Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077430 | XP_003590816.1 | 93.583 | 187 | 12 | 0 | 1 | 187 | 1 | 187 | 2.19e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077430 | sp|Q9ZS51|PMP22_ARATH | 58.427 | 178 | 74 | 0 | 10 | 187 | 12 | 189 | 2.43e-77 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077430 | G7I4T1 | 93.583 | 187 | 12 | 0 | 1 | 187 | 1 | 187 | 1.05e-126 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030050 | Msa0077430 | 0.844162 | 8.970025e-59 | -8.615850e-47 |
| Msa0077430 | Msa0125260 | 0.831263 | 1.843421e-55 | -8.615850e-47 |
| Msa0077430 | Msa0170060 | 0.847153 | 1.384788e-59 | -8.615850e-47 |
| Msa0077430 | Msa0345050 | 0.801315 | 9.541604e-49 | -8.615850e-47 |
| Msa0077430 | Msa0389080 | -0.814547 | 1.457142e-51 | -8.615850e-47 |
| Msa0077430 | Msa0402800 | 0.806409 | 8.340520e-50 | -8.615850e-47 |
| Msa0077430 | Msa0497860 | 0.806593 | 7.630721e-50 | -8.615850e-47 |
| Msa0077430 | Msa0682160 | 0.800822 | 1.203696e-48 | -8.615850e-47 |
| Msa0077430 | Msa0712880 | 0.804847 | 1.774411e-49 | -8.615850e-47 |
| Msa0077430 | Msa0816630 | 0.800568 | 1.355704e-48 | -8.615850e-47 |
| Msa0077430 | Msa0975960 | 0.810415 | 1.166087e-50 | -8.615850e-47 |
| Msa0077430 | Msa1121720 | -0.802636 | 5.105658e-49 | -8.615850e-47 |
| Msa0077430 | Msa1131430 | 0.805022 | 1.631611e-49 | -8.615850e-47 |
| Msa0077430 | Msa1202470 | 0.815497 | 8.969906e-52 | -8.615850e-47 |
| Msa0077430 | Msa1254910 | 0.819876 | 9.223645e-53 | -8.615850e-47 |
| Msa0077430 | Msa1273620 | -0.812817 | 3.502508e-51 | -8.615850e-47 |
| Msa0077430 | Msa1356100 | -0.801729 | 7.848691e-49 | -8.615850e-47 |
| Msa0077430 | Msa1413150 | 0.806786 | 6.944434e-50 | -8.615850e-47 |
| Msa0077430 | Msa1429470 | 0.804996 | 1.651980e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077430 | MtrunA17_Chr1g0187331 | 93.583 | 187 | 12 | 0 | 1 | 187 | 1 | 187 | 2.02e-130 | 363 |
| Msa0077430 | MtrunA17_Chr2g0288811 | 56.831 | 183 | 79 | 0 | 1 | 183 | 1 | 183 | 1.54e-75 | 224 |
| Msa0077430 | MtrunA17_Chr8g0390511 | 26.699 | 206 | 123 | 4 | 8 | 186 | 7 | 211 | 1.14e-15 | 72.4 |
| Msa0077430 | MtrunA17_Chr2g0318131 | 29.570 | 186 | 119 | 6 | 9 | 185 | 177 | 359 | 1.33e-14 | 70.9 |
| Msa0077430 | MtrunA17_Chr6g0465041 | 24.713 | 174 | 127 | 3 | 12 | 183 | 56 | 227 | 3.39e-14 | 68.2 |
| Msa0077430 | MtrunA17_Chr7g0255351 | 28.402 | 169 | 115 | 5 | 12 | 178 | 90 | 254 | 4.47e-14 | 68.6 |
| Msa0077430 | MtrunA17_Chr1g0147191 | 26.316 | 190 | 115 | 5 | 9 | 174 | 5 | 193 | 6.27e-13 | 64.7 |
| Msa0077430 | MtrunA17_Chr2g0324001 | 26.667 | 180 | 128 | 3 | 9 | 186 | 123 | 300 | 3.56e-11 | 60.8 |
| Msa0077430 | MtrunA17_Chr1g0207521 | 23.810 | 168 | 124 | 2 | 12 | 177 | 85 | 250 | 7.20e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077430 | AT4G14305.1 | 75.824 | 182 | 44 | 0 | 1 | 182 | 1 | 182 | 5.27e-107 | 304 |
| Msa0077430 | AT4G14305.2 | 75.641 | 156 | 38 | 0 | 27 | 182 | 15 | 170 | 2.50e-90 | 262 |
| Msa0077430 | AT4G04470.1 | 58.427 | 178 | 74 | 0 | 10 | 187 | 12 | 189 | 2.47e-78 | 232 |
| Msa0077430 | AT4G04470.2 | 58.427 | 178 | 74 | 0 | 10 | 187 | 12 | 189 | 2.47e-78 | 232 |
| Msa0077430 | AT5G43140.1 | 26.163 | 172 | 121 | 5 | 12 | 180 | 82 | 250 | 5.81e-13 | 65.5 |
| Msa0077430 | AT5G19750.1 | 24.855 | 173 | 126 | 4 | 12 | 183 | 118 | 287 | 1.01e-12 | 65.5 |
Find 42 sgRNAs with CRISPR-Local
Find 730 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTTGCACAGAAGCTTTC+TGG | 0.182029 | 1_2:-54343100 | Msa0077430:CDS |
| AAAGTTTATCCATCAATAAA+TGG | 0.290399 | 1_2:+54342720 | None:intergenic |
| CAGAATAGTCTTCACACATT+TGG | 0.312204 | 1_2:-54334405 | Msa0077430:three_prime_UTR |
| AGAATAGTCTTCACACATTT+GGG | 0.361638 | 1_2:-54334404 | Msa0077430:three_prime_UTR |
| ACATTATCTCCATTTATTGA+TGG | 0.376713 | 1_2:-54342729 | Msa0077430:CDS |
| TTCGCCTATGCAGGACCCTT+TGG | 0.383790 | 1_2:-54342752 | Msa0077430:CDS |
| TATAATAAACAATATAAAAC+TGG | 0.387599 | 1_2:+54343401 | None:intergenic |
| TATTATGGCTTGATTATTGA+AGG | 0.419845 | 1_2:-54342454 | Msa0077430:intron |
| CAATGAAACTGTTGCTAAGA+AGG | 0.429878 | 1_2:-54342681 | Msa0077430:intron |
| TGTGAAGACTATTCTGTCCT+AGG | 0.466264 | 1_2:+54334412 | None:intergenic |
| ATTACTTCATCAGTTCTAGC+TGG | 0.466658 | 1_2:-54343133 | Msa0077430:CDS |
| CTACCCTACTGTTCAGTTGA+CGG | 0.475476 | 1_2:-54341341 | Msa0077430:CDS |
| GGAACTGCAAAGGCATATAC+TGG | 0.477910 | 1_2:+54341183 | None:intergenic |
| CTATATGGTTTCGCCTATGC+AGG | 0.488768 | 1_2:-54342761 | Msa0077430:CDS |
| CTGACAAAGTCAACGATGCT+TGG | 0.498624 | 1_2:-54343296 | Msa0077430:CDS |
| ACAGCTTTGTTGGTTCATGC+TGG | 0.506633 | 1_2:-54341148 | Msa0077430:intron |
| GTTGGTTTGCAGGAAGACCT+TGG | 0.511703 | 1_2:-54341393 | Msa0077430:intron |
| AAATGGAGATAATGTCCAAA+GGG | 0.531298 | 1_2:+54342737 | None:intergenic |
| AGCAAATAACTAGTTCTCCA+TGG | 0.534969 | 1_2:-54342498 | Msa0077430:CDS |
| CTAAGAAGCTTCAGTTCAGA+AGG | 0.536401 | 1_2:-54343075 | Msa0077430:CDS |
| GAGAACTAGTTATTTGCTCA+AGG | 0.536726 | 1_2:+54342503 | None:intergenic |
| TGTTCAGTTGACGGCGTGGA+AGG | 0.546675 | 1_2:-54341332 | Msa0077430:intron |
| AGTTGCTATCAAGAAGGCCT+AGG | 0.548195 | 1_2:-54334429 | Msa0077430:exon |
| TAGTCTTCACACATTTGGGA+TGG | 0.559951 | 1_2:-54334400 | Msa0077430:three_prime_UTR |
| ATCGTTGACTTTGTCAGACA+TGG | 0.560188 | 1_2:+54343302 | None:intergenic |
| CACGCCGTCAACTGAACAGT+AGG | 0.562833 | 1_2:+54341337 | None:intergenic |
| GAGGATGAAGCTTAAGCTGA+AGG | 0.563374 | 1_2:+54343262 | None:intergenic |
| TTGTTCATGACTATATTCCA+AGG | 0.574186 | 1_2:+54341376 | None:intergenic |
| ACATGGTGATTGATCAACCT+TGG | 0.575858 | 1_2:+54343319 | None:intergenic |
| ATGTCCAAAGGGTCCTGCAT+AGG | 0.576071 | 1_2:+54342748 | None:intergenic |
| TCTTTCTGAATCTGAAAGCA+AGG | 0.580113 | 1_2:-54334460 | Msa0077430:CDS |
| ATCATCAGTTGCTATCAAGA+AGG | 0.586636 | 1_2:-54334435 | Msa0077430:CDS |
| GCTTCATCCTCTCAGAACCA+AGG | 0.597074 | 1_2:-54343250 | Msa0077430:intron |
| TAAATGGAGATAATGTCCAA+AGG | 0.616169 | 1_2:+54342736 | None:intergenic |
| TAATTCACCCAACCAACGAT+AGG | 0.618119 | 1_2:+54341206 | None:intergenic |
| AATAAAACACGGAACTGCAA+AGG | 0.621872 | 1_2:+54341173 | None:intergenic |
| CTACTGTTCAGTTGACGGCG+TGG | 0.655022 | 1_2:-54341336 | Msa0077430:CDS |
| AATGAAACCTTGGTTCTGAG+AGG | 0.655224 | 1_2:+54343243 | None:intergenic |
| ACGCCGTCAACTGAACAGTA+GGG | 0.658501 | 1_2:+54341338 | None:intergenic |
| CAAAGCTGTGAAATAAAACA+CGG | 0.671747 | 1_2:+54341162 | None:intergenic |
| ACAATAGCGGAGACAGACCA+AGG | 0.699114 | 1_2:-54343336 | Msa0077430:five_prime_UTR |
| CCGCAACAAGAAAACAATAG+CGG | 0.709181 | 1_2:-54343349 | Msa0077430:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAAACAATATAAAAC+TGG | + | chr1_2:54334377-54334396 | None:intergenic | 10.0% |
| !!! | TTTTGTATTTAAATTAGTTA+GGG | + | chr1_2:54341284-54341303 | None:intergenic | 10.0% |
| !!! | TTTTGTATTTAAATTAGTTA+GGG | - | chr1_2:54341284-54341303 | Msa0077430:intron | 10.0% |
| !! | CAATTAATACTAAATATTAG+AGG | + | chr1_2:54335533-54335552 | None:intergenic | 15.0% |
| !! | TAATGATTATTGTAAACTTA+GGG | + | chr1_2:54335670-54335689 | None:intergenic | 15.0% |
| !! | ATAATGATTATTGTAAACTT+AGG | + | chr1_2:54335671-54335690 | None:intergenic | 15.0% |
| !! | GAAAACATTTATAGAATAAA+AGG | - | chr1_2:54335825-54335844 | Msa0077430:intron | 15.0% |
| !! | ATGATTAAGATATTATCAAT+AGG | + | chr1_2:54336279-54336298 | None:intergenic | 15.0% |
| !!! | CTGTTTTTTTTTTTAATTCT+CGG | - | chr1_2:54337541-54337560 | Msa0077430:intron | 15.0% |
| !!! | TGTTTTTTTTTTTAATTCTC+GGG | - | chr1_2:54337542-54337561 | Msa0077430:intron | 15.0% |
| !! | GAAAAAAAAATCTTTATTAC+CGG | + | chr1_2:54337874-54337893 | None:intergenic | 15.0% |
| !! | AATAAAAGTGACAAAATATT+TGG | + | chr1_2:54338436-54338455 | None:intergenic | 15.0% |
| !!! | ATTAAAAATGCTTTTTTACA+TGG | - | chr1_2:54339828-54339847 | Msa0077430:intron | 15.0% |
| !!! | AGTGTTGATATATAAATATA+TGG | - | chr1_2:54341044-54341063 | Msa0077430:intron | 15.0% |
| !! | TTTGTATTTAAATTAGTTAG+GGG | + | chr1_2:54341285-54341304 | None:intergenic | 15.0% |
| !!! | GTTTTGTATTTAAATTAGTT+AGG | + | chr1_2:54341283-54341302 | None:intergenic | 15.0% |
| !!! | GTTTTGTATTTAAATTAGTT+AGG | - | chr1_2:54341283-54341302 | Msa0077430:intron | 15.0% |
| !! | TTTGTATTTAAATTAGTTAG+GGG | - | chr1_2:54341285-54341304 | Msa0077430:intron | 15.0% |
| !! | TAATGTCATATTTCTTATAA+AGG | - | chr1_2:54341637-54341656 | Msa0077430:intron | 15.0% |
| !! | AAAATAGTAAAATGAAACCT+TGG | + | chr1_2:54334545-54334564 | None:intergenic | 20.0% |
| !! | AAAGTTTATCCATCAATAAA+TGG | + | chr1_2:54335058-54335077 | None:intergenic | 20.0% |
| !! | GAATGAAATATCATATTACT+AGG | - | chr1_2:54335245-54335264 | Msa0077430:intron | 20.0% |
| !!! | TTTTTGTTCATGATGTATTA+TGG | - | chr1_2:54335306-54335325 | Msa0077430:intron | 20.0% |
| !!! | ACATTGATAATTTTGAACTT+CGG | + | chr1_2:54335629-54335648 | None:intergenic | 20.0% |
| !! | AATTTAAGAAAGTAAGGATT+TGG | + | chr1_2:54335904-54335923 | None:intergenic | 20.0% |
| !! | TTAACATTGAATTTAATTCC+CGG | - | chr1_2:54335942-54335961 | Msa0077430:intron | 20.0% |
| !! | TTAAGATATTATCAATAGGT+TGG | + | chr1_2:54336275-54336294 | None:intergenic | 20.0% |
| !!! | CAATTTGAATAGTTAGTTTT+TGG | - | chr1_2:54336507-54336526 | Msa0077430:intron | 20.0% |
| !!! | ACAATGCTTAATCATTATTT+TGG | + | chr1_2:54336727-54336746 | None:intergenic | 20.0% |
| !!! | GATCTTTTCTTTATTGAATA+AGG | - | chr1_2:54337518-54337537 | Msa0077430:intron | 20.0% |
| !! | CTGAGAGAAATTAAATTAAA+TGG | + | chr1_2:54338033-54338052 | None:intergenic | 20.0% |
| !!! | AGGACATAAAATTTTGAAAT+TGG | + | chr1_2:54338611-54338630 | None:intergenic | 20.0% |
| !! | ATGATAAAAAACAGAATGAT+CGG | + | chr1_2:54340030-54340049 | None:intergenic | 20.0% |
| !! | CATTTATCTTATTGTTTATG+TGG | - | chr1_2:54340066-54340085 | Msa0077430:intron | 20.0% |
| !! | TTGTATTTAAATTAGTTAGG+GGG | + | chr1_2:54341286-54341305 | None:intergenic | 20.0% |
| !! | AAAAATAAAAAAATGACACG+TGG | + | chr1_2:54341212-54341231 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTTTTTTGGCCT+TGG | - | chr1_2:54341222-54341241 | Msa0077430:intron | 20.0% |
| !!! | TTTATTTTTTTTTTGGCCTT+GGG | - | chr1_2:54341223-54341242 | Msa0077430:intron | 20.0% |
| !! | TTGTATTTAAATTAGTTAGG+GGG | - | chr1_2:54341286-54341305 | Msa0077430:intron | 20.0% |
| !!! | TAATGTTGATCCTTTTATAT+TGG | - | chr1_2:54341681-54341700 | Msa0077430:intron | 20.0% |
| !!! | AATGTTGATCCTTTTATATT+GGG | - | chr1_2:54341682-54341701 | Msa0077430:intron | 20.0% |
| !!! | TCACAATTTTTACTTAATCA+AGG | + | chr1_2:54341789-54341808 | None:intergenic | 20.0% |
| !! | GCAATTAAAATTCAAATTGA+GGG | + | chr1_2:54341849-54341868 | None:intergenic | 20.0% |
| !! | TGCAATTAAAATTCAAATTG+AGG | + | chr1_2:54341850-54341869 | None:intergenic | 20.0% |
| !!! | GAATATTATTTTGAGTATGA+TGG | + | chr1_2:54341928-54341947 | None:intergenic | 20.0% |
| !!! | TGTATCTAGTTTCAATATTT+TGG | - | chr1_2:54342072-54342091 | Msa0077430:intron | 20.0% |
| !! | TGTGAAAATGCATTATTATA+GGG | + | chr1_2:54342135-54342154 | None:intergenic | 20.0% |
| !! | ATGTGAAAATGCATTATTAT+AGG | + | chr1_2:54342136-54342155 | None:intergenic | 20.0% |
| !! | TTTCTAAATTATATCACACT+AGG | - | chr1_2:54343009-54343028 | Msa0077430:intron | 20.0% |
| !! | CACTAGGATATATTTATAAT+AGG | - | chr1_2:54343025-54343044 | Msa0077430:intron | 20.0% |
| !!! | TTTTCATACAGAAAAAAGTT+TGG | + | chr1_2:54343152-54343171 | None:intergenic | 20.0% |
| !! | ATGAATTATTTAGCTGTTAA+TGG | - | chr1_2:54343261-54343280 | Msa0077430:CDS | 20.0% |
| ! | GATGAAGTAGAAGTTATTAT+AGG | - | chr1_2:54334929-54334948 | Msa0077430:intron | 25.0% |
| !!! | GAAGTTATTATAGGTTGATT+TGG | - | chr1_2:54334938-54334957 | Msa0077430:intron | 25.0% |
| !!! | CAAATTATTTTGCAGCTATA+TGG | - | chr1_2:54334999-54335018 | Msa0077430:intron | 25.0% |
| ! | ACATTATCTCCATTTATTGA+TGG | - | chr1_2:54335046-54335065 | Msa0077430:intron | 25.0% |
| !!! | ATTGATGGATAAACTTTTCA+AGG | - | chr1_2:54335061-54335080 | Msa0077430:intron | 25.0% |
| !!! | TTGATGGATAAACTTTTCAA+GGG | - | chr1_2:54335062-54335081 | Msa0077430:intron | 25.0% |
| !! | TTTTCATAAAACAAGTACCA+GGG | + | chr1_2:54335217-54335236 | None:intergenic | 25.0% |
| !! | TTTTTCATAAAACAAGTACC+AGG | + | chr1_2:54335218-54335237 | None:intergenic | 25.0% |
| ! | TATTATGGCTTGATTATTGA+AGG | - | chr1_2:54335321-54335340 | Msa0077430:intron | 25.0% |
| ! | TCATTATTTACACGTCAATA+TGG | - | chr1_2:54335684-54335703 | Msa0077430:intron | 25.0% |
| ! | TTGTTCACAATCTCATATTA+AGG | + | chr1_2:54335798-54335817 | None:intergenic | 25.0% |
| ! | TTACCTTACAAGTATATGAA+GGG | - | chr1_2:54335870-54335889 | Msa0077430:intron | 25.0% |
| ! | CAGAACAATTTAAGAAAGTA+AGG | + | chr1_2:54335910-54335929 | None:intergenic | 25.0% |
| !! | TAGATGAAGTTTAAGCTTTT+TGG | - | chr1_2:54336192-54336211 | Msa0077430:intron | 25.0% |
| ! | AACTATTCAAATTGTTCCAT+TGG | + | chr1_2:54336501-54336520 | None:intergenic | 25.0% |
| !!! | TTGAATAGTTAGTTTTTGGA+AGG | - | chr1_2:54336511-54336530 | Msa0077430:intron | 25.0% |
| ! | CTGTAAATATATCATAGCTT+AGG | - | chr1_2:54336848-54336867 | Msa0077430:intron | 25.0% |
| ! | TATATAGAAGTAAGTAGCTT+GGG | + | chr1_2:54336875-54336894 | None:intergenic | 25.0% |
| ! | TTATATAGAAGTAAGTAGCT+TGG | + | chr1_2:54336876-54336895 | None:intergenic | 25.0% |
| !!! | AGAATTTGTTACAGCAATAA+AGG | + | chr1_2:54337087-54337106 | None:intergenic | 25.0% |
| ! | TTTATTGCTGTAACAAATTC+TGG | - | chr1_2:54337086-54337105 | Msa0077430:intron | 25.0% |
| !!! | TTGTTTTTAGTTTTGATCCA+CGG | - | chr1_2:54337405-54337424 | Msa0077430:intron | 25.0% |
| ! | AATAAAGAAAAGATCACAAG+CGG | + | chr1_2:54337513-54337532 | None:intergenic | 25.0% |
| ! | GTTACAACTAAATGATTTAC+CGG | + | chr1_2:54337793-54337812 | None:intergenic | 25.0% |
| ! | TTAAATTAAATGGAGATCCA+GGG | + | chr1_2:54338023-54338042 | None:intergenic | 25.0% |
| ! | ATTAAATTAAATGGAGATCC+AGG | + | chr1_2:54338024-54338043 | None:intergenic | 25.0% |
| ! | ATGGGTTTAAGAGATAATAA+AGG | + | chr1_2:54338164-54338183 | None:intergenic | 25.0% |
| !! | AAAATATTTGGAATCAAGAG+TGG | + | chr1_2:54338424-54338443 | None:intergenic | 25.0% |
| ! | CAAGAAGTTAAAACTCAATT+TGG | - | chr1_2:54338534-54338553 | Msa0077430:intron | 25.0% |
| !!! | CATTTTTAATGTCAAGTTGA+TGG | + | chr1_2:54339818-54339837 | None:intergenic | 25.0% |
| !! | TCTTGAAGAAGAAGTATATA+TGG | - | chr1_2:54339854-54339873 | Msa0077430:intron | 25.0% |
| !! | AGATTGTTTAAGACCATAAA+GGG | + | chr1_2:54339943-54339962 | None:intergenic | 25.0% |
| !!! | TAGAAAGATGTTGTTTTAAC+TGG | + | chr1_2:54340132-54340151 | None:intergenic | 25.0% |
| ! | ATGGTATTGTAATTTCACAA+AGG | - | chr1_2:54340221-54340240 | Msa0077430:intron | 25.0% |
| ! | TTAGGTAAAAGTTTGACATT+TGG | + | chr1_2:54340316-54340335 | None:intergenic | 25.0% |
| ! | CGAATTCTTAAATACATCAA+AGG | - | chr1_2:54340490-54340509 | Msa0077430:intron | 25.0% |
| ! | CCACATATATAACTTATTCT+AGG | + | chr1_2:54340982-54341001 | None:intergenic | 25.0% |
| ! | CCTAGAATAAGTTATATATG+TGG | - | chr1_2:54340979-54340998 | Msa0077430:intron | 25.0% |
| !!! | TTATTTTTTTTTTGGCCTTG+GGG | - | chr1_2:54341224-54341243 | Msa0077430:intron | 25.0% |
| ! | CTGTAAATATATCATAGCTT+AGG | - | chr1_2:54336848-54336867 | Msa0077430:intron | 25.0% |
| ! | TATATAGAAGTAAGTAGCTT+GGG | + | chr1_2:54336875-54336894 | None:intergenic | 25.0% |
| ! | TTATATAGAAGTAAGTAGCT+TGG | + | chr1_2:54336876-54336895 | None:intergenic | 25.0% |
| ! | CATGCACTATAAATTACAAA+AGG | - | chr1_2:54341604-54341623 | Msa0077430:intron | 25.0% |
| !!! | TGAATTTTAATTGCACCATA+AGG | - | chr1_2:54341855-54341874 | Msa0077430:intron | 25.0% |
| !!! | ATCTAGTTTCAATATTTTGG+AGG | - | chr1_2:54342075-54342094 | Msa0077430:intron | 25.0% |
| ! | ACAGATAAATCATATTAGTC+GGG | + | chr1_2:54342260-54342279 | None:intergenic | 25.0% |
| ! | CACAGATAAATCATATTAGT+CGG | + | chr1_2:54342261-54342280 | None:intergenic | 25.0% |
| ! | CTATAAGAATGATTGTTAGT+AGG | - | chr1_2:54342292-54342311 | Msa0077430:intron | 25.0% |
| ! | CAATCATATATTCATACTAG+TGG | + | chr1_2:54342329-54342348 | None:intergenic | 25.0% |
| ! | TTGTAAAATAGATGCATAAG+TGG | - | chr1_2:54342863-54342882 | Msa0077430:intron | 25.0% |
| ! | TAATTGATATTGTGCAGTTA+AGG | - | chr1_2:54343102-54343121 | Msa0077430:CDS | 25.0% |
| ! | AGAAAAAAGTTTGGTAGAAT+TGG | + | chr1_2:54343143-54343162 | None:intergenic | 25.0% |
| !! | TGTGTGTGTTTTGTTATGTT+AGG | - | chr1_2:54334617-54334636 | Msa0077430:intron | 30.0% |
| !! | GTTATTATAGGTTGATTTGG+TGG | - | chr1_2:54334941-54334960 | Msa0077430:intron | 30.0% |
| AAATGGAGATAATGTCCAAA+GGG | + | chr1_2:54335041-54335060 | None:intergenic | 30.0% | |
| TAAATGGAGATAATGTCCAA+AGG | + | chr1_2:54335042-54335061 | None:intergenic | 30.0% | |
| !! | TGATGGATAAACTTTTCAAG+GGG | - | chr1_2:54335063-54335082 | Msa0077430:intron | 30.0% |
| TACTATGTCCTTTGGTTATA+GGG | - | chr1_2:54335144-54335163 | Msa0077430:intron | 30.0% | |
| CTATTTATCCCTATAACCAA+AGG | + | chr1_2:54335155-54335174 | None:intergenic | 30.0% | |
| ATGAACAAAAAGTTGTTCCA+TGG | + | chr1_2:54335297-54335316 | None:intergenic | 30.0% | |
| ! | GAATGTCAATTCTGTTTTCT+TGG | + | chr1_2:54335511-54335530 | None:intergenic | 30.0% |
| TTCTGCTTAATTCCTAACTT+TGG | - | chr1_2:54335561-54335580 | Msa0077430:intron | 30.0% | |
| ! | TTAATTCCTAACTTTGGTTC+TGG | - | chr1_2:54335567-54335586 | Msa0077430:intron | 30.0% |
| ! | AAAGTTTTGCACCGAAATTT+GGG | + | chr1_2:54335756-54335775 | None:intergenic | 30.0% |
| ! | AAAAGTTTTGCACCGAAATT+TGG | + | chr1_2:54335757-54335776 | None:intergenic | 30.0% |
| CTTACCTTACAAGTATATGA+AGG | - | chr1_2:54335869-54335888 | Msa0077430:intron | 30.0% | |
| AACCAAACTGAAATAGTGAA+GGG | - | chr1_2:54336081-54336100 | Msa0077430:intron | 30.0% | |
| TGCTTTGTAATTAAAGTGTG+AGG | - | chr1_2:54336360-54336379 | Msa0077430:intron | 30.0% | |
| TTGTAATTAAAGTGTGAGGT+TGG | - | chr1_2:54336364-54336383 | Msa0077430:intron | 30.0% | |
| TTGTTCATGACTATATTCCA+AGG | + | chr1_2:54336402-54336421 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGAACATGCAGTTT+TGG | - | chr1_2:54336546-54336565 | Msa0077430:intron | 30.0% |
| CAAAGCTGTGAAATAAAACA+CGG | + | chr1_2:54336616-54336635 | None:intergenic | 30.0% | |
| !!! | GTTTTATTTCACAGCTTTGT+TGG | - | chr1_2:54336617-54336636 | Msa0077430:intron | 30.0% |
| ATATAGAAGTAAGTAGCTTG+GGG | + | chr1_2:54336874-54336893 | None:intergenic | 30.0% | |
| ! | CTTTTCTCTCTTATTCAACA+TGG | - | chr1_2:54336947-54336966 | Msa0077430:intron | 30.0% |
| TTTGTTACAGCAATAAAGGA+GGG | + | chr1_2:54337083-54337102 | None:intergenic | 30.0% | |
| ! | ATTTGTTACAGCAATAAAGG+AGG | + | chr1_2:54337084-54337103 | None:intergenic | 30.0% |
| ! | TTATGAAGATTTTCTCCGAT+GGG | - | chr1_2:54337728-54337747 | Msa0077430:intron | 30.0% |
| ! | TTTGACGAAATTTTACCCAT+CGG | + | chr1_2:54337746-54337765 | None:intergenic | 30.0% |
| AGTAACATTGCCTTTAGTAA+AGG | + | chr1_2:54338088-54338107 | None:intergenic | 30.0% | |
| TTATCTCTTAAACCCATCAA+CGG | - | chr1_2:54338167-54338186 | Msa0077430:intron | 30.0% | |
| CGGATAATTTAGAAAGACTA+GGG | + | chr1_2:54338272-54338291 | None:intergenic | 30.0% | |
| TCGGATAATTTAGAAAGACT+AGG | + | chr1_2:54338273-54338292 | None:intergenic | 30.0% | |
| TTGGTGAGACAAATATTCTT+TGG | + | chr1_2:54338592-54338611 | None:intergenic | 30.0% | |
| ! | CAAAATTTTATGTCCTCCAA+TGG | - | chr1_2:54338615-54338634 | Msa0077430:intron | 30.0% |
| AGTTTGATGAAGAATACCAT+TGG | + | chr1_2:54338634-54338653 | None:intergenic | 30.0% | |
| !! | TAATGTTCCGTTTCGTTTTT+GGG | - | chr1_2:54338742-54338761 | Msa0077430:intron | 30.0% |
| ATACCTTTACGAATAGCAAT+AGG | + | chr1_2:54339378-54339397 | None:intergenic | 30.0% | |
| ATTTCTATTCCTAAATCTCC+AGG | - | chr1_2:54339492-54339511 | Msa0077430:intron | 30.0% | |
| ! | TGGTAAAGTTGATCGATTTA+AGG | - | chr1_2:54339665-54339684 | Msa0077430:intron | 30.0% |
| AAAAATCTGAGTATATCCCT+TGG | + | chr1_2:54339703-54339722 | None:intergenic | 30.0% | |
| ! | AAGGGATATACTCAGATTTT+TGG | - | chr1_2:54339702-54339721 | Msa0077430:intron | 30.0% |
| ! | AGGGATATACTCAGATTTTT+GGG | - | chr1_2:54339703-54339722 | Msa0077430:intron | 30.0% |
| !!! | CAGATTTTTGGGTTAGATTA+TGG | - | chr1_2:54339714-54339733 | Msa0077430:intron | 30.0% |
| ! | GAGATTGTTTAAGACCATAA+AGG | + | chr1_2:54339944-54339963 | None:intergenic | 30.0% |
| ! | TTTTTATCATCACTCATCCA+AGG | - | chr1_2:54340040-54340059 | Msa0077430:intron | 30.0% |
| ! | TTTTATCATCACTCATCCAA+GGG | - | chr1_2:54340041-54340060 | Msa0077430:intron | 30.0% |
| TTCTAATGAGTTTCAGACTA+AGG | - | chr1_2:54340147-54340166 | Msa0077430:intron | 30.0% | |
| TGAAATTACAATACCATCCT+TGG | + | chr1_2:54340218-54340237 | None:intergenic | 30.0% | |
| TTCACAAAGGAAATATGCTT+TGG | - | chr1_2:54340234-54340253 | Msa0077430:intron | 30.0% | |
| TTGGATATTCTTGAAGAAAC+AGG | - | chr1_2:54340253-54340272 | Msa0077430:intron | 30.0% | |
| ! | TGTCAAACTTTTACCTAATC+AGG | - | chr1_2:54340318-54340337 | Msa0077430:intron | 30.0% |
| ! | GTCAAACTTTTACCTAATCA+GGG | - | chr1_2:54340319-54340338 | Msa0077430:intron | 30.0% |
| ! | TCAAACTTTTACCTAATCAG+GGG | - | chr1_2:54340320-54340339 | Msa0077430:intron | 30.0% |
| TATCTTCCTGAATCTGATAA+AGG | + | chr1_2:54340349-54340368 | None:intergenic | 30.0% | |
| TATCAGATTCAGGAAGATAT+AGG | - | chr1_2:54340350-54340369 | Msa0077430:intron | 30.0% | |
| ! | TTAAAGCATTCATGTGTTCT+TGG | + | chr1_2:54340468-54340487 | None:intergenic | 30.0% |
| !! | ATTTTGTTTCTTACTCTTCC+AGG | + | chr1_2:54340656-54340675 | None:intergenic | 30.0% |
| TAGTAACATGTGAACTCATT+TGG | - | chr1_2:54340722-54340741 | Msa0077430:intron | 30.0% | |
| TTATCACATATAAGCGTCAT+TGG | + | chr1_2:54340790-54340809 | None:intergenic | 30.0% | |
| TGTCAATTCAAATGATCAAC+TGG | - | chr1_2:54340927-54340946 | Msa0077430:intron | 30.0% | |
| ! | ATATGGCTTAATTGCACTTT+TGG | - | chr1_2:54341061-54341080 | Msa0077430:intron | 30.0% |
| TGCCAAAGATTCAATACTTA+GGG | + | chr1_2:54341256-54341275 | None:intergenic | 30.0% | |
| ! | TATTGAATCTTTGGCAGTTT+TGG | - | chr1_2:54341152-54341171 | Msa0077430:CDS | 30.0% |
| !!! | TATTTTTTTTTTGGCCTTGG+GGG | - | chr1_2:54341225-54341244 | Msa0077430:intron | 30.0% |
| ! | TATTGAATCTTTGGCAGTTT+TGG | + | chr1_2:54341152-54341171 | None:intergenic | 30.0% |
| TGCCAAAGATTCAATACTTA+GGG | - | chr1_2:54341256-54341275 | Msa0077430:intron | 30.0% | |
| ! | TTTAGGCTTAATTGCACTTT+TGG | + | chr1_2:54341343-54341362 | None:intergenic | 30.0% |
| ATATAGAAGTAAGTAGCTTG+GGG | + | chr1_2:54336874-54336893 | None:intergenic | 30.0% | |
| TCTTATTCAACAAGCATCAT+TGG | - | chr1_2:54341555-54341574 | Msa0077430:intron | 30.0% | |
| ATCACAATATAGTTGAAAGC+CGG | + | chr1_2:54341709-54341728 | None:intergenic | 30.0% | |
| AAAATTGTGAAGATGCAATG+TGG | - | chr1_2:54341799-54341818 | Msa0077430:intron | 30.0% | |
| !!! | ATTTTAATTGCACCATAAGG+TGG | - | chr1_2:54341858-54341877 | Msa0077430:intron | 30.0% |
| AGGATATTTCATTCTCTACT+AGG | - | chr1_2:54342095-54342114 | Msa0077430:intron | 30.0% | |
| CGACTAATATGATTTATCTG+TGG | - | chr1_2:54342259-54342278 | Msa0077430:intron | 30.0% | |
| !! | CTCACTAATGGATTAAATCA+TGG | + | chr1_2:54342405-54342424 | None:intergenic | 30.0% |
| AATCCATTAGTGAGAAAAAG+AGG | - | chr1_2:54342411-54342430 | Msa0077430:intron | 30.0% | |
| ! | GTTTTCCACAAGTTACAAAT+TGG | - | chr1_2:54342544-54342563 | Msa0077430:intron | 30.0% |
| GTTTACCAATTTGTAACTTG+TGG | + | chr1_2:54342552-54342571 | None:intergenic | 30.0% | |
| AGTTACAAATTGGTAAACTG+AGG | - | chr1_2:54342554-54342573 | Msa0077430:intron | 30.0% | |
| GTTACAAATTGGTAAACTGA+GGG | - | chr1_2:54342555-54342574 | Msa0077430:intron | 30.0% | |
| !!! | CGATTTTTTAGAATTGCGTA+TGG | - | chr1_2:54342673-54342692 | Msa0077430:intron | 30.0% |
| TAGAATTGCGTATGGAAAAA+TGG | - | chr1_2:54342681-54342700 | Msa0077430:intron | 30.0% | |
| ACATGCATAGTACTATTAGT+CGG | + | chr1_2:54343208-54343227 | None:intergenic | 30.0% | |
| ATGTTAGTAAGCTTTCTTGA+TGG | - | chr1_2:54343224-54343243 | Msa0077430:intron | 30.0% | |
| TGTTAGTAAGCTTTCTTGAT+GGG | - | chr1_2:54343225-54343244 | Msa0077430:intron | 30.0% | |
| TTGATTTACTTTCTTGCATC+AGG | - | chr1_2:54343288-54343307 | Msa0077430:CDS | 30.0% | |
| TGATTTACTTTCTTGCATCA+GGG | - | chr1_2:54343289-54343308 | Msa0077430:CDS | 30.0% | |
| AGAATAGTCTTCACACATTT+GGG | - | chr1_2:54343371-54343390 | Msa0077430:five_prime_UTR | 30.0% | |
| ! | ATTACTTCATCAGTTCTAGC+TGG | - | chr1_2:54334642-54334661 | Msa0077430:intron | 35.0% |
| ! | CAGAAGGATTCTTCTTTTCA+TGG | - | chr1_2:54334716-54334735 | Msa0077430:intron | 35.0% |
| !! | CTTTTGATTGTAGGCATGTT+CGG | + | chr1_2:54334820-54334839 | None:intergenic | 35.0% |
| ! | ATGCCTACAATCAAAAGTGT+CGG | - | chr1_2:54334823-54334842 | Msa0077430:intron | 35.0% |
| ! | TGGTGGTAGTTGAATTTTGA+AGG | - | chr1_2:54334958-54334977 | Msa0077430:intron | 35.0% |
| !! | AGTTGAATTTTGAAGGTCTG+TGG | - | chr1_2:54334965-54334984 | Msa0077430:intron | 35.0% |
| !! | AAACTTTTCAAGGGGAAGAA+AGG | - | chr1_2:54335071-54335090 | Msa0077430:intron | 35.0% |
| CAATGAAACTGTTGCTAAGA+AGG | - | chr1_2:54335094-54335113 | Msa0077430:intron | 35.0% | |
| ATTGTGTGTACTATGTCCTT+TGG | - | chr1_2:54335136-54335155 | Msa0077430:intron | 35.0% | |
| GTACTATGTCCTTTGGTTAT+AGG | - | chr1_2:54335143-54335162 | Msa0077430:intron | 35.0% | |
| ! | GTATTTTGTGTTGTGTGATC+AGG | - | chr1_2:54335174-54335193 | Msa0077430:intron | 35.0% |
| GAGAACTAGTTATTTGCTCA+AGG | + | chr1_2:54335275-54335294 | None:intergenic | 35.0% | |
| ! | AGCAAATAACTAGTTCTCCA+TGG | - | chr1_2:54335277-54335296 | Msa0077430:intron | 35.0% |
| ! | ATTCTGTTTTCTTGGTAGAG+AGG | + | chr1_2:54335503-54335522 | None:intergenic | 35.0% |
| ATAGTACCAGAACCAAAGTT+AGG | + | chr1_2:54335576-54335595 | None:intergenic | 35.0% | |
| AGACCTTCTATCCCAAATTT+CGG | - | chr1_2:54335742-54335761 | Msa0077430:intron | 35.0% | |
| AGACCCTTCATATACTTGTA+AGG | + | chr1_2:54335876-54335895 | None:intergenic | 35.0% | |
| ACATTGAATTTAATTCCCGG+AGG | - | chr1_2:54335945-54335964 | Msa0077430:intron | 35.0% | |
| GAACCAAACTGAAATAGTGA+AGG | - | chr1_2:54336080-54336099 | Msa0077430:intron | 35.0% | |
| ! | TAGGTTGGAATTGTTTCATG+AGG | + | chr1_2:54336260-54336279 | None:intergenic | 35.0% |
| AATAAAACACGGAACTGCAA+AGG | + | chr1_2:54336605-54336624 | None:intergenic | 35.0% | |
| GCTTACTCTCTAAGTTACTT+AGG | - | chr1_2:54336799-54336818 | Msa0077430:intron | 35.0% | |
| !!! | CCTTCGGTGAGAATTTTTTT+CGG | - | chr1_2:54337030-54337049 | Msa0077430:intron | 35.0% |
| TTGTTACAGCAATAAAGGAG+GGG | + | chr1_2:54337082-54337101 | None:intergenic | 35.0% | |
| CTAAAAACAAAGACCAGATC+TGG | + | chr1_2:54337395-54337414 | None:intergenic | 35.0% | |
| GAAAAATCACGCAAAACGAA+AGG | + | chr1_2:54337463-54337482 | None:intergenic | 35.0% | |
| GAACAATAGTATGTCCCAAA+TGG | + | chr1_2:54337614-54337633 | None:intergenic | 35.0% | |
| GACATACTATTGTTCAATGC+AGG | - | chr1_2:54337619-54337638 | Msa0077430:intron | 35.0% | |
| CGGAGAAAATCTTCATAAGT+TGG | + | chr1_2:54337726-54337745 | None:intergenic | 35.0% | |
| ! | CTTATGAAGATTTTCTCCGA+TGG | - | chr1_2:54337727-54337746 | Msa0077430:intron | 35.0% |
| !! | CCATTTGCTGTGATAATACT+CGG | + | chr1_2:54337925-54337944 | None:intergenic | 35.0% |
| CAGATGTAATTGACAGAGAA+GGG | + | chr1_2:54337990-54338009 | None:intergenic | 35.0% | |
| ACAGATGTAATTGACAGAGA+AGG | + | chr1_2:54337991-54338010 | None:intergenic | 35.0% | |
| TGTGTTGTCACCTTTACTAA+AGG | - | chr1_2:54338075-54338094 | Msa0077430:intron | 35.0% | |
| !! | TAAAGGCAATGTTACTTTGC+AGG | - | chr1_2:54338092-54338111 | Msa0077430:intron | 35.0% |
| ACTGAGCATGTATAGTAAGA+GGG | + | chr1_2:54338212-54338231 | None:intergenic | 35.0% | |
| AACTGAGCATGTATAGTAAG+AGG | + | chr1_2:54338213-54338232 | None:intergenic | 35.0% | |
| TCTTACTATACATGCTCAGT+TGG | - | chr1_2:54338212-54338231 | Msa0077430:intron | 35.0% | |
| CTTACTATACATGCTCAGTT+GGG | - | chr1_2:54338213-54338232 | Msa0077430:intron | 35.0% | |
| ! | TTTGAAGTTTGAGGAGACTT+GGG | + | chr1_2:54338242-54338261 | None:intergenic | 35.0% |
| !! | AGAATGGACTAAAGCAAAAG+GGG | + | chr1_2:54338373-54338392 | None:intergenic | 35.0% |
| !! | CAGAATGGACTAAAGCAAAA+GGG | + | chr1_2:54338374-54338393 | None:intergenic | 35.0% |
| !! | TCAGAATGGACTAAAGCAAA+AGG | + | chr1_2:54338375-54338394 | None:intergenic | 35.0% |
| TTTAGTCCATTCTGATGTCT+GGG | - | chr1_2:54338380-54338399 | Msa0077430:intron | 35.0% | |
| TTGATGAAGAATACCATTGG+AGG | + | chr1_2:54338631-54338650 | None:intergenic | 35.0% | |
| ! | TGAGATGACTATTTTCCGTT+CGG | + | chr1_2:54338691-54338710 | None:intergenic | 35.0% |
| ATGAAGTAAAAGAGTTCGAG+TGG | + | chr1_2:54338720-54338739 | None:intergenic | 35.0% | |
| ! | GTAATGTTCCGTTTCGTTTT+TGG | - | chr1_2:54338741-54338760 | Msa0077430:intron | 35.0% |
| !! | AATGTTCCGTTTCGTTTTTG+GGG | - | chr1_2:54338743-54338762 | Msa0077430:intron | 35.0% |
| !! | GTAAAGGGGTATTAGGAAAA+AGG | + | chr1_2:54338847-54338866 | None:intergenic | 35.0% |
| AAGATCGTGAACAAAACATG+TGG | + | chr1_2:54338897-54338916 | None:intergenic | 35.0% | |
| AAAGACACATTTGAGTGATC+GGG | + | chr1_2:54338945-54338964 | None:intergenic | 35.0% | |
| GAAAGACACATTTGAGTGAT+CGG | + | chr1_2:54338946-54338965 | None:intergenic | 35.0% | |
| TCACTCAAATGTGTCTTTCT+TGG | - | chr1_2:54338947-54338966 | Msa0077430:intron | 35.0% | |
| GTGTCTTTCTTGGTTATCAT+CGG | - | chr1_2:54338957-54338976 | Msa0077430:intron | 35.0% | |
| ATGTAACATCAGCTGACATT+AGG | + | chr1_2:54339027-54339046 | None:intergenic | 35.0% | |
| !! | AGGAACATAAATAGTGGACT+CGG | + | chr1_2:54339163-54339182 | None:intergenic | 35.0% |
| ! | GTTCCTATTGCTATTCGTAA+AGG | - | chr1_2:54339372-54339391 | Msa0077430:intron | 35.0% |
| AAGTCAATGTAATGAGGAGA+TGG | + | chr1_2:54339417-54339436 | None:intergenic | 35.0% | |
| TAGCACAAGTCAATGTAATG+AGG | + | chr1_2:54339423-54339442 | None:intergenic | 35.0% | |
| ACAAGCAAGTATAATGCAAG+GGG | + | chr1_2:54339458-54339477 | None:intergenic | 35.0% | |
| GACAAGCAAGTATAATGCAA+GGG | + | chr1_2:54339459-54339478 | None:intergenic | 35.0% | |
| AGACAAGCAAGTATAATGCA+AGG | + | chr1_2:54339460-54339479 | None:intergenic | 35.0% | |
| ATCGATCAACTTTACCATCA+GGG | + | chr1_2:54339662-54339681 | None:intergenic | 35.0% | |
| AATCGATCAACTTTACCATC+AGG | + | chr1_2:54339663-54339682 | None:intergenic | 35.0% | |
| !! | AAGTCTAACAGATGCCATTT+TGG | + | chr1_2:54339760-54339779 | None:intergenic | 35.0% |
| CTATTACAGCTATTCGTCAT+TGG | - | chr1_2:54339787-54339806 | Msa0077430:intron | 35.0% | |
| !! | TTAATGTCAAGTTGATGGAG+AGG | + | chr1_2:54339813-54339832 | None:intergenic | 35.0% |
| TATATATGGAGCAACCACAT+GGG | - | chr1_2:54339868-54339887 | Msa0077430:intron | 35.0% | |
| CAATAAGATAAATGCACCCT+TGG | + | chr1_2:54340060-54340079 | None:intergenic | 35.0% | |
| GTGGATGATATTGTCATAAC+TGG | - | chr1_2:54340085-54340104 | Msa0077430:intron | 35.0% | |
| ! | ATAACTGGTAGTGATCAACA+TGG | - | chr1_2:54340100-54340119 | Msa0077430:intron | 35.0% |
| ! | AAAAGTAACGGAGTTTACCA+AGG | + | chr1_2:54340174-54340193 | None:intergenic | 35.0% |
| !!! | TGGTAAACTCCGTTACTTTT+TGG | - | chr1_2:54340174-54340193 | Msa0077430:intron | 35.0% |
| !!! | GGTAAACTCCGTTACTTTTT+GGG | - | chr1_2:54340175-54340194 | Msa0077430:intron | 35.0% |
| CCTCAATACCCAAAAAGTAA+CGG | + | chr1_2:54340186-54340205 | None:intergenic | 35.0% | |
| TACAATACCATCCTTGGATT+GGG | + | chr1_2:54340212-54340231 | None:intergenic | 35.0% | |
| TTACAATACCATCCTTGGAT+TGG | + | chr1_2:54340213-54340232 | None:intergenic | 35.0% | |
| AGTTTGACATTTGGATCCAT+AGG | + | chr1_2:54340307-54340326 | None:intergenic | 35.0% | |
| ! | CAAACTTTTACCTAATCAGG+GGG | - | chr1_2:54340321-54340340 | Msa0077430:intron | 35.0% |
| TTCAGGAAGATATAGGAGAT+TGG | - | chr1_2:54340357-54340376 | Msa0077430:intron | 35.0% | |
| !! | TAAATACATCAAAGGTGCTC+CGG | - | chr1_2:54340498-54340517 | Msa0077430:intron | 35.0% |
| ! | TCATAAATGAGACCTTTTCC+CGG | + | chr1_2:54340520-54340539 | None:intergenic | 35.0% |
| GGTCTCATTTATGAGGATAA+AGG | - | chr1_2:54340526-54340545 | Msa0077430:intron | 35.0% | |
| AAAGGACATACTCAGATAGT+TGG | - | chr1_2:54340544-54340563 | Msa0077430:intron | 35.0% | |
| AACTTCAATTCGAAGAAGCA+CGG | - | chr1_2:54340764-54340783 | Msa0077430:intron | 35.0% | |
| ! | GTTTTTACAAAATCTCTGCG+AGG | - | chr1_2:54340955-54340974 | Msa0077430:intron | 35.0% |
| AGTTATATATGTGGCAAGCT+TGG | - | chr1_2:54340988-54341007 | Msa0077430:intron | 35.0% | |
| !! | CACCCTAAGTATTGAATCTT+TGG | - | chr1_2:54341143-54341162 | Msa0077430:intron | 35.0% |
| CTGCCAAAGATTCAATACTT+AGG | + | chr1_2:54341255-54341274 | None:intergenic | 35.0% | |
| !!! | ATTTTTTTTTTGGCCTTGGG+GGG | - | chr1_2:54341226-54341245 | Msa0077430:intron | 35.0% |
| CTGCCAAAGATTCAATACTT+AGG | - | chr1_2:54341255-54341274 | Msa0077430:intron | 35.0% | |
| !! | CTCCCTAAGTATTGAATCTT+TGG | + | chr1_2:54341261-54341280 | None:intergenic | 35.0% |
| GCTTACTCTCTAAGTTACTT+AGG | - | chr1_2:54336799-54336818 | Msa0077430:intron | 35.0% | |
| ATTCAACAAGCATCATTGGT+TGG | - | chr1_2:54341559-54341578 | Msa0077430:intron | 35.0% | |
| !! | GTTGATAGTACTGTGAGTAT+AGG | - | chr1_2:54341581-54341600 | Msa0077430:intron | 35.0% |
| ! | TGATCCTTTTATATTGGGTC+CGG | - | chr1_2:54341687-54341706 | Msa0077430:intron | 35.0% |
| GTCAGTACATGTACATCATT+AGG | - | chr1_2:54341732-54341751 | Msa0077430:intron | 35.0% | |
| ! | TGAGTATGATGGAATAGTCT+CGG | + | chr1_2:54341917-54341936 | None:intergenic | 35.0% |
| CAGTACAACTATACACGATT+TGG | + | chr1_2:54341963-54341982 | None:intergenic | 35.0% | |
| TGATTTATGATCATTGTCCG+TGG | - | chr1_2:54341981-54342000 | Msa0077430:intron | 35.0% | |
| ! | TCTTGACTTTTGTCAAGTAC+TGG | - | chr1_2:54342021-54342040 | Msa0077430:intron | 35.0% |
| TAACCAACATAAGTCACCAT+CGG | - | chr1_2:54342210-54342229 | Msa0077430:intron | 35.0% | |
| TGATTGTTAGTAGGAAGAGA+AGG | - | chr1_2:54342301-54342320 | Msa0077430:intron | 35.0% | |
| ! | ATGCCTCTTTTTCTCACTAA+TGG | + | chr1_2:54342417-54342436 | None:intergenic | 35.0% |
| CACATCTTGGTTATAGTCTT+GGG | + | chr1_2:54342466-54342485 | None:intergenic | 35.0% | |
| !! | CTTGTGGAAAACTGTTTTAG+TGG | + | chr1_2:54342536-54342555 | None:intergenic | 35.0% |
| AATACAGCACTGCATAGATT+CGG | - | chr1_2:54342740-54342759 | Msa0077430:CDS | 35.0% | |
| GCTAACTTCGGAAAAATAAC+AGG | - | chr1_2:54342785-54342804 | Msa0077430:intron | 35.0% | |
| ! | TATTTTACAAGAGCCTCCTA+AGG | + | chr1_2:54342853-54342872 | None:intergenic | 35.0% |
| AAAATAGATGCATAAGTGGC+AGG | - | chr1_2:54342867-54342886 | Msa0077430:intron | 35.0% | |
| !! | AAACTTGCTGAAATTTCCAG+TGG | - | chr1_2:54342898-54342917 | Msa0077430:intron | 35.0% |
| CATGCATAGTACTATTAGTC+GGG | + | chr1_2:54343207-54343226 | None:intergenic | 35.0% | |
| TCTTTCTGAATCTGAAAGCA+AGG | - | chr1_2:54343315-54343334 | Msa0077430:exon | 35.0% | |
| ATCATCAGTTGCTATCAAGA+AGG | - | chr1_2:54343340-54343359 | Msa0077430:five_prime_UTR | 35.0% | |
| CAGAATAGTCTTCACACATT+TGG | - | chr1_2:54343370-54343389 | Msa0077430:five_prime_UTR | 35.0% | |
| ! | CCGCTATTGTTTTCTTGTTG+CGG | + | chr1_2:54334429-54334448 | None:intergenic | 40.0% |
| CCGCAACAAGAAAACAATAG+CGG | - | chr1_2:54334426-54334445 | Msa0077430:exon | 40.0% | |
| ACATGGTGATTGATCAACCT+TGG | + | chr1_2:54334459-54334478 | None:intergenic | 40.0% | |
| !! | ATCGTTGACTTTGTCAGACA+TGG | + | chr1_2:54334476-54334495 | None:intergenic | 40.0% |
| !! | AATGAAACCTTGGTTCTGAG+AGG | + | chr1_2:54334535-54334554 | None:intergenic | 40.0% |
| CTAAGAAGCTTCAGTTCAGA+AGG | - | chr1_2:54334700-54334719 | Msa0077430:intron | 40.0% | |
| ! | TTCTATGTTTTCCTTAGCCC+TGG | - | chr1_2:54335197-54335216 | Msa0077430:intron | 40.0% |
| TAAAACAAGTACCAGGGCTA+AGG | + | chr1_2:54335211-54335230 | None:intergenic | 40.0% | |
| ! | TGTTTTCTTGGTAGAGAGGT+GGG | + | chr1_2:54335499-54335518 | None:intergenic | 40.0% |
| TTCCTTATATTGCTCTCCTC+CGG | + | chr1_2:54335964-54335983 | None:intergenic | 40.0% | |
| GACCCTTCACTATTTCAGTT+TGG | + | chr1_2:54336086-54336105 | None:intergenic | 40.0% | |
| TACAAAGCACAATGCAGTGA+AGG | + | chr1_2:54336349-54336368 | None:intergenic | 40.0% | |
| ! | GTCAACAGTCTTATGCTGTT+TGG | - | chr1_2:54336475-54336494 | Msa0077430:intron | 40.0% |
| TAATTCACCCAACCAACGAT+AGG | + | chr1_2:54336572-54336591 | None:intergenic | 40.0% | |
| CCGAAAAAAATTCTCACCGA+AGG | + | chr1_2:54337033-54337052 | None:intergenic | 40.0% | |
| TGTTACAGCAATAAAGGAGG+GGG | + | chr1_2:54337081-54337100 | None:intergenic | 40.0% | |
| ! | TCAGCAAAGAATTTCGAGTC+TGG | + | chr1_2:54337370-54337389 | None:intergenic | 40.0% |
| !! | TTCTTTGCTGATTCCAGATC+TGG | - | chr1_2:54337379-54337398 | Msa0077430:intron | 40.0% |
| ACGCAAAACGAAAGGATTCA+CGG | + | chr1_2:54337455-54337474 | None:intergenic | 40.0% | |
| ! | TTGCGTGATTTTTCTCTCTC+CGG | - | chr1_2:54337469-54337488 | Msa0077430:intron | 40.0% |
| TGGTGACAGTACCTACATTT+GGG | + | chr1_2:54337594-54337613 | None:intergenic | 40.0% | |
| ATGGTGACAGTACCTACATT+TGG | + | chr1_2:54337595-54337614 | None:intergenic | 40.0% | |
| ! | ATGTAGGTACTGTCACCATT+TGG | - | chr1_2:54337596-54337615 | Msa0077430:intron | 40.0% |
| ! | TGTAGGTACTGTCACCATTT+GGG | - | chr1_2:54337597-54337616 | Msa0077430:intron | 40.0% |
| GCGTCAGATATACCAATCAA+AGG | + | chr1_2:54337669-54337688 | None:intergenic | 40.0% | |
| TTGGTATATCTGACGCCATT+CGG | - | chr1_2:54337673-54337692 | Msa0077430:intron | 40.0% | |
| CGTAGAAACCTTAGGAGAAT+CGG | + | chr1_2:54337703-54337722 | None:intergenic | 40.0% | |
| ! | TAAGTTGGCGTAGAAACCTT+AGG | + | chr1_2:54337711-54337730 | None:intergenic | 40.0% |
| GGTGCAACTCATCATATTAC+CGG | - | chr1_2:54337852-54337871 | Msa0077430:intron | 40.0% | |
| AGTAACCAGATGTAGTGAGA+GGG | + | chr1_2:54337900-54337919 | None:intergenic | 40.0% | |
| AAGTAACCAGATGTAGTGAG+AGG | + | chr1_2:54337901-54337920 | None:intergenic | 40.0% | |
| CCGAGTATTATCACAGCAAA+TGG | - | chr1_2:54337922-54337941 | Msa0077430:intron | 40.0% | |
| ! | AATGCCTGTTGACTGTGTTT+CGG | + | chr1_2:54337950-54337969 | None:intergenic | 40.0% |
| ACATCTGTTCTTTATGTCCC+TGG | - | chr1_2:54338003-54338022 | Msa0077430:intron | 40.0% | |
| !! | GCAATGTTACTTTGCAGGAT+CGG | - | chr1_2:54338097-54338116 | Msa0077430:intron | 40.0% |
| TACTTTGCAGGATCGGATTT+CGG | - | chr1_2:54338104-54338123 | Msa0077430:intron | 40.0% | |
| TATAGTAAGAGGGGAATCTG+TGG | + | chr1_2:54338202-54338221 | None:intergenic | 40.0% | |
| CTGAGCATGTATAGTAAGAG+GGG | + | chr1_2:54338211-54338230 | None:intergenic | 40.0% | |
| !! | CTTTGAAGTTTGAGGAGACT+TGG | + | chr1_2:54338243-54338262 | None:intergenic | 40.0% |
| CAAGTCTCCTCAAACTTCAA+AGG | - | chr1_2:54338241-54338260 | Msa0077430:intron | 40.0% | |
| TCTCCTCAAACTTCAAAGGT+TGG | - | chr1_2:54338245-54338264 | Msa0077430:intron | 40.0% | |
| ATTGTGAGTCGTGTCAGTTA+GGG | - | chr1_2:54338298-54338317 | Msa0077430:intron | 40.0% | |
| !! | TGCTCGTTTATTGACTCGAT+CGG | + | chr1_2:54338346-54338365 | None:intergenic | 40.0% |
| CTTTAGTCCATTCTGATGTC+TGG | - | chr1_2:54338379-54338398 | Msa0077430:intron | 40.0% | |
| TTAGTCCATTCTGATGTCTG+GGG | - | chr1_2:54338381-54338400 | Msa0077430:intron | 40.0% | |
| ! | ATGACTTTTCTCGTTGCACA+TGG | - | chr1_2:54338457-54338476 | Msa0077430:intron | 40.0% |
| ! | CCCATTTTGTTGAGGTGTAT+GGG | + | chr1_2:54338664-54338683 | None:intergenic | 40.0% |
| CCCATACACCTCAACAAAAT+GGG | - | chr1_2:54338661-54338680 | Msa0077430:intron | 40.0% | |
| CCATACACCTCAACAAAATG+GGG | - | chr1_2:54338662-54338681 | Msa0077430:intron | 40.0% | |
| !! | ATGTTCCGTTTCGTTTTTGG+GGG | - | chr1_2:54338744-54338763 | Msa0077430:intron | 40.0% |
| TATAAATCGCATGCCTTCCT+CGG | - | chr1_2:54338793-54338812 | Msa0077430:intron | 40.0% | |
| !! | AGTGAGTGTAAAGGGGTATT+AGG | + | chr1_2:54338854-54338873 | None:intergenic | 40.0% |
| TTTGTTCACGATCTTTCTCC+TGG | - | chr1_2:54338902-54338921 | Msa0077430:intron | 40.0% | |
| GGTTATCATCGGTCTCAAAA+AGG | - | chr1_2:54338968-54338987 | Msa0077430:intron | 40.0% | |
| TTGGCATATCATCCTGAAGT+GGG | + | chr1_2:54339095-54339114 | None:intergenic | 40.0% | |
| AAGAGGAACAATATCAGACG+AGG | + | chr1_2:54339118-54339137 | None:intergenic | 40.0% | |
| ! | ACAGACACAATAGGTTGAAG+AGG | + | chr1_2:54339135-54339154 | None:intergenic | 40.0% |
| !! | GGAACATAAATAGTGGACTC+GGG | + | chr1_2:54339162-54339181 | None:intergenic | 40.0% |
| TATTTATGTTCCTCCTCCCA+CGG | - | chr1_2:54339170-54339189 | Msa0077430:intron | 40.0% | |
| CGACATTGGTAAGTTTGAAG+AGG | + | chr1_2:54339249-54339268 | None:intergenic | 40.0% | |
| ! | TCAGTATCTGGAATAGGTGT+CGG | + | chr1_2:54339297-54339316 | None:intergenic | 40.0% |
| GCAATAGGAACATCTGTAGT+CGG | + | chr1_2:54339363-54339382 | None:intergenic | 40.0% | |
| CAAGCAAGTATAATGCAAGG+GGG | + | chr1_2:54339457-54339476 | None:intergenic | 40.0% | |
| TATTCCTAAATCTCCAGGAG+AGG | - | chr1_2:54339497-54339516 | Msa0077430:intron | 40.0% | |
| ! | GAACTAGTTTCTTTACCTCC+CGG | - | chr1_2:54339591-54339610 | Msa0077430:intron | 40.0% |
| !! | AGGTTGTCGTTGGCTTTATA+CGG | - | chr1_2:54339626-54339645 | Msa0077430:intron | 40.0% |
| !! | TGGCTTTATACGGTGAAAGT+TGG | - | chr1_2:54339636-54339655 | Msa0077430:intron | 40.0% |
| TTATGGTGACACATTCTCTC+CGG | - | chr1_2:54339731-54339750 | Msa0077430:intron | 40.0% | |
| GTATATATGGAGCAACCACA+TGG | - | chr1_2:54339867-54339886 | Msa0077430:intron | 40.0% | |
| ! | AGTCATCTACCATGGTTTGT+CGG | - | chr1_2:54339907-54339926 | Msa0077430:intron | 40.0% |
| TTAAACAATCTCCTCGAGCT+TGG | - | chr1_2:54339952-54339971 | Msa0077430:intron | 40.0% | |
| !!! | CCGTTACTTTTTGGGTATTG+AGG | - | chr1_2:54340183-54340202 | Msa0077430:intron | 40.0% |
| TATTGAGGTAACCCAATCCA+AGG | - | chr1_2:54340198-54340217 | Msa0077430:intron | 40.0% | |
| GGAAGATATAGGAGATTGGT+TGG | - | chr1_2:54340361-54340380 | Msa0077430:intron | 40.0% | |
| CTAACTGCAAAGGAAATGTC+TGG | + | chr1_2:54340415-54340434 | None:intergenic | 40.0% | |
| CATTTCCTTTGCAGTTAGTG+TGG | - | chr1_2:54340417-54340436 | Msa0077430:intron | 40.0% | |
| !! | AAATACATCAAAGGTGCTCC+GGG | - | chr1_2:54340499-54340518 | Msa0077430:intron | 40.0% |
| GGGAAAAGGTCTCATTTATG+AGG | - | chr1_2:54340519-54340538 | Msa0077430:intron | 40.0% | |
| TTGGTTACTCAGATGTTGAC+TGG | - | chr1_2:54340563-54340582 | Msa0077430:intron | 40.0% | |
| ! | TGGTTACTCAGATGTTGACT+GGG | - | chr1_2:54340564-54340583 | Msa0077430:intron | 40.0% |
| GAAGTGGATCGTCTATCAAT+GGG | + | chr1_2:54340598-54340617 | None:intergenic | 40.0% | |
| AGAAGTGGATCGTCTATCAA+TGG | + | chr1_2:54340599-54340618 | None:intergenic | 40.0% | |
| ATTGATAGACGATCCACTTC+TGG | - | chr1_2:54340598-54340617 | Msa0077430:intron | 40.0% | |
| TTGATAGACGATCCACTTCT+GGG | - | chr1_2:54340599-54340618 | Msa0077430:intron | 40.0% | |
| AAGTACACAATACCCAGAAG+TGG | + | chr1_2:54340614-54340633 | None:intergenic | 40.0% | |
| ! | TCTGGGTATTGTGTACTTGT+TGG | - | chr1_2:54340616-54340635 | Msa0077430:intron | 40.0% |
| TCTTACTCTTCCAGGATATC+AGG | + | chr1_2:54340648-54340667 | None:intergenic | 40.0% | |
| !! | AAGCGCTGAGGCAAAATATA+GGG | - | chr1_2:54340690-54340709 | Msa0077430:intron | 40.0% |
| TTCACATGTTACTAGTGCCA+TGG | + | chr1_2:54340716-54340735 | None:intergenic | 40.0% | |
| TTGGTTGAAGCAGCTACTTA+AGG | - | chr1_2:54340741-54340760 | Msa0077430:intron | 40.0% | |
| TGCATGGAACATTGGATTTG+AGG | + | chr1_2:54340833-54340852 | None:intergenic | 40.0% | |
| CAAATCCAATGTTCCATGCA+AGG | - | chr1_2:54340833-54340852 | Msa0077430:intron | 40.0% | |
| GCAGTCTATCTCGATATGTT+TGG | + | chr1_2:54340860-54340879 | None:intergenic | 40.0% | |
| GTCAGAGAGAAGATTGAATC+AGG | - | chr1_2:54340886-54340905 | Msa0077430:intron | 40.0% | |
| ACTTATATGCTCCAGCTTGA+TGG | - | chr1_2:54341019-54341038 | Msa0077430:intron | 40.0% | |
| CTTATATGCTCCAGCTTGAT+GGG | - | chr1_2:54341020-54341039 | Msa0077430:intron | 40.0% | |
| TTATATGCTCCAGCTTGATG+GGG | - | chr1_2:54341021-54341040 | Msa0077430:intron | 40.0% | |
| !!! | GCAAGTTTTGGAAAGATAGG+GGG | + | chr1_2:54341317-54341336 | None:intergenic | 40.0% |
| !!! | CGCAAGTTTTGGAAAGATAG+GGG | + | chr1_2:54341316-54341335 | None:intergenic | 40.0% |
| !!! | CCGCAAGTTTTGGAAAGATA+GGG | + | chr1_2:54341315-54341334 | None:intergenic | 40.0% |
| CCCTATCTTTCCAAAACTTG+CGG | - | chr1_2:54341086-54341105 | Msa0077430:intron | 40.0% | |
| !!! | ACCGCAAGTTTTGGAAAGAT+AGG | + | chr1_2:54341314-54341333 | None:intergenic | 40.0% |
| !!! | ACCGCAAGTTTTGGAAAGAT+AGG | - | chr1_2:54341314-54341333 | Msa0077430:intron | 40.0% |
| CCCTATCTTTCCAAAACTTG+CGG | + | chr1_2:54341086-54341105 | None:intergenic | 40.0% | |
| !!! | CCGCAAGTTTTGGAAAGATA+GGG | - | chr1_2:54341315-54341334 | Msa0077430:intron | 40.0% |
| !!! | CGCAAGTTTTGGAAAGATAG+GGG | - | chr1_2:54341316-54341335 | Msa0077430:intron | 40.0% |
| !!! | GCAAGTTTTGGAAAGATAGG+GGG | - | chr1_2:54341317-54341336 | Msa0077430:intron | 40.0% |
| AAAGCCGGACCCAATATAAA+AGG | + | chr1_2:54341694-54341713 | None:intergenic | 40.0% | |
| TTAGGCCACTAAGATTGCTT+TGG | - | chr1_2:54341750-54341769 | Msa0077430:intron | 40.0% | |
| AACAGCCAAAGCAATCTTAG+TGG | + | chr1_2:54341758-54341777 | None:intergenic | 40.0% | |
| ATAACCAGAGAACCACCTTA+TGG | + | chr1_2:54341873-54341892 | None:intergenic | 40.0% | |
| GAAACAAGTTTGACAACGCT+AGG | - | chr1_2:54342163-54342182 | Msa0077430:intron | 40.0% | |
| AACCAACATAAGTCACCATC+GGG | - | chr1_2:54342211-54342230 | Msa0077430:intron | 40.0% | |
| !!! | ATGGTGAATTTTTTTCCCGC+TGG | + | chr1_2:54342386-54342405 | None:intergenic | 40.0% |
| CCACATCTTGGTTATAGTCT+TGG | + | chr1_2:54342467-54342486 | None:intergenic | 40.0% | |
| CCAAGACTATAACCAAGATG+TGG | - | chr1_2:54342464-54342483 | Msa0077430:CDS | 40.0% | |
| TGCATTTGTCTTCCACATCT+TGG | + | chr1_2:54342479-54342498 | None:intergenic | 40.0% | |
| ! | ACGATTGTAACTTGCATCTC+AGG | - | chr1_2:54342503-54342522 | Msa0077430:CDS | 40.0% |
| TGAAACGGTGGTCAGAAATA+TGG | - | chr1_2:54342616-54342635 | Msa0077430:intron | 40.0% | |
| CTCAACATCATGTAACTGCT+GGG | - | chr1_2:54342646-54342665 | Msa0077430:intron | 40.0% | |
| TCAACATCATGTAACTGCTG+GGG | - | chr1_2:54342647-54342666 | Msa0077430:intron | 40.0% | |
| ! | CTAAGGTTCTGTTTTCAACG+CGG | + | chr1_2:54342836-54342855 | None:intergenic | 40.0% |
| GTTGAAAACAGAACCTTAGG+AGG | - | chr1_2:54342837-54342856 | Msa0077430:intron | 40.0% | |
| AAATTTCCAGTGGCTACTGA+TGG | - | chr1_2:54342908-54342927 | Msa0077430:intron | 40.0% | |
| ATTCAATATGGTATCACCGC+AGG | + | chr1_2:54342973-54342992 | None:intergenic | 40.0% | |
| TGTGAAGACTATTCTGTCCT+AGG | + | chr1_2:54343366-54343385 | None:intergenic | 40.0% | |
| TAGTCTTCACACATTTGGGA+TGG | - | chr1_2:54343375-54343394 | Msa0077430:five_prime_UTR | 40.0% | |
| CTGACAAAGTCAACGATGCT+TGG | - | chr1_2:54334479-54334498 | Msa0077430:intron | 45.0% | |
| GAGGATGAAGCTTAAGCTGA+AGG | + | chr1_2:54334516-54334535 | None:intergenic | 45.0% | |
| !! | ATTGTAGGCATGTTCGGTGT+TGG | + | chr1_2:54334814-54334833 | None:intergenic | 45.0% |
| !! | GCACCGACACTTTTGATTGT+AGG | + | chr1_2:54334829-54334848 | None:intergenic | 45.0% |
| CTATATGGTTTCGCCTATGC+AGG | - | chr1_2:54335014-54335033 | Msa0077430:intron | 45.0% | |
| ! | CTGTTTTCTTGGTAGAGAGG+TGG | + | chr1_2:54335500-54335519 | None:intergenic | 45.0% |
| ! | GCACCGAAATTTGGGATAGA+AGG | + | chr1_2:54335748-54335767 | None:intergenic | 45.0% |
| TCCTTATATTGCTCTCCTCC+GGG | + | chr1_2:54335963-54335982 | None:intergenic | 45.0% | |
| !! | AAAGTGTGAGGTTGGTTTGC+AGG | - | chr1_2:54336372-54336391 | Msa0077430:intron | 45.0% |
| CTACCCTACTGTTCAGTTGA+CGG | - | chr1_2:54336434-54336453 | Msa0077430:intron | 45.0% | |
| ! | GTCTTATGCTGTTTGGCCAA+TGG | - | chr1_2:54336482-54336501 | Msa0077430:intron | 45.0% |
| !! | ATGCAGTTTTGGCCTATCGT+TGG | - | chr1_2:54336557-54336576 | Msa0077430:intron | 45.0% |
| !! | AGTTTTGGCCTATCGTTGGT+TGG | - | chr1_2:54336561-54336580 | Msa0077430:intron | 45.0% |
| !! | GTTTTGGCCTATCGTTGGTT+GGG | - | chr1_2:54336562-54336581 | Msa0077430:intron | 45.0% |
| ! | GGAACTGCAAAGGCATATAC+TGG | + | chr1_2:54336595-54336614 | None:intergenic | 45.0% |
| !! | ACAGCTTTGTTGGTTCATGC+TGG | - | chr1_2:54336627-54336646 | Msa0077430:intron | 45.0% |
| TGTTGCGCTATTCAGACACA+CGG | - | chr1_2:54336905-54336924 | Msa0077430:intron | 45.0% | |
| GTGTAGGGTTGTCTCTCAAT+AGG | + | chr1_2:54336981-54337000 | None:intergenic | 45.0% | |
| ! | TGCTCGTTTGAACCCTTTTC+CGG | - | chr1_2:54337109-54337128 | Msa0077430:intron | 45.0% |
| ! | CGTTTCGGATGGTGATTTTC+CGG | + | chr1_2:54337234-54337253 | None:intergenic | 45.0% |
| AACTAGAGCACGTATTTCCG+TGG | + | chr1_2:54337425-54337444 | None:intergenic | 45.0% | |
| GAAAAGATCACAAGCGGAAG+CGG | + | chr1_2:54337507-54337526 | None:intergenic | 45.0% | |
| GGACGAGTCATGAAGATAGA+TGG | + | chr1_2:54337573-54337592 | None:intergenic | 45.0% | |
| TCATGACTCGTCCCAAATGT+AGG | - | chr1_2:54337580-54337599 | Msa0077430:intron | 45.0% | |
| AGAAACCTTAGGAGAATCGG+TGG | + | chr1_2:54337700-54337719 | None:intergenic | 45.0% | |
| ! | AGAACCCATGGACTAAGAGA+GGG | + | chr1_2:54337825-54337844 | None:intergenic | 45.0% |
| ! | AAGAACCCATGGACTAAGAG+AGG | + | chr1_2:54337826-54337845 | None:intergenic | 45.0% |
| AGTCCATGGGTTCTTGATTC+AGG | - | chr1_2:54337831-54337850 | Msa0077430:intron | 45.0% | |
| GTAACCAGATGTAGTGAGAG+GGG | + | chr1_2:54337899-54337918 | None:intergenic | 45.0% | |
| GAAACACAGTCAACAGGCAT+TGG | - | chr1_2:54337949-54337968 | Msa0077430:intron | 45.0% | |
| ACTTTGCAGGATCGGATTTC+GGG | - | chr1_2:54338105-54338124 | Msa0077430:intron | 45.0% | |
| TAAGAGGGGAATCTGTGGTT+GGG | + | chr1_2:54338197-54338216 | None:intergenic | 45.0% | |
| !! | GGACCAACCTTTGAAGTTTG+AGG | + | chr1_2:54338251-54338270 | None:intergenic | 45.0% |
| ACACGACTCACAATGCAACT+CGG | + | chr1_2:54338292-54338311 | None:intergenic | 45.0% | |
| CATTGTGAGTCGTGTCAGTT+AGG | - | chr1_2:54338297-54338316 | Msa0077430:intron | 45.0% | |
| !! | GCTCGTTTATTGACTCGATC+GGG | + | chr1_2:54338345-54338364 | None:intergenic | 45.0% |
| GCCCATACACCTCAACAAAA+TGG | - | chr1_2:54338660-54338679 | Msa0077430:intron | 45.0% | |
| ! | CCCCATTTTGTTGAGGTGTA+TGG | + | chr1_2:54338665-54338684 | None:intergenic | 45.0% |
| AACAAAATGGGGTTGCCGAA+CGG | - | chr1_2:54338673-54338692 | Msa0077430:intron | 45.0% | |
| !! | TGTTCCGTTTCGTTTTTGGG+GGG | - | chr1_2:54338745-54338764 | Msa0077430:intron | 45.0% |
| TGATTACCTAAGACCGAGGA+AGG | + | chr1_2:54338809-54338828 | None:intergenic | 45.0% | |
| GACTTGATTACCTAAGACCG+AGG | + | chr1_2:54338813-54338832 | None:intergenic | 45.0% | |
| AGGTAATCAAGTCCCACACT+CGG | - | chr1_2:54338820-54338839 | Msa0077430:intron | 45.0% | |
| TAGGAAAAAGGACCGAGTGT+GGG | + | chr1_2:54338835-54338854 | None:intergenic | 45.0% | |
| TTAGGAAAAAGGACCGAGTG+TGG | + | chr1_2:54338836-54338855 | None:intergenic | 45.0% | |
| AACATGTGGACCCAAACACA+CGG | + | chr1_2:54338883-54338902 | None:intergenic | 45.0% | |
| !! | TCCTGGTCTTGACAAACTCT+CGG | - | chr1_2:54338919-54338938 | Msa0077430:intron | 45.0% |
| ! | ATTAGGTACCGTCGAAGAGT+AGG | + | chr1_2:54339010-54339029 | None:intergenic | 45.0% |
| ! | AAGTGGGTCAAGAGGTACAT+TGG | + | chr1_2:54339079-54339098 | None:intergenic | 45.0% |
| GTTGGCATATCATCCTGAAG+TGG | + | chr1_2:54339096-54339115 | None:intergenic | 45.0% | |
| GGAACAATATCAGACGAGGT+TGG | + | chr1_2:54339114-54339133 | None:intergenic | 45.0% | |
| !! | ACATAAATAGTGGACTCGGG+CGG | + | chr1_2:54339159-54339178 | None:intergenic | 45.0% |
| GGGAGGAGGAACATAAATAG+TGG | + | chr1_2:54339169-54339188 | None:intergenic | 45.0% | |
| TCTCCAAGAATGGTTGTAGG+AGG | + | chr1_2:54339198-54339217 | None:intergenic | 45.0% | |
| GGATCTCCAAGAATGGTTGT+AGG | + | chr1_2:54339201-54339220 | None:intergenic | 45.0% | |
| TGGTAAGTTTGAAGAGGTCG+TGG | + | chr1_2:54339243-54339262 | None:intergenic | 45.0% | |
| ! | CAGATGATGGTTGACGACAT+TGG | + | chr1_2:54339263-54339282 | None:intergenic | 45.0% |
| GGAACATGCACAACAGATGA+TGG | + | chr1_2:54339276-54339295 | None:intergenic | 45.0% | |
| GACACCTATTCCAGATACTG+AGG | - | chr1_2:54339296-54339315 | Msa0077430:intron | 45.0% | |
| ! | ATGGCCTCAGTATCTGGAAT+AGG | + | chr1_2:54339303-54339322 | None:intergenic | 45.0% |
| ! | TGAGGAGATGGATTTCGAGT+AGG | + | chr1_2:54339405-54339424 | None:intergenic | 45.0% |
| AATGCCTCTCCTGGAGATTT+AGG | + | chr1_2:54339504-54339523 | None:intergenic | 45.0% | |
| TCATTGCTTGTCTCCACTCA+GGG | + | chr1_2:54339533-54339552 | None:intergenic | 45.0% | |
| ATCATTGCTTGTCTCCACTC+AGG | + | chr1_2:54339534-54339553 | None:intergenic | 45.0% | |
| ATGTGTGCTCTCCAAAGTAG+TGG | - | chr1_2:54339561-54339580 | Msa0077430:intron | 45.0% | |
| TCTCCAAAGTAGTGGCACTT+GGG | - | chr1_2:54339569-54339588 | Msa0077430:intron | 45.0% | |
| TTCTTTACCTCCCGGAAAGT+CGG | - | chr1_2:54339599-54339618 | Msa0077430:intron | 45.0% | |
| !! | ACAACCTACTACCGACTTTC+CGG | + | chr1_2:54339613-54339632 | None:intergenic | 45.0% |
| ! | TGATCGATTTAAGGCTCGCT+TGG | - | chr1_2:54339674-54339693 | Msa0077430:intron | 45.0% |
| AGCACAGTAGTGCAACAGTT+TGG | - | chr1_2:54339987-54340006 | Msa0077430:intron | 45.0% | |
| GAGTTTCAGACTAAGGACCT+TGG | - | chr1_2:54340154-54340173 | Msa0077430:intron | 45.0% | |
| !! | CATAGGAGTATCAACTGGCT+TGG | + | chr1_2:54340290-54340309 | None:intergenic | 45.0% |
| ! | CAAGCCAGTTGATACTCCTA+TGG | - | chr1_2:54340288-54340307 | Msa0077430:intron | 45.0% |
| !! | GGATCCATAGGAGTATCAAC+TGG | + | chr1_2:54340295-54340314 | None:intergenic | 45.0% |
| GCTTACCACACTAACTGCAA+AGG | + | chr1_2:54340425-54340444 | None:intergenic | 45.0% | |
| GCATTCATGTGTTCTTGGCA+AGG | + | chr1_2:54340463-54340482 | None:intergenic | 45.0% | |
| ! | GGGTATTGTGTACTTGTTGG+AGG | - | chr1_2:54340619-54340638 | Msa0077430:intron | 45.0% |
| TTGGAGGAAACCTGATATCC+TGG | - | chr1_2:54340635-54340654 | Msa0077430:intron | 45.0% | |
| !! | CAAGCGCTGAGGCAAAATAT+AGG | - | chr1_2:54340689-54340708 | Msa0077430:intron | 45.0% |
| TGAGGCAAAATATAGGGCCA+TGG | - | chr1_2:54340696-54340715 | Msa0077430:intron | 45.0% | |
| TTGGTCCTTGCATGGAACAT+TGG | + | chr1_2:54340841-54340860 | None:intergenic | 45.0% | |
| CGATATGTTTGGTCCTTGCA+TGG | + | chr1_2:54340849-54340868 | None:intergenic | 45.0% | |
| CAATCTTCTCTCTGACGAAG+TGG | + | chr1_2:54340882-54340901 | None:intergenic | 45.0% | |
| GAGAATATCACGATGAGCCA+CGG | + | chr1_2:54342001-54342020 | None:intergenic | 45.0% | |
| ! | GGTTATAGTCTTGGGTATGC+TGG | + | chr1_2:54342458-54342477 | None:intergenic | 45.0% |
| GTAGACCCTGGTATAAGAGA+TGG | - | chr1_2:54342577-54342596 | Msa0077430:intron | 45.0% | |
| TGCCTCCATCTCTTATACCA+GGG | + | chr1_2:54342585-54342604 | None:intergenic | 45.0% | |
| TTGCCTCCATCTCTTATACC+AGG | + | chr1_2:54342586-54342605 | None:intergenic | 45.0% | |
| ATAAGAGATGGAGGCAATGC+CGG | - | chr1_2:54342589-54342608 | Msa0077430:intron | 45.0% | |
| GCTCAACATCATGTAACTGC+TGG | - | chr1_2:54342645-54342664 | Msa0077430:intron | 45.0% | |
| TTCGGAGATTCCATTCCTGA+TGG | - | chr1_2:54342758-54342777 | Msa0077430:CDS | 45.0% | |
| CGCGTTGAAAACAGAACCTT+AGG | - | chr1_2:54342834-54342853 | Msa0077430:intron | 45.0% | |
| TGCATAAGTGGCAGGAAGTA+TGG | - | chr1_2:54342875-54342894 | Msa0077430:intron | 45.0% | |
| AGTTGCTATCAAGAAGGCCT+AGG | - | chr1_2:54343346-54343365 | Msa0077430:five_prime_UTR | 45.0% | |
| !!! | TCATTTTTTTATTTTTTTTT+TGG | - | chr1_2:54341216-54341235 | Msa0077430:intron | 5.0% |
| !! | TAATTATTTACTATATATTT+AGG | + | chr1_2:54341360-54341379 | None:intergenic | 5.0% |
| !! | AATAAATAAAAAATTCAATA+TGG | + | chr1_2:54342985-54343004 | None:intergenic | 5.0% |
| ! | ACAATAGCGGAGACAGACCA+AGG | - | chr1_2:54334439-54334458 | Msa0077430:CDS | 50.0% |
| GCTTCATCCTCTCAGAACCA+AGG | - | chr1_2:54334525-54334544 | Msa0077430:intron | 50.0% | |
| GCTGTTGCACAGAAGCTTTC+TGG | - | chr1_2:54334675-54334694 | Msa0077430:intron | 50.0% | |
| ATGTCCAAAGGGTCCTGCAT+AGG | + | chr1_2:54335030-54335049 | None:intergenic | 50.0% | |
| !! | GGTGGGTTACACAACACAAG+AGG | + | chr1_2:54335482-54335501 | None:intergenic | 50.0% |
| TCCCGGAGGAGAGCAATATA+AGG | - | chr1_2:54335959-54335978 | Msa0077430:intron | 50.0% | |
| !! | GTTGGTTTGCAGGAAGACCT+TGG | - | chr1_2:54336382-54336401 | Msa0077430:intron | 50.0% |
| ACGCCGTCAACTGAACAGTA+GGG | + | chr1_2:54336440-54336459 | None:intergenic | 50.0% | |
| AACCCTACACCGTGATTACC+CGG | - | chr1_2:54336991-54337010 | Msa0077430:intron | 50.0% | |
| GGCAAACCGTGTTTCATCTC+CGG | - | chr1_2:54337051-54337070 | Msa0077430:intron | 50.0% | |
| GGCAAACCGGAGATGAAACA+CGG | + | chr1_2:54337060-54337079 | None:intergenic | 50.0% | |
| CAATAAAGGAGGGGGCAAAC+CGG | + | chr1_2:54337073-54337092 | None:intergenic | 50.0% | |
| GCACTTTCCAGGCACTATTC+CGG | - | chr1_2:54337161-54337180 | Msa0077430:intron | 50.0% | |
| TATCTTGCCGGAATAGTGCC+TGG | + | chr1_2:54337171-54337190 | None:intergenic | 50.0% | |
| !! | GGATGGTGGTGTTATCTTGC+CGG | + | chr1_2:54337183-54337202 | None:intergenic | 50.0% |
| ! | GATGGTGATTTTCCGGAAGC+AGG | + | chr1_2:54337227-54337246 | None:intergenic | 50.0% |
| ! | GAAGCGGTGTTGAAACTGTC+CGG | + | chr1_2:54337491-54337510 | None:intergenic | 50.0% |
| CGCTCTTCACGTCCTTTGAT+TGG | - | chr1_2:54337654-54337673 | Msa0077430:intron | 50.0% | |
| GTCACCCTCTCTTAGTCCAT+GGG | - | chr1_2:54337818-54337837 | Msa0077430:intron | 50.0% | |
| GCACCTGAATCAAGAACCCA+TGG | + | chr1_2:54337837-54337856 | None:intergenic | 50.0% | |
| GGTTCCGAAACACAGTCAAC+AGG | - | chr1_2:54337943-54337962 | Msa0077430:intron | 50.0% | |
| GGCGTCAGATGTGAGTCTAA+TGG | - | chr1_2:54338138-54338157 | Msa0077430:intron | 50.0% | |
| GTAAGAGGGGAATCTGTGGT+TGG | + | chr1_2:54338198-54338217 | None:intergenic | 50.0% | |
| GAGTGGAGATATGACGCGAA+GGG | + | chr1_2:54338407-54338426 | None:intergenic | 50.0% | |
| AGAGTGGAGATATGACGCGA+AGG | + | chr1_2:54338408-54338427 | None:intergenic | 50.0% | |
| ! | TCGGCAACCCCATTTTGTTG+AGG | + | chr1_2:54338672-54338691 | None:intergenic | 50.0% |
| GCATCCCCCCAAAAACGAAA+CGG | + | chr1_2:54338752-54338771 | None:intergenic | 50.0% | |
| TTGGGGGGATGCTGTTCTAA+CGG | - | chr1_2:54338760-54338779 | Msa0077430:intron | 50.0% | |
| GGGTGGAAGTGAGTGTAAAG+GGG | + | chr1_2:54338861-54338880 | None:intergenic | 50.0% | |
| GGGGTGGAAGTGAGTGTAAA+GGG | + | chr1_2:54338862-54338881 | None:intergenic | 50.0% | |
| ACATGTGGACCCAAACACAC+GGG | + | chr1_2:54338882-54338901 | None:intergenic | 50.0% | |
| GCTACTCTCCTACTCTTCGA+CGG | - | chr1_2:54338999-54339018 | Msa0077430:intron | 50.0% | |
| TGTACCTCTTGACCCACTTC+AGG | - | chr1_2:54339080-54339099 | Msa0077430:intron | 50.0% | |
| TCATCCTGAAGTGGGTCAAG+AGG | + | chr1_2:54339087-54339106 | None:intergenic | 50.0% | |
| GAGCCTCCTACAACCATTCT+TGG | - | chr1_2:54339192-54339211 | Msa0077430:intron | 50.0% | |
| CATTCTTGGAGATCCTCCTG+CGG | - | chr1_2:54339206-54339225 | Msa0077430:intron | 50.0% | |
| GTTTGAAGAGGTCGTGGAGT+GGG | + | chr1_2:54339237-54339256 | None:intergenic | 50.0% | |
| AGTTTGAAGAGGTCGTGGAG+TGG | + | chr1_2:54339238-54339257 | None:intergenic | 50.0% | |
| ! | TCTGGAATGGCCTCAGTATC+TGG | + | chr1_2:54339309-54339328 | None:intergenic | 50.0% |
| CGACAAAGGAGAGTCTGGAA+TGG | + | chr1_2:54339322-54339341 | None:intergenic | 50.0% | |
| TCTGTAGTCGGATCCGGTAA+AGG | + | chr1_2:54339351-54339370 | None:intergenic | 50.0% | |
| GGAACATCTGTAGTCGGATC+CGG | + | chr1_2:54339357-54339376 | None:intergenic | 50.0% | |
| AGGCATTATCTCACCCTGAG+TGG | - | chr1_2:54339517-54339536 | Msa0077430:intron | 50.0% | |
| CTCTCCAAAGTAGTGGCACT+TGG | - | chr1_2:54339568-54339587 | Msa0077430:intron | 50.0% | |
| ! | GTTCCCAAGTGCCACTACTT+TGG | + | chr1_2:54339575-54339594 | None:intergenic | 50.0% |
| !! | CAACCTACTACCGACTTTCC+GGG | + | chr1_2:54339612-54339631 | None:intergenic | 50.0% |
| AGTCGGTAGTAGGTTGTCGT+TGG | - | chr1_2:54339616-54339635 | Msa0077430:intron | 50.0% | |
| ! | TCGATTTAAGGCTCGCTTGG+TGG | - | chr1_2:54339677-54339696 | Msa0077430:intron | 50.0% |
| ATTCTCTCCGGTCGCCAAAA+TGG | - | chr1_2:54339743-54339762 | Msa0077430:intron | 50.0% | |
| !!! | ACAGATGCCATTTTGGCGAC+CGG | + | chr1_2:54339753-54339772 | None:intergenic | 50.0% |
| !! | ACCACATGGGTTTGTTGCTC+AGG | - | chr1_2:54339881-54339900 | Msa0077430:intron | 50.0% |
| !! | CCACATGGGTTTGTTGCTCA+GGG | - | chr1_2:54339882-54339901 | Msa0077430:intron | 50.0% |
| !! | CACATGGGTTTGTTGCTCAG+GGG | - | chr1_2:54339883-54339902 | Msa0077430:intron | 50.0% |
| !! | ACATGGGTTTGTTGCTCAGG+GGG | - | chr1_2:54339884-54339903 | Msa0077430:intron | 50.0% |
| TCTATGCAGCCGACAAACCA+TGG | + | chr1_2:54339919-54339938 | None:intergenic | 50.0% | |
| CGGCTGCATAGATCCCTTTA+TGG | - | chr1_2:54339927-54339946 | Msa0077430:intron | 50.0% | |
| CAATCTCCTCGAGCTTGGTT+TGG | - | chr1_2:54339957-54339976 | Msa0077430:intron | 50.0% | |
| AATCTGCCAAACCAAGCTCG+AGG | + | chr1_2:54339966-54339985 | None:intergenic | 50.0% | |
| GAGGTAACCCAATCCAAGGA+TGG | - | chr1_2:54340202-54340221 | Msa0077430:intron | 50.0% | |
| GATAAAGGCTCCCCCTGATT+AGG | + | chr1_2:54340334-54340353 | None:intergenic | 50.0% | |
| GGGGAGCCTTTATCAGATTC+AGG | - | chr1_2:54340340-54340359 | Msa0077430:intron | 50.0% | |
| !! | ATCAAAGGTGCTCCGGGAAA+AGG | - | chr1_2:54340505-54340524 | Msa0077430:intron | 50.0% |
| ! | TACTCAGATGTTGACTGGGC+AGG | - | chr1_2:54340568-54340587 | Msa0077430:intron | 50.0% |
| ! | AGTTGCAAGATCAAGCGCTG+AGG | - | chr1_2:54340678-54340697 | Msa0077430:intron | 50.0% |
| ATCAACACTCCCCATCAAGC+TGG | + | chr1_2:54341033-54341052 | None:intergenic | 50.0% | |
| GACACGTGGCACCTCATTTA+GGG | + | chr1_2:54341198-54341217 | None:intergenic | 50.0% | |
| TGACACGTGGCACCTCATTT+AGG | + | chr1_2:54341199-54341218 | None:intergenic | 50.0% | |
| ! | GGGGTTGTAACCGCAAGTTT+TGG | - | chr1_2:54341305-54341324 | Msa0077430:intron | 50.0% |
| CGTGTGTCTGAATAGCGCAA+CGG | + | chr1_2:54336907-54336926 | None:intergenic | 50.0% | |
| CGTTGCGCTATTCAGACACA+CGG | - | chr1_2:54341505-54341524 | Msa0077430:intron | 50.0% | |
| TGCACCATAAGGTGGTTCTC+TGG | - | chr1_2:54341866-54341885 | Msa0077430:intron | 50.0% | |
| CACCCGATGGTGACTTATGT+TGG | + | chr1_2:54342216-54342235 | None:intergenic | 50.0% | |
| GTGATTGTCGACGGTAAGAG+AGG | - | chr1_2:54342233-54342252 | Msa0077430:intron | 50.0% | |
| GACCCTGGTATAAGAGATGG+AGG | - | chr1_2:54342580-54342599 | Msa0077430:intron | 50.0% | |
| ACATCATGTAACTGCTGGGG+AGG | - | chr1_2:54342650-54342669 | Msa0077430:intron | 50.0% | |
| GGAGATTCCATTCCTGATGG+TGG | - | chr1_2:54342761-54342780 | Msa0077430:CDS | 50.0% | |
| GTTAGCTCCACCATCAGGAA+TGG | + | chr1_2:54342771-54342790 | None:intergenic | 50.0% | |
| !! | CCTGATGGTGGAGCTAACTT+CGG | - | chr1_2:54342773-54342792 | Msa0077430:intron | 50.0% |
| TTTCCAGTGGCTACTGATGG+TGG | - | chr1_2:54342911-54342930 | Msa0077430:intron | 50.0% | |
| AGCGACATTGTCAGAACCTG+CGG | - | chr1_2:54342954-54342973 | Msa0077430:intron | 50.0% | |
| TTCGCCTATGCAGGACCCTT+TGG | - | chr1_2:54335023-54335042 | Msa0077430:intron | 55.0% | |
| CACGCCGTCAACTGAACAGT+AGG | + | chr1_2:54336441-54336460 | None:intergenic | 55.0% | |
| CTACTGTTCAGTTGACGGCG+TGG | - | chr1_2:54336439-54336458 | Msa0077430:intron | 55.0% | |
| TGTTCAGTTGACGGCGTGGA+AGG | - | chr1_2:54336443-54336462 | Msa0077430:intron | 55.0% | |
| AGTTGACGGCGTGGAAGGTA+TGG | - | chr1_2:54336448-54336467 | Msa0077430:intron | 55.0% | |
| CACCGGGTAATCACGGTGTA+GGG | + | chr1_2:54336996-54337015 | None:intergenic | 55.0% | |
| TGGACCCACTGCATGTCCTT+CGG | - | chr1_2:54337014-54337033 | Msa0077430:intron | 55.0% | |
| CTCACCGAAGGACATGCAGT+GGG | + | chr1_2:54337021-54337040 | None:intergenic | 55.0% | |
| TCTCACCGAAGGACATGCAG+TGG | + | chr1_2:54337022-54337041 | None:intergenic | 55.0% | |
| TGGCTGTTCTGGCCGGAAAA+GGG | + | chr1_2:54337124-54337143 | None:intergenic | 55.0% | |
| ! | CCTGGAAAGTGCGATTCTGG+CGG | + | chr1_2:54337153-54337172 | None:intergenic | 55.0% |
| ! | GTGCCTGGAAAGTGCGATTC+TGG | + | chr1_2:54337156-54337175 | None:intergenic | 55.0% |
| TTTCCGGAAGCAGGCCGATA+CGG | + | chr1_2:54337218-54337237 | None:intergenic | 55.0% | |
| GAGAGAAAAGAGACGCGTGC+GGG | + | chr1_2:54337267-54337286 | None:intergenic | 55.0% | |
| GGAGAGAAAAGAGACGCGTG+CGG | + | chr1_2:54337268-54337287 | None:intergenic | 55.0% | |
| AGGAGAATCGGTGGTCCGAA+TGG | + | chr1_2:54337691-54337710 | None:intergenic | 55.0% | |
| !! | TCGGACCACCGATTCTCCTA+AGG | - | chr1_2:54337692-54337711 | Msa0077430:intron | 55.0% |
| GGTGTGAGCTCGCGAAATAG+CGG | + | chr1_2:54337772-54337791 | None:intergenic | 55.0% | |
| ! | GCTATTTCGCGAGCTCACAC+CGG | - | chr1_2:54337771-54337790 | Msa0077430:intron | 55.0% |
| CGTCACCCTCTCTTAGTCCA+TGG | - | chr1_2:54337817-54337836 | Msa0077430:intron | 55.0% | |
| TCCTCCCCTCTCACTACATC+TGG | - | chr1_2:54337892-54337911 | Msa0077430:intron | 55.0% | |
| ACCAGATGTAGTGAGAGGGG+AGG | + | chr1_2:54337896-54337915 | None:intergenic | 55.0% | |
| TGCAGGATCGGATTTCGGGA+CGG | - | chr1_2:54338109-54338128 | Msa0077430:intron | 55.0% | |
| CGGATTTCGGGACGGCAAAT+TGG | - | chr1_2:54338117-54338136 | Msa0077430:intron | 55.0% | |
| TGGTTGGGCATGCCGTTGAT+GGG | + | chr1_2:54338182-54338201 | None:intergenic | 55.0% | |
| AAGGGCCCCAGACATCAGAA+TGG | + | chr1_2:54338389-54338408 | None:intergenic | 55.0% | |
| CGGGGTGGAAGTGAGTGTAA+AGG | + | chr1_2:54338863-54338882 | None:intergenic | 55.0% | |
| TCACTTCCACCCCGTGTGTT+TGG | - | chr1_2:54338869-54338888 | Msa0077430:intron | 55.0% | |
| CACTTCCACCCCGTGTGTTT+GGG | - | chr1_2:54338870-54338889 | Msa0077430:intron | 55.0% | |
| CATGTGGACCCAAACACACG+GGG | + | chr1_2:54338881-54338900 | None:intergenic | 55.0% | |
| GCCGAGAGTTTGTCAAGACC+AGG | + | chr1_2:54338923-54338942 | None:intergenic | 55.0% | |
| TCGGGCGGAACAGACACAAT+AGG | + | chr1_2:54339144-54339163 | None:intergenic | 55.0% | |
| ATGGTTGTAGGAGGCTCCGT+GGG | + | chr1_2:54339189-54339208 | None:intergenic | 55.0% | |
| AATGGTTGTAGGAGGCTCCG+TGG | + | chr1_2:54339190-54339209 | None:intergenic | 55.0% | |
| CGCAGGAGGATCTCCAAGAA+TGG | + | chr1_2:54339208-54339227 | None:intergenic | 55.0% | |
| TTTGTCGCCACCGCCTTTAC+CGG | - | chr1_2:54339335-54339354 | Msa0077430:intron | 55.0% | |
| GTAGTCGGATCCGGTAAAGG+CGG | + | chr1_2:54339348-54339367 | None:intergenic | 55.0% | |
| GGGTGAGATAATGCCTCTCC+TGG | + | chr1_2:54339513-54339532 | None:intergenic | 55.0% | |
| ACGGTGAAAGTTGGCCCTGA+TGG | - | chr1_2:54339645-54339664 | Msa0077430:intron | 55.0% | |
| CCCTGAGCAACAAACCCATG+TGG | + | chr1_2:54339885-54339904 | None:intergenic | 55.0% | |
| TCAGGGGGAGTCATCTACCA+TGG | - | chr1_2:54339899-54339918 | Msa0077430:intron | 55.0% | |
| ! | GGGGCTGTAACCGCAAGTTT+TGG | + | chr1_2:54341099-54341118 | None:intergenic | 55.0% |
| CGGACGTGACACCCTAAATG+AGG | - | chr1_2:54341184-54341203 | Msa0077430:CDS | 55.0% | |
| CACCATCGGGTGATTGTCGA+CGG | - | chr1_2:54342224-54342243 | Msa0077430:intron | 55.0% | |
| TACCGTCGACAATCACCCGA+TGG | + | chr1_2:54342229-54342248 | None:intergenic | 55.0% | |
| ACCACCTCATTGATCGCCAG+CGG | - | chr1_2:54342367-54342386 | Msa0077430:intron | 55.0% | |
| TTTCCCGCTGGCGATCAATG+AGG | + | chr1_2:54342374-54342393 | None:intergenic | 55.0% | |
| GGTAAACTGAGGGTAGACCC+TGG | - | chr1_2:54342565-54342584 | Msa0077430:intron | 55.0% | |
| GGCAATGCCGGTGCATGAAA+CGG | - | chr1_2:54342601-54342620 | Msa0077430:intron | 55.0% | |
| AATGCCGGTGCATGAAACGG+TGG | - | chr1_2:54342604-54342623 | Msa0077430:intron | 55.0% | |
| CTGACCACCGTTTCATGCAC+CGG | + | chr1_2:54342611-54342630 | None:intergenic | 55.0% | |
| GCGCGTGTGAGCACATGATT+GGG | - | chr1_2:54342703-54342722 | Msa0077430:CDS | 55.0% | |
| CCGAAGTTAGCTCCACCATC+AGG | + | chr1_2:54342776-54342795 | None:intergenic | 55.0% | |
| TTGCCACCATCAGTAGCCAC+TGG | + | chr1_2:54342917-54342936 | None:intergenic | 55.0% | |
| TTCTGACAATGTCGCTGGCG+AGG | + | chr1_2:54342950-54342969 | None:intergenic | 55.0% | |
| ! | GCAGGTTCTGACAATGTCGC+TGG | + | chr1_2:54342955-54342974 | None:intergenic | 55.0% |
| CCACCGGGTAATCACGGTGT+AGG | + | chr1_2:54336997-54337016 | None:intergenic | 60.0% | |
| CCTACACCGTGATTACCCGG+TGG | - | chr1_2:54336994-54337013 | Msa0077430:intron | 60.0% | |
| GTGGGTCCACCGGGTAATCA+CGG | + | chr1_2:54337003-54337022 | None:intergenic | 60.0% | |
| AGGACATGCAGTGGGTCCAC+CGG | + | chr1_2:54337013-54337032 | None:intergenic | 60.0% | |
| GTGGCTGTTCTGGCCGGAAA+AGG | + | chr1_2:54337125-54337144 | None:intergenic | 60.0% | |
| ! | GGAAAGTGCGATTCTGGCGG+CGG | + | chr1_2:54337150-54337169 | None:intergenic | 60.0% |
| CCGCCAGAATCGCACTTTCC+AGG | - | chr1_2:54337150-54337169 | Msa0077430:intron | 60.0% | |
| TACGGACGAGACGAAGCGGA+TGG | + | chr1_2:54337200-54337219 | None:intergenic | 60.0% | |
| CCGATACGGACGAGACGAAG+CGG | + | chr1_2:54337204-54337223 | None:intergenic | 60.0% | |
| CCGCTTCGTCTCGTCCGTAT+CGG | - | chr1_2:54337201-54337220 | Msa0077430:intron | 60.0% | |
| GTCACGCGCGGTGGAAAAAG+CGG | + | chr1_2:54337309-54337328 | None:intergenic | 60.0% | |
| !! | GCTTTTTCCACCGCGCGTGA+CGG | - | chr1_2:54337308-54337327 | Msa0077430:intron | 60.0% |
| GCACTTCCCACCTCCGTTCA+GGG | - | chr1_2:54337330-54337349 | Msa0077430:intron | 60.0% | |
| TTCGAGTCTGGCGAGAGCAG+CGG | + | chr1_2:54337358-54337377 | None:intergenic | 60.0% | |
| GTGGTTGGGCATGCCGTTGA+TGG | + | chr1_2:54338183-54338202 | None:intergenic | 60.0% | |
| CGCATGCCTTCCTCGGTCTT+AGG | - | chr1_2:54338800-54338819 | Msa0077430:intron | 60.0% | |
| TGAAGAGGTCGTGGAGTGGG+AGG | + | chr1_2:54339234-54339253 | None:intergenic | 60.0% | |
| GGTGGCGACAAAGGAGAGTC+TGG | + | chr1_2:54339327-54339346 | None:intergenic | 60.0% | |
| GGTAAAGGCGGTGGCGACAA+AGG | + | chr1_2:54339336-54339355 | None:intergenic | 60.0% | |
| !! | CCTACTACCGACTTTCCGGG+AGG | + | chr1_2:54339609-54339628 | None:intergenic | 60.0% |
| CCTCCCGGAAAGTCGGTAGT+AGG | - | chr1_2:54339606-54339625 | Msa0077430:intron | 60.0% | |
| ! | TAAGGCTCGCTTGGTGGCCA+AGG | - | chr1_2:54339683-54339702 | Msa0077430:intron | 60.0% |
| ! | AAGGCTCGCTTGGTGGCCAA+GGG | - | chr1_2:54339684-54339703 | Msa0077430:intron | 60.0% |
| ! | TAGGGTGTCACGTCCGCGTT+GGG | + | chr1_2:54341180-54341199 | None:intergenic | 60.0% |
| ! | TTAGGGTGTCACGTCCGCGT+TGG | + | chr1_2:54341181-54341200 | None:intergenic | 60.0% |
| !! | TTGGCAGTTTTGGCCCCCCA+AGG | + | chr1_2:54341242-54341261 | None:intergenic | 60.0% |
| CCACCTCATTGATCGCCAGC+GGG | - | chr1_2:54342368-54342387 | Msa0077430:intron | 60.0% | |
| GGCGCGTGTGAGCACATGAT+TGG | - | chr1_2:54342702-54342721 | Msa0077430:CDS | 60.0% | |
| !! | AGGAGAGTACCCCTGCACTG+CGG | - | chr1_2:54342805-54342824 | Msa0077430:intron | 60.0% |
| GGACATGCAGTGGGTCCACC+GGG | + | chr1_2:54337012-54337031 | None:intergenic | 65.0% | |
| GGACGAGACGAAGCGGATGG+TGG | + | chr1_2:54337197-54337216 | None:intergenic | 65.0% | |
| ! | CGTCCGTATCGGCCTGCTTC+CGG | - | chr1_2:54337212-54337231 | Msa0077430:intron | 65.0% |
| GCGCGTTGCGACGTTTCGGA+TGG | + | chr1_2:54337245-54337264 | None:intergenic | 65.0% | |
| CGGTGGAAAAAGCGGCGCGT+GGG | + | chr1_2:54337301-54337320 | None:intergenic | 65.0% | |
| GGCACTTCCCACCTCCGTTC+AGG | - | chr1_2:54337329-54337348 | Msa0077430:intron | 65.0% | |
| GAGAGCAGCGGCACCCTGAA+CGG | + | chr1_2:54337346-54337365 | None:intergenic | 65.0% | |
| GTGGACCCAAACACACGGGG+TGG | + | chr1_2:54338878-54338897 | None:intergenic | 65.0% | |
| GTTGTAGGAGGCTCCGTGGG+AGG | + | chr1_2:54339186-54339205 | None:intergenic | 65.0% | |
| GTCGGATCCGGTAAAGGCGG+TGG | + | chr1_2:54339345-54339364 | None:intergenic | 65.0% | |
| !! | GGCAGTTTTGGCCCCCAACG+CGG | - | chr1_2:54341164-54341183 | Msa0077430:CDS | 65.0% |
| ! | AGGGTGTCACGTCCGCGTTG+GGG | + | chr1_2:54341179-54341198 | None:intergenic | 65.0% |
| CCCGCTGGCGATCAATGAGG+TGG | + | chr1_2:54342371-54342390 | None:intergenic | 65.0% | |
| !! | GGAGAGTACCCCTGCACTGC+GGG | - | chr1_2:54342806-54342825 | Msa0077430:intron | 65.0% |
| !! | GAGAGTACCCCTGCACTGCG+GGG | - | chr1_2:54342807-54342826 | Msa0077430:intron | 65.0% |
| ! | AGAGTACCCCTGCACTGCGG+GGG | - | chr1_2:54342808-54342827 | Msa0077430:intron | 65.0% |
| GCGGCAGTGGCTGTTCTGGC+CGG | + | chr1_2:54337131-54337150 | None:intergenic | 70.0% | |
| TGCGATTCTGGCGGCGGCAG+TGG | + | chr1_2:54337144-54337163 | None:intergenic | 70.0% | |
| GCGGGCGCGTTGCGACGTTT+CGG | + | chr1_2:54337249-54337268 | None:intergenic | 70.0% | |
| GCGGTGGAAAAAGCGGCGCG+TGG | + | chr1_2:54337302-54337321 | None:intergenic | 70.0% | |
| !! | GTGGGAAGTGCCGTCACGCG+CGG | + | chr1_2:54337321-54337340 | None:intergenic | 70.0% |
| GCGGCACCCTGAACGGAGGT+GGG | + | chr1_2:54337339-54337358 | None:intergenic | 70.0% | |
| AGCGGCACCCTGAACGGAGG+TGG | + | chr1_2:54337340-54337359 | None:intergenic | 70.0% | |
| AGCAGCGGCACCCTGAACGG+AGG | + | chr1_2:54337343-54337362 | None:intergenic | 70.0% | |
| GTAGGAGGCTCCGTGGGAGG+AGG | + | chr1_2:54339183-54339202 | None:intergenic | 70.0% | |
| ! | GGGTGTCACGTCCGCGTTGG+GGG | + | chr1_2:54341178-54341197 | None:intergenic | 70.0% |
| GGCGGCGGCAGTGGCTGTTC+TGG | + | chr1_2:54337135-54337154 | None:intergenic | 75.0% | |
| CGGCGCGTGGGAGTTTGCGC+TGG | + | chr1_2:54337289-54337308 | None:intergenic | 75.0% | |
| !! | GGAAGTGCCGTCACGCGCGG+TGG | + | chr1_2:54337318-54337337 | None:intergenic | 75.0% |
| GGAGTGGGAGGCTCCGCAGG+AGG | + | chr1_2:54339222-54339241 | None:intergenic | 75.0% | |
| CGTGGAGTGGGAGGCTCCGC+AGG | + | chr1_2:54339225-54339244 | None:intergenic | 75.0% | |
| ! | GCGGCTCCCCCGCAGTGCAG+GGG | + | chr1_2:54342817-54342836 | None:intergenic | 80.0% |
| ! | CGCGGCTCCCCCGCAGTGCA+GGG | + | chr1_2:54342818-54342837 | None:intergenic | 80.0% |
| ! | ACGCGGCTCCCCCGCAGTGC+AGG | + | chr1_2:54342819-54342838 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 54334367 | 54343430 | 54334367 | ID=Msa0077430;Name=Msa0077430 |
| chr1_2 | mRNA | 54334367 | 54343430 | 54334367 | ID=Msa0077430-mRNA-1;Parent=Msa0077430;Name=Msa0077430-mRNA-1;_AED=0.06;_eAED=0.06;_QI=108|1|1|1|0.83|0.71|7|63|187 |
| chr1_2 | exon | 54334367 | 54334487 | 54334367 | ID=Msa0077430-mRNA-1:exon:16801;Parent=Msa0077430-mRNA-1 |
| chr1_2 | exon | 54341149 | 54341234 | 54341149 | ID=Msa0077430-mRNA-1:exon:16800;Parent=Msa0077430-mRNA-1 |
| chr1_2 | exon | 54341333 | 54341403 | 54341333 | ID=Msa0077430-mRNA-1:exon:16799;Parent=Msa0077430-mRNA-1 |
| chr1_2 | exon | 54342455 | 54342530 | 54342455 | ID=Msa0077430-mRNA-1:exon:16798;Parent=Msa0077430-mRNA-1 |
| chr1_2 | exon | 54342682 | 54342783 | 54342682 | ID=Msa0077430-mRNA-1:exon:16797;Parent=Msa0077430-mRNA-1 |
| chr1_2 | exon | 54343060 | 54343158 | 54343060 | ID=Msa0077430-mRNA-1:exon:16796;Parent=Msa0077430-mRNA-1 |
| chr1_2 | exon | 54343251 | 54343430 | 54343251 | ID=Msa0077430-mRNA-1:exon:16795;Parent=Msa0077430-mRNA-1 |
| chr1_2 | five_prime_UTR | 54343323 | 54343430 | 54343323 | ID=Msa0077430-mRNA-1:five_prime_utr;Parent=Msa0077430-mRNA-1 |
| chr1_2 | CDS | 54343251 | 54343322 | 54343251 | ID=Msa0077430-mRNA-1:cds;Parent=Msa0077430-mRNA-1 |
| chr1_2 | CDS | 54343060 | 54343158 | 54343060 | ID=Msa0077430-mRNA-1:cds;Parent=Msa0077430-mRNA-1 |
| chr1_2 | CDS | 54342682 | 54342783 | 54342682 | ID=Msa0077430-mRNA-1:cds;Parent=Msa0077430-mRNA-1 |
| chr1_2 | CDS | 54342455 | 54342530 | 54342455 | ID=Msa0077430-mRNA-1:cds;Parent=Msa0077430-mRNA-1 |
| chr1_2 | CDS | 54341333 | 54341403 | 54341333 | ID=Msa0077430-mRNA-1:cds;Parent=Msa0077430-mRNA-1 |
| chr1_2 | CDS | 54341149 | 54341234 | 54341149 | ID=Msa0077430-mRNA-1:cds;Parent=Msa0077430-mRNA-1 |
| chr1_2 | CDS | 54334430 | 54334487 | 54334430 | ID=Msa0077430-mRNA-1:cds;Parent=Msa0077430-mRNA-1 |
| chr1_2 | three_prime_UTR | 54334367 | 54334429 | 54334367 | ID=Msa0077430-mRNA-1:three_prime_utr;Parent=Msa0077430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
