0023138:77499-77518 None:intergenic 15.0%
!!! ATAAACTCATTTTCTTAATT+TGG - tig0023138:77900-77919 None:intergenic 15.0%
!! AAGAAAATGAGTTTATAAAA+TGG + tig0023138:77904-77923 Msa1405480:intron 15.0%
!!! TATTTCTGTAAATTCATTAA+TGG + tig0023138:77992-78011 Msa1405480:intron 15.0%
!! AATCAAAGGAAAATTATAAA+AGG + tig0023138:78751-78770 Msa1405480:CDS 15.0%
!! ATCAAAGGAAAATTATAAAA+GGG + tig0023138:78752-78771 Msa1405480:CDS 15.0%
!!! TATTAGTTATTGTTTTTTGA+TGG - tig0023138:79426-79445 None:intergenic 15.0%
!!! TTGTACATATATTATTTCTA+TGG + tig0023138:79475-79494 Msa1405480:three_prime_UTR 15.0%
!! TAATAACAAATAATTAGAGT+TGG - tig0023138:79566-79585 None:intergenic 15.0%
!!! ATTGGAATTAGAATTTTGAA+TGG - tig0023138:74945-74964 None:intergenic 20.0%
!! AAATATTCAAGATAGAATCA+TGG - tig0023138:75495-75514 None:intergenic 20.0%
!!! ATATAGAATTTTTTTTGGTG+AGG - tig0023138:75583-75602 None:intergenic 20.0%
!! TCACCAAAAAAAATTCTATA+TGG + tig0023138:75582-75601 Msa1405480:intron 20.0%
!! ATGTAAATATAACAAGAGTT+GGG - tig0023138:75608-75627 None:intergenic 20.0%
!! TATCCAATTTCAAATAACTT+TGG + tig0023138:75752-75771 Msa1405480:intron 20.0%
!!! TATCCAAAGTTATTTGAAAT+TGG - tig0023138:75758-75777 None:intergenic 20.0%
!!! TTCTTATTTATTTTGAAACC+TGG + tig0023138:76064-76083 Msa1405480:intron 20.0%
!! GATTATACAAAATAAAGGTT+TGG - tig0023138:76113-76132 None:intergenic 20.0%
!!! ATTTTGCATATAGTGAATTA+GGG - tig0023138:76605-76624 None:intergenic 20.0%
!!! AATTTTGCATATAGTGAATT+AGG - tig0023138:76606-76625 None:intergenic 20.0%
!!! ACATCTCAAAAATATTCTTT+TGG + tig0023138:77268-77287 Msa1405480:CDS 20.0%
!! TTAAGTTTCTAATAAGTACA+AGG + tig0023138:77535-77554 Msa1405480:intron 20.0%
!! CATAGAATTGAAAGTTTAAA+GGG - tig0023138:77972-77991 None:intergenic 20.0%
!! ACATAGAATTGAAAGTTTAA+AGG - tig0023138:77973-77992 None:intergenic 20.0%
!! ATATCTTATACAATACACTA+AGG + tig0023138:78160-78179 Msa1405480:intron 20.0%
!!! ACTTATCATGTGTTAAATTT+TGG + tig0023138:78223-78242 Msa1405480:intron 20.0%
!! TTTCATCCTTGATTATTAAA+TGG + tig0023138:78272-78291 Msa1405480:intron 20.0%
!!! TTTTGATGACAAACTAATTA+GGG - tig0023138:78484-78503 None:intergenic 20.0%
!!! ATTTTGATGACAAACTAATT+AGG - tig0023138:78485-78504 None:intergenic 20.0%
!! CAAGAAATATTCACAAATAT+AGG + tig0023138:78637-78656 Msa1405480:CDS 20.0%
!! GACAATAACTGAAAATTATT+GGG + tig0023138:78698-78717 Msa1405480:CDS 20.0%
!!! TGACATTTTTCATTGAAATT+TGG + tig0023138:78920-78939 Msa1405480:intron 20.0%
!! TTAGCATTAATATTGCAAAA+TGG + tig0023138:79145-79164 Msa1405480:intron 20.0%
!! ATGAGTTTCTTTAAAGATGA+AGG - tig0023138:74733-74752 None:intergenic 25.0%
! TCATGAATAGGAAATGAAAT+TGG - tig0023138:74963-74982 None:intergenic 25.0%
! ATTTCATTTCCTATTCATGA+CGG + tig0023138:74963-74982 Msa1405480:exon 25.0%
!!! TAAGTGCATGTTTTTATTGT+CGG + tig0023138:75390-75409 Msa1405480:intron 25.0%
! GAAACTTACATATAGACAAA+AGG - tig0023138:75539-75558 None:intergenic 25.0%
! CATGTAAATATAACAAGAGT+TGG - tig0023138:75609-75628 None:intergenic 25.0%
!! CAACTCTTGTTATATTTACA+TGG + tig0023138:75607-75626 Msa1405480:intron 25.0%
!! GGATAAATTTTGCTTTCTAA+GGG - tig0023138:75737-75756 None:intergenic 25.0%
!! TGGATAAATTTTGCTTTCTA+AGG - tig0023138:75738-75757 None:intergenic 25.0%
!!! AAATAAGAAAAAAGTGCTGT+TGG - tig0023138:76053-76072 None:intergenic 25.0%
!! TGAAATGAAAAAGACTAGTT+AGG + tig0023138:76185-76204 Msa1405480:intron 25.0%
!! TTTAAAGTCTTGGATATGTT+TGG - tig0023138:76263-76282 None:intergenic 25.0%
!! TTAAACCACATGTCTTTTAT+TGG + tig0023138:76278-76297 Msa1405480:intron 25.0%
! TCTATCATTGAATGAAACAT+TGG + tig0023138:76315-76334 Msa1405480:intron 25.0%
! GACAAGAAAGTAAAAACAAA+TGG + tig0023138:76365-76384 Msa1405480:intron 25.0%
! AACGAGAAAAGTAAATGAAT+TGG - tig0023138:76731-76750 None:intergenic 25.0%
! AACTATAAAAAGAGAAAGTG+AGG - tig0023138:76972-76991 None:intergenic 25.0%
! TTCACTTATCAACTTTATCA+GGG - tig0023138:77093-77112 None:intergenic 25.0%
! ATTCACTTATCAACTTTATC+AGG - tig0023138:77094-77113 None:intergenic 25.0%
! AGTCATATAAAAAAACTGCA+TGG - tig0023138:77170-77189 None:intergenic 25.0%
! TTCGATATAAATTTACCTTG+TGG - tig0023138:77297-77316 None:intergenic 25.0%
!!! TCGAAGCCAATTATTTTTAA+CGG + tig0023138:77382-77401 Msa1405480:intron 25.0%
! CATATTAGTGAATAATGATG+TGG - tig0023138:77566-77585 None:intergenic 25.0%
! CACATCATTATTCACTAATA+TGG + tig0023138:77564-77583 Msa1405480:intron 25.0%
! AGAAGAGATTAAAGCAATAA+AGG + tig0023138:77664-77683 Msa1405480:CDS 25.0%
! GAAGAGATTAAAGCAATAAA+GGG + tig0023138:77665-77684 Msa1405480:CDS 25.0%
! TTTAACACATGATAAGTAAG+AGG - tig0023138:78220-78239 None:intergenic 25.0%
! CCAAAACCATTTAATAATCA+AGG - tig0023138:78281-78300 None:intergenic 25.0%
!! CCTTGATTATTAAATGGTTT+TGG + tig0023138:78278-78297 Msa1405480:intron 25.0%
! TATATAAAGCTCTTAACTCT+AGG + tig0023138:78372-78391 Msa1405480:CDS 25.0%
! ATATAAAGCTCTTAACTCTA+GGG + tig0023138:78373-78392 Msa1405480:CDS 25.0%
! TTTGTCATCAAAATCTAAAC+AGG + tig0023138:78491-78510 Msa1405480:intron 25.0%
! GGACAATAACTGAAAATTAT+TGG + tig0023138:78697-78716 Msa1405480:CDS 25.0%
!! TTTTTCATTGAAATTTGGAC+AGG + tig0023138:78925-78944 Msa1405480:intron 25.0%
!! TCAACAAGTTTGCAATATTT+TGG - tig0023138:79026-79045 None:intergenic 25.0%
! TTCATTATAAAGTTCGTAGA+TGG - tig0023138:79294-79313 None:intergenic 25.0%
!!! GGTTTTTTCTATTTTCAGAA+TGG - tig0023138:79405-79424 None:intergenic 25.0%
!!! CTTTATTTTCAGCTCTAATT+TGG + tig0023138:79633-79652 Msa1405480:three_prime_UTR 25.0%
!! AAAAGTATATTGATGATTCC+CGG + tig0023138:79707-79726 Msa1405480:three_prime_UTR 25.0%
! ACTAAAATACTGTTATAACC+GGG - tig0023138:79728-79747 None:intergenic 25.0%
! CACTAAAATACTGTTATAAC+CGG - tig0023138:79729-79748 None:intergenic 25.0%
!!! ACAGTATTTTAGTGTAGTTT+TGG + tig0023138:79735-79754 Msa1405480:three_prime_UTR 25.0%
! CTGTTAGATTTCTTTAGATT+AGG + tig0023138:80282-80301 Msa1405480:three_prime_UTR 25.0%
CAAGAAATGGCAAAGTAAAA+AGG + tig0023138:74698-74717 Msa1405480:five_prime_UTR 30.0%
GTGAGAGAATATCTCAATTT+GGG - tig0023138:75166-75185 None:intergenic 30.0%
AGTGAGAGAATATCTCAATT+TGG - tig0023138:75167-75186 None:intergenic 30.0%
AAAACATGCACTTACTAAGT+TGG - tig0023138:75384-75403 None:intergenic 30.0%
!! TGTTTTTATTGTCGGTGAAT+TGG + tig0023138:75398-75417 Msa1405480:intron 30.0%
CATAGCTTTCGTTAAAATCA+AGG + tig0023138:75462-75481 Msa1405480:intron 30.0%
ATAGACAAAAGGAAGATTTC+AGG - tig0023138:75528-75547 None:intergenic 30.0%
TTGTCTATATGTAAGTTTCC+AGG + tig0023138:75540-75559 Msa1405480:intron 30.0%
!!! TAGAATTTTTTTTGGTGAGG+AGG - tig0023138:75580-75599 None:intergenic 30.0%
!!! GGGCCATATAGAATTTTTTT+TGG - tig0023138:75588-75607 None:intergenic 30.0%
TTAATTGTTTACATGGCTAC+AGG - tig0023138:75633-75652 None:intergenic 30.0%
AAAACATGAAACAAGGGATT+GGG - tig0023138:75679-75698 None:intergenic 30.0%
AGGTTGAAAACATGAAACAA+GGG - tig0023138:75685-75704 None:intergenic 30.0%
AAGGTTGAAAACATGAAACA+AGG - tig0023138:75686-75705 None:intergenic 30.0%
TTGATACTAATTAGCTGACA+AGG - tig0023138:75705-75724 None:intergenic 30.0%
!! ATTGTTTTGTAAGAACAACC+AGG - tig0023138:76085-76104 None:intergenic 30.0%
! ACTTTTTAACACCGATCATA+AGG - tig0023138:76161-76180 None:intergenic 30.0%
!! TTATGATCGGTGTTAAAAAG+TGG + tig0023138:76160-76179 Msa1405480:intron 30.0%
GTATAGTGAAATTGAATGGA+AGG - tig0023138:76233-76252 None:intergenic 30.0%
GATGGTATAGTGAAATTGAA+TGG - tig0023138:76237-76256 None:intergenic 30.0%
ATTGAATGAAACATTGGAGT+AGG + tig0023138:76321-76340 Msa1405480:intron 30.0%
TGATGATAATCTCAAAGTAC+AGG + tig0023138:76407-76426 Msa1405480:intron 30.0%
! CTTTTCATGAATTGAATCCA+TGG + tig0023138:76432-76451 Msa1405480:intron 30.0%
ATCTATCAATATCTAGCCAA+CGG + tig0023138:76573-76592 Msa1405480:CDS 30.0%
AATGAAAAGCGAAATAACTG+AGG - tig0023138:76653-76672 None:intergenic 30.0%
!! TCAGTTATTTCGCTTTTCAT+TGG + tig0023138:76652-76671 Msa1405480:CDS 30.0%
GACTAATGATATATGAAGCT+TGG - tig0023138:76680-76699 None:intergenic 30.0%
AGCTTCATATATCATTAGTC+AGG + tig0023138:76680-76699 Msa1405480:CDS 30.0%
!!! TTTCGGTGGTTAGTTTTTAT+TGG - tig0023138:76787-76806 None:intergenic 30.0%
!!! TGTTTTTCGGGTGTTTATTT+GGG - tig0023138:76998-77017 None:intergenic 30.0%
! ATGTTGGGATAAGTGTTTTT+CGG - tig0023138:77011-77030 None:intergenic 30.0%
GTGGAATTCAAATGAATGTT+GGG - tig0023138:77026-77045 None:intergenic 30.0%
AGTGGAATTCAAATGAATGT+TGG - tig0023138:77027-77046 None:intergenic 30.0%
!!! GTTTTGATTCTCTCAATCAT+AGG + tig0023138:77217-77236 Msa1405480:intron 30.0%
!! TTTGAGATGTATTTTCGGTT+GGG - tig0023138:77258-77277 None:intergenic 30.0%
!!! TTTTGAGATGTATTTTCGGT+TGG - tig0023138:77259-77278 None:intergenic 30.0%
!! TAATATGGTGCTATGTTTAC+AGG + tig0023138:77579-77598 Msa1405480:intron 30.0%
!! AATATGGTGCTATGTTTACA+GGG + tig0023138:77580-77599 Msa1405480:intron 30.0%
ACAATGGTATTGTATTGAAG+TGG - tig0023138:77838-77857 None:intergenic 30.0%
! TTTCTTAATTTGGACACACA+TGG - tig0023138:77890-77909 None:intergenic 30.0%
! TTTCCTATAGACATTGGTTA+AGG + tig0023138:78029-78048 Msa1405480:intron 30.0%
ATTCCTTAACCAATGTCTAT+AGG - tig0023138:78035-78054 None:intergenic 30.0%
! TATTCTTAGCGCATTTGTTA+AGG - tig0023138:78128-78147 None:intergenic 30.0%
!!! TTCATAGTTTTTTTCGTTGG+GGG - tig0023138:78197-78216 None:intergenic 30.0%
!!! GTTCATAGTTTTTTTCGTTG+GGG - tig0023138:78198-78217 None:intergenic 30.0%
!!! GGTTCATAGTTTTTTTCGTT+GGG - tig0023138:78199-78218 None:intergenic 30.0%
!!! AGGTTCATAGTTTTTTTCGT+TGG - tig0023138:78200-78219 None:intergenic 30.0%
TAGAAGAAAAGAAAAGCGAA+TGG - tig0023138:78251-78270 None:intergenic 30.0%
TATAAAGCTCTTAACTCTAG+GGG + tig0023138:78374-78393 Msa1405480:CDS 30.0%
TTTGTGAATATTTCTTGCCA+TGG - tig0023138:78634-78653 None:intergenic 30.0%
!! TCACAAATATAGGTATCGAA+TGG + tig0023138:78647-78666 Msa1405480:CDS 30.0%
!! CACAAATATAGGTATCGAAT+GGG + tig0023138:78648-78667 Msa1405480:CDS 30.0%
!! ACAAATATAGGTATCGAATG+GGG + tig0023138:78649-78668 Msa1405480:CDS 30.0%
GATATAGAGAAGCTAAAGAT+GGG + tig0023138:78676-78695 Msa1405480:CDS 30.0%
! AACAGTTTTGCATACTATCT+TGG + tig0023138:79098-79117 Msa1405480:intron 30.0%
ATTCTATTAACTGCAGTATG+TGG - tig0023138:79184-79203 None:intergenic 30.0%
ACATACTGCAGTTAATAGAA+TGG + tig0023138:79183-79202 Msa1405480:intron 30.0%
AAGTGATGTGGAAAACTTAA+GGG + tig0023138:79376-79395 Msa1405480:CDS 30.0%
TGTATATTTAGTGCTACCAT+TGG + tig0023138:79608-79627 Msa1405480:three_prime_UTR 30.0%
ATGTATTGTGTGATCTCTTT+GGG + tig0023138:79882-79901 Msa1405480:three_prime_UTR 30.0%
TTGATATTGTGGAACAACTT+GGG - tig0023138:80065-80084 None:intergenic 30.0%
CTAACAGCTCATAATCAAAA+GGG - tig0023138:80269-80288 None:intergenic 30.0%
TCTAACAGCTCATAATCAAA+AGG - tig0023138:80270-80289 None:intergenic 30.0%
!! AAGAGTACTCAACAATTACA+TGG - tig0023138:80340-80359 None:intergenic 30.0%
GAAATGGCAAAGTAAAAAGG+AGG + tig0023138:74701-74720 Msa1405480:five_prime_UTR 35.0%
CATCATCATTAGATTAGACG+TGG + tig0023138:74750-74769 Msa1405480:five_prime_UTR 35.0%
TAGATGTTACCGTCATGAAT+AGG - tig0023138:74975-74994 None:intergenic 35.0%
TCAAACAACATACAGCTACA+AGG + tig0023138:75012-75031 Msa1405480:CDS 35.0%
ATATCTCAATTTGGGCAACA+CGG - tig0023138:75158-75177 None:intergenic 35.0%
GAGATATTCTCTCACTATGT+TGG + tig0023138:75171-75190 Msa1405480:CDS 35.0%
GTAAGTAGGAGGAGAAATAA+AGG - tig0023138:75219-75238 None:intergenic 35.0%
! TTCTGATTGAAAGTGTGTCT+CGG - tig0023138:75331-75350 None:intergenic 35.0%
! ACACTTTCAATCAGAAGTGT+CGG + tig0023138:75335-75354 Msa1405480:intron 35.0%
AGCTTTCGTTAAAATCAAGG+TGG + tig0023138:75465-75484 Msa1405480:intron 35.0%
TCTATATGTAAGTTTCCAGG+TGG + tig0023138:75543-75562 Msa1405480:intron 35.0%
GGGCTGATTAATTGTTTACA+TGG - tig0023138:75640-75659 None:intergenic 35.0%
TGGGGTAATGATTTCTAACA+GGG - tig0023138:75660-75679 None:intergenic 35.0%
TTGGGGTAATGATTTCTAAC+AGG - tig0023138:75661-75680 None:intergenic 35.0%
AAACATGAAACAAGGGATTG+GGG - tig0023138:75678-75697 None:intergenic 35.0%
GAAAACATGAAACAAGGGAT+TGG - tig0023138:75680-75699 None:intergenic 35.0%
AACTTGTCTATTATCACCCA+CGG - tig0023138:75891-75910 None:intergenic 35.0%
CTACTATTGCTGAAAGCTTA+GGG - tig0023138:75926-75945 None:intergenic 35.0%
TCTACTATTGCTGAAAGCTT+AGG - tig0023138:75927-75946 None:intergenic 35.0%
! GTGATGAAAAGCCTTATGAT+CGG + tig0023138:76147-76166 Msa1405480:intron 35.0%
CTTGGATATGTTTGGATTGA+TGG - tig0023138:76255-76274 None:intergenic 35.0%
! AGACATGTGGTTTAAAGTCT+TGG - tig0023138:76273-76292 None:intergenic 35.0%
GATTGCCAATAAAAGACATG+TGG - tig0023138:76286-76305 None:intergenic 35.0%
! TTTAGTTTCTGCAGTGTATG+GGG - tig0023138:76822-76841 None:intergenic 35.0%
! CTTTAGTTTCTGCAGTGTAT+GGG - tig0023138:76823-76842 None:intergenic 35.0%
! ACTTTAGTTTCTGCAGTGTA+TGG - tig0023138:76824-76843 None:intergenic 35.0%
! GTGTTTGGAACTTGTTTATG+TGG - tig0023138:76879-76898 None:intergenic 35.0%
!! GGTTTTGATGGTTTTTTGGA+GGG - tig0023138:76927-76946 None:intergenic 35.0%
!! AAAGTGAGGTGTTGTTATAG+GGG - tig0023138:76958-76977 None:intergenic 35.0%
!! GAAAGTGAGGTGTTGTTATA+GGG - tig0023138:76959-76978 None:intergenic 35.0%
!! AGAAAGTGAGGTGTTGTTAT+AGG - tig0023138:76960-76979 None:intergenic 35.0%
!!! GTGTTTTTCGGGTGTTTATT+TGG - tig0023138:76999-77018 None:intergenic 35.0%
! TGTTGGGATAAGTGTTTTTC+GGG - tig0023138:77010-77029 None:intergenic 35.0%
GGTGGACCGTTAAAAATAAT+TGG - tig0023138:77391-77410 None:intergenic 35.0%
CACAATTAGTCGACTGTAAT+CGG - tig0023138:77412-77431 None:intergenic 35.0%
GAGAGTAGCAAAGAATCTAA+AGG + tig0023138:77616-77635 Msa1405480:CDS 35.0%
GTATTGAAGTGGTAGAGTTA+AGG - tig0023138:77827-77846 None:intergenic 35.0%
CAACTGATGGAATTGAACAA+TGG - tig0023138:77854-77873 None:intergenic 35.0%
TTCAGATCATTTGCAACTGA+TGG - tig0023138:77867-77886 None:intergenic 35.0%
AACGAGTTTCCTATAGACAT+TGG + tig0023138:78023-78042 Msa1405480:intron 35.0%
!!! TCATAGTTTTTTTCGTTGGG+GGG - tig0023138:78196-78215 None:intergenic 35.0%
!!! ATGGTTTTGGCAGATCATTT+TGG + tig0023138:78291-78310 Msa1405480:intron 35.0%
!! CTAGTGACAGCTCTAAATAA+AGG + tig0023138:78549-78568 Msa1405480:CDS 35.0%
TACAAAAGGTTCCCATGATA+AGG - tig0023138:78598-78617 None:intergenic 35.0%
!! CAAATATAGGTATCGAATGG+GGG + tig0023138:78650-78669 Msa1405480:CDS 35.0%
GGATATAGAGAAGCTAAAGA+TGG + tig0023138:78675-78694 Msa1405480:CDS 35.0%
TTATTGGGAGCAAGTTAATG+AGG + tig0023138:78713-78732 Msa1405480:CDS 35.0%
TGATTCTCACAATCTACAAG+TGG + tig0023138:79211-79230 Msa1405480:CDS 35.0%
GATAAGCAGTTTAAATACCG+AGG + tig0023138:79262-79281 Msa1405480:CDS 35.0%
TAATGAAACCAACACTGCTA+TGG + tig0023138:79307-79326 Msa1405480:CDS 35.0%
AATGAAACCAACACTGCTAT+GGG + tig0023138:79308-79327 Msa1405480:CDS 35.0%
ACATTGTTCTTTCTCCTTCA+AGG + tig0023138:79351-79370 Msa1405480:CDS 35.0%
CAAGTGATGTGGAAAACTTA+AGG + tig0023138:79375-79394 Msa1405480:CDS 35.0%
!! CTACAACGAAGTCATTTTCT+TGG + tig0023138:79526-79545 Msa1405480:three_prime_UTR 35.0%
AGCTGAAAATAAAGCTCCAA+TGG - tig0023138:79627-79646 None:intergenic 35.0%
!!! AGTGTAGTTTTGGAGTCATT+TGG + tig0023138:79745-79764 Msa1405480:three_prime_UTR 35.0%
CAGTCAATTGAGTCATTTGT+AGG + tig0023138:79768-79787 Msa1405480:three_prime_UTR 35.0%
! TGATTTCAGCAACAAGTTGA+AGG + tig0023138:79802-79821 Msa1405480:three_prime_UTR 35.0%
! CTGAGAAGACATTTTGAACT+TGG + tig0023138:79838-79857 Msa1405480:three_prime_UTR 35.0%
GATGTATTGTGTGATCTCTT+TGG + tig0023138:79881-79900 Msa1405480:three_prime_UTR 35.0%
AGATAGATGATACAAGCTGT+TGG + tig0023138:79956-79975 Msa1405480:three_prime_UTR 35.0%
CTTGATATTGTGGAACAACT+TGG - tig0023138:80066-80085 None:intergenic 35.0%
CAAGTTGTTCCACAATATCA+AGG + tig0023138:80064-80083 Msa1405480:three_prime_UTR 35.0%
AAACGAGATCCTTGATATTG+TGG - tig0023138:80076-80095 None:intergenic 35.0%
! AAGCTTCAATCTTGTTTCCA+CGG - tig0023138:80198-80217 None:intergenic 35.0%
!! AAGTGGAAGCACTCAAGAAA+TGG + tig0023138:74685-74704 Msa1405480:five_prime_UTR 40.0%
! ATACAGCTACAAGGTACTAC+TGG + tig0023138:75021-75040 Msa1405480:CDS 40.0%
ATGTAAGTGGGGAATGATCT+TGG - tig0023138:75121-75140 None:intergenic 40.0%
TCGTGTGTAAAGTAAGTAGG+AGG - tig0023138:75230-75249 None:intergenic 40.0%
GTGTCGTGTGTAAAGTAAGT+AGG - tig0023138:75233-75252 None:intergenic 40.0%
TTCATCGTAACCACAAGTGT+CGG + tig0023138:75280-75299 Msa1405480:intron 40.0%
!! CATGCACTTACTAAGTTGGT+AGG - tig0023138:75380-75399 None:intergenic 40.0%
! TACAGTGTCACTGTAGTTCA+TGG + tig0023138:75428-75447 Msa1405480:intron 40.0%
! GGAAGATTTCAGGTAACTAC+AGG - tig0023138:75518-75537 None:intergenic 40.0%
!!! TTTTTTTTGGTGAGGAGGAG+TGG - tig0023138:75575-75594 None:intergenic 40.0%
ACATTTGAGCCAAGTCCAAA+GGG - tig0023138:75844-75863 None:intergenic 40.0%
AACATTTGAGCCAAGTCCAA+AGG - tig0023138:75845-75864 None:intergenic 40.0%
GACTTGGCTCAAATGTTTGT+TGG + tig0023138:75848-75867 Msa1405480:intron 40.0%
AAACAAATGGACAGTAGCCA+TGG - tig0023138:76452-76471 None:intergenic 40.0%
!!! GTCCATTTGTTTTTGCAGCT+AGG + tig0023138:76460-76479 Msa1405480:intron 40.0%
TGCCTAGCTGCAAAAACAAA+TGG - tig0023138:76465-76484 None:intergenic 40.0%
! GTTTTTGCAGCTAGGCAAAT+AGG + tig0023138:76468-76487 Msa1405480:intron 40.0%
!! AGGATTTGTTGATGCTAGTG+AGG + tig0023138:76488-76507 Msa1405480:CDS 40.0%
TTAGTTTCTGCAGTGTATGG+GGG - tig0023138:76821-76840 None:intergenic 40.0%
CAAAACCTCAAACTGTATCG+TGG + tig0023138:76849-76868 Msa1405480:intron 40.0%
!!! GATGGTTTTTTGGAGGGTTT+TGG - tig0023138:76921-76940 None:intergenic 40.0%
!! CGGTTTTGATGGTTTTTTGG+AGG - tig0023138:76928-76947 None:intergenic 40.0%
!! GGTCGGTTTTGATGGTTTTT+TGG - tig0023138:76931-76950 None:intergenic 40.0%
!! GTTGTTATAGGGGTTTTGGT+CGG - tig0023138:76948-76967 None:intergenic 40.0%
!!! AGGTGTTGTTATAGGGGTTT+TGG - tig0023138:76952-76971 None:intergenic 40.0%
!! ACTTTATCAGGGCCTTGTTA+TGG - tig0023138:77082-77101 None:intergenic 40.0%
! ATGTATTTTCGGTTGGGACT+CGG - tig0023138:77252-77271 None:intergenic 40.0%
! ATATTCTTTTGGCAGCCACA+AGG + tig0023138:77279-77298 Msa1405480:CDS 40.0%
AATTAGTCGACTGTAATCGG+TGG - tig0023138:77409-77428 None:intergenic 40.0%
!!! CATAGTTTTTTTCGTTGGGG+GGG - tig0023138:78195-78214 None:intergenic 40.0%
TAAAGGACGAGATGTGATCA+TGG + tig0023138:78566-78585 Msa1405480:CDS 40.0%
TCATGGATGGTACCTTATCA+TGG + tig0023138:78583-78602 Msa1405480:CDS 40.0%
CATGGATGGTACCTTATCAT+GGG + tig0023138:78584-78603 Msa1405480:CDS 40.0%
! CTTTGATTCGTGCTCTTCTT+CGG - tig0023138:78739-78758 None:intergenic 40.0%
CCAACTAGCACAATTCTGTA+GGG - tig0023138:78795-78814 None:intergenic 40.0%
ACCAACTAGCACAATTCTGT+AGG - tig0023138:78796-78815 None:intergenic 40.0%
!! TTGCTGTTGTTAGAGGCATT+AGG + tig0023138:78835-78854 Msa1405480:CDS 40.0%
GAGAGCTATCATGACAAGAA+GGG + tig0023138:78947-78966 Msa1405480:CDS 40.0%
! AAACTGTTTGCTACCTTTGG+TGG - tig0023138:79086-79105 None:intergenic 40.0%
! GCAAAACTGTTTGCTACCTT+TGG - tig0023138:79089-79108 None:intergenic 40.0%
ACCTGAAGTTCTCAAATGCT+TGG + tig0023138:79235-79254 Msa1405480:CDS 40.0%
TCCAAGCATTTGAGAACTTC+AGG - tig0023138:79239-79258 None:intergenic 40.0%
TCTATGGTTTAACATCAGCG+TGG + tig0023138:79491-79510 Msa1405480:three_prime_UTR 40.0%
CTATGGTTTAACATCAGCGT+GGG + tig0023138:79492-79511 Msa1405480:three_prime_UTR 40.0%
TAGATGATACAAGCTGTTGG+AGG + tig0023138:79959-79978 Msa1405480:three_prime_UTR 40.0%
CAGGAAGATGAAGAAAGAAG+AGG + tig0023138:80015-80034 Msa1405480:three_prime_UTR 40.0%
ACACGTTCTTCGTCACTTCT+TGG - tig0023138:74833-74852 None:intergenic 45.0%
! AGACGTGTCATTCTGCTTTG+TGG - tig0023138:74864-74883 None:intergenic 45.0%
! CAAGGTACTACTGGTAGTGT+TGG + tig0023138:75030-75049 Msa1405480:CDS 45.0%
!! TACCACCATTGATTCGACGA+TGG - tig0023138:75094-75113 None:intergenic 45.0%
GATGCGGTTTGATGTAAGTG+GGG - tig0023138:75132-75151 None:intergenic 45.0%
GGATGCGGTTTGATGTAAGT+GGG - tig0023138:75133-75152 None:intergenic 45.0%
CACTTACATCAAACCGCATC+CGG + tig0023138:75132-75151 Msa1405480:CDS 45.0%
! CTCGAGCAACTTGTTCACTT+AGG - tig0023138:75797-75816 None:intergenic 45.0%
AAGTGAACAAGTTGCTCGAG+TGG + tig0023138:75797-75816 Msa1405480:intron 45.0%
AGTGAACAAGTTGCTCGAGT+GGG + tig0023138:75798-75817 Msa1405480:intron 45.0%
! TGTTTGTTGGTCTGCGATTC+CGG + tig0023138:75861-75880 Msa1405480:intron 45.0%
TCAACCAATTGTGCCTACGT+AGG - tig0023138:75989-76008 None:intergenic 45.0%
GGTTCCAGAGTTATGCAGAT+TGG + tig0023138:76509-76528 Msa1405480:CDS 45.0%
TGTGCCAATCTGCATAACTC+TGG - tig0023138:76516-76535 None:intergenic 45.0%
AGAGTTATGCAGATTGGCAC+AGG + tig0023138:76515-76534 Msa1405480:CDS 45.0%
TCAATATCTAGCCAACGGAG+AGG + tig0023138:76578-76597 Msa1405480:CDS 45.0%
GTCATCCACGATACAGTTTG+AGG - tig0023138:76857-76876 None:intergenic 45.0%
AGTTGCATGCGATAGGTGTT+TGG - tig0023138:76894-76913 None:intergenic 45.0%
TGTTATGGTGTCTTCTCCAG+CGG - tig0023138:77067-77086 None:intergenic 45.0%
CTGGAGAAGACACCATAACA+AGG + tig0023138:77067-77086 Msa1405480:intron 45.0%
CTCTCAAAGTTGTGACGTCA+AGG + tig0023138:77691-77710 Msa1405480:CDS 45.0%
! AGTCCAGTGTTGCTGCTTAT+GGG + tig0023138:77740-77759 Msa1405480:CDS 45.0%
! GTCTGAAGCTTCAAATGCTG+TGG + tig0023138:78313-78332 Msa1405480:CDS 45.0%
CGTTGAAGCTGATGCGTTTA+AGG + tig0023138:78337-78356 Msa1405480:CDS 45.0%
CATGCTCGAAACTGCTGAAT+TGG + tig0023138:78409-78428 Msa1405480:CDS 45.0%
GCTATCGTCTGCTCTACAAA+AGG - tig0023138:78612-78631 None:intergenic 45.0%
! CGAAGAAGAGCACGAATCAA+AGG + tig0023138:78737-78756 Msa1405480:CDS 45.0%
CCCTACAGAATTGTGCTAGT+TGG + tig0023138:78792-78811 Msa1405480:CDS 45.0%
! CAGAATTGTGCTAGTTGGTG+TGG + tig0023138:78797-78816 Msa1405480:CDS 45.0%
! CTAGTTGGTGTGGTTTGTGA+TGG + tig0023138:78807-78826 Msa1405480:CDS 45.0%
!! GGCTATCTTGCTGTTGTTAG+AGG + tig0023138:78828-78847 Msa1405480:CDS 45.0%
GGAGAGCTATCATGACAAGA+AGG + tig0023138:78946-78965 Msa1405480:intron 45.0%
AGTGAGGGTGAAATCACAAC+TGG + tig0023138:78971-78990 Msa1405480:CDS 45.0%
!! GCAAACTTGTTGACAGTGCA+AGG + tig0023138:79033-79052 Msa1405480:CDS 45.0%
TATTACACGACTGATGTCCG+TGG + tig0023138:79059-79078 Msa1405480:CDS 45.0%
TTCGTAGATGGAATCTGCCT+CGG - tig0023138:79282-79301 None:intergenic 45.0%
ATGTCATTCCAAACAGTGCC+AGG - tig0023138:79335-79354 None:intergenic 45.0%
TCCTTCAAGGTCAAGTGATG+TGG + tig0023138:79364-79383 Msa1405480:CDS 45.0%
TCCACATCACTTGACCTTGA+AGG - tig0023138:79368-79387 None:intergenic 45.0%
TAACATCAGCGTGGGAAACA+AGG + tig0023138:79500-79519 Msa1405480:three_prime_UTR 45.0%
AGTGCAGAAAACCAACACCT+AGG - tig0023138:80128-80147 None:intergenic 45.0%
! TTTTCTGCACTGAGAAGCTG+AGG + tig0023138:80137-80156 Msa1405480:three_prime_UTR 45.0%
TCCAAACTGAAGATTCACCG+TGG + tig0023138:80178-80197 Msa1405480:three_prime_UTR 45.0%
TCCACGGTGAATCTTCAGTT+TGG - tig0023138:80182-80201 None:intergenic 45.0%
!!! TTTTAATAGAAAAATATAAA+TGG - tig0023138:77473-77492 None:intergenic 5.0%
GAGCAACCTCACACATGTTG+TGG + tig0023138:75062-75081 Msa1405480:CDS 50.0%
AGCCTCCATCGTCGAATCAA+TGG + tig0023138:75086-75105 Msa1405480:CDS 50.0%
!! CACCATTGATTCGACGATGG+AGG - tig0023138:75091-75110 None:intergenic 50.0%
CTCCATCGTCGAATCAATGG+TGG + tig0023138:75089-75108 Msa1405480:CDS 50.0%
CGGATGCGGTTTGATGTAAG+TGG - tig0023138:75134-75153 None:intergenic 50.0%
!! GTAACCACAAGTGTCGGTGT+CGG + tig0023138:75286-75305 Msa1405480:intron 50.0%
! GTTTGTTGGTCTGCGATTCC+GGG + tig0023138:75862-75881 Msa1405480:intron 50.0%
! TTTGTTGGTCTGCGATTCCG+GGG + tig0023138:75863-75882 Msa1405480:intron 50.0%
CGCTTCCACTCTGTAGTTAG+AGG + tig0023138:75958-75977 Msa1405480:intron 50.0%
CTACGCCTCTAACTACAGAG+TGG - tig0023138:75966-75985 None:intergenic 50.0%
GTAGCCTACGTAGGCACAAT+TGG + tig0023138:75982-76001 Msa1405480:intron 50.0%
TGAATTAGGGTCCTCTCCGT+TGG - tig0023138:76592-76611 None:intergenic 50.0%
TTCTGCAGTGTATGGGGGTT+TGG - tig0023138:76816-76835 None:intergenic 50.0%
TGGTGTGAGTTGCATGCGAT+AGG - tig0023138:76901-76920 None:intergenic 50.0%
!! GGGGTTTTGGTCGGTTTTGA+TGG - tig0023138:76939-76958 None:intergenic 50.0%
ACTCCTCTCACTGTGGACAA+CGG - tig0023138:77723-77742 None:intergenic 50.0%
! GAGTCCAGTGTTGCTGCTTA+TGG + tig0023138:77739-77758 Msa1405480:CDS 50.0%
CAGTTTCGAGCATGTCGTCA+TGG - tig0023138:78403-78422 None:intergenic 50.0%
CAGAGATGATGCAGCATCAG+TGG - tig0023138:78529-78548 None:intergenic 50.0%
GGACGAGATGTGATCATGGA+TGG + tig0023138:78570-78589 Msa1405480:CDS 50.0%
TGTAGAGCAGACGATAGCCA+TGG + tig0023138:78614-78633 Msa1405480:CDS 50.0%
!! TATAGGTATCGAATGGGGGC+AGG + tig0023138:78654-78673 Msa1405480:CDS 50.0%
TCATGACAAGAAGGGCAGTG+AGG + tig0023138:78955-78974 Msa1405480:CDS 50.0%
CATGACAAGAAGGGCAGTGA+GGG + tig0023138:78956-78975 Msa1405480:CDS 50.0%
! TTGCTACCTTTGGTGGACCA+CGG - tig0023138:79079-79098 None:intergenic 50.0%
ACACATCTTGCACATCGTGC+AGG + tig0023138:79996-80015 Msa1405480:three_prime_UTR 50.0%
AACAGCTCAGACCTAGGTGT+TGG + tig0023138:80114-80133 Msa1405480:three_prime_UTR 50.0%
AGGCTGCCACAACATGTGTG+AGG - tig0023138:75071-75090 None:intergenic 55.0%
CTCAATTTGGGCAACACGGC+CGG - tig0023138:75154-75173 None:intergenic 55.0%
GTGTCGGACACGACATGTGT+TGG + tig0023138:75302-75321 Msa1405480:intron 55.0%
GTCCAAAGGGCAATCGCTCT+CGG - tig0023138:75831-75850 None:intergenic 55.0%
GAGCGATTGCCCTTTGGACT+TGG + tig0023138:75832-75851 Msa1405480:intron 55.0%
TATTATCACCCACGGCACCC+CGG - tig0023138:75883-75902 None:intergenic 55.0%
! GTTAGAGGCGTAGCCTACGT+AGG + tig0023138:75973-75992 Msa1405480:intron 55.0%
!! TGGGGGTTTGGCGTTGGTTT+CGG - tig0023138:76804-76823 None:intergenic 55.0%
AGTGTATGGGGGTTTGGCGT+TGG - tig0023138:76810-76829 None:intergenic 55.0%
TTCCACTACCAATCGACCCC+CGG + tig0023138:77040-77059 Msa1405480:intron 55.0%
ACACTGGACTCCTCTCACTG+TGG - tig0023138:77730-77749 None:intergenic 55.0%
CCACCCATAAGCAGCAACAC+TGG - tig0023138:77746-77765 None:intergenic 55.0%
! CCAGTGTTGCTGCTTATGGG+TGG + tig0023138:77743-77762 Msa1405480:CDS 55.0%
! GTGTTGCTGCTTATGGGTGG+AGG + tig0023138:77746-77765 Msa1405480:CDS 55.0%
! CTGCTTATGGGTGGAGGCAT+GGG + tig0023138:77752-77771 Msa1405480:CDS 55.0%
TGATGTCCGTGGTCCACCAA+AGG + tig0023138:79070-79089 Msa1405480:CDS 55.0%
ACCAACACTGCTATGGGACC+TGG + tig0023138:79314-79333 Msa1405480:CDS 55.0%
CTATGGGACCTGGCACTGTT+TGG + tig0023138:79324-79343 Msa1405480:CDS 55.0%
CCTAGGTCTGAGCTGTTCAC+TGG - tig0023138:80111-80130 None:intergenic 55.0%
CCAGTGAACAGCTCAGACCT+AGG + tig0023138:80108-80127 Msa1405480:three_prime_UTR 55.0%
GTGTCCGACACCGACACTTG+TGG - tig0023138:75293-75312 None:intergenic 60.0%
GAGGAGTGGCAAACACCACC+TGG - tig0023138:75561-75580 None:intergenic 60.0%
AGCCGAGAGCGATTGCCCTT+TGG + tig0023138:75826-75845 Msa1405480:intron 60.0%
!! GGGTTTGGCGTTGGTTTCGG+TGG - tig0023138:76801-76820 None:intergenic 60.0%
TGGTGTCTTCTCCAGCGGAC+CGG - tig0023138:77062-77081 None:intergenic 60.0%
CCTCTCACTGTGGACAACGG+CGG - tig0023138:77720-77739 None:intergenic 60.0%
GCTGCTTATGGGTGGAGGCA+TGG + tig0023138:77751-77770 Msa1405480:CDS 60.0%
! ATGGGTGGAGGCATGGGATC+TGG + tig0023138:77758-77777 Msa1405480:CDS 60.0%
GCCAGGTCCCATAGCAGTGT+TGG - tig0023138:79318-79337 None:intergenic 60.0%
TTGGGCAACACGGCCGGATG+CGG - tig0023138:75148-75167 None:intergenic 65.0%
GACCGGGGGTCGATTGGTAG+TGG - tig0023138:77045-77064 None:intergenic 65.0%
TGTCTTCTCCAGCGGACCGG+GGG - tig0023138:77059-77078 None:intergenic 65.0%
GTGTCTTCTCCAGCGGACCG+GGG - tig0023138:77060-77079 None:intergenic 65.0%
GGTGTCTTCTCCAGCGGACC+GGG - tig0023138:77061-77080 None:intergenic 65.0%
CCGCCGTTGTCCACAGTGAG+AGG + tig0023138:77717-77736 Msa1405480:CDS 65.0%
!! TCTGCGATTCCGGGGTGCCG+TGG + tig0023138:75871-75890 Msa1405480:intron 70.0%
!! CTGCGATTCCGGGGTGCCGT+GGG + tig0023138:75872-75891 Msa1405480:intron 70.0%
CCAGCGGACCGGGGGTCGAT+TGG - tig0023138:77051-77070 None:intergenic 75.0%
CCAATCGACCCCCGGTCCGC+TGG + tig0023138:77048-77067 Msa1405480:intron 75.0%
Chromosome Type Strat End Strand Name
tig0023138 gene 74677 80376 74677 ID=Msa1405480;Name=Msa1405480
tig0023138 mRNA 74677 80376 74677 ID=Msa1405480-mRNA-1;Parent=Msa1405480;Name=Msa1405480-mRNA-1;_AED=0.27;_eAED=0.27;_QI=302|1|1|1|1|1|8|937|524
tig0023138 exon 74677 75192 74677 ID=Msa1405480-mRNA-1:exon:24106;Parent=Msa1405480-mRNA-1
tig0023138 exon 76478 76701 76478 ID=Msa1405480-mRNA-1:exon:24107;Parent=Msa1405480-mRNA-1
tig0023138 exon 77239 77300 77239 ID=Msa1405480-mRNA-1:exon:24108;Parent=Msa1405480-mRNA-1
tig0023138 exon 77601 77813 77601 ID=Msa1405480-mRNA-1:exon:24109;Parent=Msa1405480-mRNA-1
tig0023138 exon 78304 78430 78304 ID=Msa1405480-mRNA-1:exon:24110;Parent=Msa1405480-mRNA-1
tig0023138 exon 78513 78856 78513 ID=Msa1405480-mRNA-1:exon:24111;Parent=Msa1405480-mRNA-1
tig0023138 exon 78947 79091 78947 ID=Msa1405480-mRNA-1:exon:24112;Parent=Msa1405480-mRNA-1
tig0023138 exon 79194 80376 79194 ID=Msa1405480-mRNA-1:exon:24113;Parent=Msa1405480-mRNA-1
tig0023138 five_prime_UTR 74677 74978 74677 ID=Msa1405480-mRNA-1:five_prime_utr;Parent=Msa1405480-mRNA-1
tig0023138 CDS 74979 75192 74979 ID=Msa1405480-mRNA-1:cds;Parent=Msa1405480-mRNA-1
tig0023138 CDS 76478 76701 76478 ID=Msa1405480-mRNA-1:cds;Parent=Msa1405480-mRNA-1
tig0023138 CDS 77239 77300 77239 ID=Msa1405480-mRNA-1:cds;Parent=Msa1405480-mRNA-1
tig0023138 CDS 77601 77813 77601 ID=Msa1405480-mRNA-1:cds;Parent=Msa1405480-mRNA-1
tig0023138 CDS 78304 78430 78304 ID=Msa1405480-mRNA-1:cds;Parent=Msa1405480-mRNA-1
tig0023138 CDS 78513 78856 78513 ID=Msa1405480-mRNA-1:cds;Parent=Msa1405480-mRNA-1
tig0023138 CDS 78947 79091 78947 ID=Msa1405480-mRNA-1:cds;Parent=Msa1405480-mRNA-1
tig0023138 CDS 79194 79439 79194 ID=Msa1405480-mRNA-1:cds;Parent=Msa1405480-mRNA-1
tig0023138 three_prime_UTR 79440 80376 79440 ID=Msa1405480-mRNA-1:three_prime_utr;Parent=Msa1405480-mRNA-1
Gene Sequence

>Msa1405480

ATGACGGTAACATCTATTTGTGATTCTCAATCTTCAAACAACATACAGCTACAAGGTACTACTGGTAGTGTTGGTAATGTGATGAGCAACCTCACACATGTTGTGGCAGCCTCCATCGTCGAATCAATGGTGGTAGACTCCAAGATCATTCCCCACTTACATCAAACCGCATCCGGCCGTGTTGCCCAAATTGAGATATTCTCTCACTATGTTGCTAGGCAAATAGGATTTGTTGATGCTAGTGAGGTTCCAGAGTTATGCAGATTGGCACAGGACTACTTGAGAAATTCTGAAGAGTGTAAAGAAAGTATCTATCAATATCTAGCCAACGGAGAGGACCCTAATTCACTATATGCAAAATTGATTGATGAGTTTGAAAGATGCATCCTCAGTTATTTCGCTTTTCATTGGAACCAAGCTTCATATATCATTAGTCAGGTATTGAGTACCGAGTCCCAACCGAAAATACATCTCAAAAATATTCTTTTGGCAGCCACAAGGGAACATAGATTTAAGAGAGTAGCAAAGAATCTAAAGGTGACAAGAGTGTTCTCTACTTTAGTAGAAGAGATTAAAGCAATAAAGGGAGACTCTCAAAGTTGTGACGTCAAGGACTCCGCCGTTGTCCACAGTGAGAGGAGTCCAGTGTTGCTGCTTATGGGTGGAGGCATGGGATCTGGAAAAAGCTATGTTCTTAAAGACATTCTAAAAGAATCATTTTGGTCTGAAGCTTCAAATGCTGTGGTCGTTGAAGCTGATGCGTTTAAGGAGAGTGATGTCATATATAAAGCTCTTAACTCTAGGGGTCACCATGACGACATGCTCGAAACTGCTGAATTGGTGCATCAGTCTTCCACTGATGCTGCATCATCTCTGCTAGTGACAGCTCTAAATAAAGGACGAGATGTGATCATGGATGGTACCTTATCATGGGAACCTTTTGTAGAGCAGACGATAGCCATGGCAAGAAATATTCACAAATATAGGTATCGAATGGGGGCAGGATATAGAGAAGCTAAAGATGGGACAATAACTGAAAATTATTGGGAGCAAGTTAATGAGGCCGAAGAAGAGCACGAATCAAAGGAAAATTATAAAAGGGAACTACACACTCGAAAGCCCTACAGAATTGTGCTAGTTGGTGTGGTTTGTGATGGCTATCTTGCTGTTGTTAGAGGCATTAGGAGAGCTATCATGACAAGAAGGGCAGTGAGGGTGAAATCACAACTGGAATCTCACAAAAGATTTGCTAATGCATTTCCAAAATATTGCAAACTTGTTGACAGTGCAAGGCTCTATTACACGACTGATGTCCGTGGTCCACCAAAGTTAATAGAATGGACGAATGATTCTCACAATCTACAAGTGGAACCTGAAGTTCTCAAATGCTTGGAAATGATAAGCAGTTTAAATACCGAGGCAGATTCCATCTACGAACTTTATAATGAAACCAACACTGCTATGGGACCTGGCACTGTTTGGAATGACATTGTTCTTTCTCCTTCAAGGTCAAGTGATGTGGAAAACTTAAGGGAATCCATTCTGAAAATAGAAAAAACCATCAAAAAACAATAA
Protein sequence

>Msa1405480

MTVTSICDSQSSNNIQLQGTTGSVGNVMSNLTHVVAASIVESMVVDSKIIPHLHQTASGRVAQIEIFSHYVARQIGFVDASEVPELCRLAQDYLRNSEECKESIYQYLANGEDPNSLYAKLIDEFERCILSYFAFHWNQASYIISQVLSTESQPKIHLKNILLAATREHRFKRVAKNLKVTRVFSTLVEEIKAIKGDSQSCDVKDSAVVHSERSPVLLLMGGGMGSGKSYVLKDILKESFWSEASNAVVVEADAFKESDVIYKALNSRGHHDDMLETAELVHQSSTDAASSLLVTALNKGRDVIMDGTLSWEPFVEQTIAMARNIHKYRYRMGAGYREAKDGTITENYWEQVNEAEEEHESKENYKRELHTRKPYRIVLVGVVCDGYLAVVRGIRRAIMTRRAVRVKSQLESHKRFANAFPKYCKLVDSARLYYTTDVRGPPKLIEWTNDSHNLQVEPEVLKCLEMISSLNTEADSIYELYNETNTAMGPGTVWNDIVLSPSRSSDVENLRESILKIEKTIKKQ*