AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030050 MtrunA17_Chr1g0187331 93.583 187 12 0 1 187 1 187 2.02e-130 363
Msa0030050 MtrunA17_Chr2g0288811 56.831 183 79 0 1 183 1 183 1.54e-75 224
Msa0030050 MtrunA17_Chr8g0390511 26.699 206 123 4 8 186 7 211 1.14e-15 72.4
Msa0030050 MtrunA17_Chr2g0318131 29.570 186 119 6 9 185 177 359 1.33e-14 70.9
Msa0030050 MtrunA17_Chr6g0465041 24.713 174 127 3 12 183 56 227 3.39e-14 68.2
Msa0030050 MtrunA17_Chr7g0255351 28.402 169 115 5 12 178 90 254 4.47e-14 68.6
Msa0030050 MtrunA17_Chr1g0147191 26.316 190 115 5 9 174 5 193 6.27e-13 64.7
Msa0030050 MtrunA17_Chr2g0324001 26.667 180 128 3 9 186 123 300 3.56e-11 60.8
Msa0030050 MtrunA17_Chr1g0207521 23.810 168 124 2 12 177 85 250 7.20e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030050 AT4G14305.1 75.824 182 44 0 1 182 1 182 5.27e-107 304
Msa0030050 AT4G14305.2 75.641 156 38 0 27 182 15 170 2.50e-90 262
Msa0030050 AT4G04470.1 58.427 178 74 0 10 187 12 189 2.47e-78 232
Msa0030050 AT4G04470.2 58.427 178 74 0 10 187 12 189 2.47e-78 232
Msa0030050 AT5G43140.1 26.163 172 121 5 12 180 82 250 5.81e-13 65.5
Msa0030050 AT5G19750.1 24.855 173 126 4 12 183 118 287 1.01e-12 65.5

Find 39 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGTTGCACAGAAGCTTTC+TGG 0.182029 1_1:-55984543 Msa0030050:CDS
CAGAATAGTCTTCACACTTT+TGG 0.199595 1_1:-55980765 Msa0030050:three_prime_UTR
AAAGTTTATCCATCAATAAA+TGG 0.290399 1_1:+55984085 None:intergenic
ACATTATCTCCATTTATTGA+TGG 0.376713 1_1:-55984094 Msa0030050:CDS
ATACCTTCCACGCCGTCAAC+TGG 0.382299 1_1:+55982691 None:intergenic
TTCGCCTATGCAGGACCCTT+TGG 0.383790 1_1:-55984117 Msa0030050:CDS
TATAATAAACAATATAAAAC+TGG 0.387599 1_1:+55984857 None:intergenic
TATTATGGCTTGATTATTGA+AGG 0.419845 1_1:-55983818 Msa0030050:intron
CAATGAAACTGTTGCTAAGA+AGG 0.429878 1_1:-55984046 Msa0030050:intron
CTCTATGGTTTCGCCTATGC+AGG 0.448355 1_1:-55984126 Msa0030050:CDS
TGTGAAGACTATTCTGTCCT+AGG 0.466264 1_1:+55980772 None:intergenic
ATTACTTCATCAGTTCTAGC+TGG 0.466658 1_1:-55984576 Msa0030050:CDS
GGAACTGCAAAGGCATATAC+TGG 0.477910 1_1:+55982545 None:intergenic
CTATCCTACTGTCCAGTTGA+CGG 0.478021 1_1:-55982703 Msa0030050:CDS
CATGGCGATTGATCAACCTT+TGG 0.479918 1_1:+55984767 None:intergenic
CTGACAAAGTCAACGATGCT+TGG 0.498624 1_1:-55984743 Msa0030050:CDS
ACAGCTTTGTTGGTTCATGC+TGG 0.506633 1_1:-55982510 Msa0030050:intron
GTTGGTTTGCAGGAAGACCT+TGG 0.511703 1_1:-55982755 Msa0030050:intron
AAATGGAGATAATGTCCAAA+GGG 0.531298 1_1:+55984102 None:intergenic
AGCAAATAACTAGTTCTCCA+TGG 0.534969 1_1:-55983862 Msa0030050:CDS
CTAAGAAGCTTCAGTTCAGA+AGG 0.536401 1_1:-55984518 Msa0030050:CDS
GAGAACTAGTTATTTGCTCA+AGG 0.536726 1_1:+55983867 None:intergenic
TGTCCAGTTGACGGCGTGGA+AGG 0.546675 1_1:-55982694 Msa0030050:intron
AGTTGCTATCAAGAAGGCCT+AGG 0.548195 1_1:-55980789 Msa0030050:exon
ATCGTTGACTTTGTCAGACA+TGG 0.551719 1_1:+55984749 None:intergenic
GAGGATGAAGCTTAAGCTGA+AGG 0.563374 1_1:+55984709 None:intergenic
TTGTTCATGACTATATTCCA+AGG 0.574186 1_1:+55982738 None:intergenic
ATGTCCAAAGGGTCCTGCAT+AGG 0.576071 1_1:+55984113 None:intergenic
TCTTTCTGAATCTGAAAGCA+AGG 0.580113 1_1:-55980820 Msa0030050:CDS
ATCATCAGTTGCTATCAAGA+AGG 0.586636 1_1:-55980795 Msa0030050:CDS
GCTTCATCCTCTCAGAACCA+AGG 0.597074 1_1:-55984697 Msa0030050:intron
CACGCCGTCAACTGGACAGT+AGG 0.614091 1_1:+55982699 None:intergenic
TAAATGGAGATAATGTCCAA+AGG 0.616169 1_1:+55984101 None:intergenic
TAATTCACCCAACCAACGAT+AGG 0.618119 1_1:+55982568 None:intergenic
AATAAAACACGGAACTGCAA+AGG 0.621872 1_1:+55982535 None:intergenic
CTACTGTCCAGTTGACGGCG+TGG 0.646340 1_1:-55982698 Msa0030050:CDS
TATGAAACCTTGGTTCTGAG+AGG 0.671102 1_1:+55984690 None:intergenic
CAAAGCTGTGAAATAAAACA+CGG 0.671747 1_1:+55982524 None:intergenic
GACTAGCGGAGACAGACCAA+AGG 0.742088 1_1:-55984783 Msa0030050:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAAACAATATAAAAC+TGG + chr1_1:55980737-55980756 None:intergenic 10.0%
!!! ATAACATTTAAAATTATTAC+TGG + chr1_1:55981223-55981242 None:intergenic 10.0%
!! GAAATAAAAAAATTTCAATA+TGG + chr1_1:55984443-55984462 None:intergenic 10.0%
!! CAATTAATACTAAATATTAG+AGG + chr1_1:55981985-55982004 None:intergenic 15.0%
!! TCAAAATTATCAATGTTTAT+AGG - chr1_1:55982085-55982104 Msa0030050:intron 15.0%
!! TAATGATTATTGTAAACTTA+GGG + chr1_1:55982122-55982141 None:intergenic 15.0%
!! ATAATGATTATTGTAAACTT+AGG + chr1_1:55982123-55982142 None:intergenic 15.0%
!! GAAAACATTTATAGAATAAA+AGG - chr1_1:55982277-55982296 Msa0030050:intron 15.0%
!!! TGAAAATTGTTTTTATTAAG+TGG + chr1_1:55982757-55982776 None:intergenic 15.0%
!! TAATGTCATATTTCTTATAA+AGG - chr1_1:55983263-55983282 Msa0030050:intron 15.0%
!! TAGTAAAATATATGAAACCT+TGG + chr1_1:55980914-55980933 None:intergenic 20.0%
!! AAAGTTTATCCATCAATAAA+TGG + chr1_1:55981509-55981528 None:intergenic 20.0%
!! GAATGAAATATCATATTACT+AGG - chr1_1:55981697-55981716 Msa0030050:intron 20.0%
!!! TTTTTGTTCATGATGTATTA+TGG - chr1_1:55981758-55981777 Msa0030050:intron 20.0%
!!! ACATTGATAATTTTGAACTT+CGG + chr1_1:55982081-55982100 None:intergenic 20.0%
!! TCATTATTTACAAGTCAATA+TGG - chr1_1:55982136-55982155 Msa0030050:intron 20.0%
!! TTAACATTGAATTTAATTCC+CGG - chr1_1:55982394-55982413 Msa0030050:intron 20.0%
!! ATAATGTATTATCAATAAGC+TGG + chr1_1:55982727-55982746 None:intergenic 20.0%
!!! CAATTTGAATAGTTAGTTTT+TGG - chr1_1:55982961-55982980 Msa0030050:intron 20.0%
!!! TAATGTTGATCCTTTTATAT+TGG - chr1_1:55983308-55983327 Msa0030050:intron 20.0%
!!! AATGTTGATCCTTTTATATT+GGG - chr1_1:55983309-55983328 Msa0030050:intron 20.0%
!!! TCACAATTTTTACTTAATCA+AGG + chr1_1:55983418-55983437 None:intergenic 20.0%
!! GCAATTAAAATTCAAATTGA+GGG + chr1_1:55983478-55983497 None:intergenic 20.0%
!! TGCAATTAAAATTCAAATTG+AGG + chr1_1:55983479-55983498 None:intergenic 20.0%
!!! GAATATTATTTTGAGTATGA+TGG + chr1_1:55983557-55983576 None:intergenic 20.0%
!!! TGTATCTAGTTTCAATATTT+TGG - chr1_1:55983701-55983720 Msa0030050:intron 20.0%
!! TGTGAAAATGCATTATTATA+GGG + chr1_1:55983766-55983785 None:intergenic 20.0%
!! ATGTGAAAATGCATTATTAT+AGG + chr1_1:55983767-55983786 None:intergenic 20.0%
!! TTTCTAAATTATATCACACT+AGG - chr1_1:55984465-55984484 Msa0030050:intron 20.0%
!! CACTAGGATATATTTATAAT+AGG - chr1_1:55984481-55984500 Msa0030050:intron 20.0%
!!! TTTTCATACAGAAAAAAGTT+TGG + chr1_1:55984608-55984627 None:intergenic 20.0%
!! ATGAATTATTTAGCAGTTAA+TGG - chr1_1:55984717-55984736 Msa0030050:CDS 20.0%
!! AGTTTGATAGTAGTTGAATT+TGG - chr1_1:55981405-55981424 Msa0030050:intron 25.0%
! ACATTATCTCCATTTATTGA+TGG - chr1_1:55981497-55981516 Msa0030050:intron 25.0%
!!! ATTGATGGATAAACTTTTCA+AGG - chr1_1:55981512-55981531 Msa0030050:intron 25.0%
!!! TTGATGGATAAACTTTTCAA+GGG - chr1_1:55981513-55981532 Msa0030050:intron 25.0%
!! TTTTCATAAAACAAGTACCA+GGG + chr1_1:55981669-55981688 None:intergenic 25.0%
!! TTTTTCATAAAACAAGTACC+AGG + chr1_1:55981670-55981689 None:intergenic 25.0%
! TATTATGGCTTGATTATTGA+AGG - chr1_1:55981773-55981792 Msa0030050:intron 25.0%
! TTGTTCGCAATATCATATTA+AGG + chr1_1:55982250-55982269 None:intergenic 25.0%
! TTACCTTACAAGTATATGAA+GGG - chr1_1:55982322-55982341 Msa0030050:intron 25.0%
! AATTTAAGAAAGTAAGGACT+TGG + chr1_1:55982356-55982375 None:intergenic 25.0%
! CAGAACAATTTAAGAAAGTA+AGG + chr1_1:55982362-55982381 None:intergenic 25.0%
!! TAGATGAAGTTTAAGCTTTT+TGG - chr1_1:55982644-55982663 Msa0030050:intron 25.0%
! AACTATTCAAATTGTTCCAT+TGG + chr1_1:55982955-55982974 None:intergenic 25.0%
!!! TTGAATAGTTAGTTTTTGGA+AGG - chr1_1:55982965-55982984 Msa0030050:intron 25.0%
!! ATGATGCTTAATCGTTATTT+TGG + chr1_1:55983181-55983200 None:intergenic 25.0%
! AAATAACGATTAAGCATCAT+TGG - chr1_1:55983181-55983200 Msa0030050:intron 25.0%
! CATGCACTATAAATTACAAA+AGG - chr1_1:55983230-55983249 Msa0030050:intron 25.0%
!!! TGAATTTTAATTGCACCATA+AGG - chr1_1:55983484-55983503 Msa0030050:intron 25.0%
!!! ATCTAGTTTCAATATTTTGG+AGG - chr1_1:55983704-55983723 Msa0030050:intron 25.0%
! ACAGATAAATCATATTAGTC+GGG + chr1_1:55983891-55983910 None:intergenic 25.0%
! CACAGATAAATCATATTAGT+CGG + chr1_1:55983892-55983911 None:intergenic 25.0%
! CAATCATATATTCATACTAG+TGG + chr1_1:55983960-55983979 None:intergenic 25.0%
! TAAAAATCACAGATGGAAAA+AGG - chr1_1:55984307-55984326 Msa0030050:intron 25.0%
! TAATTGATATTGTGCAGTAA+AGG - chr1_1:55984558-55984577 Msa0030050:CDS 25.0%
! AGAAAAAAGTTTGGTAGAAT+TGG + chr1_1:55984599-55984618 None:intergenic 25.0%
CAGCAACAAAAAAACAATAG+CGG - chr1_1:55980786-55980805 Msa0030050:exon 30.0%
!! TGTGTGTGTTTTGTTATGTT+AGG - chr1_1:55980990-55981009 Msa0030050:intron 30.0%
TGATAGTAGTTGAATTTGGA+TGG - chr1_1:55981409-55981428 Msa0030050:intron 30.0%
GATAGTAGTTGAATTTGGAT+GGG - chr1_1:55981410-55981429 Msa0030050:intron 30.0%
!! CAAATTATTTTGCAGCTCTA+TGG - chr1_1:55981450-55981469 Msa0030050:intron 30.0%
AAATGGAGATAATGTCCAAA+GGG + chr1_1:55981492-55981511 None:intergenic 30.0%
TAAATGGAGATAATGTCCAA+AGG + chr1_1:55981493-55981512 None:intergenic 30.0%
!! TGATGGATAAACTTTTCAAG+GGG - chr1_1:55981514-55981533 Msa0030050:intron 30.0%
TACTATGTCCTTTGGTTATA+GGG - chr1_1:55981596-55981615 Msa0030050:intron 30.0%
CTATTTATCCCTATAACCAA+AGG + chr1_1:55981607-55981626 None:intergenic 30.0%
ATGAACAAAAAGTTGTTCCA+TGG + chr1_1:55981749-55981768 None:intergenic 30.0%
! GAATGTCAATTCTGTTTTCT+TGG + chr1_1:55981963-55981982 None:intergenic 30.0%
! AAAGTTTTGCACCGAAATTT+GGG + chr1_1:55982208-55982227 None:intergenic 30.0%
! AAAAGTTTTGCACCGAAATT+TGG + chr1_1:55982209-55982228 None:intergenic 30.0%
CTTACCTTACAAGTATATGA+AGG - chr1_1:55982321-55982340 Msa0030050:intron 30.0%
! AAACTCTAGAAATCTTCACA+AGG - chr1_1:55982502-55982521 Msa0030050:intron 30.0%
AACCAAACTGAAATAGTGAA+GGG - chr1_1:55982533-55982552 Msa0030050:CDS 30.0%
TTGATTAAACTATGCAAGAG+TGG + chr1_1:55982607-55982626 None:intergenic 30.0%
TGCTTCATAATTAAAGTGTG+AGG - chr1_1:55982814-55982833 Msa0030050:intron 30.0%
TCATAATTAAAGTGTGAGGT+TGG - chr1_1:55982818-55982837 Msa0030050:intron 30.0%
TTGTTCATGACTATATTCCA+AGG + chr1_1:55982856-55982875 None:intergenic 30.0%
GTCATAAATCTTCTTCTGTT+TGG - chr1_1:55982929-55982948 Msa0030050:intron 30.0%
!!! GTTTTTTGAACATGCAGTTT+TGG - chr1_1:55983000-55983019 Msa0030050:intron 30.0%
CAAAGCTGTGAAATAAAACA+CGG + chr1_1:55983070-55983089 None:intergenic 30.0%
!!! GTTTTATTTCACAGCTTTGT+TGG - chr1_1:55983071-55983090 Msa0030050:intron 30.0%
ATCACAATATAGTTGAAAGC+CGG + chr1_1:55983336-55983355 None:intergenic 30.0%
CAGTACATATGTACATCATT+AGG - chr1_1:55983361-55983380 Msa0030050:intron 30.0%
AAAATTGTGAAGATGCAATG+TGG - chr1_1:55983428-55983447 Msa0030050:intron 30.0%
!!! ATTTTAATTGCACCATAAGG+TGG - chr1_1:55983487-55983506 Msa0030050:intron 30.0%
AGGATATTTCATTCTCTACT+AGG - chr1_1:55983724-55983743 Msa0030050:intron 30.0%
GCATTATTATAGGGAAAAGA+TGG + chr1_1:55983757-55983776 None:intergenic 30.0%
CGACTAATATGATTTATCTG+TGG - chr1_1:55983890-55983909 Msa0030050:intron 30.0%
! CTCTAAGAATGATTGTTAGT+AGG - chr1_1:55983923-55983942 Msa0030050:intron 30.0%
!! CTCACTAATGGATTAAATCA+TGG + chr1_1:55984036-55984055 None:intergenic 30.0%
AATCCATTAGTGAGAAAAAG+AGG - chr1_1:55984042-55984061 Msa0030050:intron 30.0%
! GTTTTCCACAAGTTACAAAT+TGG - chr1_1:55984175-55984194 Msa0030050:intron 30.0%
GTTTACCAATTTGTAACTTG+TGG + chr1_1:55984183-55984202 None:intergenic 30.0%
AGTTACAAATTGGTAAACTG+AGG - chr1_1:55984185-55984204 Msa0030050:intron 30.0%
GTTACAAATTGGTAAACTGA+GGG - chr1_1:55984186-55984205 Msa0030050:intron 30.0%
!! GAGCTTTTAAAAATCACAGA+TGG - chr1_1:55984300-55984319 Msa0030050:intron 30.0%
ATGTTAGTAAGCTTTCTTGA+TGG - chr1_1:55984680-55984699 Msa0030050:intron 30.0%
TGTTAGTAAGCTTTCTTGAT+GGG - chr1_1:55984681-55984700 Msa0030050:intron 30.0%
TTGATTTACTTTCTTGCATC+AGG - chr1_1:55984744-55984763 Msa0030050:CDS 30.0%
TGATTTACTTTCTTGCATCA+GGG - chr1_1:55984745-55984764 Msa0030050:CDS 30.0%
! AGAATAGTCTTCACACTTTT+GGG - chr1_1:55984827-55984846 Msa0030050:five_prime_UTR 30.0%
!! AAAAAACAATAGCGGACTAG+CGG - chr1_1:55980794-55980813 Msa0030050:CDS 35.0%
! ATTACTTCATCAGTTCTAGC+TGG - chr1_1:55981015-55981034 Msa0030050:intron 35.0%
! CAGAAGGATTCTTCTTTTCA+TGG - chr1_1:55981089-55981108 Msa0030050:intron 35.0%
! ATGCCTCCAATCAAAAGTAT+CGG - chr1_1:55981278-55981297 Msa0030050:intron 35.0%
!!! ATAGCACCGATACTTTTGAT+TGG + chr1_1:55981287-55981306 None:intergenic 35.0%
!! AAACTTTTCAAGGGGAAGAA+AGG - chr1_1:55981522-55981541 Msa0030050:intron 35.0%
CAATGAAACTGTTGCTAAGA+AGG - chr1_1:55981545-55981564 Msa0030050:intron 35.0%
ATTGTGTGTACTATGTCCTT+TGG - chr1_1:55981588-55981607 Msa0030050:intron 35.0%
GTACTATGTCCTTTGGTTAT+AGG - chr1_1:55981595-55981614 Msa0030050:intron 35.0%
! GTATTTTGTGTTGTGTGATC+AGG - chr1_1:55981626-55981645 Msa0030050:intron 35.0%
GAGAACTAGTTATTTGCTCA+AGG + chr1_1:55981727-55981746 None:intergenic 35.0%
! AGCAAATAACTAGTTCTCCA+TGG - chr1_1:55981729-55981748 Msa0030050:intron 35.0%
! ATTCTGTTTTCTTGGTAGAG+AGG + chr1_1:55981955-55981974 None:intergenic 35.0%
TTCTGCTTAATCCCTAACTT+TGG - chr1_1:55982013-55982032 Msa0030050:intron 35.0%
! TTAATCCCTAACTTTGGTTC+TGG - chr1_1:55982019-55982038 Msa0030050:intron 35.0%
TAGTACCAGAACCAAAGTTA+GGG + chr1_1:55982027-55982046 None:intergenic 35.0%
ATAGTACCAGAACCAAAGTT+AGG + chr1_1:55982028-55982047 None:intergenic 35.0%
AGACCTTCTATCCCAAATTT+CGG - chr1_1:55982194-55982213 Msa0030050:intron 35.0%
AGACCCTTCATATACTTGTA+AGG + chr1_1:55982328-55982347 None:intergenic 35.0%
ACATTGAATTTAATTCCCGG+AGG - chr1_1:55982397-55982416 Msa0030050:intron 35.0%
! TTCCTTTTATTGCTTTCCTC+CGG + chr1_1:55982416-55982435 None:intergenic 35.0%
GAACCAAACTGAAATAGTGA+AGG - chr1_1:55982532-55982551 Msa0030050:CDS 35.0%
TAAGCTGGAATTGTTTCATG+AGG + chr1_1:55982712-55982731 None:intergenic 35.0%
AATAAAACACGGAACTGCAA+AGG + chr1_1:55983059-55983078 None:intergenic 35.0%
AACGATTAAGCATCATTGGT+TGG - chr1_1:55983185-55983204 Msa0030050:intron 35.0%
!! GTTGATAGTACTGTGAGTAT+AGG - chr1_1:55983207-55983226 Msa0030050:intron 35.0%
! TGATCCTTTTATATTGGGTC+CGG - chr1_1:55983314-55983333 Msa0030050:intron 35.0%
! TGAGTATGATGGAATAGTCT+CGG + chr1_1:55983546-55983565 None:intergenic 35.0%
CAGTACAACTATACACGATT+TGG + chr1_1:55983592-55983611 None:intergenic 35.0%
TGATTTATGATCATTGTCCG+TGG - chr1_1:55983610-55983629 Msa0030050:intron 35.0%
GTACTTGACAAAAGTCAAGA+GGG + chr1_1:55983650-55983669 None:intergenic 35.0%
AGTACTTGACAAAAGTCAAG+AGG + chr1_1:55983651-55983670 None:intergenic 35.0%
! TCTTGACTTTTGTCAAGTAC+TGG - chr1_1:55983650-55983669 Msa0030050:intron 35.0%
TAACCAACATAAGTCACCAT+CGG - chr1_1:55983841-55983860 Msa0030050:CDS 35.0%
TGATTGTTAGTAGGAAGAGA+AGG - chr1_1:55983932-55983951 Msa0030050:intron 35.0%
! ATGCCTCTTTTTCTCACTAA+TGG + chr1_1:55984048-55984067 None:intergenic 35.0%
CACATCTTGGTTATAGTCTT+GGG + chr1_1:55984097-55984116 None:intergenic 35.0%
!! CTTGTGGAAAACTGTTTTAG+TGG + chr1_1:55984167-55984186 None:intergenic 35.0%
AAATCACAGATGGAAAAAGG+TGG - chr1_1:55984310-55984329 Msa0030050:intron 35.0%
GATTCTGAACTTGTGAATAC+AGG - chr1_1:55984354-55984373 Msa0030050:intron 35.0%
AATACAGGACTCCATAGATT+TGG - chr1_1:55984369-55984388 Msa0030050:intron 35.0%
! TCATTGAAGTTTTCACCATC+AGG + chr1_1:55984405-55984424 None:intergenic 35.0%
AAAACTTCAATGAACCTTGC+TGG - chr1_1:55984412-55984431 Msa0030050:intron 35.0%
TCTTTCTGAATCTGAAAGCA+AGG - chr1_1:55984771-55984790 Msa0030050:five_prime_UTR 35.0%
ATCATCAGTTGCTATCAAGA+AGG - chr1_1:55984796-55984815 Msa0030050:five_prime_UTR 35.0%
! CAGAATAGTCTTCACACTTT+TGG - chr1_1:55984826-55984845 Msa0030050:five_prime_UTR 35.0%
!! ATCGTTGACTTTGTCAGACA+TGG + chr1_1:55980845-55980864 None:intergenic 40.0%
!! TATGAAACCTTGGTTCTGAG+AGG + chr1_1:55980904-55980923 None:intergenic 40.0%
CTAAGAAGCTTCAGTTCAGA+AGG - chr1_1:55981073-55981092 Msa0030050:intron 40.0%
!! CTTTTGATTGGAGGCATGTT+TGG + chr1_1:55981275-55981294 None:intergenic 40.0%
! TTCTATGTTTTCCTTAGCCC+TGG - chr1_1:55981649-55981668 Msa0030050:intron 40.0%
TAAAACAAGTACCAGGGCTA+AGG + chr1_1:55981663-55981682 None:intergenic 40.0%
! TGTTTTCTTGGTAGAGAGGT+GGG + chr1_1:55981951-55981970 None:intergenic 40.0%
! TCCTTTTATTGCTTTCCTCC+GGG + chr1_1:55982415-55982434 None:intergenic 40.0%
GACCCTTCACTATTTCAGTT+TGG + chr1_1:55982538-55982557 None:intergenic 40.0%
! TATGAAGCACTATGCAGTGA+AGG + chr1_1:55982803-55982822 None:intergenic 40.0%
ATCTTCTTCTGTTTGGCCAA+TGG - chr1_1:55982936-55982955 Msa0030050:intron 40.0%
TAATTCACCCAACCAACGAT+AGG + chr1_1:55983026-55983045 None:intergenic 40.0%
AAAGCCGGACCCAATATAAA+AGG + chr1_1:55983321-55983340 None:intergenic 40.0%
TTAGGCCACTAAGATTGCTT+TGG - chr1_1:55983379-55983398 Msa0030050:intron 40.0%
ATAACCAGAGAACCACCTTA+TGG + chr1_1:55983502-55983521 None:intergenic 40.0%
GAAACAAGTTTGACAACGCT+AGG - chr1_1:55983794-55983813 Msa0030050:intron 40.0%
AACCAACATAAGTCACCATC+GGG - chr1_1:55983842-55983861 Msa0030050:CDS 40.0%
! ATGGTGAATTCTTTTCCCAC+TGG + chr1_1:55984017-55984036 None:intergenic 40.0%
CCACATCTTGGTTATAGTCT+TGG + chr1_1:55984098-55984117 None:intergenic 40.0%
CCAAGACTATAACCAAGATG+TGG - chr1_1:55984095-55984114 Msa0030050:CDS 40.0%
TGCATTTGTCTTCCACATCT+TGG + chr1_1:55984110-55984129 None:intergenic 40.0%
! ACGATTGTAACTTGCATCTC+AGG - chr1_1:55984134-55984153 Msa0030050:intron 40.0%
AGAAACAGTGGCCAGAAATA+TGG - chr1_1:55984244-55984263 Msa0030050:intron 40.0%
TCAATATGGTATCACCAGCA+AGG + chr1_1:55984429-55984448 None:intergenic 40.0%
CATGCATCGTACTATTAGTC+AGG + chr1_1:55984663-55984682 None:intergenic 40.0%
TGTGAAGACTATTCTGTCCT+AGG + chr1_1:55984822-55984841 None:intergenic 40.0%
!! TAGTCTTCACACTTTTGGGA+TGG - chr1_1:55984831-55984850 Msa0030050:five_prime_UTR 40.0%
CATGGCGATTGATCAACCTT+TGG + chr1_1:55980827-55980846 None:intergenic 45.0%
CTGACAAAGTCAACGATGCT+TGG - chr1_1:55980848-55980867 Msa0030050:intron 45.0%
GAGGATGAAGCTTAAGCTGA+AGG + chr1_1:55980885-55980904 None:intergenic 45.0%
GCGAACATCAGACACAACAA+TGG - chr1_1:55981178-55981197 Msa0030050:intron 45.0%
!! GCACCGATACTTTTGATTGG+AGG + chr1_1:55981284-55981303 None:intergenic 45.0%
!! AGTTGAATTTGGATGGGCTG+TGG - chr1_1:55981416-55981435 Msa0030050:intron 45.0%
! CTGTTTTCTTGGTAGAGAGG+TGG + chr1_1:55981952-55981971 None:intergenic 45.0%
! GCACCGAAATTTGGGATAGA+AGG + chr1_1:55982200-55982219 None:intergenic 45.0%
TCCCGGAGGAAAGCAATAAA+AGG - chr1_1:55982411-55982430 Msa0030050:intron 45.0%
!! AAAGTGTGAGGTTGGTTTGC+AGG - chr1_1:55982826-55982845 Msa0030050:intron 45.0%
CTATCCTACTGTCCAGTTGA+CGG - chr1_1:55982888-55982907 Msa0030050:intron 45.0%
!! ATGCAGTTTTGGCCTATCGT+TGG - chr1_1:55983011-55983030 Msa0030050:intron 45.0%
!! AGTTTTGGCCTATCGTTGGT+TGG - chr1_1:55983015-55983034 Msa0030050:intron 45.0%
!! GTTTTGGCCTATCGTTGGTT+GGG - chr1_1:55983016-55983035 Msa0030050:intron 45.0%
! GGAACTGCAAAGGCATATAC+TGG + chr1_1:55983049-55983068 None:intergenic 45.0%
!! ACAGCTTTGTTGGTTCATGC+TGG - chr1_1:55983081-55983100 Msa0030050:intron 45.0%
GACAGCCAAAGCAATCTTAG+TGG + chr1_1:55983387-55983406 None:intergenic 45.0%
! GGTTATAGTCTTGGGTATGC+TGG + chr1_1:55984089-55984108 None:intergenic 45.0%
GTGCGTGTGAACACATGATT+GGG - chr1_1:55984332-55984351 Msa0030050:intron 45.0%
GAGCGGTATCTCCAAATCTA+TGG + chr1_1:55984383-55984402 None:intergenic 45.0%
! GAAGTTTTCACCATCAGGAG+CGG + chr1_1:55984400-55984419 None:intergenic 45.0%
AGTTGCTATCAAGAAGGCCT+AGG - chr1_1:55984802-55984821 Msa0030050:five_prime_UTR 45.0%
GCTTCATCCTCTCAGAACCA+AGG - chr1_1:55980894-55980913 Msa0030050:intron 50.0%
GCTGTTGCACAGAAGCTTTC+TGG - chr1_1:55981048-55981067 Msa0030050:intron 50.0%
!! TTTGGTGCTCGACACGACAA+TGG + chr1_1:55981257-55981276 None:intergenic 50.0%
CTCTATGGTTTCGCCTATGC+AGG - chr1_1:55981465-55981484 Msa0030050:intron 50.0%
ATGTCCAAAGGGTCCTGCAT+AGG + chr1_1:55981481-55981500 None:intergenic 50.0%
!! GGTGGGTTACACAACACAAG+AGG + chr1_1:55981934-55981953 None:intergenic 50.0%
!! GTTGGTTTGCAGGAAGACCT+TGG - chr1_1:55982836-55982855 Msa0030050:intron 50.0%
TGCACCATAAGGTGGTTCTC+TGG - chr1_1:55983495-55983514 Msa0030050:intron 50.0%
GGGAATATCACGATGAGCCA+CGG + chr1_1:55983630-55983649 None:intergenic 50.0%
CACCCGATGGTGACTTATGT+TGG + chr1_1:55983847-55983866 None:intergenic 50.0%
GTGATTGTCGACGGTAAGAG+AGG - chr1_1:55983864-55983883 Msa0030050:CDS 50.0%
TTTCCCACTGGCGATCATTG+AGG + chr1_1:55984005-55984024 None:intergenic 50.0%
CATTGCCTCCATCTCTTCCA+GGG + chr1_1:55984216-55984235 None:intergenic 50.0%
AATGCCGGTGCAAGAAACAG+TGG - chr1_1:55984232-55984251 Msa0030050:intron 50.0%
CGCGCATGAAGCCATATTTC+TGG + chr1_1:55984258-55984277 None:intergenic 50.0%
GGTGCGTGTGAACACATGAT+TGG - chr1_1:55984331-55984350 Msa0030050:intron 50.0%
TTTGGAGATACCGCTCCTGA+TGG - chr1_1:55984387-55984406 Msa0030050:intron 50.0%
GACTAGCGGAGACAGACCAA+AGG - chr1_1:55980808-55980827 Msa0030050:CDS 55.0%
TTCGCCTATGCAGGACCCTT+TGG - chr1_1:55981474-55981493 Msa0030050:intron 55.0%
ATACCTTCCACGCCGTCAAC+TGG + chr1_1:55982903-55982922 None:intergenic 55.0%
CACCATCGGGTGATTGTCGA+CGG - chr1_1:55983855-55983874 Msa0030050:CDS 55.0%
TACCGTCGACAATCACCCGA+TGG + chr1_1:55983860-55983879 None:intergenic 55.0%
ACCACCTCAATGATCGCCAG+TGG - chr1_1:55983998-55984017 Msa0030050:intron 55.0%
CCACCTCAATGATCGCCAGT+GGG - chr1_1:55983999-55984018 Msa0030050:intron 55.0%
GGTAAACTGAGGGTAGACCC+TGG - chr1_1:55984196-55984215 Msa0030050:intron 55.0%
AGGGTAGACCCTGGAAGAGA+TGG - chr1_1:55984205-55984224 Msa0030050:intron 55.0%
GTAGACCCTGGAAGAGATGG+AGG - chr1_1:55984208-55984227 Msa0030050:intron 55.0%
GCATTGCCTCCATCTCTTCC+AGG + chr1_1:55984217-55984236 None:intergenic 55.0%
GGAAGAGATGGAGGCAATGC+CGG - chr1_1:55984217-55984236 Msa0030050:intron 55.0%
! CTGGCCACTGTTTCTTGCAC+CGG + chr1_1:55984239-55984258 None:intergenic 55.0%
GCGATGACGTGCAACTGCTA+GGG - chr1_1:55984275-55984294 Msa0030050:intron 55.0%
CACGCCGTCAACTGGACAGT+AGG + chr1_1:55982895-55982914 None:intergenic 60.0%
CTACTGTCCAGTTGACGGCG+TGG - chr1_1:55982893-55982912 Msa0030050:intron 60.0%
TGTCCAGTTGACGGCGTGGA+AGG - chr1_1:55982897-55982916 Msa0030050:intron 60.0%
CCCACTGGCGATCATTGAGG+TGG + chr1_1:55984002-55984021 None:intergenic 60.0%
CGCGATGACGTGCAACTGCT+AGG - chr1_1:55984274-55984293 Msa0030050:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 55980727 55984886 55980727 ID=Msa0030050;Name=Msa0030050
chr1_1 mRNA 55980727 55984886 55980727 ID=Msa0030050-mRNA-1;Parent=Msa0030050;Name=Msa0030050-mRNA-1;_AED=0.08;_eAED=0.08;_QI=117|1|1|1|0.83|0.85|7|63|187
chr1_1 exon 55980727 55980847 55980727 ID=Msa0030050-mRNA-1:exon:16710;Parent=Msa0030050-mRNA-1
chr1_1 exon 55982511 55982596 55982511 ID=Msa0030050-mRNA-1:exon:16709;Parent=Msa0030050-mRNA-1
chr1_1 exon 55982695 55982765 55982695 ID=Msa0030050-mRNA-1:exon:16708;Parent=Msa0030050-mRNA-1
chr1_1 exon 55983819 55983894 55983819 ID=Msa0030050-mRNA-1:exon:16707;Parent=Msa0030050-mRNA-1
chr1_1 exon 55984047 55984148 55984047 ID=Msa0030050-mRNA-1:exon:16706;Parent=Msa0030050-mRNA-1
chr1_1 exon 55984503 55984601 55984503 ID=Msa0030050-mRNA-1:exon:16705;Parent=Msa0030050-mRNA-1
chr1_1 exon 55984698 55984886 55984698 ID=Msa0030050-mRNA-1:exon:16704;Parent=Msa0030050-mRNA-1
chr1_1 five_prime_UTR 55984770 55984886 55984770 ID=Msa0030050-mRNA-1:five_prime_utr;Parent=Msa0030050-mRNA-1
chr1_1 CDS 55984698 55984769 55984698 ID=Msa0030050-mRNA-1:cds;Parent=Msa0030050-mRNA-1
chr1_1 CDS 55984503 55984601 55984503 ID=Msa0030050-mRNA-1:cds;Parent=Msa0030050-mRNA-1
chr1_1 CDS 55984047 55984148 55984047 ID=Msa0030050-mRNA-1:cds;Parent=Msa0030050-mRNA-1
chr1_1 CDS 55983819 55983894 55983819 ID=Msa0030050-mRNA-1:cds;Parent=Msa0030050-mRNA-1
chr1_1 CDS 55982695 55982765 55982695 ID=Msa0030050-mRNA-1:cds;Parent=Msa0030050-mRNA-1
chr1_1 CDS 55982511 55982596 55982511 ID=Msa0030050-mRNA-1:cds;Parent=Msa0030050-mRNA-1
chr1_1 CDS 55980790 55980847 55980790 ID=Msa0030050-mRNA-1:cds;Parent=Msa0030050-mRNA-1
chr1_1 three_prime_UTR 55980727 55980789 55980727 ID=Msa0030050-mRNA-1:three_prime_utr;Parent=Msa0030050-mRNA-1
Gene Sequence

>Msa0030050

ATGTCTGACAAAGTCAACGATGCTTGGAACAAATATCTCCTTCAGCTTAAGCTTCATCCTCTCAGAACCAAGGCTATTACTTCATCAGTTCTAGCTGGTTTTAGTGATGCTGTTGCACAGAAGCTTTCTGGTGCTAAGAAGCTTCAGTTCAGAAGGATTCTTCTTTTCATGCTCTATGGTTTCGCCTATGCAGGACCCTTTGGACATTATCTCCATTTATTGATGGATAAACTTTTCAAGGGGAAGAAAGGCAATGAAACTGTTGCTAAGAAGGTGATCCTTGAGCAAATAACTAGTTCTCCATGGAACAACTTTTTGTTCATGATGTATTATGGCTTGATTATTGAAGGAAGACCTTGGAATATAGTCATGAACAAAGTCAAAAACGACTATCCTACTGTCCAGTTGACGGCGTGGAAGTTTTGGCCTATCGTTGGTTGGGTGAATTACCAGTATATGCCTTTGCAGTTCCGTGTTTTATTTCACAGCTTTGTTGGTTCATGCTGGGCAATCTTTCTGAATCTGAAAGCAAGGTCATCATCAGTTGCTATCAAGAAGGCCTAG

Protein sequence

>Msa0030050

MSDKVNDAWNKYLLQLKLHPLRTKAITSSVLAGFSDAVAQKLSGAKKLQFRRILLFMLYGFAYAGPFGHYLHLLMDKLFKGKKGNETVAKKVILEQITSSPWNNFLFMMYYGLIIEGRPWNIVMNKVKNDYPTVQLTAWKFWPIVGWVNYQYMPLQFRVLFHSFVGSCWAIFLNLKARSSSVAIKKA*