AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0641020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641020 MtrunA17_Chr4g0025521 95.512 713 29 2 54 765 1 711 0.0 1315
Msa0641020 MtrunA17_Chr7g0267481 44.953 743 295 23 54 765 1 660 1.11e-164 491
Msa0641020 MtrunA17_Chr1g0177751 46.269 737 283 28 54 765 1 649 4.19e-163 486
Msa0641020 MtrunA17_Chr3g0141941 44.893 421 173 15 145 547 56 435 1.02e-94 304
Msa0641020 MtrunA17_Chr1g0155681 58.052 267 97 4 273 531 172 431 2.04e-94 307
Msa0641020 MtrunA17_Chr8g0373801 50.890 281 131 3 271 545 388 667 1.15e-82 281
Msa0641020 MtrunA17_Chr5g0403251 50.000 292 137 5 261 547 329 616 1.09e-77 265
Msa0641020 MtrunA17_Chr8g0387321 52.708 277 118 3 271 541 185 454 1.90e-77 261
Msa0641020 MtrunA17_Chr3g0141931 45.172 290 141 4 264 545 158 437 3.23e-71 239
Msa0641020 MtrunA17_Chr4g0028701 39.506 324 144 5 271 548 245 562 1.50e-63 224
Msa0641020 MtrunA17_Chr4g0008591 42.908 282 124 4 271 544 196 448 1.48e-61 218
Msa0641020 MtrunA17_Chr7g0240371 43.590 273 133 6 271 539 137 392 1.14e-59 210
Msa0641020 MtrunA17_Chr2g0327021 37.910 335 176 8 253 563 227 553 1.26e-58 210
Msa0641020 MtrunA17_Chr1g0151681 36.336 333 172 9 234 538 186 506 5.06e-52 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641020 AT2G35940.3 42.668 757 312 27 54 765 1 680 4.34e-134 413
Msa0641020 AT2G35940.1 42.668 757 312 27 54 765 1 680 4.34e-134 413
Msa0641020 AT2G35940.2 42.668 757 312 27 54 765 1 680 4.34e-134 413
Msa0641020 AT2G16400.1 49.077 379 152 10 204 577 57 399 9.28e-97 309
Msa0641020 AT4G34610.2 50.568 352 143 10 230 571 94 424 6.73e-95 306
Msa0641020 AT4G34610.4 50.568 352 143 10 230 571 94 424 6.73e-95 306
Msa0641020 AT4G34610.3 50.568 352 143 10 230 571 94 424 6.73e-95 306
Msa0641020 AT4G34610.1 50.568 352 143 10 230 571 94 424 6.73e-95 306
Msa0641020 AT1G75410.1 52.703 296 99 8 260 537 160 432 1.12e-87 286
Msa0641020 AT1G75410.2 52.703 296 99 8 260 537 160 432 1.12e-87 286
Msa0641020 AT1G19700.1 53.069 277 99 6 272 532 166 427 7.20e-87 285
Msa0641020 AT1G19700.3 53.069 277 99 6 272 532 166 427 7.20e-87 285
Msa0641020 AT1G19700.5 53.069 277 99 6 272 532 166 427 7.20e-87 285
Msa0641020 AT1G19700.4 53.069 277 99 6 272 532 166 427 7.20e-87 285
Msa0641020 AT1G19700.2 53.069 277 99 6 272 532 166 427 7.20e-87 285
Msa0641020 AT2G27220.1 46.648 358 144 9 201 556 12 324 1.21e-85 278
Msa0641020 AT2G27220.3 46.648 358 144 9 201 556 12 324 1.21e-85 278
Msa0641020 AT2G27220.2 44.415 376 144 10 201 556 12 342 1.43e-81 268
Msa0641020 AT2G23760.2 52.809 267 112 3 263 523 233 491 5.89e-80 269
Msa0641020 AT2G23760.1 52.809 267 112 3 263 523 233 491 5.89e-80 269
Msa0641020 AT2G23760.3 52.809 267 112 3 263 523 233 491 5.89e-80 269
Msa0641020 AT2G23760.4 44.201 319 112 4 263 523 233 543 2.92e-70 244
Msa0641020 AT1G75410.3 50.973 257 90 7 260 503 160 393 4.56e-70 236
Msa0641020 AT5G41410.1 46.014 276 130 3 272 531 194 466 3.16e-68 236
Msa0641020 AT4G36870.4 47.500 240 115 3 271 504 312 546 1.41e-62 219
Msa0641020 AT4G36870.3 47.059 238 115 3 271 502 312 544 1.82e-61 217
Msa0641020 AT1G75430.1 40.484 289 146 8 265 536 10 289 3.29e-60 205
Msa0641020 AT5G02030.1 41.137 299 123 4 252 527 151 419 2.52e-59 211
Msa0641020 AT4G32980.1 37.460 315 165 7 232 533 154 449 2.38e-51 186
Msa0641020 AT4G32980.2 37.460 315 165 7 232 533 154 449 2.38e-51 186
Msa0641020 AT2G27990.1 38.562 306 152 8 229 528 221 496 3.37e-49 183
Msa0641020 AT1G75430.2 35.526 228 128 7 265 482 10 228 4.82e-32 126
Msa0641020 AT2G27990.2 31.154 260 143 8 229 482 221 450 2.40e-23 104

Find 226 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCTTTAACGTGTAATT+TGG 0.155568 4_3:+40664056 None:intergenic
AGAAAGATTAATGGAACTTT+TGG 0.208355 4_3:+40664605 None:intergenic
GCATGAATGTAATTTGTATT+TGG 0.245393 4_3:-40657876 Msa0641020:three_prime_UTR
TGATGTTGACATTGAATTAT+TGG 0.252974 4_3:+40658705 None:intergenic
CAAAATCACATATAATTTCT+AGG 0.265756 4_3:+40658141 None:intergenic
ATTCCACCTTCCAACTTTCA+TGG 0.270274 4_3:-40663730 Msa0641020:CDS
CTCTCTCAGAATTTACATTT+AGG 0.274546 4_3:-40658307 Msa0641020:CDS
GGGTCCTTTCAATCCAATTC+TGG 0.288442 4_3:-40658664 Msa0641020:CDS
AATTCTGGTTTCCATCTTGC+AGG 0.297418 4_3:-40658649 Msa0641020:CDS
GTGTTAAGTTAGAAGGTTCT+AGG 0.298713 4_3:-40661297 Msa0641020:CDS
TCTTGCAAGCATAACCTTAT+CGG 0.300640 4_3:+40659721 None:intergenic
ACAAATAGATCAAAAGAATT+AGG 0.307786 4_3:-40658817 Msa0641020:CDS
TCACTGTTGGAGAAAGGTTT+TGG 0.308937 4_3:+40658737 None:intergenic
AGGAGGGACGATTGATGAAA+TGG 0.313418 4_3:-40658287 Msa0641020:CDS
TTTGAGCAAGCAACAGGATA+TGG 0.320173 4_3:-40661445 Msa0641020:CDS
TGCTTGGGTGTTAAGTTAGA+AGG 0.330959 4_3:-40661304 Msa0641020:CDS
TTGCTTTGAGATTGTCTTCA+AGG 0.335235 4_3:+40661396 None:intergenic
TCAGAGTAAGGTACGTAGTT+TGG 0.340254 4_3:+40663898 None:intergenic
GGTTCTCCCCACGCGCTTCA+TGG 0.344045 4_3:-40663811 Msa0641020:CDS
CTTCGCAGCAAACGCCTTAC+CGG 0.347714 4_3:-40663444 Msa0641020:CDS
TTGCTAGCTCTATTATGATT+GGG 0.355291 4_3:+40664648 None:intergenic
ATTGCTAGCTCTATTATGAT+TGG 0.358539 4_3:+40664647 None:intergenic
TCAAGGTAGTTTCCTTTCAA+TGG 0.367613 4_3:-40658590 Msa0641020:CDS
GAGTTTCGCCCGCAGCAAAT+TGG 0.368022 4_3:-40663511 Msa0641020:CDS
GACAAACCACGCTGATAAAC+TGG 0.368350 4_3:+40663478 None:intergenic
AATCATCATGGTGGTGGTTA+TGG 0.369811 4_3:-40658469 Msa0641020:CDS
TACATACTTTAATATGGTAT+TGG 0.369864 4_3:-40657985 Msa0641020:three_prime_UTR
GTTATGCTTGCAAGACAAAC+TGG 0.371730 4_3:-40659713 Msa0641020:CDS
TGATCTATTTGTGTTATCCT+TGG 0.372128 4_3:+40658828 None:intergenic
GGAGGGACGATTGATGAAAT+GGG 0.373488 4_3:-40658286 Msa0641020:CDS
GGGAGCGGAAGAAAGATTAA+TGG 0.375540 4_3:+40664596 None:intergenic
CTGTTTCTGTTCTTCGTGCT+TGG 0.376721 4_3:-40661171 Msa0641020:CDS
CACTATAACATGTGGGGATC+AGG 0.378783 4_3:-40663619 Msa0641020:CDS
AGAATTAATTCTGACAGATA+TGG 0.379407 4_3:-40664013 Msa0641020:CDS
ATTATTAATAAGCGTCTGTT+TGG 0.380212 4_3:+40658048 None:intergenic
CAAGACAAACTGGACTTACT+AGG 0.381649 4_3:-40659703 Msa0641020:CDS
TCTCAATGGAAGATGTTAGA+AGG 0.381842 4_3:-40658441 Msa0641020:CDS
ATATCACACTTTGCATTTGA+TGG 0.388198 4_3:+40661473 None:intergenic
CAAGTTGAGTTGGATTAAGT+TGG 0.389678 4_3:-40658016 Msa0641020:three_prime_UTR
TTTCATTTCCACTCAATAAA+GGG 0.390624 4_3:+40658491 None:intergenic
GAAATCCAACCGTCGGTAGA+AGG 0.392044 4_3:-40663946 Msa0641020:CDS
ACGGTAGCCGAGGAGGAAAA+TGG 0.396762 4_3:+40663655 None:intergenic
ATTATTCTCCTCTTGCTCCT+TGG 0.402178 4_3:+40658855 None:intergenic
GTTGCTGTGACAGCGTTATC+AGG 0.403199 4_3:+40663586 None:intergenic
TAAGACAGCTAGCAAGACTT+TGG 0.403443 4_3:-40661338 Msa0641020:CDS
ACGCCTTACCGGTCGGCCTC+TGG 0.404712 4_3:-40663433 Msa0641020:CDS
CATAACCTTATCGGAGTCCT+TGG 0.408384 4_3:+40659730 None:intergenic
CTGATCCCCACATGTTATAG+TGG 0.410131 4_3:+40663620 None:intergenic
AAAGTGATGTGTATGGGATT+TGG 0.412182 4_3:-40657778 Msa0641020:three_prime_UTR
TGCAAGATGGAAACCAGAAT+TGG 0.412205 4_3:+40658651 None:intergenic
AAGGTATACATACTTTAATA+TGG 0.412519 4_3:-40657991 Msa0641020:three_prime_UTR
GATATGGCAACGTACTTTCA+TGG 0.416361 4_3:-40663997 Msa0641020:CDS
AACGCTACCACTAACAATAA+TGG 0.417083 4_3:-40663832 Msa0641020:CDS
GCTGCAGTGCCCGCTGTTGT+CGG 0.418316 4_3:+40661251 None:intergenic
ATTTGCTGCGGGCGAAACTC+TGG 0.420271 4_3:+40663514 None:intergenic
AGTTAGAAGGTTCTAGGCTT+CGG 0.429264 4_3:-40661291 Msa0641020:CDS
TTGAAAGGAAACTACCTTGA+TGG 0.429916 4_3:+40658593 None:intergenic
AACACTACTCCTTCTCATTC+AGG 0.436567 4_3:-40658235 Msa0641020:CDS
AATGGTGTTTCTCTAACTCT+TGG 0.436577 4_3:-40658379 Msa0641020:CDS
TTGATATTGAAAACAGAAAG+AGG 0.441083 4_3:-40658195 Msa0641020:CDS
AAGCTTGTTAATTTGAAGCT+TGG 0.443810 4_3:+40664137 None:intergenic
CTTTCTTCCGCTCCCTGTGC+GGG 0.446801 4_3:-40664588 Msa0641020:five_prime_UTR
TGGTGAGATTGAGGTATCTC+CGG 0.447805 4_3:-40663413 Msa0641020:CDS
GGGAGAACCATTATTGTTAG+TGG 0.451641 4_3:+40663825 None:intergenic
TCATCATTTGAGCAAGCAAC+AGG 0.451763 4_3:-40661451 Msa0641020:CDS
CTCAATCAACACCACTTGCT+TGG 0.452628 4_3:-40663760 Msa0641020:CDS
TTGAGATTGTCTTCAAGGCT+AGG 0.454466 4_3:+40661401 None:intergenic
GCTCCTAGGTTCCATGGAAA+TGG 0.455886 4_3:-40658397 Msa0641020:CDS
TTGAAGTTTCAACAAAATCC+TGG 0.456383 4_3:-40658104 Msa0641020:three_prime_UTR
TTGAAATCACTGTTGGAGAA+AGG 0.457475 4_3:+40658731 None:intergenic
AAGACAGCTAGCAAGACTTT+GGG 0.459364 4_3:-40661337 Msa0641020:CDS
TTGGGTGAAGATGATTGCTT+GGG 0.462431 4_3:-40661319 Msa0641020:CDS
TTGGAACTTGAAATCACTGT+TGG 0.463404 4_3:+40658724 None:intergenic
CAGCGGGCACTGCAGCAACT+TGG 0.465763 4_3:-40661244 Msa0641020:CDS
TTAACGTGTAATTTGGATTG+TGG 0.467877 4_3:+40664063 None:intergenic
TTAGTGAGCAATTAGCTCCT+AGG 0.468409 4_3:-40658411 Msa0641020:CDS
GTACGTAGTTTGGATTCATA+AGG 0.468791 4_3:+40663908 None:intergenic
TGAAGTTGTGAATGTGGATA+AGG 0.475584 4_3:-40663296 Msa0641020:CDS
TCTCAGAATTTACATTTAGG+AGG 0.475857 4_3:-40658304 Msa0641020:CDS
TTATAAGACTCAAGTTGAGT+TGG 0.479257 4_3:-40658026 Msa0641020:three_prime_UTR
GGTAGCCGTGGAGGCGAGGA+AGG 0.483983 4_3:-40663391 Msa0641020:CDS
TGGAATTCCCGCACAGGGAG+CGG 0.487736 4_3:+40664581 None:intergenic
GAGTTGGATTAAGTTGGAAA+AGG 0.490139 4_3:-40658010 Msa0641020:three_prime_UTR
CTGAGAGAGAAATCCATGTT+GGG 0.492621 4_3:+40658321 None:intergenic
AGAACAGAAACAGCTCGTTC+AGG 0.493138 4_3:+40661181 None:intergenic
GTGCCCGCTGTTGTCGGAGT+TGG 0.494381 4_3:+40661257 None:intergenic
GAATGATTCATAGCAATGCT+TGG 0.495045 4_3:-40661222 Msa0641020:CDS
AACTGGACTTACTAGGAGTC+AGG 0.495725 4_3:-40659696 Msa0641020:intron
CAATTAGCTCCTAGGTTCCA+TGG 0.502313 4_3:-40658403 Msa0641020:CDS
TCACCAGAGGCCGACCGGTA+AGG 0.503130 4_3:+40663430 None:intergenic
TCACCAACTCCGACAACAGC+GGG 0.504024 4_3:-40661260 Msa0641020:CDS
AAGTACATTTCTTCAACCAT+TGG 0.504400 4_3:+40658886 None:intergenic
AATGAATACCCTTTATTGAG+TGG 0.507581 4_3:-40658499 Msa0641020:CDS
TGAGATTGTCTTCAAGGCTA+GGG 0.509850 4_3:+40661402 None:intergenic
ATTTGGTAAGTACGTAGATG+TGG 0.512415 4_3:-40657859 Msa0641020:three_prime_UTR
GAAGTTGTGAATGTGGATAA+GGG 0.514101 4_3:-40663295 Msa0641020:CDS
TGGTTTCCACAAGCGAACTC+TGG 0.515046 4_3:+40658906 None:intergenic
TAGTTTCCTTTCAATGGACA+TGG 0.518524 4_3:-40658584 Msa0641020:CDS
TTCCACACGCAAAATTCACT+TGG 0.521622 4_3:-40664697 Msa0641020:five_prime_UTR
GACGAAATCATGTTGCCACC+AGG 0.522786 4_3:+40658086 None:intergenic
CCACAGAGTTTGAAGTTGAA+AGG 0.523168 4_3:-40658537 Msa0641020:CDS
TCAATTCCATGTCCATTGAA+AGG 0.523266 4_3:+40658578 None:intergenic
TCTTTCTTCCGCTCCCTGTG+CGG 0.524277 4_3:-40664589 Msa0641020:five_prime_UTR
CTCAGAATTTACATTTAGGA+GGG 0.524512 4_3:-40658303 Msa0641020:CDS
TGCTAGCTCTATTATGATTG+GGG 0.525049 4_3:+40664649 None:intergenic
TTCAATGTCAACATCACCAA+TGG 0.525243 4_3:-40658698 Msa0641020:CDS
CCTCTCTCTTCAACCCAACA+TGG 0.526082 4_3:-40658334 Msa0641020:CDS
TGTAGGAGTGTCGGTAGTGT+TGG 0.526282 4_3:+40663705 None:intergenic
GAAACCAGAATTGGATTGAA+AGG 0.527024 4_3:+40658660 None:intergenic
GGAAAATTAACCAGGTATGT+AGG 0.528627 4_3:-40657964 Msa0641020:three_prime_UTR
GGTGAGATTGAGGTATCTCC+GGG 0.529905 4_3:-40663412 Msa0641020:CDS
TTATTGTTAGTGGTAGCGTT+GGG 0.532546 4_3:+40663835 None:intergenic
TTTGGTAAGTACGTAGATGT+GGG 0.532696 4_3:-40657858 Msa0641020:three_prime_UTR
TCCGGGTAGCCGTGGAGGCG+AGG 0.533224 4_3:-40663395 Msa0641020:CDS
TTTGGGTGAAGATGATTGCT+TGG 0.533846 4_3:-40661320 Msa0641020:CDS
GACCCTCCTTCTCCTCCCAT+TGG 0.534808 4_3:+40658682 None:intergenic
AGTGTTGGATCCATGAAAGT+TGG 0.535269 4_3:+40663720 None:intergenic
AGATATGAAAGTGATGTGTA+TGG 0.535817 4_3:-40657785 Msa0641020:three_prime_UTR
TCTGAGAGAGAAATCCATGT+TGG 0.535848 4_3:+40658320 None:intergenic
GAAACTTCATATGGTTGTGT+AGG 0.538056 4_3:+40663688 None:intergenic
TAAACGCCAGAGTTCGCTTG+TGG 0.538237 4_3:-40658912 Msa0641020:CDS
AATGGTTGAAGAAATGTACT+TGG 0.541831 4_3:-40658884 Msa0641020:CDS
TGAAAGGAAACTACCTTGAT+GGG 0.542083 4_3:+40658594 None:intergenic
GTCGGCCTCTGGTGAGATTG+AGG 0.544425 4_3:-40663422 Msa0641020:CDS
TTATCCCAAGGACTCCGATA+AGG 0.544643 4_3:-40659735 Msa0641020:CDS
CATCAGATGATCCTGCAAGA+TGG 0.545078 4_3:+40658638 None:intergenic
CGTGGAGGCGAGGAAGGTGG+TGG 0.547728 4_3:-40663385 Msa0641020:CDS
TGAAATTAATTAGTAGACAA+AGG 0.548301 4_3:+40664546 None:intergenic
ATAACCTTATCGGAGTCCTT+GGG 0.549058 4_3:+40659731 None:intergenic
ATGAGAAGGAGTAGTGTTGA+TGG 0.552006 4_3:+40658240 None:intergenic
TTCAACTTCAAACTCTGTGG+TGG 0.552624 4_3:+40658540 None:intergenic
CAATCTCACCAGAGGCCGAC+CGG 0.552708 4_3:+40663425 None:intergenic
TCCTCGCCTCCACGGCTACC+CGG 0.553350 4_3:+40663394 None:intergenic
ATTATTGTTAGTGGTAGCGT+TGG 0.555283 4_3:+40663834 None:intergenic
ACATCACCAATGGGAGGAGA+AGG 0.558319 4_3:-40658688 Msa0641020:CDS
TTAGAGAAACACCATTTCCA+TGG 0.559032 4_3:+40658386 None:intergenic
TCAATGTCAACATCACCAAT+GGG 0.559905 4_3:-40658697 Msa0641020:CDS
GTAAACCTTCTACCGACGGT+TGG 0.560766 4_3:+40663941 None:intergenic
TATGAAAACCAATTTGCTGC+GGG 0.560781 4_3:+40663503 None:intergenic
TAATTTGTTCCTGAATGAGA+AGG 0.560909 4_3:+40658226 None:intergenic
CTCGTCCCCACTATAACATG+TGG 0.566142 4_3:-40663627 Msa0641020:CDS
AGCCGTGGAGGCGAGGAAGG+TGG 0.567527 4_3:-40663388 Msa0641020:CDS
GGAAGAAACCAAGGAGCAAG+AGG 0.569522 4_3:-40658863 Msa0641020:CDS
TCACCAATGGGAGGAGAAGG+AGG 0.571505 4_3:-40658685 Msa0641020:CDS
GAACAATGTAGGTAGAGCTA+AGG 0.571744 4_3:-40661510 Msa0641020:intron
AATACAAATTACATTCATGC+AGG 0.573041 4_3:+40657879 None:intergenic
ACGAGGAGTCACGGTAGCCG+AGG 0.573764 4_3:+40663645 None:intergenic
TGATCCCCACATGTTATAGT+GGG 0.573944 4_3:+40663621 None:intergenic
TGGTTATGGATCATTCTCAA+TGG 0.575128 4_3:-40658455 Msa0641020:CDS
AGTTCGCTTGTGGAAACCAA+TGG 0.575659 4_3:-40658902 Msa0641020:CDS
ATGCATGCAGCAGTAGGGTA+TGG 0.576937 4_3:+40657733 None:intergenic
GACAAAGGCAGCTACAAGGA+TGG 0.577961 4_3:+40664561 None:intergenic
GTAATAACAACAAAGAGAAG+AGG 0.583452 4_3:-40663237 Msa0641020:CDS
CAAGGATGGAATTCCCGCAC+AGG 0.585127 4_3:+40664575 None:intergenic
AATATTGAATCTAGTTCAAG+TGG 0.585962 4_3:-40663208 Msa0641020:CDS
TGATTCATAGCAATGCTTGG+AGG 0.588232 4_3:-40661219 Msa0641020:CDS
TGGTGTTGATTGAGTGATGA+AGG 0.588479 4_3:+40663769 None:intergenic
GTGGATAAGGGAATCATCAA+AGG 0.589254 4_3:-40663283 Msa0641020:CDS
CACCACCTTCCTCGCCTCCA+CGG 0.590288 4_3:+40663386 None:intergenic
TCATTCAACTCCTACATACC+TGG 0.591092 4_3:+40657954 None:intergenic
CACATGTTATAGTGGGGACG+AGG 0.591269 4_3:+40663628 None:intergenic
TTTGCATGCATGCAGCAGTA+GGG 0.591778 4_3:+40657728 None:intergenic
AGTAGACAAAGGCAGCTACA+AGG 0.593196 4_3:+40664557 None:intergenic
TTGGTAAGTACGTAGATGTG+GGG 0.594080 4_3:-40657857 Msa0641020:three_prime_UTR
AGAGGAGAATAATGACTCCA+AGG 0.594942 4_3:-40658845 Msa0641020:CDS
CTTAAATCCATGAAGCGCGT+GGG 0.595475 4_3:+40663804 None:intergenic
AATCATCAAAGGAGAATCTG+TGG 0.597233 4_3:-40663272 Msa0641020:CDS
CGAGGAGGAAAATGGATGGA+AGG 0.598355 4_3:+40663663 None:intergenic
TCACACTTTGCATTTGATGG+TGG 0.598415 4_3:+40661476 None:intergenic
TGGAAGGTGGAAACTTCATA+TGG 0.602748 4_3:+40663679 None:intergenic
ATATGGTTGTGTAGGAGTGT+CGG 0.603447 4_3:+40663696 None:intergenic
GAGGTATCTCCGGGTAGCCG+TGG 0.603840 4_3:-40663403 Msa0641020:CDS
ACACCATTTCCATGGAACCT+AGG 0.604931 4_3:+40658394 None:intergenic
CAGGATCATCTGATGTGCAA+AGG 0.605084 4_3:-40658630 Msa0641020:CDS
GGTGGAGTTTCGACCATGAA+CGG 0.607341 4_3:-40663367 Msa0641020:CDS
GTCTGTAAACCTTCTACCGA+CGG 0.607577 4_3:+40663937 None:intergenic
ATCAAAGGAGAATCTGTGGA+AGG 0.608300 4_3:-40663268 Msa0641020:CDS
CCATGTTGGGTTGAAGAGAG+AGG 0.608631 4_3:+40658334 None:intergenic
ACTTAAATCCATGAAGCGCG+TGG 0.609090 4_3:+40663803 None:intergenic
TCGTCCCCACTATAACATGT+GGG 0.609880 4_3:-40663626 Msa0641020:CDS
GATTTCGTCAAACTCAGCGT+TGG 0.617385 4_3:-40658072 Msa0641020:three_prime_UTR
ATGGTATTGGAAAATTAACC+AGG 0.618579 4_3:-40657972 Msa0641020:three_prime_UTR
GGTGGAAGAGAAAACAATGG+AGG 0.618595 4_3:-40663187 Msa0641020:CDS
CTATGAAAACCAATTTGCTG+CGG 0.619359 4_3:+40663502 None:intergenic
TCTTGATGAAGTTGTGAATG+TGG 0.620303 4_3:-40663302 Msa0641020:CDS
ATTGAATCTAGTTCAAGTGG+TGG 0.621430 4_3:-40663205 Msa0641020:CDS
TAGCTCTATTATGATTGGGG+TGG 0.621491 4_3:+40664652 None:intergenic
GGAGGAAAATGGATGGAAGG+TGG 0.623156 4_3:+40663666 None:intergenic
AATGAAAATCATCATGGTGG+TGG 0.625687 4_3:-40658475 Msa0641020:CDS
AATGTACTTGGAAGAAACCA+AGG 0.627170 4_3:-40658872 Msa0641020:CDS
AGTGGAAATGAAAATCATCA+TGG 0.627811 4_3:-40658481 Msa0641020:CDS
AGGAGTCACGGTAGCCGAGG+AGG 0.628325 4_3:+40663648 None:intergenic
GATCCATGAAAGTTGGAAGG+TGG 0.629051 4_3:+40663727 None:intergenic
CGTTCAGGCAAGCCTCTCTG+AGG 0.630018 4_3:+40661196 None:intergenic
GATATGAAAGTGATGTGTAT+GGG 0.630522 4_3:-40657784 Msa0641020:three_prime_UTR
TAGCCGAGGAGGAAAATGGA+TGG 0.630526 4_3:+40663659 None:intergenic
GCTTGTTAGCATGCTAGATG+AGG 0.632117 4_3:-40663104 Msa0641020:intron
GTATCTCCGGGTAGCCGTGG+AGG 0.632306 4_3:-40663400 Msa0641020:CDS
GTGGAAGAGAAAACAATGGA+GGG 0.633833 4_3:-40663186 Msa0641020:CDS
ATAGTGGGGACGAGGAGTCA+CGG 0.640127 4_3:+40663636 None:intergenic
CATAGACCAGTTTATCAGCG+TGG 0.640750 4_3:-40663484 Msa0641020:CDS
TTAAATCCATGAAGCGCGTG+GGG 0.642133 4_3:+40663805 None:intergenic
AAGGATGGAATTCCCGCACA+GGG 0.642578 4_3:+40664576 None:intergenic
CACCAATGGGAGGAGAAGGA+GGG 0.642966 4_3:-40658684 Msa0641020:CDS
CCTTTCAACTTCAAACTCTG+TGG 0.643049 4_3:+40658537 None:intergenic
GAATAGTAACTCCAAGCAAG+TGG 0.643953 4_3:+40663749 None:intergenic
TGTGACATGCAGTTATCCCA+AGG 0.644183 4_3:-40659747 Msa0641020:intron
AAAGGAGAATCTGTGGAAGG+AGG 0.648166 4_3:-40663265 Msa0641020:CDS
TGGTAAGTACGTAGATGTGG+GGG 0.660319 4_3:-40657856 Msa0641020:three_prime_UTR
CGTCCCCACTATAACATGTG+GGG 0.666378 4_3:-40663625 Msa0641020:CDS
AAGTTTCAACAAAATCCTGG+TGG 0.668888 4_3:-40658101 Msa0641020:three_prime_UTR
GCAGCAAACGCCTTACCGGT+CGG 0.670260 4_3:-40663440 Msa0641020:CDS
GATTGAGTGATGAAGGCGCG+TGG 0.674684 4_3:+40663776 None:intergenic
CAGTTCTGAAATCCAACCGT+CGG 0.674796 4_3:-40663953 Msa0641020:CDS
ATCACCAACTCCGACAACAG+CGG 0.680001 4_3:-40661261 Msa0641020:CDS
TTGGATCCATGAAAGTTGGA+AGG 0.681916 4_3:+40663724 None:intergenic
ATTGAGTGATGAAGGCGCGT+GGG 0.683811 4_3:+40663777 None:intergenic
AGATACCTCAATCTCACCAG+AGG 0.686383 4_3:+40663417 None:intergenic
ATGTCAACATCACCAATGGG+AGG 0.690189 4_3:-40658694 Msa0641020:CDS
ATGAAAACAAAATCACATGG+TGG 0.692742 4_3:-40664169 Msa0641020:exon
AAAATGAAAACAAAATCACA+TGG 0.701682 4_3:-40664172 Msa0641020:exon
AGTGGTGGAAGAGAAAACAA+TGG 0.709372 4_3:-40663190 Msa0641020:CDS
GATCCCCACATGTTATAGTG+GGG 0.711349 4_3:+40663622 None:intergenic
AAACTACGTACCTTACTCTG+AGG 0.712519 4_3:-40663896 Msa0641020:CDS
AATGCTTGGAGGCCTCAGAG+AGG 0.737120 4_3:-40661208 Msa0641020:CDS
GGAAATGAAAATCATCATGG+TGG 0.766816 4_3:-40658478 Msa0641020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGAATAAATTTTTTCTATT+TGG + chr4_3:40661565-40661584 None:intergenic 10.0%
!!! TGTCAATTAATTTTTATTTA+GGG + chr4_3:40662266-40662285 None:intergenic 10.0%
!!! TTAATTGAATATATAGTTTT+AGG - chr4_3:40662459-40662478 Msa0641020:intron 10.0%
!!! ATTTTTATAAAAGTATTTTG+TGG + chr4_3:40663162-40663181 None:intergenic 10.0%
!! TACCCATAAATAAATTTAAT+TGG - chr4_3:40660322-40660341 Msa0641020:intron 15.0%
!! AGCCAATTAAATTTATTTAT+GGG + chr4_3:40660327-40660346 None:intergenic 15.0%
!! TAGCCAATTAAATTTATTTA+TGG + chr4_3:40660328-40660347 None:intergenic 15.0%
!!! TATTTTCAAGAAATAGTTAT+TGG - chr4_3:40660488-40660507 Msa0641020:intron 15.0%
!!! ATTTTCAAAAATGCAATTAA+TGG + chr4_3:40661359-40661378 None:intergenic 15.0%
!! TAGAAAAAATTTATTCATCA+AGG - chr4_3:40661567-40661586 Msa0641020:intron 15.0%
!! ATTTGTAAACAATTCAAATA+TGG - chr4_3:40661807-40661826 Msa0641020:intron 15.0%
!! TTTGTAAACAATTCAAATAT+GGG - chr4_3:40661808-40661827 Msa0641020:intron 15.0%
!! AGAACTATTAAAATTAAGTA+AGG + chr4_3:40661877-40661896 None:intergenic 15.0%
!! TTAAATAAATTAACACAATC+TGG + chr4_3:40662022-40662041 None:intergenic 15.0%
!! AGTTTAGTCATTAATTTAAT+AGG + chr4_3:40662199-40662218 None:intergenic 15.0%
!!! GTCAATTAATTTTTATTTAG+GGG + chr4_3:40662265-40662284 None:intergenic 15.0%
!!! GTGTCAATTAATTTTTATTT+AGG + chr4_3:40662267-40662286 None:intergenic 15.0%
!!! ATCATGTAGTATTATAATTT+TGG - chr4_3:40662510-40662529 Msa0641020:intron 15.0%
!! TTTCTATATCAAAATTTGTA+AGG + chr4_3:40662634-40662653 None:intergenic 15.0%
!! TATTAACAATCAGATTAAAT+CGG + chr4_3:40662836-40662855 None:intergenic 15.0%
!! TATAAAGATGTACAAAAATT+TGG - chr4_3:40664617-40664636 Msa0641020:five_prime_UTR 15.0%
!! TGAAATTAATTAGTAGACAA+AGG + chr4_3:40657894-40657913 None:intergenic 20.0%
!!! TTGTTTTCATTTTCATTACT+TGG + chr4_3:40658258-40658277 None:intergenic 20.0%
!! AAAATGAAAACAAAATCACA+TGG - chr4_3:40658265-40658284 Msa0641020:CDS 20.0%
!!! AAAAAAGAAAACCTTCTTTT+TGG + chr4_3:40658347-40658366 None:intergenic 20.0%
!! AAATTCTTTAACGTGTAATT+TGG + chr4_3:40658384-40658403 None:intergenic 20.0%
!!! AATTAACTTTCCACAAATTT+TGG - chr4_3:40659378-40659397 Msa0641020:intron 20.0%
!!! ATTAACTTTCCACAAATTTT+GGG - chr4_3:40659379-40659398 Msa0641020:intron 20.0%
!! AAAATATTTGTGTGAAAGTA+CGG - chr4_3:40659453-40659472 Msa0641020:intron 20.0%
!!! GTCTTTAAAAACAAAAATTG+AGG - chr4_3:40659609-40659628 Msa0641020:intron 20.0%
!! TTTGTTGAAAATATATGTTG+AGG - chr4_3:40659741-40659760 Msa0641020:intron 20.0%
!! TATGGTAACATATTAACATA+AGG - chr4_3:40660200-40660219 Msa0641020:intron 20.0%
!! ATGGTAACATATTAACATAA+GGG - chr4_3:40660201-40660220 Msa0641020:intron 20.0%
!! TATTCATGCAAATCTAAATT+AGG + chr4_3:40660530-40660549 None:intergenic 20.0%
!! GAGTAATATTAAATACTTAC+GGG + chr4_3:40661312-40661331 None:intergenic 20.0%
!! GGAGTAATATTAAATACTTA+CGG + chr4_3:40661313-40661332 None:intergenic 20.0%
!! TTAATATTACTCCATTCTAT+AGG - chr4_3:40661320-40661339 Msa0641020:CDS 20.0%
!! AATAAAAATGAAACCTAAAG+AGG + chr4_3:40661398-40661417 None:intergenic 20.0%
!!! CTTTAGGTTTCATTTTTATT+TGG - chr4_3:40661398-40661417 Msa0641020:CDS 20.0%
!!! TTAAAAGTACAGAAATAGAT+TGG + chr4_3:40662773-40662792 None:intergenic 20.0%
!!! AATCTATTTCTGTACTTTTA+AGG - chr4_3:40662772-40662791 Msa0641020:intron 20.0%
!! CATCTTTGTATTATTGTAAT+GGG + chr4_3:40662921-40662940 None:intergenic 20.0%
!! TTTGACAACAATAATTCTAA+AGG - chr4_3:40663360-40663379 Msa0641020:CDS 20.0%
!! ACAAATAGATCAAAAGAATT+AGG - chr4_3:40663620-40663639 Msa0641020:CDS 20.0%
!!! ATTAATTTGATCAAGTTTTG+TGG + chr4_3:40663648-40663667 None:intergenic 20.0%
!! CAAAATCACATATAATTTCT+AGG + chr4_3:40664299-40664318 None:intergenic 20.0%
!! AAGGTATACATACTTTAATA+TGG - chr4_3:40664446-40664465 Msa0641020:intron 20.0%
!! TACATACTTTAATATGGTAT+TGG - chr4_3:40664452-40664471 Msa0641020:intron 20.0%
!! AGAAAGATTAATGGAACTTT+TGG + chr4_3:40657835-40657854 None:intergenic 25.0%
! GAAAAAAGTGAAAAAGAAAC+TGG - chr4_3:40657931-40657950 Msa0641020:three_prime_UTR 25.0%
! GGTTAATAATTGTTTCAAAC+AGG + chr4_3:40658069-40658088 None:intergenic 25.0%
!!! TTTATTTTCCCTTGATTTTC+AGG - chr4_3:40658218-40658237 Msa0641020:CDS 25.0%
! ACACAAATAAACCAAAAAGA+AGG - chr4_3:40658333-40658352 Msa0641020:CDS 25.0%
! AGAATTAATTCTGACAGATA+TGG - chr4_3:40658424-40658443 Msa0641020:CDS 25.0%
!! AATATTGAATCTAGTTCAAG+TGG - chr4_3:40659229-40659248 Msa0641020:intron 25.0%
! CGGTACATATTTATTAATTG+TGG - chr4_3:40659473-40659492 Msa0641020:intron 25.0%
! TGAAAATATATGTTGAGGAA+AGG - chr4_3:40659746-40659765 Msa0641020:intron 25.0%
! GAAAATATATGTTGAGGAAA+GGG - chr4_3:40659747-40659766 Msa0641020:intron 25.0%
! AATGTCAGAGAGAATAATTT+GGG - chr4_3:40659805-40659824 Msa0641020:intron 25.0%
! ACTCACATAAGAAAGAAATT+TGG + chr4_3:40659988-40660007 None:intergenic 25.0%
! TAAGCACATATGACATATTA+AGG - chr4_3:40660045-40660064 Msa0641020:intron 25.0%
! AAGCACATATGACATATTAA+GGG - chr4_3:40660046-40660065 Msa0641020:intron 25.0%
! ATATGACATATTAAGGGAAA+TGG - chr4_3:40660052-40660071 Msa0641020:intron 25.0%
! AGTAATAGTTTCATTGTAGA+AGG - chr4_3:40660655-40660674 Msa0641020:intron 25.0%
!!! AGGTTTCATTTTTATTTGGA+TGG - chr4_3:40661402-40661421 Msa0641020:CDS 25.0%
! AAGAAGAGAATTAGAGAAAA+AGG + chr4_3:40661438-40661457 None:intergenic 25.0%
! CTAGTATAAATTAGAGTCTA+GGG + chr4_3:40661484-40661503 None:intergenic 25.0%
! TCTAGTATAAATTAGAGTCT+AGG + chr4_3:40661485-40661504 None:intergenic 25.0%
!!! TAGTTTTCATTGTTTCTTGT+GGG + chr4_3:40661656-40661675 None:intergenic 25.0%
!!! ATAGTTTTCATTGTTTCTTG+TGG + chr4_3:40661657-40661676 None:intergenic 25.0%
! ATGATTCACACTATCATTTA+TGG + chr4_3:40661697-40661716 None:intergenic 25.0%
!! TTCAAATATGGGTATGTTTT+TGG - chr4_3:40661819-40661838 Msa0641020:intron 25.0%
!!! TTTTTGGTCCCTATAAAATT+GGG - chr4_3:40661835-40661854 Msa0641020:intron 25.0%
!! TAAAAGGTCCCAATTTTATA+GGG + chr4_3:40661846-40661865 None:intergenic 25.0%
!! TTAAAAGGTCCCAATTTTAT+AGG + chr4_3:40661847-40661866 None:intergenic 25.0%
! AAGTAAGGACTAAACTTAAA+AGG + chr4_3:40661862-40661881 None:intergenic 25.0%
!! ATACATGAGTTGACAATAAA+AGG - chr4_3:40662295-40662314 Msa0641020:intron 25.0%
! AATGTCAGTCATGAAAAAAA+TGG + chr4_3:40662411-40662430 None:intergenic 25.0%
! CAATTAAATTAGCCATCATT+TGG + chr4_3:40662446-40662465 None:intergenic 25.0%
! TTATTAACTTACGTTGTACA+AGG - chr4_3:40662885-40662904 Msa0641020:intron 25.0%
! TATTAACTTACGTTGTACAA+GGG - chr4_3:40662886-40662905 Msa0641020:intron 25.0%
! CCATCTTTGTATTATTGTAA+TGG + chr4_3:40662922-40662941 None:intergenic 25.0%
! CCATTACAATAATACAAAGA+TGG - chr4_3:40662919-40662938 Msa0641020:intron 25.0%
! TACAATAATACAAAGATGGT+AGG - chr4_3:40662923-40662942 Msa0641020:intron 25.0%
! ACAATAATACAAAGATGGTA+GGG - chr4_3:40662924-40662943 Msa0641020:intron 25.0%
!!! AGAATTTTGTTTCAATCGAA+AGG - chr4_3:40663018-40663037 Msa0641020:intron 25.0%
!!! GAATTTTGTTTCAATCGAAA+GGG - chr4_3:40663019-40663038 Msa0641020:intron 25.0%
! ACATATCAATTCTACAAAAG+TGG + chr4_3:40663100-40663119 None:intergenic 25.0%
!! CAAAATCACAGGATTTTAAA+GGG + chr4_3:40663215-40663234 None:intergenic 25.0%
!! ACAAAATCACAGGATTTTAA+AGG + chr4_3:40663216-40663235 None:intergenic 25.0%
!! TAAAATCCTGTGATTTTGTA+TGG - chr4_3:40663217-40663236 Msa0641020:CDS 25.0%
!! AAAATCCTGTGATTTTGTAT+GGG - chr4_3:40663218-40663237 Msa0641020:CDS 25.0%
!! TACTAAGATTTTGCCTATTT+TGG - chr4_3:40663262-40663281 Msa0641020:CDS 25.0%
!! ACTAAGATTTTGCCTATTTT+GGG - chr4_3:40663263-40663282 Msa0641020:CDS 25.0%
!!! TCTCTTTAAGTTTTTAATGC+AGG - chr4_3:40663487-40663506 Msa0641020:CDS 25.0%
! TGATGTTGACATTGAATTAT+TGG + chr4_3:40663735-40663754 None:intergenic 25.0%
! TTTCATTTCCACTCAATAAA+GGG + chr4_3:40663949-40663968 None:intergenic 25.0%
!! TTTTCATTTCCACTCAATAA+AGG + chr4_3:40663950-40663969 None:intergenic 25.0%
!! AGAGGAATATTTTCATTATG+AGG + chr4_3:40664088-40664107 None:intergenic 25.0%
! TTGATATTGAAAACAGAAAG+AGG - chr4_3:40664242-40664261 Msa0641020:intron 25.0%
! ATTATTAATAAGCGTCTGTT+TGG + chr4_3:40664392-40664411 None:intergenic 25.0%
! AATACAAATTACATTCATGC+AGG + chr4_3:40664561-40664580 None:intergenic 25.0%
!! GCATGAATGTAATTTGTATT+TGG - chr4_3:40664561-40664580 Msa0641020:five_prime_UTR 25.0%
!! TTGCTAGCTCTATTATGATT+GGG + chr4_3:40657792-40657811 None:intergenic 30.0%
!! ATTGCTAGCTCTATTATGAT+TGG + chr4_3:40657793-40657812 None:intergenic 30.0%
! AGATTAATGGAACTTTTGGA+GGG + chr4_3:40657831-40657850 None:intergenic 30.0%
! AAGATTAATGGAACTTTTGG+AGG + chr4_3:40657832-40657851 None:intergenic 30.0%
ACATAATCATCTGATTCTCA+GGG + chr4_3:40658134-40658153 None:intergenic 30.0%
AACATAATCATCTGATTCTC+AGG + chr4_3:40658135-40658154 None:intergenic 30.0%
ATGTTGATCCTGAAAATCAA+GGG + chr4_3:40658229-40658248 None:intergenic 30.0%
ATGAAAACAAAATCACATGG+TGG - chr4_3:40658268-40658287 Msa0641020:CDS 30.0%
!! AAGCTTGTTAATTTGAAGCT+TGG + chr4_3:40658303-40658322 None:intergenic 30.0%
TTAACGTGTAATTTGGATTG+TGG + chr4_3:40658377-40658396 None:intergenic 30.0%
! CACGTTAAAGAATTTTCGTA+CGG - chr4_3:40658389-40658408 Msa0641020:CDS 30.0%
! ATGTTTTGTGTTGGATTTTG+TGG + chr4_3:40658569-40658588 None:intergenic 30.0%
GTAATAACAACAAAGAGAAG+AGG - chr4_3:40659200-40659219 Msa0641020:intron 30.0%
TATTGAAAGCCCAAAATTTG+TGG + chr4_3:40659391-40659410 None:intergenic 30.0%
GAATGTCAGAGAGAATAATT+TGG - chr4_3:40659804-40659823 Msa0641020:intron 30.0%
! AACATGAAACTGACTCAATT+GGG + chr4_3:40659836-40659855 None:intergenic 30.0%
! AAACATGAAACTGACTCAAT+TGG + chr4_3:40659837-40659856 None:intergenic 30.0%
TCTCACTCTCAATCAATAAT+GGG + chr4_3:40659889-40659908 None:intergenic 30.0%
TTCTCACTCTCAATCAATAA+TGG + chr4_3:40659890-40659909 None:intergenic 30.0%
ATTCATAAACACACTCATGA+TGG - chr4_3:40659960-40659979 Msa0641020:intron 30.0%
TTCATAAACACACTCATGAT+GGG - chr4_3:40659961-40659980 Msa0641020:intron 30.0%
AGATCTAACAATCTTCAAAG+TGG + chr4_3:40660105-40660124 None:intergenic 30.0%
!! TTATTTTACCATGGATTTGC+CGG - chr4_3:40660169-40660188 Msa0641020:intron 30.0%
! ATTTTCGTGATTCATTCTTG+AGG - chr4_3:40660353-40660372 Msa0641020:intron 30.0%
TAGCAGTCATCTTAACATAA+TGG - chr4_3:40660392-40660411 Msa0641020:intron 30.0%
AAAATAACAACGTTGATCTG+AGG + chr4_3:40660431-40660450 None:intergenic 30.0%
! AATTTTGTCAAACTCACTAC+AGG - chr4_3:40660830-40660849 Msa0641020:intron 30.0%
!!! ACTCTTGTTTTGAACAATGT+AGG - chr4_3:40660916-40660935 Msa0641020:intron 30.0%
ATATCACACTTTGCATTTGA+TGG + chr4_3:40660967-40660986 None:intergenic 30.0%
ATAACTCTAGACCTATAGAA+TGG + chr4_3:40661334-40661353 None:intergenic 30.0%
GAGAATTAGAGAAAAAGGTA+AGG + chr4_3:40661433-40661452 None:intergenic 30.0%
TATGAATCAAAAGCTTGTCT+TGG + chr4_3:40661767-40661786 None:intergenic 30.0%
!!! GTTTTTGGTCCCTATAAAAT+TGG - chr4_3:40661834-40661853 Msa0641020:intron 30.0%
! ATTTTGCGACAATTTTTGCA+AGG + chr4_3:40661987-40662006 None:intergenic 30.0%
GTTAATTAAGTGCCAAATGA+TGG - chr4_3:40662431-40662450 Msa0641020:intron 30.0%
CAACGTAAGTTAATAACAAG+AGG + chr4_3:40662881-40662900 None:intergenic 30.0%
ATTAACTTACGTTGTACAAG+GGG - chr4_3:40662887-40662906 Msa0641020:intron 30.0%
CAATAATACAAAGATGGTAG+GGG - chr4_3:40662925-40662944 Msa0641020:intron 30.0%
AATAATACAAAGATGGTAGG+GGG - chr4_3:40662926-40662945 Msa0641020:intron 30.0%
AAAATCGCAATCAAAATCGA+AGG - chr4_3:40663063-40663082 Msa0641020:intron 30.0%
!! AGGATTTTAAAGGGTTTTGA+AGG + chr4_3:40663206-40663225 None:intergenic 30.0%
TAAAACCCATACAAAATCAC+AGG + chr4_3:40663226-40663245 None:intergenic 30.0%
TGAATAAAGTCTCAAAATCC+TGG - chr4_3:40663315-40663334 Msa0641020:CDS 30.0%
! TCTCAAAATCCTGGATTTTA+GGG - chr4_3:40663324-40663343 Msa0641020:CDS 30.0%
! CTGATTTTGTATTCTCAAAC+TGG + chr4_3:40663395-40663414 None:intergenic 30.0%
! TTTTAATGCAGGTATCTAAC+TGG - chr4_3:40663498-40663517 Msa0641020:CDS 30.0%
AAGTACATTTCTTCAACCAT+TGG + chr4_3:40663554-40663573 None:intergenic 30.0%
AATGGTTGAAGAAATGTACT+TGG - chr4_3:40663553-40663572 Msa0641020:CDS 30.0%
TGATCTATTTGTGTTATCCT+TGG + chr4_3:40663612-40663631 None:intergenic 30.0%
AATGAATACCCTTTATTGAG+TGG - chr4_3:40663938-40663957 Msa0641020:CDS 30.0%
AGTGGAAATGAAAATCATCA+TGG - chr4_3:40663956-40663975 Msa0641020:CDS 30.0%
CTCTCTCAGAATTTACATTT+AGG - chr4_3:40664130-40664149 Msa0641020:CDS 30.0%
TCTCAGAATTTACATTTAGG+AGG - chr4_3:40664133-40664152 Msa0641020:CDS 30.0%
CTCAGAATTTACATTTAGGA+GGG - chr4_3:40664134-40664153 Msa0641020:CDS 30.0%
!! TAATTTGTTCCTGAATGAGA+AGG + chr4_3:40664214-40664233 None:intergenic 30.0%
TTGAAGTTTCAACAAAATCC+TGG - chr4_3:40664333-40664352 Msa0641020:intron 30.0%
!! TTATAAGACTCAAGTTGAGT+TGG - chr4_3:40664411-40664430 Msa0641020:intron 30.0%
! ATGGTATTGGAAAATTAACC+AGG - chr4_3:40664465-40664484 Msa0641020:intron 30.0%
AGATATGAAAGTGATGTGTA+TGG - chr4_3:40664652-40664671 Msa0641020:five_prime_UTR 30.0%
GATATGAAAGTGATGTGTAT+GGG - chr4_3:40664653-40664672 Msa0641020:five_prime_UTR 30.0%
!! TGCTAGCTCTATTATGATTG+GGG + chr4_3:40657791-40657810 None:intergenic 35.0%
GATTTCAAGCAAGTAAAGTC+TGG + chr4_3:40658090-40658109 None:intergenic 35.0%
GATGTTGATCCTGAAAATCA+AGG + chr4_3:40658230-40658249 None:intergenic 35.0%
GTACGTAGTTTGGATTCATA+AGG + chr4_3:40658532-40658551 None:intergenic 35.0%
! TTATTGTTAGTGGTAGCGTT+GGG + chr4_3:40658605-40658624 None:intergenic 35.0%
! ATTATTGTTAGTGGTAGCGT+TGG + chr4_3:40658606-40658625 None:intergenic 35.0%
AACGCTACCACTAACAATAA+TGG - chr4_3:40658605-40658624 Msa0641020:CDS 35.0%
GAAACTTCATATGGTTGTGT+AGG + chr4_3:40658752-40658771 None:intergenic 35.0%
!! TATGAAAACCAATTTGCTGC+GGG + chr4_3:40658937-40658956 None:intergenic 35.0%
!! CTATGAAAACCAATTTGCTG+CGG + chr4_3:40658938-40658957 None:intergenic 35.0%
!!! ACCATGAACGGTGTTATTTT+TGG - chr4_3:40659082-40659101 Msa0641020:intron 35.0%
TCTTGATGAAGTTGTGAATG+TGG - chr4_3:40659135-40659154 Msa0641020:intron 35.0%
TGAAGTTGTGAATGTGGATA+AGG - chr4_3:40659141-40659160 Msa0641020:intron 35.0%
GAAGTTGTGAATGTGGATAA+GGG - chr4_3:40659142-40659161 Msa0641020:intron 35.0%
AATCATCAAAGGAGAATCTG+TGG - chr4_3:40659165-40659184 Msa0641020:intron 35.0%
! ATTGAATCTAGTTCAAGTGG+TGG - chr4_3:40659232-40659251 Msa0641020:intron 35.0%
TAAAGATTGAGACAAGCCAA+AGG - chr4_3:40659674-40659693 Msa0641020:intron 35.0%
TCAGAGAGAATAATTTGGGT+CGG - chr4_3:40659809-40659828 Msa0641020:intron 35.0%
!! CAATCAATAATGGGTTCACT+TGG + chr4_3:40659880-40659899 None:intergenic 35.0%
GAGAGTGAGAAGAAAAGTAA+AGG - chr4_3:40659899-40659918 Msa0641020:intron 35.0%
TCCATGGTAAAATAAGTGCA+GGG + chr4_3:40660164-40660183 None:intergenic 35.0%
ATCCATGGTAAAATAAGTGC+AGG + chr4_3:40660165-40660184 None:intergenic 35.0%
ATGATATGTATAGCGAGGAA+TGG - chr4_3:40660226-40660245 Msa0641020:intron 35.0%
TGATATGTATAGCGAGGAAT+GGG - chr4_3:40660227-40660246 Msa0641020:intron 35.0%
ATTTCCATTCGCGATGATTT+CGG + chr4_3:40660256-40660275 None:intergenic 35.0%
CAACACTTTAAGTGCATGAT+CGG + chr4_3:40660857-40660876 None:intergenic 35.0%
!! TTGCTTTGAGATTGTCTTCA+AGG + chr4_3:40661044-40661063 None:intergenic 35.0%
GTGTTAAGTTAGAAGGTTCT+AGG - chr4_3:40661140-40661159 Msa0641020:intron 35.0%
GAATGATTCATAGCAATGCT+TGG - chr4_3:40661215-40661234 Msa0641020:CDS 35.0%
TATTTGCTCAACTCCTCTTT+AGG - chr4_3:40661382-40661401 Msa0641020:CDS 35.0%
AGGGAATACTCAAACTCATT+AGG + chr4_3:40661465-40661484 None:intergenic 35.0%
TCTTGCAAGCATAACCTTAT+CGG + chr4_3:40662719-40662738 None:intergenic 35.0%
!!! TTCTGTACTTTTAAGGCTGT+TGG - chr4_3:40662779-40662798 Msa0641020:intron 35.0%
ACTACTGAGACATTCTAACA+AGG - chr4_3:40662984-40663003 Msa0641020:intron 35.0%
CTATAGCAGAATCCCAAAAT+AGG + chr4_3:40663278-40663297 None:intergenic 35.0%
CTATAGATTTGAGTCGTTGA+AGG - chr4_3:40663292-40663311 Msa0641020:CDS 35.0%
! GTCTCAAAATCCTGGATTTT+AGG - chr4_3:40663323-40663342 Msa0641020:CDS 35.0%
!!! CTGGATTTTAGGGTTTAAGT+CGG - chr4_3:40663334-40663353 Msa0641020:CDS 35.0%
!!! TGGATTTTAGGGTTTAAGTC+GGG - chr4_3:40663335-40663354 Msa0641020:CDS 35.0%
AGAGAGTAAAACACCTCTAA+AGG + chr4_3:40663472-40663491 None:intergenic 35.0%
AATGTACTTGGAAGAAACCA+AGG - chr4_3:40663565-40663584 Msa0641020:CDS 35.0%
TTGAAATCACTGTTGGAGAA+AGG + chr4_3:40663709-40663728 None:intergenic 35.0%
TTGGAACTTGAAATCACTGT+TGG + chr4_3:40663716-40663735 None:intergenic 35.0%
TTCAATGTCAACATCACCAA+TGG - chr4_3:40663739-40663758 Msa0641020:CDS 35.0%
TCAATGTCAACATCACCAAT+GGG - chr4_3:40663740-40663759 Msa0641020:CDS 35.0%
GAAACCAGAATTGGATTGAA+AGG + chr4_3:40663780-40663799 None:intergenic 35.0%
TGAAAGGAAACTACCTTGAT+GGG + chr4_3:40663846-40663865 None:intergenic 35.0%
TTGAAAGGAAACTACCTTGA+TGG + chr4_3:40663847-40663866 None:intergenic 35.0%
TCAAGGTAGTTTCCTTTCAA+TGG - chr4_3:40663847-40663866 Msa0641020:CDS 35.0%
TAGTTTCCTTTCAATGGACA+TGG - chr4_3:40663853-40663872 Msa0641020:CDS 35.0%
TCAATTCCATGTCCATTGAA+AGG + chr4_3:40663862-40663881 None:intergenic 35.0%
GGAAATGAAAATCATCATGG+TGG - chr4_3:40663959-40663978 Msa0641020:CDS 35.0%
AATGAAAATCATCATGGTGG+TGG - chr4_3:40663962-40663981 Msa0641020:CDS 35.0%
TGGTTATGGATCATTCTCAA+TGG - chr4_3:40663982-40664001 Msa0641020:CDS 35.0%
TCTCAATGGAAGATGTTAGA+AGG - chr4_3:40663996-40664015 Msa0641020:CDS 35.0%
TTAGAGAAACACCATTTCCA+TGG + chr4_3:40664054-40664073 None:intergenic 35.0%
AATGGTGTTTCTCTAACTCT+TGG - chr4_3:40664058-40664077 Msa0641020:CDS 35.0%
AAGTTTCAACAAAATCCTGG+TGG - chr4_3:40664336-40664355 Msa0641020:intron 35.0%
!! CAAGTTGAGTTGGATTAAGT+TGG - chr4_3:40664421-40664440 Msa0641020:intron 35.0%
!! GAGTTGGATTAAGTTGGAAA+AGG - chr4_3:40664427-40664446 Msa0641020:intron 35.0%
GGAAAATTAACCAGGTATGT+AGG - chr4_3:40664473-40664492 Msa0641020:intron 35.0%
ATTTGGTAAGTACGTAGATG+TGG - chr4_3:40664578-40664597 Msa0641020:five_prime_UTR 35.0%
TTTGGTAAGTACGTAGATGT+GGG - chr4_3:40664579-40664598 Msa0641020:five_prime_UTR 35.0%
AAAGTGATGTGTATGGGATT+TGG - chr4_3:40664659-40664678 Msa0641020:five_prime_UTR 35.0%
TTCCACACGCAAAATTCACT+TGG - chr4_3:40657740-40657759 Msa0641020:three_prime_UTR 40.0%
! TAGCTCTATTATGATTGGGG+TGG + chr4_3:40657788-40657807 None:intergenic 40.0%
!! AATGGAACTTTTGGAGGGTT+TGG + chr4_3:40657826-40657845 None:intergenic 40.0%
GATATGGCAACGTACTTTCA+TGG - chr4_3:40658440-40658459 Msa0641020:CDS 40.0%
TCAGAGTAAGGTACGTAGTT+TGG + chr4_3:40658542-40658561 None:intergenic 40.0%
AAACTACGTACCTTACTCTG+AGG - chr4_3:40658541-40658560 Msa0641020:CDS 40.0%
! TTTTGTGGTTCCTCAGAGTA+AGG + chr4_3:40658554-40658573 None:intergenic 40.0%
!! GCGAAAAGCATGTTTTGTGT+TGG + chr4_3:40658578-40658597 None:intergenic 40.0%
GGGAGAACCATTATTGTTAG+TGG + chr4_3:40658615-40658634 None:intergenic 40.0%
!! TGGTGTTGATTGAGTGATGA+AGG + chr4_3:40658671-40658690 None:intergenic 40.0%
GAATAGTAACTCCAAGCAAG+TGG + chr4_3:40658691-40658710 None:intergenic 40.0%
ATTCCACCTTCCAACTTTCA+TGG - chr4_3:40658707-40658726 Msa0641020:CDS 40.0%
TTGGATCCATGAAAGTTGGA+AGG + chr4_3:40658716-40658735 None:intergenic 40.0%
! AGTGTTGGATCCATGAAAGT+TGG + chr4_3:40658720-40658739 None:intergenic 40.0%
! ATATGGTTGTGTAGGAGTGT+CGG + chr4_3:40658744-40658763 None:intergenic 40.0%
TGGAAGGTGGAAACTTCATA+TGG + chr4_3:40658761-40658780 None:intergenic 40.0%
TGATCCCCACATGTTATAGT+GGG + chr4_3:40658819-40658838 None:intergenic 40.0%
GCCAAAAATAACACCGTTCA+TGG + chr4_3:40659086-40659105 None:intergenic 40.0%
GTGGATAAGGGAATCATCAA+AGG - chr4_3:40659154-40659173 Msa0641020:intron 40.0%
ATCAAAGGAGAATCTGTGGA+AGG - chr4_3:40659169-40659188 Msa0641020:intron 40.0%
! AGTGGTGGAAGAGAAAACAA+TGG - chr4_3:40659247-40659266 Msa0641020:intron 40.0%
GTGGAAGAGAAAACAATGGA+GGG - chr4_3:40659251-40659270 Msa0641020:intron 40.0%
TCCTGTCAATTTCTGTCCTT+TGG + chr4_3:40659693-40659712 None:intergenic 40.0%
AGCAAAAAAGCCACTTGATC+TGG - chr4_3:40659780-40659799 Msa0641020:intron 40.0%
CAGAGAGAATAATTTGGGTC+GGG - chr4_3:40659810-40659829 Msa0641020:intron 40.0%
GATCACATACAACAGCTGTA+TGG - chr4_3:40660074-40660093 Msa0641020:intron 40.0%
!!! TCCCTGCACTTATTTTACCA+TGG - chr4_3:40660160-40660179 Msa0641020:intron 40.0%
ATGTTACCATAGATCCACTC+CGG + chr4_3:40660191-40660210 None:intergenic 40.0%
GGGAAATGATATGTATAGCG+AGG - chr4_3:40660221-40660240 Msa0641020:intron 40.0%
CGAATGGAAATATCATGACG+TGG - chr4_3:40660265-40660284 Msa0641020:intron 40.0%
TTATGGGTAGAAAACACGCT+AGG + chr4_3:40660311-40660330 None:intergenic 40.0%
GAACAATGTAGGTAGAGCTA+AGG - chr4_3:40660927-40660946 Msa0641020:intron 40.0%
TCACACTTTGCATTTGATGG+TGG + chr4_3:40660964-40660983 None:intergenic 40.0%
TCATCATTTGAGCAAGCAAC+AGG - chr4_3:40660986-40661005 Msa0641020:intron 40.0%
TTTGAGCAAGCAACAGGATA+TGG - chr4_3:40660992-40661011 Msa0641020:intron 40.0%
TGAGATTGTCTTCAAGGCTA+GGG + chr4_3:40661038-40661057 None:intergenic 40.0%
TTGAGATTGTCTTCAAGGCT+AGG + chr4_3:40661039-40661058 None:intergenic 40.0%
TAAGACAGCTAGCAAGACTT+TGG - chr4_3:40661099-40661118 Msa0641020:intron 40.0%
AAGACAGCTAGCAAGACTTT+GGG - chr4_3:40661100-40661119 Msa0641020:intron 40.0%
TTTGGGTGAAGATGATTGCT+TGG - chr4_3:40661117-40661136 Msa0641020:intron 40.0%
TTGGGTGAAGATGATTGCTT+GGG - chr4_3:40661118-40661137 Msa0641020:intron 40.0%
TGCTTGGGTGTTAAGTTAGA+AGG - chr4_3:40661133-40661152 Msa0641020:intron 40.0%
!! AGTTAGAAGGTTCTAGGCTT+CGG - chr4_3:40661146-40661165 Msa0641020:intron 40.0%
TGATTCATAGCAATGCTTGG+AGG - chr4_3:40661218-40661237 Msa0641020:CDS 40.0%
! TGGTTTCTAGGGAGGAAATT+GGG + chr4_3:40661741-40661760 None:intergenic 40.0%
! TTGGTTTCTAGGGAGGAAAT+TGG + chr4_3:40661742-40661761 None:intergenic 40.0%
! TGTCTTGGAGTTGGTTTCTA+GGG + chr4_3:40661752-40661771 None:intergenic 40.0%
! TTGTCTTGGAGTTGGTTTCT+AGG + chr4_3:40661753-40661772 None:intergenic 40.0%
TCAAAAGCTTGTCTTGGAGT+TGG + chr4_3:40661761-40661780 None:intergenic 40.0%
ATAACCTTATCGGAGTCCTT+GGG + chr4_3:40662709-40662728 None:intergenic 40.0%
GTTATGCTTGCAAGACAAAC+TGG - chr4_3:40662724-40662743 Msa0641020:intron 40.0%
CAAGACAAACTGGACTTACT+AGG - chr4_3:40662734-40662753 Msa0641020:intron 40.0%
CGACTTAAACCCTAAAATCC+AGG + chr4_3:40663336-40663355 None:intergenic 40.0%
GCTAATTAGCAAGAGGGATA+TGG + chr4_3:40663421-40663440 None:intergenic 40.0%
CAATGATAGAGCTTGAGTCT+TGG - chr4_3:40663446-40663465 Msa0641020:CDS 40.0%
ATTATTCTCCTCTTGCTCCT+TGG + chr4_3:40663585-40663604 None:intergenic 40.0%
AGAGGAGAATAATGACTCCA+AGG - chr4_3:40663592-40663611 Msa0641020:CDS 40.0%
! TCACTGTTGGAGAAAGGTTT+TGG + chr4_3:40663703-40663722 None:intergenic 40.0%
TGCAAGATGGAAACCAGAAT+TGG + chr4_3:40663789-40663808 None:intergenic 40.0%
!! AATTCTGGTTTCCATCTTGC+AGG - chr4_3:40663788-40663807 Msa0641020:CDS 40.0%
AGTCCAAAAAACTCCCATCA+AGG - chr4_3:40663830-40663849 Msa0641020:CDS 40.0%
!!! CTACCTTGATGGGAGTTTTT+TGG + chr4_3:40663836-40663855 None:intergenic 40.0%
TTCAACTTCAAACTCTGTGG+TGG + chr4_3:40663900-40663919 None:intergenic 40.0%
CCTTTCAACTTCAAACTCTG+TGG + chr4_3:40663903-40663922 None:intergenic 40.0%
! CCACAGAGTTTGAAGTTGAA+AGG - chr4_3:40663900-40663919 Msa0641020:CDS 40.0%
!! AATCATCATGGTGGTGGTTA+TGG - chr4_3:40663968-40663987 Msa0641020:CDS 40.0%
TTAGTGAGCAATTAGCTCCT+AGG - chr4_3:40664026-40664045 Msa0641020:CDS 40.0%
CTGAGAGAGAAATCCATGTT+GGG + chr4_3:40664119-40664138 None:intergenic 40.0%
TCTGAGAGAGAAATCCATGT+TGG + chr4_3:40664120-40664139 None:intergenic 40.0%
! ATGAGAAGGAGTAGTGTTGA+TGG + chr4_3:40664200-40664219 None:intergenic 40.0%
AACACTACTCCTTCTCATTC+AGG - chr4_3:40664202-40664221 Msa0641020:intron 40.0%
TCATTCAACTCCTACATACC+TGG + chr4_3:40664486-40664505 None:intergenic 40.0%
TTGGTAAGTACGTAGATGTG+GGG - chr4_3:40664580-40664599 Msa0641020:five_prime_UTR 40.0%
GATGTGGGGGAAATCATTAA+AGG - chr4_3:40664594-40664613 Msa0641020:five_prime_UTR 40.0%
! GTCCAAGTGAATTTTGCGTG+TGG + chr4_3:40657745-40657764 None:intergenic 45.0%
GGGAGCGGAAGAAAGATTAA+TGG + chr4_3:40657844-40657863 None:intergenic 45.0%
AGTAGACAAAGGCAGCTACA+AGG + chr4_3:40657883-40657902 None:intergenic 45.0%
!! CAGTTCTGAAATCCAACCGT+CGG - chr4_3:40658484-40658503 Msa0641020:CDS 45.0%
GTCTGTAAACCTTCTACCGA+CGG + chr4_3:40658503-40658522 None:intergenic 45.0%
TTAAATCCATGAAGCGCGTG+GGG + chr4_3:40658635-40658654 None:intergenic 45.0%
CTTAAATCCATGAAGCGCGT+GGG + chr4_3:40658636-40658655 None:intergenic 45.0%
ACTTAAATCCATGAAGCGCG+TGG + chr4_3:40658637-40658656 None:intergenic 45.0%
CTCAATCAACACCACTTGCT+TGG - chr4_3:40658677-40658696 Msa0641020:CDS 45.0%
GATCCATGAAAGTTGGAAGG+TGG + chr4_3:40658713-40658732 None:intergenic 45.0%
! CTTCCATCCATTTTCCTCCT+CGG - chr4_3:40658775-40658794 Msa0641020:CDS 45.0%
TCGTCCCCACTATAACATGT+GGG - chr4_3:40658811-40658830 Msa0641020:CDS 45.0%
GATCCCCACATGTTATAGTG+GGG + chr4_3:40658818-40658837 None:intergenic 45.0%
CTGATCCCCACATGTTATAG+TGG + chr4_3:40658820-40658839 None:intergenic 45.0%
CACTATAACATGTGGGGATC+AGG - chr4_3:40658818-40658837 Msa0641020:CDS 45.0%
CATAGACCAGTTTATCAGCG+TGG - chr4_3:40658953-40658972 Msa0641020:intron 45.0%
GACAAACCACGCTGATAAAC+TGG + chr4_3:40658962-40658981 None:intergenic 45.0%
AGATACCTCAATCTCACCAG+AGG + chr4_3:40659023-40659042 None:intergenic 45.0%
! TGGTGAGATTGAGGTATCTC+CGG - chr4_3:40659024-40659043 Msa0641020:intron 45.0%
AAAGGAGAATCTGTGGAAGG+AGG - chr4_3:40659172-40659191 Msa0641020:intron 45.0%
GGTGGAAGAGAAAACAATGG+AGG - chr4_3:40659250-40659269 Msa0641020:intron 45.0%
! GCTTGTTAGCATGCTAGATG+AGG - chr4_3:40659333-40659352 Msa0641020:intron 45.0%
GCCAAAGGACAGAAATTGAC+AGG - chr4_3:40659689-40659708 Msa0641020:intron 45.0%
CTGACATTCACCAGATCAAG+TGG + chr4_3:40659793-40659812 None:intergenic 45.0%
GAAGGAATGCACAACTCACA+TGG - chr4_3:40660673-40660692 Msa0641020:intron 45.0%
AGAACAGAAACAGCTCGTTC+AGG + chr4_3:40661259-40661278 None:intergenic 45.0%
!! CTGTTTCTGTTCTTCGTGCT+TGG - chr4_3:40661266-40661285 Msa0641020:CDS 45.0%
TGTGACATGCAGTTATCCCA+AGG - chr4_3:40662690-40662709 Msa0641020:intron 45.0%
TTATCCCAAGGACTCCGATA+AGG - chr4_3:40662702-40662721 Msa0641020:intron 45.0%
CATAACCTTATCGGAGTCCT+TGG + chr4_3:40662710-40662729 None:intergenic 45.0%
AACTGGACTTACTAGGAGTC+AGG - chr4_3:40662741-40662760 Msa0641020:intron 45.0%
GAGCTGGCTAATTAGCAAGA+GGG + chr4_3:40663427-40663446 None:intergenic 45.0%
TGAGCTGGCTAATTAGCAAG+AGG + chr4_3:40663428-40663447 None:intergenic 45.0%
CTCAAGCTCTATCATTGAGC+TGG + chr4_3:40663443-40663462 None:intergenic 45.0%
AGTTCGCTTGTGGAAACCAA+TGG - chr4_3:40663535-40663554 Msa0641020:CDS 45.0%
ATGTCAACATCACCAATGGG+AGG - chr4_3:40663743-40663762 Msa0641020:CDS 45.0%
GGGTCCTTTCAATCCAATTC+TGG - chr4_3:40663773-40663792 Msa0641020:CDS 45.0%
CATCAGATGATCCTGCAAGA+TGG + chr4_3:40663802-40663821 None:intergenic 45.0%
CAGGATCATCTGATGTGCAA+AGG - chr4_3:40663807-40663826 Msa0641020:CDS 45.0%
CAATTAGCTCCTAGGTTCCA+TGG - chr4_3:40664034-40664053 Msa0641020:CDS 45.0%
ACACCATTTCCATGGAACCT+AGG + chr4_3:40664046-40664065 None:intergenic 45.0%
AGGAGGGACGATTGATGAAA+TGG - chr4_3:40664150-40664169 Msa0641020:CDS 45.0%
GGAGGGACGATTGATGAAAT+GGG - chr4_3:40664151-40664170 Msa0641020:CDS 45.0%
GATTTCGTCAAACTCAGCGT+TGG - chr4_3:40664365-40664384 Msa0641020:intron 45.0%
TGGTAAGTACGTAGATGTGG+GGG - chr4_3:40664581-40664600 Msa0641020:five_prime_UTR 45.0%
!!! TTTTTTTTTATTTTTATGAA+CGG - chr4_3:40661539-40661558 Msa0641020:intron 5.0%
!! TATTATTGAAAAAAAAATTA+TGG + chr4_3:40661906-40661925 None:intergenic 5.0%
AAGGATGGAATTCCCGCACA+GGG + chr4_3:40657864-40657883 None:intergenic 50.0%
GACAAAGGCAGCTACAAGGA+TGG + chr4_3:40657879-40657898 None:intergenic 50.0%
GAAATCCAACCGTCGGTAGA+AGG - chr4_3:40658491-40658510 Msa0641020:CDS 50.0%
GTAAACCTTCTACCGACGGT+TGG + chr4_3:40658499-40658518 None:intergenic 50.0%
! ATTGAGTGATGAAGGCGCGT+GGG + chr4_3:40658663-40658682 None:intergenic 50.0%
!! TGTAGGAGTGTCGGTAGTGT+TGG + chr4_3:40658735-40658754 None:intergenic 50.0%
GGAGGAAAATGGATGGAAGG+TGG + chr4_3:40658774-40658793 None:intergenic 50.0%
CGAGGAGGAAAATGGATGGA+AGG + chr4_3:40658777-40658796 None:intergenic 50.0%
TAGCCGAGGAGGAAAATGGA+TGG + chr4_3:40658781-40658800 None:intergenic 50.0%
! CACATGTTATAGTGGGGACG+AGG + chr4_3:40658812-40658831 None:intergenic 50.0%
CTCGTCCCCACTATAACATG+TGG - chr4_3:40658810-40658829 Msa0641020:CDS 50.0%
CGTCCCCACTATAACATGTG+GGG - chr4_3:40658812-40658831 Msa0641020:CDS 50.0%
GTTGCTGTGACAGCGTTATC+AGG + chr4_3:40658854-40658873 None:intergenic 50.0%
! GGTGAGATTGAGGTATCTCC+GGG - chr4_3:40659025-40659044 Msa0641020:intron 50.0%
GGTGGAGTTTCGACCATGAA+CGG - chr4_3:40659070-40659089 Msa0641020:intron 50.0%
TTACCATGGATTTGCCGGAG+TGG - chr4_3:40660174-40660193 Msa0641020:intron 50.0%
GATTTGCCGGAGTGGATCTA+TGG - chr4_3:40660182-40660201 Msa0641020:intron 50.0%
GATGCCGAAATCATCGCGAA+TGG - chr4_3:40660249-40660268 Msa0641020:intron 50.0%
TGGGTAGAAAACACGCTAGG+AGG + chr4_3:40660308-40660327 None:intergenic 50.0%
ATCACCAACTCCGACAACAG+CGG - chr4_3:40661176-40661195 Msa0641020:CDS 50.0%
! CTTGGAGTTGGTTTCTAGGG+AGG + chr4_3:40661749-40661768 None:intergenic 50.0%
! GCTTGAGTCTTGGCCTTTAG+AGG - chr4_3:40663456-40663475 Msa0641020:CDS 50.0%
TAAACGCCAGAGTTCGCTTG+TGG - chr4_3:40663525-40663544 Msa0641020:CDS 50.0%
TGGTTTCCACAAGCGAACTC+TGG + chr4_3:40663534-40663553 None:intergenic 50.0%
GGAAGAAACCAAGGAGCAAG+AGG - chr4_3:40663574-40663593 Msa0641020:CDS 50.0%
ACATCACCAATGGGAGGAGA+AGG - chr4_3:40663749-40663768 Msa0641020:CDS 50.0%
GCTCCTAGGTTCCATGGAAA+TGG - chr4_3:40664040-40664059 Msa0641020:CDS 50.0%
!! CCATGTTGGGTTGAAGAGAG+AGG + chr4_3:40664106-40664125 None:intergenic 50.0%
CCTCTCTCTTCAACCCAACA+TGG - chr4_3:40664103-40664122 Msa0641020:CDS 50.0%
GACGAAATCATGTTGCCACC+AGG + chr4_3:40664354-40664373 None:intergenic 50.0%
TCTTTCTTCCGCTCCCTGTG+CGG - chr4_3:40657848-40657867 Msa0641020:three_prime_UTR 55.0%
CAAGGATGGAATTCCCGCAC+AGG + chr4_3:40657865-40657884 None:intergenic 55.0%
! GATTGAGTGATGAAGGCGCG+TGG + chr4_3:40658664-40658683 None:intergenic 55.0%
ACGGTAGCCGAGGAGGAAAA+TGG + chr4_3:40658785-40658804 None:intergenic 55.0%
! ATAGTGGGGACGAGGAGTCA+CGG + chr4_3:40658804-40658823 None:intergenic 55.0%
! ATTTGCTGCGGGCGAAACTC+TGG + chr4_3:40658926-40658945 None:intergenic 55.0%
GAGTTTCGCCCGCAGCAAAT+TGG - chr4_3:40658926-40658945 Msa0641020:CDS 55.0%
CTTCGCAGCAAACGCCTTAC+CGG - chr4_3:40658993-40659012 Msa0641020:intron 55.0%
GATCCACTCCGGCAAATCCA+TGG + chr4_3:40660180-40660199 None:intergenic 55.0%
TCACCAACTCCGACAACAGC+GGG - chr4_3:40661177-40661196 Msa0641020:CDS 55.0%
AATGCTTGGAGGCCTCAGAG+AGG - chr4_3:40661229-40661248 Msa0641020:CDS 55.0%
TCACCAATGGGAGGAGAAGG+AGG - chr4_3:40663752-40663771 Msa0641020:CDS 55.0%
CACCAATGGGAGGAGAAGGA+GGG - chr4_3:40663753-40663772 Msa0641020:CDS 55.0%
CTTTCTTCCGCTCCCTGTGC+GGG - chr4_3:40657849-40657868 Msa0641020:three_prime_UTR 60.0%
TGGAATTCCCGCACAGGGAG+CGG + chr4_3:40657859-40657878 None:intergenic 60.0%
GCAGCAAACGCCTTACCGGT+CGG - chr4_3:40658997-40659016 Msa0641020:intron 60.0%
CAATCTCACCAGAGGCCGAC+CGG + chr4_3:40659015-40659034 None:intergenic 60.0%
GTCGGCCTCTGGTGAGATTG+AGG - chr4_3:40659015-40659034 Msa0641020:intron 60.0%
CGTTCAGGCAAGCCTCTCTG+AGG + chr4_3:40661244-40661263 None:intergenic 60.0%
GACCCTCCTTCTCCTCCCAT+TGG + chr4_3:40663758-40663777 None:intergenic 60.0%
GGTTCTCCCCACGCGCTTCA+TGG - chr4_3:40658626-40658645 Msa0641020:CDS 65.0%
AGGAGTCACGGTAGCCGAGG+AGG + chr4_3:40658792-40658811 None:intergenic 65.0%
ACGAGGAGTCACGGTAGCCG+AGG + chr4_3:40658795-40658814 None:intergenic 65.0%
TCACCAGAGGCCGACCGGTA+AGG + chr4_3:40659010-40659029 None:intergenic 65.0%
! GAGGTATCTCCGGGTAGCCG+TGG - chr4_3:40659034-40659053 Msa0641020:intron 65.0%
GTATCTCCGGGTAGCCGTGG+AGG - chr4_3:40659037-40659056 Msa0641020:intron 65.0%
CACCACCTTCCTCGCCTCCA+CGG + chr4_3:40659054-40659073 None:intergenic 65.0%
GTGCCCGCTGTTGTCGGAGT+TGG + chr4_3:40661183-40661202 None:intergenic 65.0%
GCTGCAGTGCCCGCTGTTGT+CGG + chr4_3:40661189-40661208 None:intergenic 65.0%
! CAGCGGGCACTGCAGCAACT+TGG - chr4_3:40661193-40661212 Msa0641020:CDS 65.0%
ACGCCTTACCGGTCGGCCTC+TGG - chr4_3:40659004-40659023 Msa0641020:intron 70.0%
TCCTCGCCTCCACGGCTACC+CGG + chr4_3:40659046-40659065 None:intergenic 70.0%
GGTAGCCGTGGAGGCGAGGA+AGG - chr4_3:40659046-40659065 Msa0641020:intron 70.0%
AGCCGTGGAGGCGAGGAAGG+TGG - chr4_3:40659049-40659068 Msa0641020:intron 70.0%
CGTGGAGGCGAGGAAGGTGG+TGG - chr4_3:40659052-40659071 Msa0641020:intron 70.0%
TCCGGGTAGCCGTGGAGGCG+AGG - chr4_3:40659042-40659061 Msa0641020:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 40657734 40664725 40657734 ID=Msa0641020;Name=Msa0641020
chr4_3 mRNA 40657734 40664725 40657734 ID=Msa0641020-mRNA-1;Parent=Msa0641020;Name=Msa0641020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=263|1|1|1|0.75|0.6|5|425|765
chr4_3 exon 40657734 40658950 40657734 ID=Msa0641020-mRNA-1:exon:9165;Parent=Msa0641020-mRNA-1
chr4_3 exon 40659697 40659757 40659697 ID=Msa0641020-mRNA-1:exon:9164;Parent=Msa0641020-mRNA-1
chr4_3 exon 40661148 40661521 40661148 ID=Msa0641020-mRNA-1:exon:9163;Parent=Msa0641020-mRNA-1
chr4_3 exon 40663105 40664219 40663105 ID=Msa0641020-mRNA-1:exon:9162;Parent=Msa0641020-mRNA-1
chr4_3 exon 40664507 40664725 40664507 ID=Msa0641020-mRNA-1:exon:9161;Parent=Msa0641020-mRNA-1
chr4_3 five_prime_UTR 40664507 40664725 40664507 ID=Msa0641020-mRNA-1:five_prime_utr;Parent=Msa0641020-mRNA-1
chr4_3 five_prime_UTR 40664176 40664219 40664176 ID=Msa0641020-mRNA-1:five_prime_utr;Parent=Msa0641020-mRNA-1
chr4_3 CDS 40663105 40664175 40663105 ID=Msa0641020-mRNA-1:cds;Parent=Msa0641020-mRNA-1
chr4_3 CDS 40661148 40661521 40661148 ID=Msa0641020-mRNA-1:cds;Parent=Msa0641020-mRNA-1
chr4_3 CDS 40659697 40659757 40659697 ID=Msa0641020-mRNA-1:cds;Parent=Msa0641020-mRNA-1
chr4_3 CDS 40658159 40658950 40658159 ID=Msa0641020-mRNA-1:cds;Parent=Msa0641020-mRNA-1
chr4_3 three_prime_UTR 40657734 40658158 40657734 ID=Msa0641020-mRNA-1:three_prime_utr;Parent=Msa0641020-mRNA-1
Gene Sequence

>Msa0641020

ATGGTGGATATCAAAACCAAGCTTCAAATTAACAAGCTTATAGATCAAGACACAAATAAACCAAAAAGAAGGTTTTCTTTTTTGATTTTTCCACAATCCAAATTACACGTTAAAGAATTTTCGTACGGAGACAAAAAAAGAGAATTAATTCTGACAGATATGGCAACGTACTTTCATGGCAACAGCAACAGCAACAGCAACAGTTCTGAAATCCAACCGTCGGTAGAAGGTTTACAGACACTTTACCTTATGAATCCAAACTACGTACCTTACTCTGAGGAACCACAAAATCCAACACAAAACATGCTTTTCGCTAATCCCAACGCTACCACTAACAATAATGGTTCTCCCCACGCGCTTCATGGATTTAAGTTTTCCCACGCGCCTTCATCACTCAATCAACACCACTTGCTTGGAGTTACTATTCCACCTTCCAACTTTCATGGATCCAACACTACCGACACTCCTACACAACCATATGAAGTTTCCACCTTCCATCCATTTTCCTCCTCGGCTACCGTGACTCCTCGTCCCCACTATAACATGTGGGGATCAGGTAGCTTTCTACCTGATAACGCTGTCACAGCAACGACAACTGATAGATCAGAATGTTCAGATGTCGTTTCTGTGACAACATCTCCAGAGTTTCGCCCGCAGCAAATTGGTTTTCATAGACCAGTTTATCAGCGTGGTTTGTCTCTCAGTCTTTCTTCGCAGCAAACGCCTTACCGGTCGGCCTCTGGTGAGATTGAGGTATCTCCGGGTAGCCGTGGAGGCGAGGAAGGTGGTGGAGTTTCGACCATGAACGGTGTTATTTTTGGCTCGAAGTATATGAAAGTAGCACAAGAGCTTCTTGATGAAGTTGTGAATGTGGATAAGGGAATCATCAAAGGAGAATCTGTGGAAGGAGGTAATAGTAATAACAACAAAGAGAAGAGGAAAGCAAATATTGAATCTAGTTCAAGTGGTGGAAGAGAAAACAATGGAGGGAAACAAGTAGCTGAATTAAGCACTGCACAAAGACAAGAACTTCAGATGAAGAAGTCAAAGCTTGTTAGCATGCTAGATGAGGTAGAGCTAAGGTACAGACAATACCACCATCAAATGCAAAGTGTGATATCATCATTTGAGCAAGCAACAGGATATGGAGCATCAAAATCTTACACATCCCTAGCCTTGAAGACAATCTCAAAGCAATTTCGAAGTCTAAAAGATTCAATCTCTTCACAAATTAAGACAGCTAGCAAGACTTTGGGTGAAGATGATTGCTTGGGTGTTAAGTTAGAAGGTTCTAGGCTTCGGTATGTCGATCACCAACTCCGACAACAGCGGGCACTGCAGCAACTTGGAATGATTCATAGCAATGCTTGGAGGCCTCAGAGAGGCTTGCCTGAACGAGCTGTTTCTGTTCTTCGTGCTTGGCTTTTTGAACATTTCTTGCACCCTTATCCCAAGGACTCCGATAAGGTTATGCTTGCAAGACAAACTGGACTTACTAGGAGTCAGGTATCTAACTGGTTTATAAACGCCAGAGTTCGCTTGTGGAAACCAATGGTTGAAGAAATGTACTTGGAAGAAACCAAGGAGCAAGAGGAGAATAATGACTCCAAGGATAACACAAATAGATCAAAAGAATTAGGTGCCACAAAACTTGATCAAATTAATAATCTTCATTCAAAAGCAGAAAACTTCAACAACCAAAACCTTTCTCCAACAGTGATTTCAAGTTCCAATAATTCAATGTCAACATCACCAATGGGAGGAGAAGGAGGGTCCTTTCAATCCAATTCTGGTTTCCATCTTGCAGGATCATCTGATGTGCAAAGGAGTCCAAAAAACTCCCATCAAGGTAGTTTCCTTTCAATGGACATGGAATTGAAGTCTAATAGAGAGTCCACCACAGAGTTTGAAGTTGAAAGGCATAATCATGACAAAAATGAATACCCTTTATTGAGTGGAAATGAAAATCATCATGGTGGTGGTTATGGATCATTCTCAATGGAAGATGTTAGAAGGTTTAATGTTAGTGAGCAATTAGCTCCTAGGTTCCATGGAAATGGTGTTTCTCTAACTCTTGGACTACCTCATAATGAAAATATTCCTCTCTCTTCAACCCAACATGGATTTCTCTCTCAGAATTTACATTTAGGAGGGACGATTGATGAAATGGGAAGCAATGAGAATGAGTTTTGTACCATCAACACTACTCCTTCTCATTCAGGAACAAATTATGAGAGTATTGATATTGAAAACAGAAAGAGGTTTGCTGCTCAATTATTGCGAAATTTTGTGACCTAG
Protein sequence

>Msa0641020

MVDIKTKLQINKLIDQDTNKPKRRFSFLIFPQSKLHVKEFSYGDKKRELILTDMATYFHGNSNSNSNSSEIQPSVEGLQTLYLMNPNYVPYSEEPQNPTQNMLFANPNATTNNNGSPHALHGFKFSHAPSSLNQHHLLGVTIPPSNFHGSNTTDTPTQPYEVSTFHPFSSSATVTPRPHYNMWGSGSFLPDNAVTATTTDRSECSDVVSVTTSPEFRPQQIGFHRPVYQRGLSLSLSSQQTPYRSASGEIEVSPGSRGGEEGGGVSTMNGVIFGSKYMKVAQELLDEVVNVDKGIIKGESVEGGNSNNNKEKRKANIESSSSGGRENNGGKQVAELSTAQRQELQMKKSKLVSMLDEVELRYRQYHHQMQSVISSFEQATGYGASKSYTSLALKTISKQFRSLKDSISSQIKTASKTLGEDDCLGVKLEGSRLRYVDHQLRQQRALQQLGMIHSNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQEENNDSKDNTNRSKELGATKLDQINNLHSKAENFNNQNLSPTVISSSNNSMSTSPMGGEGGSFQSNSGFHLAGSSDVQRSPKNSHQGSFLSMDMELKSNRESTTEFEVERHNHDKNEYPLLSGNENHHGGGYGSFSMEDVRRFNVSEQLAPRFHGNGVSLTLGLPHNENIPLSSTQHGFLSQNLHLGGTIDEMGSNENEFCTINTTPSHSGTNYESIDIENRKRFAAQLLRNFVT*