Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125260 | XP_003590816.1 | 77.005 | 187 | 10 | 1 | 1 | 154 | 1 | 187 | 2.76e-96 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125260 | sp|Q9ZS51|PMP22_ARATH | 47.191 | 178 | 61 | 1 | 10 | 154 | 12 | 189 | 4.58e-55 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125260 | G7I4T1 | 77.005 | 187 | 10 | 1 | 1 | 154 | 1 | 187 | 1.32e-96 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030050 | Msa0125260 | 0.854049 | 1.594130e-61 | -8.615850e-47 |
| Msa0077430 | Msa0125260 | 0.831263 | 1.843421e-55 | -8.615850e-47 |
| Msa0125260 | Msa0170060 | 0.816335 | 5.831640e-52 | -8.615850e-47 |
| Msa0125260 | Msa0618550 | 0.805005 | 1.644555e-49 | -8.615850e-47 |
| Msa0125260 | Msa0657340 | 0.803417 | 3.520594e-49 | -8.615850e-47 |
| Msa0125260 | Msa1254910 | 0.800633 | 1.315246e-48 | -8.615850e-47 |
| Msa0125260 | Msa1413150 | 0.801707 | 7.931338e-49 | -8.615850e-47 |
| Msa0125260 | Msa1429470 | 0.800198 | 1.612786e-48 | -8.615850e-47 |
| Msa0125260 | Msa1459920 | 0.800806 | 1.212254e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125260 | MtrunA17_Chr1g0187331 | 77.005 | 187 | 10 | 1 | 1 | 154 | 1 | 187 | 2.54e-100 | 286 |
| Msa0125260 | MtrunA17_Chr2g0288811 | 47.486 | 179 | 61 | 1 | 1 | 146 | 1 | 179 | 8.55e-59 | 181 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125260 | AT4G14305.1 | 64.246 | 179 | 31 | 1 | 1 | 146 | 1 | 179 | 1.53e-81 | 238 |
| Msa0125260 | AT4G14305.2 | 80.328 | 122 | 24 | 0 | 25 | 146 | 46 | 167 | 6.96e-74 | 219 |
| Msa0125260 | AT4G04470.1 | 47.191 | 178 | 61 | 1 | 10 | 154 | 12 | 189 | 4.66e-56 | 174 |
| Msa0125260 | AT4G04470.2 | 47.191 | 178 | 61 | 1 | 10 | 154 | 12 | 189 | 4.66e-56 | 174 |
Find 38 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTTTATCCATCAATAAA+TGG | 0.290399 | 1_3:-53704046 | None:intergenic |
| CAGAATAGTCTTCACACATT+TGG | 0.312204 | 1_3:+53707366 | Msa0125260:three_prime_UTR |
| AGAATAGTCTTCACACATTT+GGG | 0.361638 | 1_3:+53707367 | Msa0125260:three_prime_UTR |
| ACATTATCTCCATTTATTGA+TGG | 0.376713 | 1_3:+53704037 | Msa0125260:CDS |
| ATACCTTCCACGCCGTCAAC+TGG | 0.382299 | 1_3:-53705440 | None:intergenic |
| TTCGCCTATGCAGGACCCTT+TGG | 0.383790 | 1_3:+53704014 | Msa0125260:CDS |
| TATAATAAACAATATAAAAC+TGG | 0.387599 | 1_3:-53703293 | None:intergenic |
| TATTATGGCTTGATTATTGA+AGG | 0.419845 | 1_3:+53704313 | Msa0125260:CDS |
| CAATGAAACTGTTGCTAAGA+AGG | 0.429878 | 1_3:+53704085 | Msa0125260:CDS |
| TGTGAAGACTATTCTGTCCT+AGG | 0.466264 | 1_3:-53707359 | None:intergenic |
| GGAACTGCAAAGGCATATAC+TGG | 0.477910 | 1_3:-53705586 | None:intergenic |
| CTATCCTACTGTCCAGTTGA+CGG | 0.478021 | 1_3:+53705428 | Msa0125260:CDS |
| CATGGCGATTGATCAACCTT+TGG | 0.479918 | 1_3:-53703383 | None:intergenic |
| CTATATGGTTTCGCCTATGC+AGG | 0.488768 | 1_3:+53704005 | Msa0125260:CDS |
| CTGACAAAGTCAACGATGCT+TGG | 0.498624 | 1_3:+53703407 | Msa0125260:CDS |
| ACAGCTTTGTTGGTTCATGC+TGG | 0.506633 | 1_3:+53705621 | Msa0125260:CDS |
| GTTGGTTTGCAGGAAGACCT+TGG | 0.511703 | 1_3:+53705376 | Msa0125260:intron |
| AAATGGAGATAATGTCCAAA+GGG | 0.531298 | 1_3:-53704029 | None:intergenic |
| AGCAAATAACTAGTTCTCCA+TGG | 0.534969 | 1_3:+53704269 | Msa0125260:CDS |
| GAGAACTAGTTATTTGCTCA+AGG | 0.536726 | 1_3:-53704264 | None:intergenic |
| AGATGCTATCAAGAAGGCCT+AGG | 0.539313 | 1_3:+53707342 | Msa0125260:CDS |
| TGTCCAGTTGACGGCGTGGA+AGG | 0.546675 | 1_3:+53705437 | Msa0125260:CDS |
| ATCGTTGACTTTGTCAGACA+TGG | 0.551719 | 1_3:-53703401 | None:intergenic |
| TAGTCTTCACACATTTGGGA+TGG | 0.559951 | 1_3:+53707371 | Msa0125260:three_prime_UTR |
| GAGGATGAAGCTTAAGCTGA+AGG | 0.563374 | 1_3:-53703441 | None:intergenic |
| TTGTTCATGACTATATTCCA+AGG | 0.574186 | 1_3:-53705393 | None:intergenic |
| ATGTCCAAAGGGTCCTGCAT+AGG | 0.576071 | 1_3:-53704018 | None:intergenic |
| TCTTTCTGAATCTGAAAGCA+AGG | 0.580113 | 1_3:+53707311 | Msa0125260:CDS |
| ATCATCAGATGCTATCAAGA+AGG | 0.589306 | 1_3:+53707336 | Msa0125260:CDS |
| GCTTCATCCTCTCAGAACCA+AGG | 0.597074 | 1_3:+53703453 | Msa0125260:CDS |
| CACGCCGTCAACTGGACAGT+AGG | 0.614091 | 1_3:-53705432 | None:intergenic |
| TAAATGGAGATAATGTCCAA+AGG | 0.616169 | 1_3:-53704030 | None:intergenic |
| TAATTCACCCAACCAACGAT+AGG | 0.618119 | 1_3:-53705563 | None:intergenic |
| AATAAAACACGGAACTGCAA+AGG | 0.621872 | 1_3:-53705596 | None:intergenic |
| CTACTGTCCAGTTGACGGCG+TGG | 0.646340 | 1_3:+53705433 | Msa0125260:CDS |
| AATGAAACCTTGGTTCTGAG+AGG | 0.655224 | 1_3:-53703460 | None:intergenic |
| CAAAGCTGTGAAATAAAACA+CGG | 0.671747 | 1_3:-53705607 | None:intergenic |
| GACTAGCGGAGACAGACCAA+AGG | 0.742088 | 1_3:+53703367 | Msa0125260:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAAACAATATAAAAC+TGG | - | chr1_3:53703296-53703315 | None:intergenic | 10.0% |
| !! | ATAACATATAAAATTATTGA+TGG | - | chr1_3:53703774-53703793 | None:intergenic | 10.0% |
| !! | GAAATAAAAAAATTTCAATA+TGG | - | chr1_3:53706983-53707002 | None:intergenic | 10.0% |
| !! | CAATTAATACTAAATATTAG+AGG | - | chr1_3:53704525-53704544 | None:intergenic | 15.0% |
| !! | TCAAAATTATCAATGTTTAT+AGG | + | chr1_3:53704625-53704644 | Msa0125260:intron | 15.0% |
| !! | TAATGATTATTGTAAACTTA+GGG | - | chr1_3:53704662-53704681 | None:intergenic | 15.0% |
| !! | ATAATGATTATTGTAAACTT+AGG | - | chr1_3:53704663-53704682 | None:intergenic | 15.0% |
| !! | GAAAACATTTATAGAATAAA+AGG | + | chr1_3:53704817-53704836 | Msa0125260:intron | 15.0% |
| !!! | TGAAAATTGTTTTTATTAAG+TGG | - | chr1_3:53705297-53705316 | None:intergenic | 15.0% |
| !! | TAATGTCATATTTCTTATAA+AGG | + | chr1_3:53705805-53705824 | Msa0125260:intron | 15.0% |
| !! | AAATTAGTAAAATGAAACCT+TGG | - | chr1_3:53703473-53703492 | None:intergenic | 20.0% |
| !! | AAAGTTTATCCATCAATAAA+TGG | - | chr1_3:53704049-53704068 | None:intergenic | 20.0% |
| !! | GAATGAAATATCATATTACT+AGG | + | chr1_3:53704237-53704256 | Msa0125260:intron | 20.0% |
| !!! | TTTTTGTTCATGATGTATTA+TGG | + | chr1_3:53704298-53704317 | Msa0125260:CDS | 20.0% |
| !!! | ACATTGATAATTTTGAACTT+CGG | - | chr1_3:53704621-53704640 | None:intergenic | 20.0% |
| !! | TCATTATTTACAAGTCAATA+TGG | + | chr1_3:53704676-53704695 | Msa0125260:intron | 20.0% |
| !! | TTAACATTGAATTTAATTCC+CGG | + | chr1_3:53704934-53704953 | Msa0125260:intron | 20.0% |
| !! | ATAATGTATTATCAATAAGC+TGG | - | chr1_3:53705267-53705286 | None:intergenic | 20.0% |
| !!! | CAATTTGAATAGTTAGTTTT+TGG | + | chr1_3:53705501-53705520 | Msa0125260:intron | 20.0% |
| !!! | TAATGTTGATCCTTTTATAT+TGG | + | chr1_3:53705850-53705869 | Msa0125260:intron | 20.0% |
| !!! | AATGTTGATCCTTTTATATT+GGG | + | chr1_3:53705851-53705870 | Msa0125260:intron | 20.0% |
| !!! | TCACAATTTTTACTTAATCA+AGG | - | chr1_3:53705960-53705979 | None:intergenic | 20.0% |
| !! | GCAATTAAAATTCAAATTGA+GGG | - | chr1_3:53706020-53706039 | None:intergenic | 20.0% |
| !! | TGCAATTAAAATTCAAATTG+AGG | - | chr1_3:53706021-53706040 | None:intergenic | 20.0% |
| !!! | GAATATTATTTTGAGTATGA+TGG | - | chr1_3:53706099-53706118 | None:intergenic | 20.0% |
| !!! | TGTATCTAGTTTCAATATTT+TGG | + | chr1_3:53706243-53706262 | Msa0125260:intron | 20.0% |
| !! | TGTGAAAATGCATTATTATA+GGG | - | chr1_3:53706306-53706325 | None:intergenic | 20.0% |
| !! | ATGTGAAAATGCATTATTAT+AGG | - | chr1_3:53706307-53706326 | None:intergenic | 20.0% |
| !! | TTTCTAAATTATATCACACT+AGG | + | chr1_3:53707005-53707024 | Msa0125260:intron | 20.0% |
| !! | CACTAGGATATATTTATAAT+AGG | + | chr1_3:53707021-53707040 | Msa0125260:intron | 20.0% |
| !!! | TTTTCATACAGAAAAAAGTT+TGG | - | chr1_3:53707148-53707167 | None:intergenic | 20.0% |
| !! | ATGAATTATTTAGCAGTTAA+TGG | + | chr1_3:53707257-53707276 | Msa0125260:intron | 20.0% |
| ! | GATGAAGTAGAAGTTATTAT+AGG | + | chr1_3:53703920-53703939 | Msa0125260:intron | 25.0% |
| !!! | GAAGTTATTATAGGTTGATT+TGG | + | chr1_3:53703929-53703948 | Msa0125260:intron | 25.0% |
| !!! | CAAATTATTTTGCAGCTATA+TGG | + | chr1_3:53703990-53704009 | Msa0125260:intron | 25.0% |
| ! | ACATTATCTCCATTTATTGA+TGG | + | chr1_3:53704037-53704056 | Msa0125260:CDS | 25.0% |
| !!! | ATTGATGGATAAACTTTTCA+AGG | + | chr1_3:53704052-53704071 | Msa0125260:CDS | 25.0% |
| !!! | TTGATGGATAAACTTTTCAA+GGG | + | chr1_3:53704053-53704072 | Msa0125260:CDS | 25.0% |
| !! | TTTTCATAAAACAAGTACCA+GGG | - | chr1_3:53704209-53704228 | None:intergenic | 25.0% |
| !! | TTTTTCATAAAACAAGTACC+AGG | - | chr1_3:53704210-53704229 | None:intergenic | 25.0% |
| ! | TATTATGGCTTGATTATTGA+AGG | + | chr1_3:53704313-53704332 | Msa0125260:CDS | 25.0% |
| ! | TTGTTCGCAATATCATATTA+AGG | - | chr1_3:53704790-53704809 | None:intergenic | 25.0% |
| ! | TTACCTTACAAGTATATGAA+GGG | + | chr1_3:53704862-53704881 | Msa0125260:intron | 25.0% |
| ! | AATTTAAGAAAGTAAGGACT+TGG | - | chr1_3:53704896-53704915 | None:intergenic | 25.0% |
| ! | CAGAACAATTTAAGAAAGTA+AGG | - | chr1_3:53704902-53704921 | None:intergenic | 25.0% |
| !! | TAGATGAAGTTTAAGCTTTT+TGG | + | chr1_3:53705184-53705203 | Msa0125260:intron | 25.0% |
| ! | AACTATTCAAATTGTTCCAT+TGG | - | chr1_3:53705495-53705514 | None:intergenic | 25.0% |
| !!! | TTGAATAGTTAGTTTTTGGA+AGG | + | chr1_3:53705505-53705524 | Msa0125260:intron | 25.0% |
| !! | ATGATGCTTAATCGTTATTT+TGG | - | chr1_3:53705723-53705742 | None:intergenic | 25.0% |
| ! | AAATAACGATTAAGCATCAT+TGG | + | chr1_3:53705723-53705742 | Msa0125260:intron | 25.0% |
| ! | CATGCACTATAAATTACAAA+AGG | + | chr1_3:53705772-53705791 | Msa0125260:intron | 25.0% |
| !!! | TGAATTTTAATTGCACCATA+AGG | + | chr1_3:53706026-53706045 | Msa0125260:intron | 25.0% |
| !!! | ATCTAGTTTCAATATTTTGG+AGG | + | chr1_3:53706246-53706265 | Msa0125260:intron | 25.0% |
| ! | ACAGATAAATCATATTAGTC+GGG | - | chr1_3:53706431-53706450 | None:intergenic | 25.0% |
| ! | CACAGATAAATCATATTAGT+CGG | - | chr1_3:53706432-53706451 | None:intergenic | 25.0% |
| ! | CAATCATATATTCATACTAG+TGG | - | chr1_3:53706500-53706519 | None:intergenic | 25.0% |
| ! | TAAAAATCACAGATGGAAAA+AGG | + | chr1_3:53706847-53706866 | Msa0125260:intron | 25.0% |
| ! | TAATTGATATTGTGCAGTAA+AGG | + | chr1_3:53707098-53707117 | Msa0125260:intron | 25.0% |
| ! | AGAAAAAAGTTTGGTAGAAT+TGG | - | chr1_3:53707139-53707158 | None:intergenic | 25.0% |
| CAGCAACAAAAAAACAATAG+CGG | + | chr1_3:53703345-53703364 | Msa0125260:five_prime_UTR | 30.0% | |
| !! | TGTGTGTGTTTTGTTATGTT+AGG | + | chr1_3:53703545-53703564 | Msa0125260:intron | 30.0% |
| !! | GTTATTATAGGTTGATTTGG+TGG | + | chr1_3:53703932-53703951 | Msa0125260:intron | 30.0% |
| AAATGGAGATAATGTCCAAA+GGG | - | chr1_3:53704032-53704051 | None:intergenic | 30.0% | |
| TAAATGGAGATAATGTCCAA+AGG | - | chr1_3:53704033-53704052 | None:intergenic | 30.0% | |
| !! | TGATGGATAAACTTTTCAAG+GGG | + | chr1_3:53704054-53704073 | Msa0125260:CDS | 30.0% |
| TACTATGTCCTTTGGTTATA+GGG | + | chr1_3:53704136-53704155 | Msa0125260:intron | 30.0% | |
| CTATTTATCCCTATAACCAA+AGG | - | chr1_3:53704147-53704166 | None:intergenic | 30.0% | |
| ATGAACAAAAAGTTGTTCCA+TGG | - | chr1_3:53704289-53704308 | None:intergenic | 30.0% | |
| ! | GAATGTCAATTCTGTTTTCT+TGG | - | chr1_3:53704503-53704522 | None:intergenic | 30.0% |
| TTCTGCTTAATTCCTAACTT+TGG | + | chr1_3:53704553-53704572 | Msa0125260:intron | 30.0% | |
| ! | TTAATTCCTAACTTTGGTTC+TGG | + | chr1_3:53704559-53704578 | Msa0125260:intron | 30.0% |
| ! | AAAGTTTTGCACCGAAATTT+GGG | - | chr1_3:53704748-53704767 | None:intergenic | 30.0% |
| ! | AAAAGTTTTGCACCGAAATT+TGG | - | chr1_3:53704749-53704768 | None:intergenic | 30.0% |
| CTTACCTTACAAGTATATGA+AGG | + | chr1_3:53704861-53704880 | Msa0125260:intron | 30.0% | |
| ! | AAACTCTAGAAATCTTCACA+AGG | + | chr1_3:53705042-53705061 | Msa0125260:intron | 30.0% |
| AACCAAACTGAAATAGTGAA+GGG | + | chr1_3:53705073-53705092 | Msa0125260:intron | 30.0% | |
| TTGATTAAACTATGCAAGAG+TGG | - | chr1_3:53705147-53705166 | None:intergenic | 30.0% | |
| TGCTTCATAATTAAAGTGTG+AGG | + | chr1_3:53705354-53705373 | Msa0125260:intron | 30.0% | |
| TCATAATTAAAGTGTGAGGT+TGG | + | chr1_3:53705358-53705377 | Msa0125260:intron | 30.0% | |
| TTGTTCATGACTATATTCCA+AGG | - | chr1_3:53705396-53705415 | None:intergenic | 30.0% | |
| GTCATAAATCTTCTTCTGTT+TGG | + | chr1_3:53705469-53705488 | Msa0125260:intron | 30.0% | |
| !!! | GTTTTTTGAACATGCAGTTT+TGG | + | chr1_3:53705540-53705559 | Msa0125260:intron | 30.0% |
| CAAAGCTGTGAAATAAAACA+CGG | - | chr1_3:53705610-53705629 | None:intergenic | 30.0% | |
| !!! | GTTTTATTTCACAGCTTTGT+TGG | + | chr1_3:53705611-53705630 | Msa0125260:CDS | 30.0% |
| ATCACAATATAGTTGAAAGC+CGG | - | chr1_3:53705878-53705897 | None:intergenic | 30.0% | |
| CAGTACATATGTACATCATT+AGG | + | chr1_3:53705903-53705922 | Msa0125260:intron | 30.0% | |
| AAAATTGTGAAGATGCAATG+TGG | + | chr1_3:53705970-53705989 | Msa0125260:intron | 30.0% | |
| !!! | ATTTTAATTGCACCATAAGG+TGG | + | chr1_3:53706029-53706048 | Msa0125260:intron | 30.0% |
| AGGATATTTCATTCTCTACT+AGG | + | chr1_3:53706266-53706285 | Msa0125260:intron | 30.0% | |
| CGACTAATATGATTTATCTG+TGG | + | chr1_3:53706430-53706449 | Msa0125260:intron | 30.0% | |
| ! | CTCTAAGAATGATTGTTAGT+AGG | + | chr1_3:53706463-53706482 | Msa0125260:intron | 30.0% |
| !! | CTCACTAATGGATTAAATCA+TGG | - | chr1_3:53706576-53706595 | None:intergenic | 30.0% |
| AATCCATTAGTGAGAAAAAG+AGG | + | chr1_3:53706582-53706601 | Msa0125260:intron | 30.0% | |
| ! | GTTTTCCACAAGTTACAAAT+TGG | + | chr1_3:53706715-53706734 | Msa0125260:intron | 30.0% |
| GTTTACCAATTTGTAACTTG+TGG | - | chr1_3:53706723-53706742 | None:intergenic | 30.0% | |
| AGTTACAAATTGGTAAACTG+AGG | + | chr1_3:53706725-53706744 | Msa0125260:intron | 30.0% | |
| GTTACAAATTGGTAAACTGA+GGG | + | chr1_3:53706726-53706745 | Msa0125260:intron | 30.0% | |
| !! | GAGCTTTTAAAAATCACAGA+TGG | + | chr1_3:53706840-53706859 | Msa0125260:intron | 30.0% |
| ATGTTAGTAAGCTTTCTTGA+TGG | + | chr1_3:53707220-53707239 | Msa0125260:intron | 30.0% | |
| TGTTAGTAAGCTTTCTTGAT+GGG | + | chr1_3:53707221-53707240 | Msa0125260:intron | 30.0% | |
| TTGATTTACTTTCTTGCATC+AGG | + | chr1_3:53707284-53707303 | Msa0125260:intron | 30.0% | |
| TGATTTACTTTCTTGCATCA+GGG | + | chr1_3:53707285-53707304 | Msa0125260:intron | 30.0% | |
| AGAATAGTCTTCACACATTT+GGG | + | chr1_3:53707367-53707386 | Msa0125260:three_prime_UTR | 30.0% | |
| !! | AAAAAACAATAGCGGACTAG+CGG | + | chr1_3:53703353-53703372 | Msa0125260:five_prime_UTR | 35.0% |
| ! | ATTACTTCATCAGTTCTAGC+TGG | + | chr1_3:53703570-53703589 | Msa0125260:intron | 35.0% |
| ! | CAGAAGGATTCTTCTTTTCA+TGG | + | chr1_3:53703644-53703663 | Msa0125260:intron | 35.0% |
| !! | CTTTTGATTGTAGGCATGTT+CGG | - | chr1_3:53703811-53703830 | None:intergenic | 35.0% |
| ! | ATGCCTACAATCAAAAGTGT+CGG | + | chr1_3:53703814-53703833 | Msa0125260:intron | 35.0% |
| ! | TGGTGGTAGTTGAATTTTGA+AGG | + | chr1_3:53703949-53703968 | Msa0125260:intron | 35.0% |
| !! | AGTTGAATTTTGAAGGTCTG+TGG | + | chr1_3:53703956-53703975 | Msa0125260:intron | 35.0% |
| !! | AAACTTTTCAAGGGGAAGAA+AGG | + | chr1_3:53704062-53704081 | Msa0125260:CDS | 35.0% |
| CAATGAAACTGTTGCTAAGA+AGG | + | chr1_3:53704085-53704104 | Msa0125260:CDS | 35.0% | |
| ATTGTGTGTACTATGTCCTT+TGG | + | chr1_3:53704128-53704147 | Msa0125260:intron | 35.0% | |
| GTACTATGTCCTTTGGTTAT+AGG | + | chr1_3:53704135-53704154 | Msa0125260:intron | 35.0% | |
| ! | GTATTTTGTGTTGTGTGATC+AGG | + | chr1_3:53704166-53704185 | Msa0125260:intron | 35.0% |
| GAGAACTAGTTATTTGCTCA+AGG | - | chr1_3:53704267-53704286 | None:intergenic | 35.0% | |
| ! | AGCAAATAACTAGTTCTCCA+TGG | + | chr1_3:53704269-53704288 | Msa0125260:CDS | 35.0% |
| ! | ATTCTGTTTTCTTGGTAGAG+AGG | - | chr1_3:53704495-53704514 | None:intergenic | 35.0% |
| ATAGTACCAGAACCAAAGTT+AGG | - | chr1_3:53704568-53704587 | None:intergenic | 35.0% | |
| AGACCTTCTATCCCAAATTT+CGG | + | chr1_3:53704734-53704753 | Msa0125260:intron | 35.0% | |
| AGACCCTTCATATACTTGTA+AGG | - | chr1_3:53704868-53704887 | None:intergenic | 35.0% | |
| ACATTGAATTTAATTCCCGG+AGG | + | chr1_3:53704937-53704956 | Msa0125260:intron | 35.0% | |
| ! | TTCCTTTTATTGCTTTCCTC+CGG | - | chr1_3:53704956-53704975 | None:intergenic | 35.0% |
| GAACCAAACTGAAATAGTGA+AGG | + | chr1_3:53705072-53705091 | Msa0125260:intron | 35.0% | |
| TAAGCTGGAATTGTTTCATG+AGG | - | chr1_3:53705252-53705271 | None:intergenic | 35.0% | |
| AATAAAACACGGAACTGCAA+AGG | - | chr1_3:53705599-53705618 | None:intergenic | 35.0% | |
| AACGATTAAGCATCATTGGT+TGG | + | chr1_3:53705727-53705746 | Msa0125260:intron | 35.0% | |
| !! | GTTGATAGTACTGTGAGTAT+AGG | + | chr1_3:53705749-53705768 | Msa0125260:intron | 35.0% |
| ! | TGATCCTTTTATATTGGGTC+CGG | + | chr1_3:53705856-53705875 | Msa0125260:intron | 35.0% |
| ! | TGAGTATGATGGAATAGTCT+CGG | - | chr1_3:53706088-53706107 | None:intergenic | 35.0% |
| CAGTACAACTATACACGATT+TGG | - | chr1_3:53706134-53706153 | None:intergenic | 35.0% | |
| TGATTTATGATCATTGTCCG+TGG | + | chr1_3:53706152-53706171 | Msa0125260:intron | 35.0% | |
| ! | TCTTGACTTTTGTCAAGTAC+TGG | + | chr1_3:53706192-53706211 | Msa0125260:intron | 35.0% |
| TAACCAACATAAGTCACCAT+CGG | + | chr1_3:53706381-53706400 | Msa0125260:intron | 35.0% | |
| TGATTGTTAGTAGGAAGAGA+AGG | + | chr1_3:53706472-53706491 | Msa0125260:intron | 35.0% | |
| ! | ATGCCTCTTTTTCTCACTAA+TGG | - | chr1_3:53706588-53706607 | None:intergenic | 35.0% |
| CACATCTTGGTTATAGTCTT+GGG | - | chr1_3:53706637-53706656 | None:intergenic | 35.0% | |
| !! | CTTGTGGAAAACTGTTTTAG+TGG | - | chr1_3:53706707-53706726 | None:intergenic | 35.0% |
| AAATCACAGATGGAAAAAGG+TGG | + | chr1_3:53706850-53706869 | Msa0125260:intron | 35.0% | |
| GATTCTGAACTTGTGAATAC+AGG | + | chr1_3:53706894-53706913 | Msa0125260:intron | 35.0% | |
| AATACAGGACTCCATAGATT+TGG | + | chr1_3:53706909-53706928 | Msa0125260:intron | 35.0% | |
| ! | TCATTGAAGTTTTCACCATC+AGG | - | chr1_3:53706945-53706964 | None:intergenic | 35.0% |
| AAAACTTCAATGAACCTTGC+TGG | + | chr1_3:53706952-53706971 | Msa0125260:intron | 35.0% | |
| CATGCATAGTACTATTAGTC+AGG | - | chr1_3:53707203-53707222 | None:intergenic | 35.0% | |
| TCTTTCTGAATCTGAAAGCA+AGG | + | chr1_3:53707311-53707330 | Msa0125260:CDS | 35.0% | |
| ATCATCAGATGCTATCAAGA+AGG | + | chr1_3:53707336-53707355 | Msa0125260:CDS | 35.0% | |
| CAGAATAGTCTTCACACATT+TGG | + | chr1_3:53707366-53707385 | Msa0125260:three_prime_UTR | 35.0% | |
| !! | ATCGTTGACTTTGTCAGACA+TGG | - | chr1_3:53703404-53703423 | None:intergenic | 40.0% |
| !! | AATGAAACCTTGGTTCTGAG+AGG | - | chr1_3:53703463-53703482 | None:intergenic | 40.0% |
| CTAAGAAGCTTCAGTTCAGA+AGG | + | chr1_3:53703628-53703647 | Msa0125260:intron | 40.0% | |
| AAACACCTACACGTATACAC+CGG | + | chr1_3:53703717-53703736 | Msa0125260:intron | 40.0% | |
| ! | TTCTATGTTTTCCTTAGCCC+TGG | + | chr1_3:53704189-53704208 | Msa0125260:intron | 40.0% |
| TAAAACAAGTACCAGGGCTA+AGG | - | chr1_3:53704203-53704222 | None:intergenic | 40.0% | |
| ! | TGTTTTCTTGGTAGAGAGGT+GGG | - | chr1_3:53704491-53704510 | None:intergenic | 40.0% |
| ! | TCCTTTTATTGCTTTCCTCC+GGG | - | chr1_3:53704955-53704974 | None:intergenic | 40.0% |
| GACCCTTCACTATTTCAGTT+TGG | - | chr1_3:53705078-53705097 | None:intergenic | 40.0% | |
| ! | TATGAAGCACTATGCAGTGA+AGG | - | chr1_3:53705343-53705362 | None:intergenic | 40.0% |
| ATCTTCTTCTGTTTGGCCAA+TGG | + | chr1_3:53705476-53705495 | Msa0125260:intron | 40.0% | |
| TAATTCACCCAACCAACGAT+AGG | - | chr1_3:53705566-53705585 | None:intergenic | 40.0% | |
| AAAGCCGGACCCAATATAAA+AGG | - | chr1_3:53705863-53705882 | None:intergenic | 40.0% | |
| TTAGGCCACTAAGATTGCTT+TGG | + | chr1_3:53705921-53705940 | Msa0125260:intron | 40.0% | |
| ATAACCAGAGAACCACCTTA+TGG | - | chr1_3:53706044-53706063 | None:intergenic | 40.0% | |
| GAAACAAGTTTGACAACGCT+AGG | + | chr1_3:53706334-53706353 | Msa0125260:intron | 40.0% | |
| AACCAACATAAGTCACCATC+GGG | + | chr1_3:53706382-53706401 | Msa0125260:intron | 40.0% | |
| ! | ATGGTGAATTCTTTTCCCAC+TGG | - | chr1_3:53706557-53706576 | None:intergenic | 40.0% |
| CCACATCTTGGTTATAGTCT+TGG | - | chr1_3:53706638-53706657 | None:intergenic | 40.0% | |
| CCAAGACTATAACCAAGATG+TGG | + | chr1_3:53706635-53706654 | Msa0125260:intron | 40.0% | |
| TGCATTTGTCTTCCACATCT+TGG | - | chr1_3:53706650-53706669 | None:intergenic | 40.0% | |
| ! | ACGATTGTAACTTGCATCTC+AGG | + | chr1_3:53706674-53706693 | Msa0125260:intron | 40.0% |
| AGAAACAGTGGCCAGAAATA+TGG | + | chr1_3:53706784-53706803 | Msa0125260:intron | 40.0% | |
| TCAATATGGTATCACCAGCA+AGG | - | chr1_3:53706969-53706988 | None:intergenic | 40.0% | |
| TGTGAAGACTATTCTGTCCT+AGG | - | chr1_3:53707362-53707381 | None:intergenic | 40.0% | |
| TAGTCTTCACACATTTGGGA+TGG | + | chr1_3:53707371-53707390 | Msa0125260:three_prime_UTR | 40.0% | |
| CATGGCGATTGATCAACCTT+TGG | - | chr1_3:53703386-53703405 | None:intergenic | 45.0% | |
| CTGACAAAGTCAACGATGCT+TGG | + | chr1_3:53703407-53703426 | Msa0125260:CDS | 45.0% | |
| GAGGATGAAGCTTAAGCTGA+AGG | - | chr1_3:53703444-53703463 | None:intergenic | 45.0% | |
| !! | ATTGTAGGCATGTTCGGTGT+TGG | - | chr1_3:53703805-53703824 | None:intergenic | 45.0% |
| !! | GCACCGACACTTTTGATTGT+AGG | - | chr1_3:53703820-53703839 | None:intergenic | 45.0% |
| CTATATGGTTTCGCCTATGC+AGG | + | chr1_3:53704005-53704024 | Msa0125260:CDS | 45.0% | |
| ! | CTGTTTTCTTGGTAGAGAGG+TGG | - | chr1_3:53704492-53704511 | None:intergenic | 45.0% |
| ! | GCACCGAAATTTGGGATAGA+AGG | - | chr1_3:53704740-53704759 | None:intergenic | 45.0% |
| TCCCGGAGGAAAGCAATAAA+AGG | + | chr1_3:53704951-53704970 | Msa0125260:intron | 45.0% | |
| !! | AAAGTGTGAGGTTGGTTTGC+AGG | + | chr1_3:53705366-53705385 | Msa0125260:intron | 45.0% |
| CTATCCTACTGTCCAGTTGA+CGG | + | chr1_3:53705428-53705447 | Msa0125260:CDS | 45.0% | |
| !! | ATGCAGTTTTGGCCTATCGT+TGG | + | chr1_3:53705551-53705570 | Msa0125260:intron | 45.0% |
| !! | AGTTTTGGCCTATCGTTGGT+TGG | + | chr1_3:53705555-53705574 | Msa0125260:intron | 45.0% |
| !! | GTTTTGGCCTATCGTTGGTT+GGG | + | chr1_3:53705556-53705575 | Msa0125260:intron | 45.0% |
| ! | GGAACTGCAAAGGCATATAC+TGG | - | chr1_3:53705589-53705608 | None:intergenic | 45.0% |
| !! | ACAGCTTTGTTGGTTCATGC+TGG | + | chr1_3:53705621-53705640 | Msa0125260:CDS | 45.0% |
| GACAGCCAAAGCAATCTTAG+TGG | - | chr1_3:53705929-53705948 | None:intergenic | 45.0% | |
| GAGAATATCACGATGAGCCA+CGG | - | chr1_3:53706172-53706191 | None:intergenic | 45.0% | |
| TGATTGTCGACGGTAAGAGA+GGG | + | chr1_3:53706405-53706424 | Msa0125260:intron | 45.0% | |
| ! | GGTTATAGTCTTGGGTATGC+TGG | - | chr1_3:53706629-53706648 | None:intergenic | 45.0% |
| GTGCGTGTGAACACATGATT+GGG | + | chr1_3:53706872-53706891 | Msa0125260:intron | 45.0% | |
| GAGCGGTATCTCCAAATCTA+TGG | - | chr1_3:53706923-53706942 | None:intergenic | 45.0% | |
| ! | GAAGTTTTCACCATCAGGAG+CGG | - | chr1_3:53706940-53706959 | None:intergenic | 45.0% |
| AGATGCTATCAAGAAGGCCT+AGG | + | chr1_3:53707342-53707361 | Msa0125260:CDS | 45.0% | |
| GCTTCATCCTCTCAGAACCA+AGG | + | chr1_3:53703453-53703472 | Msa0125260:CDS | 50.0% | |
| GCTGTTGCACAGAAGCTTTC+TGG | + | chr1_3:53703603-53703622 | Msa0125260:intron | 50.0% | |
| ! | GTCAGTGTCATTGTCGTGTC+CGG | - | chr1_3:53703739-53703758 | None:intergenic | 50.0% |
| GACACGACAATGACACTGAC+AGG | + | chr1_3:53703739-53703758 | Msa0125260:intron | 50.0% | |
| CGACAATGACACTGACAGGT+TGG | + | chr1_3:53703743-53703762 | Msa0125260:intron | 50.0% | |
| ATGTCCAAAGGGTCCTGCAT+AGG | - | chr1_3:53704021-53704040 | None:intergenic | 50.0% | |
| !! | GGTGGGTTACACAACACAAG+AGG | - | chr1_3:53704474-53704493 | None:intergenic | 50.0% |
| !! | GTTGGTTTGCAGGAAGACCT+TGG | + | chr1_3:53705376-53705395 | Msa0125260:intron | 50.0% |
| TGCACCATAAGGTGGTTCTC+TGG | + | chr1_3:53706037-53706056 | Msa0125260:intron | 50.0% | |
| CACCCGATGGTGACTTATGT+TGG | - | chr1_3:53706387-53706406 | None:intergenic | 50.0% | |
| GTGATTGTCGACGGTAAGAG+AGG | + | chr1_3:53706404-53706423 | Msa0125260:intron | 50.0% | |
| TTTCCCACTGGCGATCATTG+AGG | - | chr1_3:53706545-53706564 | None:intergenic | 50.0% | |
| CATTGCCTCCATCTCTTCCA+GGG | - | chr1_3:53706756-53706775 | None:intergenic | 50.0% | |
| AATGCCGGTGCAAGAAACAG+TGG | + | chr1_3:53706772-53706791 | Msa0125260:intron | 50.0% | |
| CGCGCATGAAGCCATATTTC+TGG | - | chr1_3:53706798-53706817 | None:intergenic | 50.0% | |
| GGTGCGTGTGAACACATGAT+TGG | + | chr1_3:53706871-53706890 | Msa0125260:intron | 50.0% | |
| TTTGGAGATACCGCTCCTGA+TGG | + | chr1_3:53706927-53706946 | Msa0125260:intron | 50.0% | |
| GACTAGCGGAGACAGACCAA+AGG | + | chr1_3:53703367-53703386 | Msa0125260:five_prime_UTR | 55.0% | |
| CGTGTCCGGTGTATACGTGT+AGG | - | chr1_3:53703725-53703744 | None:intergenic | 55.0% | |
| TTCGCCTATGCAGGACCCTT+TGG | + | chr1_3:53704014-53704033 | Msa0125260:CDS | 55.0% | |
| ATACCTTCCACGCCGTCAAC+TGG | - | chr1_3:53705443-53705462 | None:intergenic | 55.0% | |
| CACCATCGGGTGATTGTCGA+CGG | + | chr1_3:53706395-53706414 | Msa0125260:intron | 55.0% | |
| TACCGTCGACAATCACCCGA+TGG | - | chr1_3:53706400-53706419 | None:intergenic | 55.0% | |
| ACCACCTCAATGATCGCCAG+TGG | + | chr1_3:53706538-53706557 | Msa0125260:intron | 55.0% | |
| CCACCTCAATGATCGCCAGT+GGG | + | chr1_3:53706539-53706558 | Msa0125260:intron | 55.0% | |
| GGTAAACTGAGGGTAGACCC+TGG | + | chr1_3:53706736-53706755 | Msa0125260:intron | 55.0% | |
| AGGGTAGACCCTGGAAGAGA+TGG | + | chr1_3:53706745-53706764 | Msa0125260:intron | 55.0% | |
| GTAGACCCTGGAAGAGATGG+AGG | + | chr1_3:53706748-53706767 | Msa0125260:intron | 55.0% | |
| GCATTGCCTCCATCTCTTCC+AGG | - | chr1_3:53706757-53706776 | None:intergenic | 55.0% | |
| GGAAGAGATGGAGGCAATGC+CGG | + | chr1_3:53706757-53706776 | Msa0125260:intron | 55.0% | |
| ! | CTGGCCACTGTTTCTTGCAC+CGG | - | chr1_3:53706779-53706798 | None:intergenic | 55.0% |
| GCGATGACGTGCAACTGCTA+GGG | + | chr1_3:53706815-53706834 | Msa0125260:intron | 55.0% | |
| CACGCCGTCAACTGGACAGT+AGG | - | chr1_3:53705435-53705454 | None:intergenic | 60.0% | |
| CTACTGTCCAGTTGACGGCG+TGG | + | chr1_3:53705433-53705452 | Msa0125260:CDS | 60.0% | |
| TGTCCAGTTGACGGCGTGGA+AGG | + | chr1_3:53705437-53705456 | Msa0125260:CDS | 60.0% | |
| CCCACTGGCGATCATTGAGG+TGG | - | chr1_3:53706542-53706561 | None:intergenic | 60.0% | |
| CGCGATGACGTGCAACTGCT+AGG | + | chr1_3:53706814-53706833 | Msa0125260:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 53703286 | 53707426 | 53703286 | ID=Msa0125260;Name=Msa0125260 |
| chr1_3 | mRNA | 53703286 | 53707426 | 53703286 | ID=Msa0125260-mRNA-1;Parent=Msa0125260;Name=Msa0125260-mRNA-1;_AED=0.10;_eAED=0.10;_QI=117|0.8|1|1|0.6|0.83|6|63|154 |
| chr1_3 | exon | 53703286 | 53703474 | 53703286 | ID=Msa0125260-mRNA-1:exon:16450;Parent=Msa0125260-mRNA-1 |
| chr1_3 | exon | 53704005 | 53704106 | 53704005 | ID=Msa0125260-mRNA-1:exon:16451;Parent=Msa0125260-mRNA-1 |
| chr1_3 | exon | 53704259 | 53704334 | 53704259 | ID=Msa0125260-mRNA-1:exon:16452;Parent=Msa0125260-mRNA-1 |
| chr1_3 | exon | 53705388 | 53705458 | 53705388 | ID=Msa0125260-mRNA-1:exon:16453;Parent=Msa0125260-mRNA-1 |
| chr1_3 | exon | 53705557 | 53705642 | 53705557 | ID=Msa0125260-mRNA-1:exon:16454;Parent=Msa0125260-mRNA-1 |
| chr1_3 | exon | 53707306 | 53707426 | 53707306 | ID=Msa0125260-mRNA-1:exon:16455;Parent=Msa0125260-mRNA-1 |
| chr1_3 | five_prime_UTR | 53703286 | 53703402 | 53703286 | ID=Msa0125260-mRNA-1:five_prime_utr;Parent=Msa0125260-mRNA-1 |
| chr1_3 | CDS | 53703403 | 53703474 | 53703403 | ID=Msa0125260-mRNA-1:cds;Parent=Msa0125260-mRNA-1 |
| chr1_3 | CDS | 53704005 | 53704106 | 53704005 | ID=Msa0125260-mRNA-1:cds;Parent=Msa0125260-mRNA-1 |
| chr1_3 | CDS | 53704259 | 53704334 | 53704259 | ID=Msa0125260-mRNA-1:cds;Parent=Msa0125260-mRNA-1 |
| chr1_3 | CDS | 53705388 | 53705458 | 53705388 | ID=Msa0125260-mRNA-1:cds;Parent=Msa0125260-mRNA-1 |
| chr1_3 | CDS | 53705557 | 53705642 | 53705557 | ID=Msa0125260-mRNA-1:cds;Parent=Msa0125260-mRNA-1 |
| chr1_3 | CDS | 53707306 | 53707363 | 53707306 | ID=Msa0125260-mRNA-1:cds;Parent=Msa0125260-mRNA-1 |
| chr1_3 | three_prime_UTR | 53707364 | 53707426 | 53707364 | ID=Msa0125260-mRNA-1:three_prime_utr;Parent=Msa0125260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
