AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0081610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081610 MtrunA17_Chr1g0194181 100.000 57 0 0 36 92 6 62 3.19e-35 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081610 AT1G02475.1 71.591 88 25 0 3 90 131 218 1.80e-40 133
Msa0081610 AT4G01883.1 61.111 90 35 0 3 92 133 222 1.99e-33 115
Msa0081610 AT1G02470.1 56.818 88 38 0 3 90 132 219 2.76e-33 114
Msa0081610 AT1G02470.2 59.375 64 26 0 3 66 132 195 7.86e-23 87.4
Msa0081610 AT4G01883.2 61.538 65 25 0 3 67 133 197 6.15e-22 85.1
Msa0081610 AT4G01883.3 58.824 51 21 0 3 53 133 183 1.73e-15 68.2

Find 106 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAATCACATAAATTATTT+TGG 0.155684 1_2:-60233923 None:intergenic
TTATTTCATATTCCTCTAAT+AGG 0.198318 1_2:+60234844 Msa0081610:five_prime_UTR
AATGTTGTATATTTCTTAAT+TGG 0.238076 1_2:+60234948 Msa0081610:five_prime_UTR
TTAAGTTGCTTATCCAAATA+TGG 0.248820 1_2:+60234819 Msa0081610:five_prime_UTR
ATATGAAATAAGGCCATATT+TGG 0.258178 1_2:-60234832 None:intergenic
GTGCCACAAGGTTGGGATTC+CGG 0.262628 1_2:-60240132 None:intergenic
GATTGAATTTCATAAAGATT+TGG 0.263236 1_2:+60239976 Msa0081610:three_prime_UTR
TGCCACAAGGTTGGGATTCC+GGG 0.269934 1_2:-60240131 None:intergenic
TTAATTCCTCACGGCTCTTA+TGG 0.271438 1_2:+60240051 Msa0081610:three_prime_UTR
CACCTTAACAGTGGAAATAA+AGG 0.283136 1_2:-60235143 None:intergenic
CGAAAAGAAGCAAAAGTATC+AGG 0.296065 1_2:-60235708 None:intergenic
TATTTCATATTCCTCTAATA+GGG 0.313517 1_2:+60234845 Msa0081610:five_prime_UTR
GAAATAAAGGGCATCCATTC+CGG 0.313746 1_2:-60235130 None:intergenic
GGTATGGGCACATGACTTAT+AGG 0.324663 1_2:-60240308 None:intergenic
AGGCATGAAGAAGGACCTTT+TGG 0.331509 1_2:-60238560 None:intergenic
ATTGAATTTCATAAAGATTT+GGG 0.337700 1_2:+60239977 Msa0081610:three_prime_UTR
GCCCTTTATTTCCACTGTTA+AGG 0.341799 1_2:+60235141 Msa0081610:five_prime_UTR
TATTAGAGGAATATGAAATA+AGG 0.360118 1_2:-60234842 None:intergenic
GTCAGAATATTGAGTTCTCT+TGG 0.369456 1_2:+60235653 Msa0081610:five_prime_UTR
TATGAAATTCAATCAGTGTT+TGG 0.377594 1_2:-60239967 None:intergenic
GAAGCTTCTAGAAGTAAAAT+TGG 0.382494 1_2:-60234101 None:intergenic
GAAAATCCATTGGCGATCTC+TGG 0.391451 1_2:+60235799 Msa0081610:CDS
TTCAGCAGTGCCACAAGGTT+GGG 0.392936 1_2:-60240139 None:intergenic
TTAAGTAAACCTTCAAGAAA+TGG 0.393153 1_2:-60239842 None:intergenic
AAAATGGAGCCCTGAAAATC+AGG 0.393353 1_2:-60239915 None:intergenic
TTCCCCTGTCATGGAGTGGC+AGG 0.393458 1_2:+60234219 Msa0081610:five_prime_UTR
CTCTGGATGGTCTTCCCAAC+AGG 0.395898 1_2:+60235816 Msa0081610:CDS
TGCGACAGGTCAGGTTTGTC+TGG 0.396361 1_2:-60235604 None:intergenic
CTAAAACGAATGGAACAAAA+TGG 0.404476 1_2:-60234893 None:intergenic
AAAAGAATATTTCCGAATGC+AGG 0.408530 1_2:+60235041 Msa0081610:five_prime_UTR
AGGTTTACTTAAACGTGGTT+TGG 0.410150 1_2:+60239853 Msa0081610:CDS
AAATAAAGGGCATCCATTCC+GGG 0.416616 1_2:-60235129 None:intergenic
AAATTACAATACAGCTGGTA+TGG 0.422046 1_2:-60240324 None:intergenic
TCCTTGAAGTATAAGGCATT+TGG 0.430828 1_2:+60235631 Msa0081610:five_prime_UTR
TTATCATGCCAGTGTTGGTT+AGG 0.432396 1_2:+60240005 Msa0081610:three_prime_UTR
ACCAAATGCCTTATACTTCA+AGG 0.433774 1_2:-60235632 None:intergenic
TTCCGAATGCAGGGTTAAGA+TGG 0.435808 1_2:+60235051 Msa0081610:five_prime_UTR
TGCCTTTGTCAAACCATCTC+AGG 0.440630 1_2:+60240274 Msa0081610:three_prime_UTR
CTCCATCTTAACCCTGCATT+CGG 0.449371 1_2:-60235053 None:intergenic
GAAATACTCCAACGTCTTGA+AGG 0.449380 1_2:-60240191 None:intergenic
AAGGACCATTGCGACAGGTC+AGG 0.449994 1_2:-60235613 None:intergenic
GCAATGGTCCTTGAAGTATA+AGG 0.452028 1_2:+60235624 Msa0081610:five_prime_UTR
TTGGAAGAGAGTGAAGTTGA+GGG 0.452562 1_2:-60234124 None:intergenic
CAATCCTGCCACTCCATGAC+AGG 0.454346 1_2:-60234223 None:intergenic
GCCCTTGTCAGTTACCTGTT+GGG 0.457466 1_2:-60235830 None:intergenic
GCACTGCAACCATTTCTTGA+AGG 0.468212 1_2:+60239833 Msa0081610:CDS
TCATGCCAGTGTTGGTTAGG+TGG 0.476834 1_2:+60240008 Msa0081610:three_prime_UTR
CAATCATATGCTACAGAGAT+CGG 0.479919 1_2:-60235085 None:intergenic
CACGGCTCTTATGGAAATCA+TGG 0.485343 1_2:+60240060 Msa0081610:three_prime_UTR
ACCTTAACAGTGGAAATAAA+GGG 0.493335 1_2:-60235142 None:intergenic
TTTCAGCAGTGCCACAAGGT+TGG 0.499342 1_2:-60240140 None:intergenic
TGAGATGGTTTGACAAAGGC+AGG 0.502974 1_2:-60240272 None:intergenic
ATTGGAAGAGAGTGAAGTTG+AGG 0.504072 1_2:-60234125 None:intergenic
CTAGCATTGCGATTCAAAGA+TGG 0.510418 1_2:-60234064 None:intergenic
ATGTGATTCACAATTTCATA+CGG 0.520319 1_2:+60233935 Msa0081610:five_prime_UTR
TTCTGATCGTGAAGCCATCC+CGG 0.524092 1_2:+60235111 Msa0081610:five_prime_UTR
TACGGTTATCATGCCAGTGT+TGG 0.537477 1_2:+60240000 Msa0081610:three_prime_UTR
AATCATATGCTACAGAGATC+GGG 0.541146 1_2:-60235084 None:intergenic
GAAAGTAGGAAGCTGTGGTT+GGG 0.541318 1_2:-60235011 None:intergenic
AGAGTACTTACCGATGCCAC+TGG 0.543027 1_2:-60239069 None:intergenic
TGAAAGTAGGAAGCTGTGGT+TGG 0.543922 1_2:-60235012 None:intergenic
CGTCGCGGTCGGAGAGCAGA+AGG 0.545470 1_2:+60233962 Msa0081610:five_prime_UTR
GGAGCTTCTTAGTCCTGAGA+TGG 0.548161 1_2:-60240287 None:intergenic
TTGGCTTGCTCGTAATATGC+AGG 0.548555 1_2:+60235672 Msa0081610:five_prime_UTR
TCGTCTAATTCTAAAACGAA+TGG 0.551000 1_2:-60234903 None:intergenic
TCATATTCCTCTAATAGGGA+TGG 0.554439 1_2:+60234849 Msa0081610:five_prime_UTR
ACAGCTGACAGTCTCATATG+AGG 0.555155 1_2:+60239029 Msa0081610:intron
CGAATGCAGGGTTAAGATGG+AGG 0.555585 1_2:+60235054 Msa0081610:five_prime_UTR
AAAGAATATTTCCGAATGCA+GGG 0.557911 1_2:+60235042 Msa0081610:five_prime_UTR
GCTGTGCGATTCTATCCAAA+AGG 0.563786 1_2:+60238545 Msa0081610:CDS
ATCCATTGGCGATCTCTGGA+TGG 0.567929 1_2:+60235803 Msa0081610:CDS
CTCCAAATCAGAAAATCCAT+TGG 0.568507 1_2:+60235789 Msa0081610:CDS
ATTTGGAGTGGGCTGCAAGA+AGG 0.569657 1_2:-60235774 None:intergenic
ATTTCATAAAGATTTGGGTA+CGG 0.572664 1_2:+60239982 Msa0081610:three_prime_UTR
TGTACAAATTACAATACAGC+TGG 0.574526 1_2:-60240329 None:intergenic
AATTACAATACAGCTGGTAT+GGG 0.574781 1_2:-60240323 None:intergenic
ATCGTGAAGCCATCCCGGAA+TGG 0.574790 1_2:+60235116 Msa0081610:five_prime_UTR
ACTTCTACAAGGCATGAAGA+AGG 0.576876 1_2:-60238569 None:intergenic
TGGAAGAGAGTGAAGTTGAG+GGG 0.576892 1_2:-60234123 None:intergenic
GAGTCTGAAGAAGAAGCGAT+TGG 0.577061 1_2:-60234143 None:intergenic
TGTCTTTCTATACAATAATG+AGG 0.578333 1_2:+60240355 Msa0081610:three_prime_UTR
TCATTGAAAGTAGGAAGCTG+TGG 0.581390 1_2:-60235016 None:intergenic
AAATACTCCAACGTCTTGAA+GGG 0.584303 1_2:-60240190 None:intergenic
ACTTCAAGGACCATTGCGAC+AGG 0.589808 1_2:-60235618 None:intergenic
GACCATCCAGAGATCGCCAA+TGG 0.590298 1_2:-60235805 None:intergenic
TAAAATGCCTTACTTCTACA+AGG 0.595038 1_2:-60238580 None:intergenic
AGCAGAAGATATGTTAAACC+CGG 0.595234 1_2:+60240113 Msa0081610:three_prime_UTR
ACAAACCTGACCTGTCGCAA+TGG 0.598815 1_2:+60235608 Msa0081610:five_prime_UTR
TAAATCCACCTAACCAACAC+TGG 0.598962 1_2:-60240013 None:intergenic
GCCACTGGAGCTAAAAGTTG+AGG 0.601215 1_2:-60239054 None:intergenic
CTTGAAGGTTTACTTAAACG+TGG 0.606486 1_2:+60239848 Msa0081610:CDS
GCTTCTAGAAGTAAAATTGG+CGG 0.606768 1_2:-60234098 None:intergenic
GCTTAGAAGAAGAAGTGTGA+GGG 0.616908 1_2:-60234165 None:intergenic
AAGAAGCAAAAGTATCAGGT+AGG 0.620203 1_2:-60235704 None:intergenic
AATCCTGCCACTCCATGACA+GGG 0.620352 1_2:-60234222 None:intergenic
CGCTTAGAAGAAGAAGTGTG+AGG 0.627236 1_2:-60234166 None:intergenic
GTCCTGAGATGGTTTGACAA+AGG 0.631492 1_2:-60240276 None:intergenic
CATACGGACATCGTCGCGGT+CGG 0.639263 1_2:+60233951 Msa0081610:five_prime_UTR
AACCCGGAATCCCAACCTTG+TGG 0.642268 1_2:+60240129 Msa0081610:three_prime_UTR
TAAGCTACCCTTCAAGACGT+TGG 0.644508 1_2:+60240183 Msa0081610:three_prime_UTR
AAAGGGCATCCATTCCGGGA+TGG 0.645388 1_2:-60235125 None:intergenic
CTTGAATCGATGGAAAGTTG+AGG 0.645424 1_2:-60234191 None:intergenic
ATTTCATACGGACATCGTCG+CGG 0.684145 1_2:+60233947 Msa0081610:five_prime_UTR
GAGCAAGCACACCTTAACAG+TGG 0.691318 1_2:-60235152 None:intergenic
ATCCTGCCACTCCATGACAG+GGG 0.702823 1_2:-60234221 None:intergenic
TGATTTCCATAAGAGCCGTG+AGG 0.764444 1_2:-60240057 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAGTTTTTATGTAATTT+TGG - chr1_2:60237978-60237997 None:intergenic 10.0%
!! AATGTTGTATATTTCTTAAT+TGG + chr1_2:60234948-60234967 Msa0081610:five_prime_UTR 15.0%
!! TTGATTAACTATATTAACTT+TGG + chr1_2:60236184-60236203 Msa0081610:intron 15.0%
!! AAATGAAACAAAATAAAGAA+GGG - chr1_2:60236251-60236270 None:intergenic 15.0%
!! ATTGCAAATGTAAATAAAAA+TGG + chr1_2:60237019-60237038 Msa0081610:intron 15.0%
!! ATAAATAACTAATATGAAAG+AGG + chr1_2:60237545-60237564 Msa0081610:intron 15.0%
!! TAAATAACTAATATGAAAGA+GGG + chr1_2:60237546-60237565 Msa0081610:intron 15.0%
!! AATGTTCTAATTAATAATCA+AGG + chr1_2:60238099-60238118 Msa0081610:intron 15.0%
!! TCATCAATGTAAAATAAAAT+AGG - chr1_2:60238626-60238645 None:intergenic 15.0%
!!! AAAACATCACATTTTTATAA+AGG - chr1_2:60239097-60239116 None:intergenic 15.0%
!!! ATATATTGATAGTATTGATA+AGG + chr1_2:60239457-60239476 Msa0081610:intron 15.0%
!!! TATATTGATAGTATTGATAA+GGG + chr1_2:60239458-60239477 Msa0081610:intron 15.0%
!!! TGTATGTTCATTTTAAAAAA+TGG - chr1_2:60239934-60239953 None:intergenic 15.0%
!! ATTGAATTTCATAAAGATTT+GGG + chr1_2:60239977-60239996 Msa0081610:three_prime_UTR 15.0%
!!! GTGAATCACATAAATTATTT+TGG - chr1_2:60233926-60233945 None:intergenic 20.0%
!!! GCTTTTCTATTTTATATGTA+TGG + chr1_2:60234274-60234293 Msa0081610:intron 20.0%
!! AAAAAAAACTTCAGCAAAAT+CGG - chr1_2:60234426-60234445 None:intergenic 20.0%
!! CTCAAATTATTATAAACCAA+TGG - chr1_2:60234580-60234599 None:intergenic 20.0%
!!! CATTGGTTTATAATAATTTG+AGG + chr1_2:60234578-60234597 Msa0081610:intron 20.0%
!! TATTAGAGGAATATGAAATA+AGG - chr1_2:60234845-60234864 None:intergenic 20.0%
!! TTATTTCATATTCCTCTAAT+AGG + chr1_2:60234844-60234863 Msa0081610:five_prime_UTR 20.0%
!! TATTTCATATTCCTCTAATA+GGG + chr1_2:60234845-60234864 Msa0081610:five_prime_UTR 20.0%
!!! TTCTTTTTTTCATTGAAAGT+AGG - chr1_2:60235028-60235047 None:intergenic 20.0%
!! AATATCATAATCACTATTGT+TGG + chr1_2:60235204-60235223 Msa0081610:intron 20.0%
!! AATTGAAAATCTTTACCTTA+TGG + chr1_2:60235239-60235258 Msa0081610:intron 20.0%
!! TTAATGAAGAAATATGTACA+GGG - chr1_2:60235968-60235987 None:intergenic 20.0%
!! ATTAATGAAGAAATATGTAC+AGG - chr1_2:60235969-60235988 None:intergenic 20.0%
!! AATGAAACAAAATAAAGAAG+GGG - chr1_2:60236250-60236269 None:intergenic 20.0%
!! GAAATGAAACAAAATAAAGA+AGG - chr1_2:60236252-60236271 None:intergenic 20.0%
!! TAAATGAGTAATGAAAAAGA+AGG + chr1_2:60236353-60236372 Msa0081610:intron 20.0%
!! TATTAAGGATGTTTGTAAAA+TGG + chr1_2:60236970-60236989 Msa0081610:intron 20.0%
!! ATTAAGGATGTTTGTAAAAT+GGG + chr1_2:60236971-60236990 Msa0081610:intron 20.0%
!! AATGTAAATAAAAATGGTTC+AGG + chr1_2:60237025-60237044 Msa0081610:intron 20.0%
!! ACAAATTAACAAAATAGCTT+AGG + chr1_2:60237156-60237175 Msa0081610:intron 20.0%
!!! TTAAAACCTTTGATGATTAT+AGG - chr1_2:60237241-60237260 None:intergenic 20.0%
!! ATTTATACTGTTCAATCTAA+CGG - chr1_2:60237314-60237333 None:intergenic 20.0%
!!! TACTCTAAAATCAGTTATAT+TGG + chr1_2:60237370-60237389 Msa0081610:intron 20.0%
!!! ACTCTAAAATCAGTTATATT+GGG + chr1_2:60237371-60237390 Msa0081610:intron 20.0%
!! TTATACTGAATAAACTAGAA+TGG + chr1_2:60237422-60237441 Msa0081610:intron 20.0%
!!! TATGTTTTTGCTTTGATATT+AGG + chr1_2:60238151-60238170 Msa0081610:intron 20.0%
!! TTGATATTAGGTAAAACTTA+TGG + chr1_2:60238163-60238182 Msa0081610:intron 20.0%
!!! AGATTATGTTTTATGACAAA+CGG - chr1_2:60238363-60238382 None:intergenic 20.0%
!! TTAACTTCTAACATGAAATT+AGG + chr1_2:60238896-60238915 Msa0081610:intron 20.0%
!!! ATACCCAATTTTTCATTATT+TGG + chr1_2:60239150-60239169 Msa0081610:intron 20.0%
!!! TACCCAATTTTTCATTATTT+GGG + chr1_2:60239151-60239170 Msa0081610:intron 20.0%
!! CTTTCCTAATTTATTTGTTT+GGG + chr1_2:60239205-60239224 Msa0081610:intron 20.0%
!!! ATATTGATAGTATTGATAAG+GGG + chr1_2:60239459-60239478 Msa0081610:intron 20.0%
!!! TGTAGATAGTCTTATATTTA+AGG + chr1_2:60239520-60239539 Msa0081610:intron 20.0%
!! TTGTAAACGATCTTATATTT+AGG + chr1_2:60239555-60239574 Msa0081610:intron 20.0%
!! TGTAAACGATCTTATATTTA+GGG + chr1_2:60239556-60239575 Msa0081610:intron 20.0%
!!! TTCCAAAAAATATCAAGTTT+TGG + chr1_2:60239650-60239669 Msa0081610:intron 20.0%
!!! AACCAAAACTTGATATTTTT+TGG - chr1_2:60239655-60239674 None:intergenic 20.0%
!! GATTGAATTTCATAAAGATT+TGG + chr1_2:60239976-60239995 Msa0081610:three_prime_UTR 20.0%
!! AGGAATTAACACTTAAAAAT+GGG - chr1_2:60240040-60240059 None:intergenic 20.0%
! ATGTGATTCACAATTTCATA+CGG + chr1_2:60233935-60233954 Msa0081610:five_prime_UTR 25.0%
! TATTATAAACCAATGGAAAG+AGG - chr1_2:60234573-60234592 None:intergenic 25.0%
!! ACTGTTTTCATAATCTATCT+TGG - chr1_2:60234696-60234715 None:intergenic 25.0%
!! TTAAGTTGCTTATCCAAATA+TGG + chr1_2:60234819-60234838 Msa0081610:five_prime_UTR 25.0%
! ATATGAAATAAGGCCATATT+TGG - chr1_2:60234835-60234854 None:intergenic 25.0%
!!! ATTAGCCTTGTAATTAATCA+GGG - chr1_2:60235187-60235206 None:intergenic 25.0%
!!! TATTAGCCTTGTAATTAATC+AGG - chr1_2:60235188-60235207 None:intergenic 25.0%
!!! TTTGATTTTATGCAAAACGT+TGG + chr1_2:60235562-60235581 Msa0081610:intron 25.0%
! AATCAAATGTTTCCTAATGT+TGG - chr1_2:60235915-60235934 None:intergenic 25.0%
!!! TTTTAATTTAGCAGATCACT+TGG - chr1_2:60236089-60236108 None:intergenic 25.0%
!!! TACACTTGATAATGCTTAAT+TGG + chr1_2:60236290-60236309 Msa0081610:intron 25.0%
! CATTACTCATTTATGAGAAA+TGG - chr1_2:60236346-60236365 None:intergenic 25.0%
!!! TGTTTGATAATGTATGTTCT+AGG + chr1_2:60236512-60236531 Msa0081610:intron 25.0%
!! CCAACATTTTATCCATTTAT+AGG - chr1_2:60236653-60236672 None:intergenic 25.0%
! CCTATAAATGGATAAAATGT+TGG + chr1_2:60236650-60236669 Msa0081610:intron 25.0%
!! TAAAATGTTGGCTATATAAG+TGG + chr1_2:60236662-60236681 Msa0081610:intron 25.0%
!! AAAATGTTGGCTATATAAGT+GGG + chr1_2:60236663-60236682 Msa0081610:intron 25.0%
! TTATTCTTAGGCATAATGTT+GGG - chr1_2:60236798-60236817 None:intergenic 25.0%
! TTTATTCTTAGGCATAATGT+TGG - chr1_2:60236799-60236818 None:intergenic 25.0%
! AGCTCAAAATGTTTATTCTT+AGG - chr1_2:60236810-60236829 None:intergenic 25.0%
! TTAAGGATGTTTGTAAAATG+GGG + chr1_2:60236972-60236991 Msa0081610:intron 25.0%
! AAAAATGGTTCAGGTAAAAT+TGG + chr1_2:60237034-60237053 Msa0081610:intron 25.0%
! GGAATTATAATCAGAAAAGA+GGG - chr1_2:60237201-60237220 None:intergenic 25.0%
! GGTTGTGATAATTGAATTAA+CGG - chr1_2:60237266-60237285 None:intergenic 25.0%
! TCATAAAGATTAAGAGTTAC+AGG + chr1_2:60237448-60237467 Msa0081610:intron 25.0%
!!! ATGTAATTTTGGTTGAGTTT+AGG - chr1_2:60237967-60237986 None:intergenic 25.0%
! TAATAATCAAGGTTGCATTA+TGG + chr1_2:60238110-60238129 Msa0081610:intron 25.0%
! TTACTTTGATGCCATATTTA+GGG + chr1_2:60238681-60238700 Msa0081610:intron 25.0%
! CATATTTAGGGGAAAAAATT+GGG + chr1_2:60238693-60238712 Msa0081610:intron 25.0%
! TAGAATGAGAAACTTACAAT+TGG - chr1_2:60238728-60238747 None:intergenic 25.0%
!!! GTGATGTTTTTTACAACTTT+AGG + chr1_2:60239107-60239126 Msa0081610:intron 25.0%
! AAAAATTGGGTATTCTTTCA+CGG - chr1_2:60239143-60239162 None:intergenic 25.0%
!! ACCCAATTTTTCATTATTTG+GGG + chr1_2:60239152-60239171 Msa0081610:intron 25.0%
! TCCCCAAATAATGAAAAATT+GGG - chr1_2:60239156-60239175 None:intergenic 25.0%
!! AATTTTTCATTATTTGGGGA+CGG + chr1_2:60239156-60239175 Msa0081610:intron 25.0%
! GCTTTCCTAATTTATTTGTT+TGG + chr1_2:60239204-60239223 Msa0081610:intron 25.0%
! AGAACCCAAACAAATAAATT+AGG - chr1_2:60239212-60239231 None:intergenic 25.0%
!!! AGACTAGTTTACAAAAATCA+CGG + chr1_2:60239329-60239348 Msa0081610:intron 25.0%
! TTTGTACACAAATGACAATT+TGG - chr1_2:60239406-60239425 None:intergenic 25.0%
! TTACTAACTACTCAATTTGA+AGG + chr1_2:60239683-60239702 Msa0081610:intron 25.0%
! TTAAGTAAACCTTCAAGAAA+TGG - chr1_2:60239845-60239864 None:intergenic 25.0%
! TATGAAATTCAATCAGTGTT+TGG - chr1_2:60239970-60239989 None:intergenic 25.0%
! ATTTCATAAAGATTTGGGTA+CGG + chr1_2:60239982-60240001 Msa0081610:three_prime_UTR 25.0%
! GAGGAATTAACACTTAAAAA+TGG - chr1_2:60240041-60240060 None:intergenic 25.0%
!!! TTTTAAGTGTTAATTCCTCA+CGG + chr1_2:60240042-60240061 Msa0081610:three_prime_UTR 25.0%
! TGTCTTTCTATACAATAATG+AGG + chr1_2:60240355-60240374 Msa0081610:three_prime_UTR 25.0%
! GAAGCTTCTAGAAGTAAAAT+TGG - chr1_2:60234104-60234123 None:intergenic 30.0%
TAGAAAAGCGAGAGAAAAAA+AGG - chr1_2:60234263-60234282 None:intergenic 30.0%
CTCTTTGTAATATATGCACA+AGG + chr1_2:60234453-60234472 Msa0081610:intron 30.0%
GAATATCTATGCTAATTGCA+AGG - chr1_2:60234547-60234566 None:intergenic 30.0%
!! GTTTTCACCTTATTTCCATA+AGG + chr1_2:60234667-60234686 Msa0081610:intron 30.0%
AAAAATTCCATCCCTATTAG+AGG - chr1_2:60234859-60234878 None:intergenic 30.0%
CTAAAACGAATGGAACAAAA+TGG - chr1_2:60234896-60234915 None:intergenic 30.0%
!! TCGTCTAATTCTAAAACGAA+TGG - chr1_2:60234906-60234925 None:intergenic 30.0%
AAAAGAATATTTCCGAATGC+AGG + chr1_2:60235041-60235060 Msa0081610:five_prime_UTR 30.0%
AAAGAATATTTCCGAATGCA+GGG + chr1_2:60235042-60235061 Msa0081610:five_prime_UTR 30.0%
ACCTTAACAGTGGAAATAAA+GGG - chr1_2:60235145-60235164 None:intergenic 30.0%
TGTAATTAATCAGGGTTAGA+AGG - chr1_2:60235179-60235198 None:intergenic 30.0%
TCTAACCCTGATTAATTACA+AGG + chr1_2:60235179-60235198 Msa0081610:intron 30.0%
! TAGATTAAACTGTGTTGATG+AGG + chr1_2:60235308-60235327 Msa0081610:intron 30.0%
!! TGCCTTTTCTTTGGAAATTT+CGG + chr1_2:60235885-60235904 Msa0081610:intron 30.0%
TACCGAAATTTCCAAAGAAA+AGG - chr1_2:60235890-60235909 None:intergenic 30.0%
GATAAACTACAGTAATGCTT+GGG - chr1_2:60236018-60236037 None:intergenic 30.0%
AGATAAACTACAGTAATGCT+TGG - chr1_2:60236019-60236038 None:intergenic 30.0%
! GCACATCATCAAGTATTTTT+AGG - chr1_2:60236059-60236078 None:intergenic 30.0%
!! TCTTTTTGTTTACCGAACAA+AGG - chr1_2:60236135-60236154 None:intergenic 30.0%
TTTGTTCGGTAAACAAAAAG+AGG + chr1_2:60236134-60236153 Msa0081610:intron 30.0%
CATTATCAAGTGTAACCTAA+TGG - chr1_2:60236284-60236303 None:intergenic 30.0%
TGAGTAATGAAAAAGAAGGA+AGG + chr1_2:60236357-60236376 Msa0081610:intron 30.0%
GAGTAATGAAAAAGAAGGAA+GGG + chr1_2:60236358-60236377 Msa0081610:intron 30.0%
GTTCCCAGAGTAAAAAAAAA+CGG + chr1_2:60236401-60236420 Msa0081610:intron 30.0%
CAAAATACTGCTATAAGAAC+TGG - chr1_2:60236560-60236579 None:intergenic 30.0%
! TTCTTATAGCAGTATTTTGC+TGG + chr1_2:60236561-60236580 Msa0081610:intron 30.0%
AATACGTAAAAGCTGGATAT+TGG - chr1_2:60236596-60236615 None:intergenic 30.0%
! AATATCCAGCTTTTACGTAT+TGG + chr1_2:60236595-60236614 Msa0081610:intron 30.0%
TATCCATTTATAGGCAATGT+GGG - chr1_2:60236644-60236663 None:intergenic 30.0%
TTATCCATTTATAGGCAATG+TGG - chr1_2:60236645-60236664 None:intergenic 30.0%
! AAATGTTGGCTATATAAGTG+GGG + chr1_2:60236664-60236683 Msa0081610:intron 30.0%
TATTCTTAGGCATAATGTTG+GGG - chr1_2:60236797-60236816 None:intergenic 30.0%
TTTATAAGATTCGTATCCAC+AGG + chr1_2:60236913-60236932 Msa0081610:intron 30.0%
TTATAAGATTCGTATCCACA+GGG + chr1_2:60236914-60236933 Msa0081610:intron 30.0%
CGGGAATGTCATTATTATTA+AGG + chr1_2:60236955-60236974 Msa0081610:intron 30.0%
TAAGGATGTTTGTAAAATGG+GGG + chr1_2:60236973-60236992 Msa0081610:intron 30.0%
GGGAATTATAATCAGAAAAG+AGG - chr1_2:60237202-60237221 None:intergenic 30.0%
TTATAATTCCCTAATCCCTT+AGG + chr1_2:60237211-60237230 Msa0081610:intron 30.0%
ATGATTATAGGTTCACCTAA+GGG - chr1_2:60237229-60237248 None:intergenic 30.0%
ATCTCTTAACCTAATCACAA+AGG + chr1_2:60237499-60237518 Msa0081610:intron 30.0%
AGGGATTCATTACATGAAAT+TGG + chr1_2:60237565-60237584 Msa0081610:intron 30.0%
! CATTACATGAAATTGGTAAC+CGG + chr1_2:60237572-60237591 Msa0081610:intron 30.0%
CTTTAGTCACGTAAAAAATC+GGG - chr1_2:60237831-60237850 None:intergenic 30.0%
GCTTTAGTCACGTAAAAAAT+CGG - chr1_2:60237832-60237851 None:intergenic 30.0%
! AGTTTGAAGCTACAAAAGAA+CGG - chr1_2:60237932-60237951 None:intergenic 30.0%
TAGAACATTTCACTGCTATA+AGG - chr1_2:60238088-60238107 None:intergenic 30.0%
AAAATGCAATGCTTCAATCA+TGG + chr1_2:60238243-60238262 Msa0081610:intron 30.0%
TTTAATGCAAACAGAGAACA+TGG - chr1_2:60238488-60238507 None:intergenic 30.0%
TAATTGTCTGATTTCTCATG+TGG + chr1_2:60238515-60238534 Msa0081610:intron 30.0%
TAAAATGCCTTACTTCTACA+AGG - chr1_2:60238583-60238602 None:intergenic 30.0%
CTTACTTTGATGCCATATTT+AGG + chr1_2:60238680-60238699 Msa0081610:intron 30.0%
TACTTTGATGCCATATTTAG+GGG + chr1_2:60238682-60238701 Msa0081610:intron 30.0%
!!! CCAATTTTTTCCCCTAAATA+TGG - chr1_2:60238695-60238714 None:intergenic 30.0%
CCATATTTAGGGGAAAAAAT+TGG + chr1_2:60238692-60238711 Msa0081610:intron 30.0%
GAGAAACTTACAATTGGTAT+TGG - chr1_2:60238722-60238741 None:intergenic 30.0%
! ATGTTAGAAGTTAAAAGCGT+GGG - chr1_2:60238890-60238909 None:intergenic 30.0%
GTCCCCAAATAATGAAAAAT+TGG - chr1_2:60239157-60239176 None:intergenic 30.0%
CGGATAAAAAGTAAGAAAAG+TGG + chr1_2:60239176-60239195 Msa0081610:intron 30.0%
CTAAATGAACAACTCACTTT+AGG + chr1_2:60239239-60239258 Msa0081610:intron 30.0%
AACGATCTTATATTTAGGGA+TGG + chr1_2:60239560-60239579 Msa0081610:intron 30.0%
ATCTTATATTTAGGGATGGA+GGG + chr1_2:60239564-60239583 Msa0081610:intron 30.0%
TGAAAAGTGAGATTAACGAA+TGG - chr1_2:60239717-60239736 None:intergenic 30.0%
! AAATGATTGTCCTGATTTTC+AGG + chr1_2:60239905-60239924 Msa0081610:exon 30.0%
! AATGATTGTCCTGATTTTCA+GGG + chr1_2:60239906-60239925 Msa0081610:exon 30.0%
AATTACAATACAGCTGGTAT+GGG - chr1_2:60240326-60240345 None:intergenic 30.0%
AAATTACAATACAGCTGGTA+TGG - chr1_2:60240327-60240346 None:intergenic 30.0%
TGTACAAATTACAATACAGC+TGG - chr1_2:60240332-60240351 None:intergenic 30.0%
TGAAAAAGAGCTTATGACGA+CGG - chr1_2:60234038-60234057 None:intergenic 35.0%
! GCTTCTAGAAGTAAAATTGG+CGG - chr1_2:60234101-60234120 None:intergenic 35.0%
AGTTATCATCACAAGTGCTT+TGG - chr1_2:60234615-60234634 None:intergenic 35.0%
TTGGAGACCTTATGGAAATA+AGG - chr1_2:60234677-60234696 None:intergenic 35.0%
AATCTATCTTGGAGACCTTA+TGG - chr1_2:60234685-60234704 None:intergenic 35.0%
TCATATTCCTCTAATAGGGA+TGG + chr1_2:60234849-60234868 Msa0081610:five_prime_UTR 35.0%
!!! CAGTTTTTAGCACTTCTGTT+TGG + chr1_2:60234974-60234993 Msa0081610:five_prime_UTR 35.0%
AATCATATGCTACAGAGATC+GGG - chr1_2:60235087-60235106 None:intergenic 35.0%
CAATCATATGCTACAGAGAT+CGG - chr1_2:60235088-60235107 None:intergenic 35.0%
CACCTTAACAGTGGAAATAA+AGG - chr1_2:60235146-60235165 None:intergenic 35.0%
TCACATGCTATGATTCCATA+AGG - chr1_2:60235257-60235276 None:intergenic 35.0%
ACAGTTTAATCTAGTCTGAC+AGG - chr1_2:60235301-60235320 None:intergenic 35.0%
! TCCTTGAAGTATAAGGCATT+TGG + chr1_2:60235631-60235650 Msa0081610:five_prime_UTR 35.0%
ACCAAATGCCTTATACTTCA+AGG - chr1_2:60235635-60235654 None:intergenic 35.0%
GTCAGAATATTGAGTTCTCT+TGG + chr1_2:60235653-60235672 Msa0081610:five_prime_UTR 35.0%
!! AAGAAGCAAAAGTATCAGGT+AGG - chr1_2:60235707-60235726 None:intergenic 35.0%
!! CGAAAAGAAGCAAAAGTATC+AGG - chr1_2:60235711-60235730 None:intergenic 35.0%
!!! TGGATTTTCTGATTTGGAGT+GGG - chr1_2:60235788-60235807 None:intergenic 35.0%
!!! ATGGATTTTCTGATTTGGAG+TGG - chr1_2:60235789-60235808 None:intergenic 35.0%
CTCCAAATCAGAAAATCCAT+TGG + chr1_2:60235789-60235808 Msa0081610:CDS 35.0%
!! GTGCTTTATTGCCTTTTCTT+TGG + chr1_2:60235876-60235895 Msa0081610:intron 35.0%
AATTTCGGTAGTCCAACATT+AGG + chr1_2:60235900-60235919 Msa0081610:intron 35.0%
TCTTGCCATTAACCTTTGTT+CGG + chr1_2:60236120-60236139 Msa0081610:intron 35.0%
GTTTACCGAACAAAGGTTAA+TGG - chr1_2:60236128-60236147 None:intergenic 35.0%
TGTAACCTAATGGCATGTTT+CGG - chr1_2:60236274-60236293 None:intergenic 35.0%
!!! CAGCCGTTTTTTTTTACTCT+GGG - chr1_2:60236407-60236426 None:intergenic 35.0%
!!! TCAGCCGTTTTTTTTTACTC+TGG - chr1_2:60236408-60236427 None:intergenic 35.0%
GTTTACTAATTCAGTAGCGT+AGG + chr1_2:60236441-60236460 Msa0081610:intron 35.0%
AGGTATTCTGATATATGTGC+TGG + chr1_2:60236476-60236495 Msa0081610:intron 35.0%
! ATAGCAGTATTTTGCTGGTA+AGG + chr1_2:60236566-60236585 Msa0081610:intron 35.0%
AAAAGCCAATACGTAAAAGC+TGG - chr1_2:60236603-60236622 None:intergenic 35.0%
! CCTTAAGGCATTAGGTATAT+AGG - chr1_2:60236693-60236712 None:intergenic 35.0%
CCTATATACCTAATGCCTTA+AGG + chr1_2:60236690-60236709 Msa0081610:intron 35.0%
! TACCTAATGCCTTAAGGTTT+TGG + chr1_2:60236696-60236715 Msa0081610:intron 35.0%
! ACCTAATGCCTTAAGGTTTT+GGG + chr1_2:60236697-60236716 Msa0081610:intron 35.0%
AAGGATGTTTGTAAAATGGG+GGG + chr1_2:60236974-60236993 Msa0081610:intron 35.0%
TGGTTTGAGAAATGATAGAG+AGG + chr1_2:60237054-60237073 Msa0081610:intron 35.0%
CGTTCGTAAACTTAAGAAAC+AGG - chr1_2:60237122-60237141 None:intergenic 35.0%
ATAATCAGAAAAGAGGGCTT+AGG - chr1_2:60237195-60237214 None:intergenic 35.0%
GATGATTATAGGTTCACCTA+AGG - chr1_2:60237230-60237249 None:intergenic 35.0%
GGTGAACCTATAATCATCAA+AGG + chr1_2:60237232-60237251 Msa0081610:intron 35.0%
! TCAATCTAACGGACAATCTA+GGG - chr1_2:60237303-60237322 None:intergenic 35.0%
! TTCAATCTAACGGACAATCT+AGG - chr1_2:60237304-60237323 None:intergenic 35.0%
TAGCTAGATCCTTTGTGATT+AGG - chr1_2:60237511-60237530 None:intergenic 35.0%
!! TAACCGGATTTGAGTTTTGA+TGG + chr1_2:60237588-60237607 Msa0081610:intron 35.0%
AGACCATCAAAACTCAAATC+CGG - chr1_2:60237594-60237613 None:intergenic 35.0%
!! TGGAGAAAGAAACTGACTTT+TGG - chr1_2:60237643-60237662 None:intergenic 35.0%
!! AAAGAACGGATTTTGAGTAC+TGG - chr1_2:60237918-60237937 None:intergenic 35.0%
TTATATGACCTAGTGTCATC+AGG + chr1_2:60238006-60238025 Msa0081610:intron 35.0%
!!! ACTGCAGATCTCTTGTTTTA+AGG + chr1_2:60238045-60238064 Msa0081610:intron 35.0%
!!! CTGCAGATCTCTTGTTTTAA+GGG + chr1_2:60238046-60238065 Msa0081610:intron 35.0%
!!! TCTTGTTTTAAGGGAGTAGA+AGG + chr1_2:60238055-60238074 Msa0081610:intron 35.0%
AGTGGCTAGAAAACACATTT+CGG + chr1_2:60238303-60238322 Msa0081610:intron 35.0%
CATGTTAGAAGTTAAAAGCG+TGG - chr1_2:60238891-60238910 None:intergenic 35.0%
TGCTTGACTAAAAGCTGAAT+GGG - chr1_2:60238975-60238994 None:intergenic 35.0%
! AGTCTTGTAAAACGAACGAA+GGG - chr1_2:60239314-60239333 None:intergenic 35.0%
!! TAGTCTTGTAAAACGAACGA+AGG - chr1_2:60239315-60239334 None:intergenic 35.0%
GATCTTATATTTAGGGATGG+AGG + chr1_2:60239563-60239582 Msa0081610:intron 35.0%
!! TCACTTTTCACCAGTTACAA+TGG + chr1_2:60239727-60239746 Msa0081610:intron 35.0%
AGATAAGAGTCCATTGTAAC+TGG - chr1_2:60239740-60239759 None:intergenic 35.0%
CTTGAAGGTTTACTTAAACG+TGG + chr1_2:60239848-60239867 Msa0081610:CDS 35.0%
AGGTTTACTTAAACGTGGTT+TGG + chr1_2:60239853-60239872 Msa0081610:CDS 35.0%
! TTTGTAGCTTTTTGCAAACG+TGG - chr1_2:60239888-60239907 None:intergenic 35.0%
AGCAGAAGATATGTTAAACC+CGG + chr1_2:60240113-60240132 Msa0081610:three_prime_UTR 35.0%
AAATACTCCAACGTCTTGAA+GGG - chr1_2:60240193-60240212 None:intergenic 35.0%
CTAGCATTGCGATTCAAAGA+TGG - chr1_2:60234067-60234086 None:intergenic 40.0%
TTGGAAGAGAGTGAAGTTGA+GGG - chr1_2:60234127-60234146 None:intergenic 40.0%
ATTGGAAGAGAGTGAAGTTG+AGG - chr1_2:60234128-60234147 None:intergenic 40.0%
! GCTTAGAAGAAGAAGTGTGA+GGG - chr1_2:60234168-60234187 None:intergenic 40.0%
CTTGAATCGATGGAAAGTTG+AGG - chr1_2:60234194-60234213 None:intergenic 40.0%
ATATTCGTGCCTCTTTCCAT+TGG + chr1_2:60234561-60234580 Msa0081610:intron 40.0%
TCATTGAAAGTAGGAAGCTG+TGG - chr1_2:60235019-60235038 None:intergenic 40.0%
!! AAATAAAGGGCATCCATTCC+GGG - chr1_2:60235132-60235151 None:intergenic 40.0%
!! GAAATAAAGGGCATCCATTC+CGG - chr1_2:60235133-60235152 None:intergenic 40.0%
! GCCCTTTATTTCCACTGTTA+AGG + chr1_2:60235141-60235160 Msa0081610:five_prime_UTR 40.0%
TCTGACAGGAAAAGAGTCAA+AGG - chr1_2:60235287-60235306 None:intergenic 40.0%
GTCTGGCAATATCTGCAAAA+TGG - chr1_2:60235590-60235609 None:intergenic 40.0%
GCAATGGTCCTTGAAGTATA+AGG + chr1_2:60235624-60235643 Msa0081610:five_prime_UTR 40.0%
!! CGCCAATGGATTTTCTGATT+TGG - chr1_2:60235794-60235813 None:intergenic 40.0%
CATTTCCGAAACATGCCATT+AGG + chr1_2:60236266-60236285 Msa0081610:intron 40.0%
AGCGTAGGTCACTTAAAAGA+AGG + chr1_2:60236456-60236475 Msa0081610:intron 40.0%
ACTGCTATAAGAACTGGTCA+AGG - chr1_2:60236554-60236573 None:intergenic 40.0%
AGTCCCACATTGCCTATAAA+TGG + chr1_2:60236638-60236657 Msa0081610:intron 40.0%
! ACCCAAAACCTTAAGGCATT+AGG - chr1_2:60236701-60236720 None:intergenic 40.0%
!!! TAATGCCTTAAGGTTTTGGG+TGG + chr1_2:60236700-60236719 Msa0081610:intron 40.0%
GAGTCTGACATGATATGAGT+AGG + chr1_2:60236841-60236860 Msa0081610:intron 40.0%
GGACTGTTTCAACTTCTACT+CGG + chr1_2:60236935-60236954 Msa0081610:intron 40.0%
GACTGTTTCAACTTCTACTC+GGG + chr1_2:60236936-60236955 Msa0081610:intron 40.0%
GAAATGATAGAGAGGTGACT+AGG + chr1_2:60237062-60237081 Msa0081610:intron 40.0%
AAAAGAGGGCTTAGGATCAA+GGG - chr1_2:60237187-60237206 None:intergenic 40.0%
TAGGTTCACCTAAGGGATTA+GGG - chr1_2:60237222-60237241 None:intergenic 40.0%
ATAGGTTCACCTAAGGGATT+AGG - chr1_2:60237223-60237242 None:intergenic 40.0%
ACAAAGGATCTAGCTACTCA+TGG + chr1_2:60237515-60237534 Msa0081610:intron 40.0%
!!! AAGAAACTGACTTTTGGAGC+TGG - chr1_2:60237637-60237656 None:intergenic 40.0%
TCTCCAAAATTTCGAACCCT+TGG + chr1_2:60237657-60237676 Msa0081610:intron 40.0%
! AAGCCAAGGGTTCGAAATTT+TGG - chr1_2:60237663-60237682 None:intergenic 40.0%
CATAGAAACCTGATGACACT+AGG - chr1_2:60238017-60238036 None:intergenic 40.0%
GGTTGTGTTATCTTTGTGCT+TGG + chr1_2:60238184-60238203 Msa0081610:intron 40.0%
TGTTATCTTTGTGCTTGGAC+TGG + chr1_2:60238189-60238208 Msa0081610:intron 40.0%
GGCTTAAACAAGATACAGCT+AGG - chr1_2:60238279-60238298 None:intergenic 40.0%
! ATCTTGTTTAAGCCATCCAG+TGG + chr1_2:60238285-60238304 Msa0081610:intron 40.0%
!! GAAATGTGTTTTCTAGCCAC+TGG - chr1_2:60238304-60238323 None:intergenic 40.0%
ACTTCTACAAGGCATGAAGA+AGG - chr1_2:60238572-60238591 None:intergenic 40.0%
CTTCATGCCTTGTAGAAGTA+AGG + chr1_2:60238573-60238592 Msa0081610:intron 40.0%
AACTAGCTGCAAGTTCCTAT+TGG + chr1_2:60238758-60238777 Msa0081610:intron 40.0%
ACTAGCTGCAAGTTCCTATT+GGG + chr1_2:60238759-60238778 Msa0081610:intron 40.0%
TTCCTTAGTGTGCATACATG+TGG - chr1_2:60238834-60238853 None:intergenic 40.0%
GCTTGACTAAAAGCTGAATG+GGG - chr1_2:60238974-60238993 None:intergenic 40.0%
GTGCTTGACTAAAAGCTGAA+TGG - chr1_2:60238976-60238995 None:intergenic 40.0%
GAGACTGTCAGCTGTAATAA+TGG - chr1_2:60239024-60239043 None:intergenic 40.0%
!! GAACGAAGGGAGTATTGATT+TGG - chr1_2:60239301-60239320 None:intergenic 40.0%
GGAGAGGAGGAAAATACAAA+GGG - chr1_2:60239797-60239816 None:intergenic 40.0%
TGGAGAGGAGGAAAATACAA+AGG - chr1_2:60239798-60239817 None:intergenic 40.0%
! TTGTATTTTCCTCCTCTCCA+TGG + chr1_2:60239798-60239817 Msa0081610:intron 40.0%
AAAATGGAGCCCTGAAAATC+AGG - chr1_2:60239918-60239937 None:intergenic 40.0%
!! TTATCATGCCAGTGTTGGTT+AGG + chr1_2:60240005-60240024 Msa0081610:three_prime_UTR 40.0%
TAAATCCACCTAACCAACAC+TGG - chr1_2:60240016-60240035 None:intergenic 40.0%
TTAATTCCTCACGGCTCTTA+TGG + chr1_2:60240051-60240070 Msa0081610:three_prime_UTR 40.0%
GAAATACTCCAACGTCTTGA+AGG - chr1_2:60240194-60240213 None:intergenic 40.0%
ATTTCATACGGACATCGTCG+CGG + chr1_2:60233947-60233966 Msa0081610:five_prime_UTR 45.0%
TGGAAGAGAGTGAAGTTGAG+GGG - chr1_2:60234126-60234145 None:intergenic 45.0%
GAGTCTGAAGAAGAAGCGAT+TGG - chr1_2:60234146-60234165 None:intergenic 45.0%
! CGCTTAGAAGAAGAAGTGTG+AGG - chr1_2:60234169-60234188 None:intergenic 45.0%
GGGAAAAACGCTTGAATCGA+TGG - chr1_2:60234204-60234223 None:intergenic 45.0%
ATCACAAGTGCTTTGGTGAG+TGG - chr1_2:60234608-60234627 None:intergenic 45.0%
GAAAGTAGGAAGCTGTGGTT+GGG - chr1_2:60235014-60235033 None:intergenic 45.0%
TGAAAGTAGGAAGCTGTGGT+TGG - chr1_2:60235015-60235034 None:intergenic 45.0%
TTCCGAATGCAGGGTTAAGA+TGG + chr1_2:60235051-60235070 Msa0081610:five_prime_UTR 45.0%
CTCCATCTTAACCCTGCATT+CGG - chr1_2:60235056-60235075 None:intergenic 45.0%
!! TTGGCTTGCTCGTAATATGC+AGG + chr1_2:60235672-60235691 Msa0081610:five_prime_UTR 45.0%
GAAAATCCATTGGCGATCTC+TGG + chr1_2:60235799-60235818 Msa0081610:CDS 45.0%
TTCCCAACAGGTAACTGACA+AGG + chr1_2:60235828-60235847 Msa0081610:intron 45.0%
TCCCAACAGGTAACTGACAA+GGG + chr1_2:60235829-60235848 Msa0081610:intron 45.0%
AACTACAGTAATGCTTGGGC+AGG - chr1_2:60236014-60236033 None:intergenic 45.0%
AGGTTAGCAAGAGAAGAGAG+TGG + chr1_2:60236154-60236173 Msa0081610:intron 45.0%
GGTGAATTCCTTCCTTACAC+TGG + chr1_2:60236379-60236398 Msa0081610:intron 45.0%
! TTACTCTGGGAACCAGTGTA+AGG - chr1_2:60236394-60236413 None:intergenic 45.0%
CATCTCCACCCAAAACCTTA+AGG - chr1_2:60236708-60236727 None:intergenic 45.0%
AGAAGTTGAAACAGTCCCTG+TGG - chr1_2:60236932-60236951 None:intergenic 45.0%
GTGCATTGAGGCAATTGGTT+TGG + chr1_2:60236996-60237015 Msa0081610:intron 45.0%
GAAAAGAGGGCTTAGGATCA+AGG - chr1_2:60237188-60237207 None:intergenic 45.0%
! TCTAACGGACAATCTAGGGA+TGG - chr1_2:60237299-60237318 None:intergenic 45.0%
GCTGGGATCTGCAATTAATG+AGG - chr1_2:60237764-60237783 None:intergenic 45.0%
ATTAATTGCAGATCCCAGCC+TGG + chr1_2:60237765-60237784 Msa0081610:intron 45.0%
!! TAGCATCGGGCTACGATTTT+GGG - chr1_2:60237867-60237886 None:intergenic 45.0%
!! ATAGCATCGGGCTACGATTT+TGG - chr1_2:60237868-60237887 None:intergenic 45.0%
!! TGTGTTTTCTAGCCACTGGA+TGG - chr1_2:60238300-60238319 None:intergenic 45.0%
TCTGATTTCTCATGTGGCAG+AGG + chr1_2:60238521-60238540 Msa0081610:intron 45.0%
GCTGTGCGATTCTATCCAAA+AGG + chr1_2:60238545-60238564 Msa0081610:CDS 45.0%
! AGGCATGAAGAAGGACCTTT+TGG - chr1_2:60238563-60238582 None:intergenic 45.0%
CACCACATGTATGCACACTA+AGG + chr1_2:60238829-60238848 Msa0081610:intron 45.0%
TAAAAGCTGAATGGGGACAG+GGG - chr1_2:60238967-60238986 None:intergenic 45.0%
CTAAAAGCTGAATGGGGACA+GGG - chr1_2:60238968-60238987 None:intergenic 45.0%
ACTAAAAGCTGAATGGGGAC+AGG - chr1_2:60238969-60238988 None:intergenic 45.0%
ACAGCTGACAGTCTCATATG+AGG + chr1_2:60239029-60239048 Msa0081610:intron 45.0%
!!! TCCTCAACTTTTAGCTCCAG+TGG + chr1_2:60239053-60239072 Msa0081610:CDS 45.0%
!!! ACTTTTAGCTCCAGTGGCAT+CGG + chr1_2:60239059-60239078 Msa0081610:CDS 45.0%
CAGATTATACCATGGAGAGG+AGG - chr1_2:60239810-60239829 None:intergenic 45.0%
CTGCAGATTATACCATGGAG+AGG - chr1_2:60239813-60239832 None:intergenic 45.0%
CTCTCCATGGTATAATCTGC+AGG + chr1_2:60239811-60239830 Msa0081610:intron 45.0%
AGTGCCTGCAGATTATACCA+TGG - chr1_2:60239818-60239837 None:intergenic 45.0%
GCACTGCAACCATTTCTTGA+AGG + chr1_2:60239833-60239852 Msa0081610:CDS 45.0%
TACGGTTATCATGCCAGTGT+TGG + chr1_2:60240000-60240019 Msa0081610:three_prime_UTR 45.0%
TGATTTCCATAAGAGCCGTG+AGG - chr1_2:60240060-60240079 None:intergenic 45.0%
CACGGCTCTTATGGAAATCA+TGG + chr1_2:60240060-60240079 Msa0081610:three_prime_UTR 45.0%
! GTATTTTCAGCAGTGCCACA+AGG - chr1_2:60240147-60240166 None:intergenic 45.0%
TAAGCTACCCTTCAAGACGT+TGG + chr1_2:60240183-60240202 Msa0081610:three_prime_UTR 45.0%
TGAGATGGTTTGACAAAGGC+AGG - chr1_2:60240275-60240294 None:intergenic 45.0%
TGCCTTTGTCAAACCATCTC+AGG + chr1_2:60240274-60240293 Msa0081610:three_prime_UTR 45.0%
GTCCTGAGATGGTTTGACAA+AGG - chr1_2:60240279-60240298 None:intergenic 45.0%
GGTATGGGCACATGACTTAT+AGG - chr1_2:60240311-60240330 None:intergenic 45.0%
! CAAGCGTTTTTCCCCTGTCA+TGG + chr1_2:60234210-60234229 Msa0081610:five_prime_UTR 50.0%
! GTTTTTCCCCTGTCATGGAG+TGG + chr1_2:60234215-60234234 Msa0081610:five_prime_UTR 50.0%
AATCCTGCCACTCCATGACA+GGG - chr1_2:60234225-60234244 None:intergenic 50.0%
CGAATGCAGGGTTAAGATGG+AGG + chr1_2:60235054-60235073 Msa0081610:five_prime_UTR 50.0%
TTCTGATCGTGAAGCCATCC+CGG + chr1_2:60235111-60235130 Msa0081610:five_prime_UTR 50.0%
GAGCAAGCACACCTTAACAG+TGG - chr1_2:60235155-60235174 None:intergenic 50.0%
ACAAACCTGACCTGTCGCAA+TGG + chr1_2:60235608-60235627 Msa0081610:five_prime_UTR 50.0%
ACTTCAAGGACCATTGCGAC+AGG - chr1_2:60235621-60235640 None:intergenic 50.0%
!! ATTTGGAGTGGGCTGCAAGA+AGG - chr1_2:60235777-60235796 None:intergenic 50.0%
ATCCATTGGCGATCTCTGGA+TGG + chr1_2:60235803-60235822 Msa0081610:CDS 50.0%
GCCCTTGTCAGTTACCTGTT+GGG - chr1_2:60235833-60235852 None:intergenic 50.0%
TGCCCTTGTCAGTTACCTGT+TGG - chr1_2:60235834-60235853 None:intergenic 50.0%
TCTGGGAACCAGTGTAAGGA+AGG - chr1_2:60236390-60236409 None:intergenic 50.0%
! TCTTGTGGTCCTGGAGCATT+TGG + chr1_2:60236741-60236760 Msa0081610:intron 50.0%
! CTTGTGGTCCTGGAGCATTT+GGG + chr1_2:60236742-60236761 Msa0081610:intron 50.0%
CATAATGTTGGGGAGTCCAG+GGG - chr1_2:60236787-60236806 None:intergenic 50.0%
GCATAATGTTGGGGAGTCCA+GGG - chr1_2:60236788-60236807 None:intergenic 50.0%
! GTAAAATGGGGGGTGCATTG+AGG + chr1_2:60236984-60237003 Msa0081610:intron 50.0%
!! TCTAGGGATGGAGCGTTGTT+AGG - chr1_2:60237287-60237306 None:intergenic 50.0%
TGGAGAACTGGAGAGAAGGT+TGG - chr1_2:60237617-60237636 None:intergenic 50.0%
!!! GACTTTTGGAGCTGGAGAAC+TGG - chr1_2:60237629-60237648 None:intergenic 50.0%
!! TTTTAGAGATGCGCCAGGCT+GGG - chr1_2:60237781-60237800 None:intergenic 50.0%
!! ATTTTAGAGATGCGCCAGGC+TGG - chr1_2:60237782-60237801 None:intergenic 50.0%
!! GCCTGGCGCATCTCTAAAAT+CGG + chr1_2:60237782-60237801 Msa0081610:intron 50.0%
!! TCCGATTTTAGAGATGCGCC+AGG - chr1_2:60237786-60237805 None:intergenic 50.0%
CGTAGCCCGATGCTATAGAT+CGG + chr1_2:60237872-60237891 Msa0081610:intron 50.0%
GTGCTCCGATCTATAGCATC+GGG - chr1_2:60237880-60237899 None:intergenic 50.0%
CGTGCTCCGATCTATAGCAT+CGG - chr1_2:60237881-60237900 None:intergenic 50.0%
AGGCAATTAGGTGGCCCAAT+AGG - chr1_2:60238776-60238795 None:intergenic 50.0%
GATAGGGACAGGCAATTAGG+TGG - chr1_2:60238785-60238804 None:intergenic 50.0%
CCTGATAGGGACAGGCAATT+AGG - chr1_2:60238788-60238807 None:intergenic 50.0%
CCTAATTGCCTGTCCCTATC+AGG + chr1_2:60238785-60238804 Msa0081610:intron 50.0%
! AGTCATGCACTGGCCTGATA+GGG - chr1_2:60238801-60238820 None:intergenic 50.0%
! TAGTCATGCACTGGCCTGAT+AGG - chr1_2:60238802-60238821 None:intergenic 50.0%
TATCAGGCCAGTGCATGACT+AGG + chr1_2:60238801-60238820 Msa0081610:intron 50.0%
GCCACTGGAGCTAAAAGTTG+AGG - chr1_2:60239057-60239076 None:intergenic 50.0%
! AGAGTACTTACCGATGCCAC+TGG - chr1_2:60239072-60239091 None:intergenic 50.0%
!! AGTGGCATCGGTAAGTACTC+TGG + chr1_2:60239071-60239090 Msa0081610:intron 50.0%
!! TCATGCCAGTGTTGGTTAGG+TGG + chr1_2:60240008-60240027 Msa0081610:three_prime_UTR 50.0%
TTCAGCAGTGCCACAAGGTT+GGG - chr1_2:60240142-60240161 None:intergenic 50.0%
TTTCAGCAGTGCCACAAGGT+TGG - chr1_2:60240143-60240162 None:intergenic 50.0%
GGAGCTTCTTAGTCCTGAGA+TGG - chr1_2:60240290-60240309 None:intergenic 50.0%
ATCCTGCCACTCCATGACAG+GGG - chr1_2:60234224-60234243 None:intergenic 55.0%
CAATCCTGCCACTCCATGAC+AGG - chr1_2:60234226-60234245 None:intergenic 55.0%
ATCGTGAAGCCATCCCGGAA+TGG + chr1_2:60235116-60235135 Msa0081610:five_prime_UTR 55.0%
!! AAAGGGCATCCATTCCGGGA+TGG - chr1_2:60235128-60235147 None:intergenic 55.0%
TGCGACAGGTCAGGTTTGTC+TGG - chr1_2:60235607-60235626 None:intergenic 55.0%
AAGGACCATTGCGACAGGTC+AGG - chr1_2:60235616-60235635 None:intergenic 55.0%
GACCATCCAGAGATCGCCAA+TGG - chr1_2:60235808-60235827 None:intergenic 55.0%
CTCTGGATGGTCTTCCCAAC+AGG + chr1_2:60235816-60235835 Msa0081610:CDS 55.0%
TGCAGCATCTCCCTCTCTTG+TGG + chr1_2:60236726-60236745 Msa0081610:intron 55.0%
ATCTCCCTCTCTTGTGGTCC+TGG + chr1_2:60236732-60236751 Msa0081610:intron 55.0%
TGCTCCAGGACCACAAGAGA+GGG - chr1_2:60236739-60236758 None:intergenic 55.0%
ATGCTCCAGGACCACAAGAG+AGG - chr1_2:60236740-60236759 None:intergenic 55.0%
ACAACAGGCCCAAATGCTCC+AGG - chr1_2:60236753-60236772 None:intergenic 55.0%
GGCATAATGTTGGGGAGTCC+AGG - chr1_2:60236789-60236808 None:intergenic 55.0%
GAGCTGGAGAACTGGAGAGA+AGG - chr1_2:60237621-60237640 None:intergenic 55.0%
CCAGCTGCACTCTAAGCCAA+GGG - chr1_2:60237676-60237695 None:intergenic 55.0%
CCTTGGCTTAGAGTGCAGCT+GGG + chr1_2:60237674-60237693 Msa0081610:intron 55.0%
TGTGCCACCTAGTCATGCAC+TGG - chr1_2:60238811-60238830 None:intergenic 55.0%
AACCCGGAATCCCAACCTTG+TGG + chr1_2:60240129-60240148 Msa0081610:three_prime_UTR 55.0%
TGCCACAAGGTTGGGATTCC+GGG - chr1_2:60240134-60240153 None:intergenic 55.0%
GTGCCACAAGGTTGGGATTC+CGG - chr1_2:60240135-60240154 None:intergenic 55.0%
CATACGGACATCGTCGCGGT+CGG + chr1_2:60233951-60233970 Msa0081610:five_prime_UTR 60.0%
TTCCCCTGTCATGGAGTGGC+AGG + chr1_2:60234219-60234238 Msa0081610:five_prime_UTR 60.0%
GGGGTCACGGGAGAAACAAC+AGG - chr1_2:60236768-60236787 None:intergenic 60.0%
!! GTTGTTTCTCCCGTGACCCC+TGG + chr1_2:60236768-60236787 Msa0081610:intron 60.0%
! GGGGGGTGCATTGAGGCAAT+TGG + chr1_2:60236991-60237010 Msa0081610:intron 60.0%
CCCTTGGCTTAGAGTGCAGC+TGG + chr1_2:60237673-60237692 Msa0081610:intron 60.0%
CCCAGCTGCACTCTAAGCCA+AGG - chr1_2:60237677-60237696 None:intergenic 60.0%
! TGCACTGGCCTGATAGGGAC+AGG - chr1_2:60238796-60238815 None:intergenic 60.0%
CAGGCCAGTGCATGACTAGG+TGG + chr1_2:60238804-60238823 Msa0081610:intron 60.0%
GGGGACAGGGGAGGAGAAAA+TGG - chr1_2:60238955-60238974 None:intergenic 60.0%
AAGCTGAATGGGGACAGGGG+AGG - chr1_2:60238964-60238983 None:intergenic 60.0%
TTGGGGAGTCCAGGGGTCAC+GGG - chr1_2:60236780-60236799 None:intergenic 65.0%
GTTGGGGAGTCCAGGGGTCA+CGG - chr1_2:60236781-60236800 None:intergenic 65.0%
CGTCGCGGTCGGAGAGCAGA+AGG + chr1_2:60233962-60233981 Msa0081610:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 60233910 60240392 60233910 ID=Msa0081610;Name=Msa0081610
chr1_2 mRNA 60233910 60240392 60233910 ID=Msa0081610-mRNA-1;Parent=Msa0081610;Name=Msa0081610-mRNA-1;_AED=0.12;_eAED=0.12;_QI=827|1|1|1|0.4|0.5|6|482|92
chr1_2 exon 60233910 60234248 60233910 ID=Msa0081610-mRNA-1:exon:19606;Parent=Msa0081610-mRNA-1
chr1_2 exon 60234811 60235162 60234811 ID=Msa0081610-mRNA-1:exon:19607;Parent=Msa0081610-mRNA-1
chr1_2 exon 60235598 60235837 60235598 ID=Msa0081610-mRNA-1:exon:19608;Parent=Msa0081610-mRNA-1
chr1_2 exon 60238541 60238589 60238541 ID=Msa0081610-mRNA-1:exon:19609;Parent=Msa0081610-mRNA-1
chr1_2 exon 60239033 60239080 60239033 ID=Msa0081610-mRNA-1:exon:19610;Parent=Msa0081610-mRNA-1
chr1_2 exon 60239833 60240392 60239833 ID=Msa0081610-mRNA-1:exon:19611;Parent=Msa0081610-mRNA-1
chr1_2 five_prime_UTR 60233910 60234248 60233910 ID=Msa0081610-mRNA-1:five_prime_utr;Parent=Msa0081610-mRNA-1
chr1_2 five_prime_UTR 60234811 60235162 60234811 ID=Msa0081610-mRNA-1:five_prime_utr;Parent=Msa0081610-mRNA-1
chr1_2 five_prime_UTR 60235598 60235733 60235598 ID=Msa0081610-mRNA-1:five_prime_utr;Parent=Msa0081610-mRNA-1
chr1_2 CDS 60235734 60235837 60235734 ID=Msa0081610-mRNA-1:cds;Parent=Msa0081610-mRNA-1
chr1_2 CDS 60238541 60238589 60238541 ID=Msa0081610-mRNA-1:cds;Parent=Msa0081610-mRNA-1
chr1_2 CDS 60239033 60239080 60239033 ID=Msa0081610-mRNA-1:cds;Parent=Msa0081610-mRNA-1
chr1_2 CDS 60239833 60239910 60239833 ID=Msa0081610-mRNA-1:cds;Parent=Msa0081610-mRNA-1
chr1_2 three_prime_UTR 60239911 60240392 60239911 ID=Msa0081610-mRNA-1:three_prime_utr;Parent=Msa0081610-mRNA-1
Gene Sequence

>Msa0081610

ATGCTCTTTACAATTAGTATTTTGTATTCATGTTTTATTGCCTTCTTGCAGCCCACTCCAAATCAGAAAATCCATTGGCGATCTCTGGATGGTCTTCCCAACAGAGGTGCTGTGCGATTCTATCCAAAAGGTCCTTCTTCATGCCTTGTAGAACTGACAGTCTCATATGAGGTTCCTCAACTTTTAGCTCCAGTGGCATCGGCACTGCAACCATTTCTTGAAGGTTTACTTAAACGTGGTTTGGAAAGATTTGCCACGTTTGCAAAAAGCTACAAATGA

Protein sequence

>Msa0081610

MLFTISILYSCFIAFLQPTPNQKIHWRSLDGLPNRGAVRFYPKGPSSCLVELTVSYEVPQLLAPVASALQPFLEGLLKRGLERFATFAKSYK*