Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170060 | AES61068.1 | 90.000 | 50 | 5 | 0 | 1 | 50 | 1 | 50 | 6.14e-22 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170060 | G7I4T2 | 90.000 | 50 | 5 | 0 | 1 | 50 | 1 | 50 | 2.93e-22 | 93.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030050 | Msa0170060 | 0.838942 | 2.130799e-57 | -8.615850e-47 |
| Msa0077430 | Msa0170060 | 0.847153 | 1.384788e-59 | -8.615850e-47 |
| Msa0081610 | Msa0170060 | -0.805758 | 1.143674e-49 | -8.615850e-47 |
| Msa0125260 | Msa0170060 | 0.816335 | 5.831640e-52 | -8.615850e-47 |
| Msa0170060 | Msa1413150 | 0.804002 | 2.661948e-49 | -8.615850e-47 |
| Msa0170060 | Msa1429470 | 0.807782 | 4.272666e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170060 | MtrunA17_Chr1g0187331 | 90.000 | 50 | 5 | 0 | 1 | 50 | 1 | 50 | 6.73e-26 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170060 | AT4G14305.1 | 64.000 | 50 | 18 | 0 | 1 | 50 | 1 | 50 | 4.38e-17 | 70.9 |
Find 43 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTTGCACAGAAGCTTTC+TGG | 0.182029 | 1_4:-53634722 | Msa0170060:CDS |
| AAAGTTTATCCATCAATAAA+TGG | 0.290399 | 1_4:+53634257 | None:intergenic |
| CAGAATAGTCTTCACACATT+TGG | 0.312204 | 1_4:-53630941 | Msa0170060:three_prime_UTR |
| AGAATAGTCTTCACACATTT+GGG | 0.361638 | 1_4:-53630940 | Msa0170060:three_prime_UTR |
| ACATTATCTCCATTTATTGA+TGG | 0.376713 | 1_4:-53634266 | Msa0170060:exon |
| ATACCTTCCATGCCGTCAAC+TGG | 0.382299 | 1_4:+53632865 | None:intergenic |
| TTCGCCTATGCAGGACCCTT+TGG | 0.383790 | 1_4:-53634289 | Msa0170060:CDS |
| TATAATAAACAATATAAAAC+TGG | 0.387599 | 1_4:+53635024 | None:intergenic |
| TATTATGGCTTGATTATTGA+AGG | 0.419845 | 1_4:-53633993 | Msa0170060:intron |
| CAATGAAACTGTTGCTAAGA+AGG | 0.429878 | 1_4:-53634218 | Msa0170060:intron |
| CATGGTGATTGATCAACCTT+TGG | 0.446946 | 1_4:+53634942 | None:intergenic |
| TGTGAAGACTATTCTGTCCT+AGG | 0.466264 | 1_4:+53630948 | None:intergenic |
| ATTACTTCATCAGTTCTAGC+TGG | 0.466658 | 1_4:-53634755 | Msa0170060:CDS |
| GGAACTGCAAAGGCATATAC+TGG | 0.477910 | 1_4:+53632720 | None:intergenic |
| CTATATGGTTTCGCCTATGC+AGG | 0.488768 | 1_4:-53634298 | Msa0170060:CDS |
| CTACCCTACTGTCCAGTTGA+CGG | 0.495026 | 1_4:-53632877 | Msa0170060:three_prime_UTR |
| CTGACAAAGTCAACCATGCT+TGG | 0.498624 | 1_4:-53634918 | Msa0170060:CDS |
| ACAGCTTTGTTGGTTCATGC+TGG | 0.506633 | 1_4:-53632685 | Msa0170060:intron |
| GTTGGTTTGCAGGAAGACCT+TGG | 0.511703 | 1_4:-53632929 | Msa0170060:intron |
| GGAGATATTTGTTCCAAGCA+TGG | 0.529142 | 1_4:+53634905 | None:intergenic |
| CATGCCGTCAACTGGACAGT+AGG | 0.531283 | 1_4:+53632873 | None:intergenic |
| AAATGGAGATAATGTCCAAA+GGG | 0.531298 | 1_4:+53634274 | None:intergenic |
| AGCAAATAACTAGTTCTCCA+TGG | 0.534969 | 1_4:-53634037 | Msa0170060:three_prime_UTR |
| GAGAACTAGTTATTTGCTCA+AGG | 0.536726 | 1_4:+53634042 | None:intergenic |
| AGTTGCTATCAAGAAGGCCT+AGG | 0.548195 | 1_4:-53630965 | Msa0170060:three_prime_UTR |
| TGTCCAGTTGACGGCATGGA+AGG | 0.551800 | 1_4:-53632868 | Msa0170060:intron |
| TAGTCTTCACACATTTGGGA+TGG | 0.559951 | 1_4:-53630936 | Msa0170060:three_prime_UTR |
| GAGGATGAAGCTTAAGCTGA+AGG | 0.563374 | 1_4:+53634884 | None:intergenic |
| TTGTTCATGACTATATTCCA+AGG | 0.574186 | 1_4:+53632912 | None:intergenic |
| CTACTGTCCAGTTGACGGCA+TGG | 0.576064 | 1_4:-53632872 | Msa0170060:three_prime_UTR |
| ATGTCCAAAGGGTCCTGCAT+AGG | 0.576071 | 1_4:+53634285 | None:intergenic |
| ATGCCGTCAACTGGACAGTA+GGG | 0.577736 | 1_4:+53632874 | None:intergenic |
| TCTTTCTGAATCTGAAAGCA+AGG | 0.580113 | 1_4:-53630996 | Msa0170060:three_prime_UTR |
| ATCATCAGTTGCTATCAAGA+AGG | 0.586636 | 1_4:-53630971 | Msa0170060:three_prime_UTR |
| GCTTCATCCTCTCAGAACCA+AGG | 0.597074 | 1_4:-53634872 | Msa0170060:intron |
| TAAATGGAGATAATGTCCAA+AGG | 0.616169 | 1_4:+53634273 | None:intergenic |
| TAATTCACCCAACCAACGAT+AGG | 0.618119 | 1_4:+53632743 | None:intergenic |
| AATAAAACACGGAACTGCAA+AGG | 0.621872 | 1_4:+53632710 | None:intergenic |
| ATGGTTGACTTTGTCAGACA+TGG | 0.646371 | 1_4:+53634924 | None:intergenic |
| AATGAAACCTTGGTTCTGAG+AGG | 0.655224 | 1_4:+53634865 | None:intergenic |
| CAAAGCTGTGAAATAAAACA+CGG | 0.671747 | 1_4:+53632699 | None:intergenic |
| CCGCAACAAGAAAACAATAG+CGG | 0.709181 | 1_4:-53634972 | Msa0170060:five_prime_UTR |
| CAATAGCGGAGACAGACCAA+AGG | 0.728246 | 1_4:-53634958 | Msa0170060:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAAACAATATAAAAC+TGG | + | chr1_4:53630872-53630891 | None:intergenic | 10.0% |
| !!! | ATAACATTTAAAATTATTAC+TGG | + | chr1_4:53631346-53631365 | None:intergenic | 10.0% |
| !! | GAAATAAAAAAATTTCAATA+TGG | + | chr1_4:53634569-53634588 | None:intergenic | 10.0% |
| !! | CAATTAATACTAAATATTAG+AGG | + | chr1_4:53632112-53632131 | None:intergenic | 15.0% |
| !! | TCAAAATTATCAATGTTTAT+AGG | - | chr1_4:53632212-53632231 | Msa0170060:intron | 15.0% |
| !! | TAATGATTATTGTAAACTTA+GGG | + | chr1_4:53632249-53632268 | None:intergenic | 15.0% |
| !! | ATAATGATTATTGTAAACTT+AGG | + | chr1_4:53632250-53632269 | None:intergenic | 15.0% |
| !! | GAAAACATTTATAGAATAAA+AGG | - | chr1_4:53632407-53632426 | Msa0170060:intron | 15.0% |
| !! | ATGATTAAGATATTATCAAT+AGG | + | chr1_4:53632860-53632879 | None:intergenic | 15.0% |
| !! | TAATGTCATATTTCTTATAA+AGG | - | chr1_4:53633390-53633409 | Msa0170060:intron | 15.0% |
| !! | AAAATAGTAAAATGAAACCT+TGG | + | chr1_4:53631041-53631060 | None:intergenic | 20.0% |
| !! | AAAGTTTATCCATCAATAAA+TGG | + | chr1_4:53631639-53631658 | None:intergenic | 20.0% |
| !! | GAATGAAATATCATATTACT+AGG | - | chr1_4:53631824-53631843 | Msa0170060:intron | 20.0% |
| !!! | TTTTTGTTCATGATGTATTA+TGG | - | chr1_4:53631885-53631904 | Msa0170060:intron | 20.0% |
| !!! | ACATTGATAATTTTGAACTT+CGG | + | chr1_4:53632208-53632227 | None:intergenic | 20.0% |
| !! | TCATTATTTACAAGTCAATA+TGG | - | chr1_4:53632263-53632282 | Msa0170060:intron | 20.0% |
| !! | AATTTAAGAAAGTAAGGATT+TGG | + | chr1_4:53632486-53632505 | None:intergenic | 20.0% |
| !! | TTAACATTGAATTTAATTCC+CGG | - | chr1_4:53632524-53632543 | Msa0170060:intron | 20.0% |
| !!! | ATGATGCTTAATCATTATTT+TGG | + | chr1_4:53633308-53633327 | None:intergenic | 20.0% |
| !! | AAATAATGATTAAGCATCAT+TGG | - | chr1_4:53633308-53633327 | Msa0170060:intron | 20.0% |
| !!! | TAATGTTGATCCTTTTATAT+TGG | - | chr1_4:53633435-53633454 | Msa0170060:intron | 20.0% |
| !!! | AATGTTGATCCTTTTATATT+GGG | - | chr1_4:53633436-53633455 | Msa0170060:intron | 20.0% |
| !!! | TCACAATTTTTACTTAATGA+AGG | + | chr1_4:53633543-53633562 | None:intergenic | 20.0% |
| !! | GCAATTAAAATTCAAATTGA+GGG | + | chr1_4:53633607-53633626 | None:intergenic | 20.0% |
| !! | TGCAATTAAAATTCAAATTG+AGG | + | chr1_4:53633608-53633627 | None:intergenic | 20.0% |
| !!! | GAATATTATTTTGAGTATGA+TGG | + | chr1_4:53633689-53633708 | None:intergenic | 20.0% |
| !!! | TGTATCTAGTTTCAATATTT+TGG | - | chr1_4:53633833-53633852 | Msa0170060:intron | 20.0% |
| !! | TGTGAAAATGCATTATTATA+GGG | + | chr1_4:53633898-53633917 | None:intergenic | 20.0% |
| !! | ATGTGAAAATGCATTATTAT+AGG | + | chr1_4:53633899-53633918 | None:intergenic | 20.0% |
| !! | TTTCTAAATTATATCACACT+AGG | - | chr1_4:53634591-53634610 | Msa0170060:intron | 20.0% |
| !! | CACTAGGATATATTTATAAT+AGG | - | chr1_4:53634607-53634626 | Msa0170060:intron | 20.0% |
| !!! | TTTTCATACAGAAAAAAGTT+TGG | + | chr1_4:53634734-53634753 | None:intergenic | 20.0% |
| !! | ATGAATTATTTAGCAGTTAA+TGG | - | chr1_4:53634843-53634862 | Msa0170060:intron | 20.0% |
| ! | GATGAAGTAGAAGTTATTAT+AGG | - | chr1_4:53631510-53631529 | Msa0170060:intron | 25.0% |
| !!! | GAAGTTATTATAGGTTGATT+TGG | - | chr1_4:53631519-53631538 | Msa0170060:intron | 25.0% |
| !!! | CAAATTATTTTGCAGCTATA+TGG | - | chr1_4:53631580-53631599 | Msa0170060:intron | 25.0% |
| ! | ACATTATCTCCATTTATTGA+TGG | - | chr1_4:53631627-53631646 | Msa0170060:intron | 25.0% |
| !!! | ATTGATGGATAAACTTTTCA+AGG | - | chr1_4:53631642-53631661 | Msa0170060:intron | 25.0% |
| !!! | TTGATGGATAAACTTTTCAA+GGG | - | chr1_4:53631643-53631662 | Msa0170060:intron | 25.0% |
| ! | CTATTTATTCCTATAACCAA+AGG | + | chr1_4:53631734-53631753 | None:intergenic | 25.0% |
| !! | TTTTCATAAAACAAGTACCA+GGG | + | chr1_4:53631796-53631815 | None:intergenic | 25.0% |
| !! | TTTTTCATAAAACAAGTACC+AGG | + | chr1_4:53631797-53631816 | None:intergenic | 25.0% |
| ! | TATTATGGCTTGATTATTGA+AGG | - | chr1_4:53631900-53631919 | Msa0170060:intron | 25.0% |
| !! | TGTAACTTGTAAAGTTGTAA+TGG | - | chr1_4:53632031-53632050 | Msa0170060:intron | 25.0% |
| ! | GTTCGCAATATCATATATTA+AGG | + | chr1_4:53632378-53632397 | None:intergenic | 25.0% |
| ! | TTACCTTACAAGTATATCAA+GGG | - | chr1_4:53632452-53632471 | Msa0170060:intron | 25.0% |
| ! | CAGAACAATTTAAGAAAGTA+AGG | + | chr1_4:53632492-53632511 | None:intergenic | 25.0% |
| !! | TAGATGAAGTTTAAGCTTTT+TGG | - | chr1_4:53632773-53632792 | Msa0170060:intron | 25.0% |
| ! | TTAAGATATTATCAATAGGC+TGG | + | chr1_4:53632856-53632875 | None:intergenic | 25.0% |
| ! | ATCATTAATCTTCTTCTGTT+TGG | - | chr1_4:53633057-53633076 | Msa0170060:intron | 25.0% |
| !!! | CAGTTTGAATAGTTAGTTTT+TGG | - | chr1_4:53633089-53633108 | Msa0170060:intron | 25.0% |
| ! | CATGCACTATAAATTACAAA+AGG | - | chr1_4:53633357-53633376 | Msa0170060:intron | 25.0% |
| !!! | TGAATTTTAATTGCACCATA+AGG | - | chr1_4:53633613-53633632 | Msa0170060:intron | 25.0% |
| ! | AATGCATATTATGTATAACC+AGG | + | chr1_4:53633645-53633664 | None:intergenic | 25.0% |
| !!! | ATCTAGTTTCAATATTTTGG+AGG | - | chr1_4:53633836-53633855 | Msa0170060:intron | 25.0% |
| ! | ACAGATAAATCATATTAGTC+GGG | + | chr1_4:53634021-53634040 | None:intergenic | 25.0% |
| ! | CACAGATAAATCATATTAGT+CGG | + | chr1_4:53634022-53634041 | None:intergenic | 25.0% |
| ! | CTATAAGAATGATTGTTAGT+AGG | - | chr1_4:53634053-53634072 | Msa0170060:intron | 25.0% |
| ! | CAATCATATATTCATACTAG+TGG | + | chr1_4:53634090-53634109 | None:intergenic | 25.0% |
| ! | TAAAAATCACAGATGGAAAA+AGG | - | chr1_4:53634433-53634452 | Msa0170060:intron | 25.0% |
| ! | TAATTGATATTGTGCAGTAA+AGG | - | chr1_4:53634684-53634703 | Msa0170060:intron | 25.0% |
| ! | AGAAAAAAGTTTGGTAGAAT+TGG | + | chr1_4:53634725-53634744 | None:intergenic | 25.0% |
| !! | TGTGTGTGTTTTGTTATGTT+AGG | - | chr1_4:53631113-53631132 | Msa0170060:intron | 30.0% |
| !! | GTTATTATAGGTTGATTTGG+TGG | - | chr1_4:53631522-53631541 | Msa0170060:intron | 30.0% |
| AAATGGAGATAATGTCCAAA+GGG | + | chr1_4:53631622-53631641 | None:intergenic | 30.0% | |
| TAAATGGAGATAATGTCCAA+AGG | + | chr1_4:53631623-53631642 | None:intergenic | 30.0% | |
| !! | TGATGGATAAACTTTTCAAG+GGG | - | chr1_4:53631644-53631663 | Msa0170060:intron | 30.0% |
| ATGAACAAAAAGTTGTTCCA+TGG | + | chr1_4:53631876-53631895 | None:intergenic | 30.0% | |
| ! | GAATGTCAATTCTGTTTTCT+TGG | + | chr1_4:53632090-53632109 | None:intergenic | 30.0% |
| TTCTGCTTAATTCCTAACTT+TGG | - | chr1_4:53632140-53632159 | Msa0170060:intron | 30.0% | |
| ! | TTAATTCCTAACTTTGGTTC+TGG | - | chr1_4:53632146-53632165 | Msa0170060:intron | 30.0% |
| ! | AAAGTTTTGCACCGAAATTT+GGG | + | chr1_4:53632336-53632355 | None:intergenic | 30.0% |
| ! | AAAAGTTTTGCACCGAAATT+TGG | + | chr1_4:53632337-53632356 | None:intergenic | 30.0% |
| CTTACCTTACAAGTATATCA+AGG | - | chr1_4:53632451-53632470 | Msa0170060:intron | 30.0% | |
| AACCAAACTGAAATAGTGAA+GGG | - | chr1_4:53632663-53632682 | Msa0170060:intron | 30.0% | |
| TTGTTCATGACTATATTCCA+AGG | + | chr1_4:53632984-53633003 | None:intergenic | 30.0% | |
| AACTATTCAAACTGTTCCAT+TGG | + | chr1_4:53633083-53633102 | None:intergenic | 30.0% | |
| CAAAGCTGTGAAATAAAACA+CGG | + | chr1_4:53633197-53633216 | None:intergenic | 30.0% | |
| !!! | GTTTTATTTCACAGCTTTGT+TGG | - | chr1_4:53633198-53633217 | Msa0170060:intron | 30.0% |
| AATGATTAAGCATCATTGGT+TGG | - | chr1_4:53633312-53633331 | Msa0170060:intron | 30.0% | |
| ATCACAATATAGTTGAAAGC+CGG | + | chr1_4:53633463-53633482 | None:intergenic | 30.0% | |
| !!! | ATTTTAATTGCACCATAAGG+TGG | - | chr1_4:53633616-53633635 | Msa0170060:intron | 30.0% |
| TGATTTATGATCATTGTCTG+TGG | - | chr1_4:53633742-53633761 | Msa0170060:intron | 30.0% | |
| AGGATATTTCATTCTCTACT+AGG | - | chr1_4:53633856-53633875 | Msa0170060:intron | 30.0% | |
| GCATTATTATAGGGAAAAGA+TGG | + | chr1_4:53633889-53633908 | None:intergenic | 30.0% | |
| CGACTAATATGATTTATCTG+TGG | - | chr1_4:53634020-53634039 | Msa0170060:three_prime_UTR | 30.0% | |
| !! | CTCACTAATGGATTAAATCA+TGG | + | chr1_4:53634166-53634185 | None:intergenic | 30.0% |
| AATCCATTAGTGAGAAAAAG+AGG | - | chr1_4:53634172-53634191 | Msa0170060:intron | 30.0% | |
| ! | GTTTTCCACAAGTTACAAAT+TGG | - | chr1_4:53634298-53634317 | Msa0170060:CDS | 30.0% |
| GTTTACCAATTTGTAACTTG+TGG | + | chr1_4:53634306-53634325 | None:intergenic | 30.0% | |
| AGTTACAAATTGGTAAACTG+AGG | - | chr1_4:53634308-53634327 | Msa0170060:intron | 30.0% | |
| GTTACAAATTGGTAAACTGA+GGG | - | chr1_4:53634309-53634328 | Msa0170060:intron | 30.0% | |
| ATGTTAGTAAGCTTTCTTGA+TGG | - | chr1_4:53634806-53634825 | Msa0170060:intron | 30.0% | |
| TGTTAGTAAGCTTTCTTGAT+GGG | - | chr1_4:53634807-53634826 | Msa0170060:intron | 30.0% | |
| TTGATTTACTTTCTTGCATC+AGG | - | chr1_4:53634870-53634889 | Msa0170060:intron | 30.0% | |
| TGATTTACTTTCTTGCATCA+GGG | - | chr1_4:53634871-53634890 | Msa0170060:intron | 30.0% | |
| AGAATAGTCTTCACACATTT+GGG | - | chr1_4:53634953-53634972 | Msa0170060:five_prime_UTR | 30.0% | |
| ! | ATTACTTCATCAGTTCTAGC+TGG | - | chr1_4:53631138-53631157 | Msa0170060:intron | 35.0% |
| ! | CAGAAGGATTCTTCTTTTCA+TGG | - | chr1_4:53631212-53631231 | Msa0170060:intron | 35.0% |
| ! | ATGCCTCCAATCAAAAGTAT+CGG | - | chr1_4:53631403-53631422 | Msa0170060:intron | 35.0% |
| !!! | ATAGCACCGATACTTTTGAT+TGG | + | chr1_4:53631412-53631431 | None:intergenic | 35.0% |
| ! | TGGTGGTAGTTGAATTTTGA+AGG | - | chr1_4:53631539-53631558 | Msa0170060:intron | 35.0% |
| !! | AGTTGAATTTTGAAGGTCTG+TGG | - | chr1_4:53631546-53631565 | Msa0170060:intron | 35.0% |
| !! | AAACTTTTCAAGGGGAAGAA+AGG | - | chr1_4:53631652-53631671 | Msa0170060:intron | 35.0% |
| CAATGAAACTGTTGCTAAGA+AGG | - | chr1_4:53631675-53631694 | Msa0170060:intron | 35.0% | |
| ATTGTGTGTACTATGTCCTT+TGG | - | chr1_4:53631715-53631734 | Msa0170060:intron | 35.0% | |
| GTACTATGTCCTTTGGTTAT+AGG | - | chr1_4:53631722-53631741 | Msa0170060:intron | 35.0% | |
| ! | GTATTTTGTGTTGTGTGATC+AGG | - | chr1_4:53631753-53631772 | Msa0170060:intron | 35.0% |
| GAGAACTAGTTATTTGCTCA+AGG | + | chr1_4:53631854-53631873 | None:intergenic | 35.0% | |
| ! | AGCAAATAACTAGTTCTCCA+TGG | - | chr1_4:53631856-53631875 | Msa0170060:intron | 35.0% |
| ! | ATTCTGTTTTCTTGGTAGAG+AGG | + | chr1_4:53632082-53632101 | None:intergenic | 35.0% |
| ATAGTACCAGAACCAAAGTT+AGG | + | chr1_4:53632155-53632174 | None:intergenic | 35.0% | |
| AGACCTTCTATCCCAAATTT+CGG | - | chr1_4:53632322-53632341 | Msa0170060:intron | 35.0% | |
| AGACCCTTGATATACTTGTA+AGG | + | chr1_4:53632458-53632477 | None:intergenic | 35.0% | |
| ACATTGAATTTAATTCCCGG+AGG | - | chr1_4:53632527-53632546 | Msa0170060:intron | 35.0% | |
| GAACCAAACTGAAATAGTGA+AGG | - | chr1_4:53632662-53632681 | Msa0170060:intron | 35.0% | |
| !! | GCTGATTTTTACTCACAGAA+TGG | - | chr1_4:53632815-53632834 | Msa0170060:intron | 35.0% |
| !! | TAGGCTGGAATTGTTTTATG+AGG | + | chr1_4:53632841-53632860 | None:intergenic | 35.0% |
| ! | TTTGAAGCACTATGCAATGA+AGG | + | chr1_4:53632931-53632950 | None:intergenic | 35.0% |
| TGCTTCAAAATTAAAGCGTG+AGG | - | chr1_4:53632942-53632961 | Msa0170060:intron | 35.0% | |
| TCAAAATTAAAGCGTGAGGT+TGG | - | chr1_4:53632946-53632965 | Msa0170060:intron | 35.0% | |
| AATAAAACACGGAACTGCAA+AGG | + | chr1_4:53633186-53633205 | None:intergenic | 35.0% | |
| !! | GTTGATAGTACTGTGAGTAT+AGG | - | chr1_4:53633334-53633353 | Msa0170060:intron | 35.0% |
| ! | TGATCCTTTTATATTGGGTC+CGG | - | chr1_4:53633441-53633460 | Msa0170060:intron | 35.0% |
| GTCAGTACATGTACATCATT+AGG | - | chr1_4:53633486-53633505 | Msa0170060:intron | 35.0% | |
| ! | TGAGTATGATGGAATAGTCT+CGG | + | chr1_4:53633678-53633697 | None:intergenic | 35.0% |
| CAGTACAACTATACACGATT+TGG | + | chr1_4:53633724-53633743 | None:intergenic | 35.0% | |
| ! | TCTTGACTTTTGTCAAGTAC+TGG | - | chr1_4:53633782-53633801 | Msa0170060:intron | 35.0% |
| TAACCAACATAAGTCACCAT+CGG | - | chr1_4:53633973-53633992 | Msa0170060:intron | 35.0% | |
| TGATTGTTAGTAGGAAGAGA+AGG | - | chr1_4:53634062-53634081 | Msa0170060:intron | 35.0% | |
| ! | ATGCCTCTTTTTCTCACTAA+TGG | + | chr1_4:53634178-53634197 | None:intergenic | 35.0% |
| ACATCTTGGTTATAGTATGC+TGG | + | chr1_4:53634219-53634238 | None:intergenic | 35.0% | |
| AGCATACTATAACCAAGATG+TGG | - | chr1_4:53634218-53634237 | Msa0170060:intron | 35.0% | |
| !! | CTTGTGGAAAACTGTTTTAG+TGG | + | chr1_4:53634290-53634309 | None:intergenic | 35.0% |
| !! | GCGCTTTTAAAAATCACAGA+TGG | - | chr1_4:53634426-53634445 | Msa0170060:intron | 35.0% |
| AAATCACAGATGGAAAAAGG+TGG | - | chr1_4:53634436-53634455 | Msa0170060:intron | 35.0% | |
| GATTCTGAACTTGTGAATAC+AGG | - | chr1_4:53634480-53634499 | Msa0170060:intron | 35.0% | |
| AATACAGGACTCCATAGATT+TGG | - | chr1_4:53634495-53634514 | Msa0170060:intron | 35.0% | |
| ! | TCATTGAAGTTTTCACCATC+AGG | + | chr1_4:53634531-53634550 | None:intergenic | 35.0% |
| AAAACTTCAATGAACCTTGC+TGG | - | chr1_4:53634538-53634557 | Msa0170060:intron | 35.0% | |
| CATGCATAGTACTATTAGTC+AGG | + | chr1_4:53634789-53634808 | None:intergenic | 35.0% | |
| TCTTTCTGAATCTGAAAGCA+AGG | - | chr1_4:53634897-53634916 | Msa0170060:CDS | 35.0% | |
| ATCATCAGTTGCTATCAAGA+AGG | - | chr1_4:53634922-53634941 | Msa0170060:CDS | 35.0% | |
| CAGAATAGTCTTCACACATT+TGG | - | chr1_4:53634952-53634971 | Msa0170060:five_prime_UTR | 35.0% | |
| ! | CCGCTATTGTTTTCTTGTTG+CGG | + | chr1_4:53630924-53630943 | None:intergenic | 40.0% |
| CCGCAACAAGAAAACAATAG+CGG | - | chr1_4:53630921-53630940 | Msa0170060:intron | 40.0% | |
| CATGGTGATTGATCAACCTT+TGG | + | chr1_4:53630954-53630973 | None:intergenic | 40.0% | |
| ! | ATGGTTGACTTTGTCAGACA+TGG | + | chr1_4:53630972-53630991 | None:intergenic | 40.0% |
| GGAGATATTTGTTCCAAGCA+TGG | + | chr1_4:53630991-53631010 | None:intergenic | 40.0% | |
| !! | AATGAAACCTTGGTTCTGAG+AGG | + | chr1_4:53631031-53631050 | None:intergenic | 40.0% |
| CTAAGAAGCTTCAGTTCAGA+AGG | - | chr1_4:53631196-53631215 | Msa0170060:intron | 40.0% | |
| !! | CTTTTGATTGGAGGCATGTT+TGG | + | chr1_4:53631400-53631419 | None:intergenic | 40.0% |
| ! | TTCTATGTTTTCCTTAGCCC+TGG | - | chr1_4:53631776-53631795 | Msa0170060:intron | 40.0% |
| TAAAACAAGTACCAGGGCTA+AGG | + | chr1_4:53631790-53631809 | None:intergenic | 40.0% | |
| ! | TGTTTTCTTGGTAGAGAGGT+GGG | + | chr1_4:53632078-53632097 | None:intergenic | 40.0% |
| TTCCTTATATTGCTCTCCTC+CGG | + | chr1_4:53632546-53632565 | None:intergenic | 40.0% | |
| GACCCTTCACTATTTCAGTT+TGG | + | chr1_4:53632668-53632687 | None:intergenic | 40.0% | |
| ATCTTCTTCTGTTTGGCCAA+TGG | - | chr1_4:53633064-53633083 | Msa0170060:intron | 40.0% | |
| ! | GTCTTTTGAACGTGCAGTTT+TGG | - | chr1_4:53633127-53633146 | Msa0170060:intron | 40.0% |
| TAATTCACCCAACCAACGAT+AGG | + | chr1_4:53633153-53633172 | None:intergenic | 40.0% | |
| AAAGCCGGACCCAATATAAA+AGG | + | chr1_4:53633448-53633467 | None:intergenic | 40.0% | |
| TTAGGCCACTAAGATTGCTT+TGG | - | chr1_4:53633504-53633523 | Msa0170060:intron | 40.0% | |
| TTGTGAAGATGCATGCAATG+TGG | - | chr1_4:53633557-53633576 | Msa0170060:intron | 40.0% | |
| ATAACCAGGTAACCACCTTA+TGG | + | chr1_4:53633631-53633650 | None:intergenic | 40.0% | |
| GAAACAAGTTTGACAACGCT+AGG | - | chr1_4:53633926-53633945 | Msa0170060:intron | 40.0% | |
| AACCAACATAAGTCACCATC+GGG | - | chr1_4:53633974-53633993 | Msa0170060:intron | 40.0% | |
| ! | ATGGTGAATTCTTTTCCCAC+TGG | + | chr1_4:53634147-53634166 | None:intergenic | 40.0% |
| TGCATTTGTCTTCCACATCT+TGG | + | chr1_4:53634233-53634252 | None:intergenic | 40.0% | |
| ! | ACGATTGTAACTTGCATCTC+AGG | - | chr1_4:53634257-53634276 | Msa0170060:exon | 40.0% |
| AGAAACAGTGGCCAGAAATA+TGG | - | chr1_4:53634370-53634389 | Msa0170060:intron | 40.0% | |
| TCAATATGGTATCACCAGCA+AGG | + | chr1_4:53634555-53634574 | None:intergenic | 40.0% | |
| TGTGAAGACTATTCTGTCCT+AGG | + | chr1_4:53634948-53634967 | None:intergenic | 40.0% | |
| TAGTCTTCACACATTTGGGA+TGG | - | chr1_4:53634957-53634976 | Msa0170060:five_prime_UTR | 40.0% | |
| CTGACAAAGTCAACCATGCT+TGG | - | chr1_4:53630975-53630994 | Msa0170060:three_prime_UTR | 45.0% | |
| GAGGATGAAGCTTAAGCTGA+AGG | + | chr1_4:53631012-53631031 | None:intergenic | 45.0% | |
| !! | GCACCGATACTTTTGATTGG+AGG | + | chr1_4:53631409-53631428 | None:intergenic | 45.0% |
| CTATATGGTTTCGCCTATGC+AGG | - | chr1_4:53631595-53631614 | Msa0170060:intron | 45.0% | |
| ! | CTGTTTTCTTGGTAGAGAGG+TGG | + | chr1_4:53632079-53632098 | None:intergenic | 45.0% |
| ! | GCACCGAAATTTGGGATAGA+AGG | + | chr1_4:53632328-53632347 | None:intergenic | 45.0% |
| TCCTTATATTGCTCTCCTCC+GGG | + | chr1_4:53632545-53632564 | None:intergenic | 45.0% | |
| !! | AGTTTTGGCCTATCGTTGGT+TGG | - | chr1_4:53633142-53633161 | Msa0170060:intron | 45.0% |
| !! | GTTTTGGCCTATCGTTGGTT+GGG | - | chr1_4:53633143-53633162 | Msa0170060:intron | 45.0% |
| ! | GGAACTGCAAAGGCATATAC+TGG | + | chr1_4:53633176-53633195 | None:intergenic | 45.0% |
| !! | ACAGCTTTGTTGGTTCATGC+TGG | - | chr1_4:53633208-53633227 | Msa0170060:intron | 45.0% |
| GACAGCCAAAGCAATCTTAG+TGG | + | chr1_4:53633512-53633531 | None:intergenic | 45.0% | |
| GTAGACCCTGGTATAAGAGA+TGG | - | chr1_4:53634331-53634350 | Msa0170060:intron | 45.0% | |
| TGCCTCCATCTCTTATACCA+GGG | + | chr1_4:53634339-53634358 | None:intergenic | 45.0% | |
| TTGCCTCCATCTCTTATACC+AGG | + | chr1_4:53634340-53634359 | None:intergenic | 45.0% | |
| AATGCCAGTGCAAGAAACAG+TGG | - | chr1_4:53634358-53634377 | Msa0170060:intron | 45.0% | |
| GTGCGTGTGAACACATGATT+GGG | - | chr1_4:53634458-53634477 | Msa0170060:intron | 45.0% | |
| GAGCGGTATCTCCAAATCTA+TGG | + | chr1_4:53634509-53634528 | None:intergenic | 45.0% | |
| ! | GAAGTTTTCACCATCAGGAG+CGG | + | chr1_4:53634526-53634545 | None:intergenic | 45.0% |
| AGTTGCTATCAAGAAGGCCT+AGG | - | chr1_4:53634928-53634947 | Msa0170060:exon | 45.0% | |
| !! | AAAAAAAAAAAAACAAAAAT+GGG | + | chr1_4:53634996-53635015 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAACAAAAA+TGG | + | chr1_4:53634997-53635016 | None:intergenic | 5.0% |
| ! | CAATAGCGGAGACAGACCAA+AGG | - | chr1_4:53630935-53630954 | Msa0170060:three_prime_UTR | 50.0% |
| GCTTCATCCTCTCAGAACCA+AGG | - | chr1_4:53631021-53631040 | Msa0170060:intron | 50.0% | |
| GCTGTTGCACAGAAGCTTTC+TGG | - | chr1_4:53631171-53631190 | Msa0170060:intron | 50.0% | |
| GCGAACATCAGACACGACAA+TGG | - | chr1_4:53631301-53631320 | Msa0170060:intron | 50.0% | |
| !! | TTTGGTGCTCGACACGACAA+TGG | + | chr1_4:53631382-53631401 | None:intergenic | 50.0% |
| ATGTCCAAAGGGTCCTGCAT+AGG | + | chr1_4:53631611-53631630 | None:intergenic | 50.0% | |
| !! | GGTGGGTTACACAACACAAG+AGG | + | chr1_4:53632061-53632080 | None:intergenic | 50.0% |
| TCCCGGAGGAGAGCAATATA+AGG | - | chr1_4:53632541-53632560 | Msa0170060:intron | 50.0% | |
| !! | AAAGCGTGAGGTTGGTTTGC+AGG | - | chr1_4:53632954-53632973 | Msa0170060:intron | 50.0% |
| !! | GTTGGTTTGCAGGAAGACCT+TGG | - | chr1_4:53632964-53632983 | Msa0170060:intron | 50.0% |
| CTACCCTACTGTCCAGTTGA+CGG | - | chr1_4:53633016-53633035 | Msa0170060:intron | 50.0% | |
| ATGCCGTCAACTGGACAGTA+GGG | + | chr1_4:53633022-53633041 | None:intergenic | 50.0% | |
| ATACCTTCCATGCCGTCAAC+TGG | + | chr1_4:53633031-53633050 | None:intergenic | 50.0% | |
| !! | GTGCAGTTTTGGCCTATCGT+TGG | - | chr1_4:53633138-53633157 | Msa0170060:intron | 50.0% |
| TGCACCATAAGGTGGTTACC+TGG | - | chr1_4:53633624-53633643 | Msa0170060:intron | 50.0% | |
| CACCCGATGGTGACTTATGT+TGG | + | chr1_4:53633979-53633998 | None:intergenic | 50.0% | |
| TTTCCCACTGGCGATCATTG+AGG | + | chr1_4:53634135-53634154 | None:intergenic | 50.0% | |
| GACCCTGGTATAAGAGATGG+AGG | - | chr1_4:53634334-53634353 | Msa0170060:intron | 50.0% | |
| CGCGCATGAAGCCATATTTC+TGG | + | chr1_4:53634384-53634403 | None:intergenic | 50.0% | |
| GGTGCGTGTGAACACATGAT+TGG | - | chr1_4:53634457-53634476 | Msa0170060:intron | 50.0% | |
| TTTGGAGATACCGCTCCTGA+TGG | - | chr1_4:53634513-53634532 | Msa0170060:intron | 50.0% | |
| TTCGCCTATGCAGGACCCTT+TGG | - | chr1_4:53631604-53631623 | Msa0170060:intron | 55.0% | |
| CATGCCGTCAACTGGACAGT+AGG | + | chr1_4:53633023-53633042 | None:intergenic | 55.0% | |
| CTACTGTCCAGTTGACGGCA+TGG | - | chr1_4:53633021-53633040 | Msa0170060:intron | 55.0% | |
| TGTCCAGTTGACGGCATGGA+AGG | - | chr1_4:53633025-53633044 | Msa0170060:intron | 55.0% | |
| CACCATCGGGTGATTGTCGA+CGG | - | chr1_4:53633987-53634006 | Msa0170060:intron | 55.0% | |
| TACCGTCGACAATCACCCGA+TGG | + | chr1_4:53633992-53634011 | None:intergenic | 55.0% | |
| ACCACCTCAATGATCGCCAG+TGG | - | chr1_4:53634128-53634147 | Msa0170060:intron | 55.0% | |
| CCACCTCAATGATCGCCAGT+GGG | - | chr1_4:53634129-53634148 | Msa0170060:intron | 55.0% | |
| GGTAAACTGAGGGTAGACCC+TGG | - | chr1_4:53634319-53634338 | Msa0170060:intron | 55.0% | |
| ! | CTGGCCACTGTTTCTTGCAC+TGG | + | chr1_4:53634365-53634384 | None:intergenic | 55.0% |
| GCGATGACGTGCAACTGCTA+GGG | - | chr1_4:53634401-53634420 | Msa0170060:intron | 55.0% | |
| CCCACTGGCGATCATTGAGG+TGG | + | chr1_4:53634132-53634151 | None:intergenic | 60.0% | |
| CGCGATGACGTGCAACTGCT+AGG | - | chr1_4:53634400-53634419 | Msa0170060:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 53630862 | 53635053 | 53630862 | ID=Msa0170060;Name=Msa0170060 |
| chr1_4 | mRNA | 53630862 | 53635053 | 53630862 | ID=Msa0170060-mRNA-1;Parent=Msa0170060;Name=Msa0170060-mRNA-1;_AED=0.06;_eAED=0.06;_QI=109|0.85|0.87|1|0.57|0.62|8|404|65 |
| chr1_4 | exon | 53630862 | 53630887 | 53630862 | ID=Msa0170060-mRNA-1:exon:15991;Parent=Msa0170060-mRNA-1 |
| chr1_4 | exon | 53630929 | 53631023 | 53630929 | ID=Msa0170060-mRNA-1:exon:15990;Parent=Msa0170060-mRNA-1 |
| chr1_4 | exon | 53632686 | 53632771 | 53632686 | ID=Msa0170060-mRNA-1:exon:15989;Parent=Msa0170060-mRNA-1 |
| chr1_4 | exon | 53632869 | 53632939 | 53632869 | ID=Msa0170060-mRNA-1:exon:15988;Parent=Msa0170060-mRNA-1 |
| chr1_4 | exon | 53633994 | 53634069 | 53633994 | ID=Msa0170060-mRNA-1:exon:15987;Parent=Msa0170060-mRNA-1 |
| chr1_4 | exon | 53634219 | 53634320 | 53634219 | ID=Msa0170060-mRNA-1:exon:15986;Parent=Msa0170060-mRNA-1 |
| chr1_4 | exon | 53634707 | 53634780 | 53634707 | ID=Msa0170060-mRNA-1:exon:15985;Parent=Msa0170060-mRNA-1 |
| chr1_4 | exon | 53634873 | 53635053 | 53634873 | ID=Msa0170060-mRNA-1:exon:15984;Parent=Msa0170060-mRNA-1 |
| chr1_4 | five_prime_UTR | 53634945 | 53635053 | 53634945 | ID=Msa0170060-mRNA-1:five_prime_utr;Parent=Msa0170060-mRNA-1 |
| chr1_4 | CDS | 53634873 | 53634944 | 53634873 | ID=Msa0170060-mRNA-1:cds;Parent=Msa0170060-mRNA-1 |
| chr1_4 | CDS | 53634707 | 53634780 | 53634707 | ID=Msa0170060-mRNA-1:cds;Parent=Msa0170060-mRNA-1 |
| chr1_4 | CDS | 53634269 | 53634320 | 53634269 | ID=Msa0170060-mRNA-1:cds;Parent=Msa0170060-mRNA-1 |
| chr1_4 | three_prime_UTR | 53634219 | 53634268 | 53634219 | ID=Msa0170060-mRNA-1:three_prime_utr;Parent=Msa0170060-mRNA-1 |
| chr1_4 | three_prime_UTR | 53633994 | 53634069 | 53633994 | ID=Msa0170060-mRNA-1:three_prime_utr;Parent=Msa0170060-mRNA-1 |
| chr1_4 | three_prime_UTR | 53632869 | 53632939 | 53632869 | ID=Msa0170060-mRNA-1:three_prime_utr;Parent=Msa0170060-mRNA-1 |
| chr1_4 | three_prime_UTR | 53632686 | 53632771 | 53632686 | ID=Msa0170060-mRNA-1:three_prime_utr;Parent=Msa0170060-mRNA-1 |
| chr1_4 | three_prime_UTR | 53630929 | 53631023 | 53630929 | ID=Msa0170060-mRNA-1:three_prime_utr;Parent=Msa0170060-mRNA-1 |
| chr1_4 | three_prime_UTR | 53630862 | 53630887 | 53630862 | ID=Msa0170060-mRNA-1:three_prime_utr;Parent=Msa0170060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
