AlfalfaGEDB | Msa0173480

M. sativa cultivar zhongmu-4 / Msa0173480

KEGG: K08245
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF00026.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0173480	sp\|P42211\|ASPRX_ORYSJ	57.843	510	179	5	1	488	1	496	0.0	609

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0173480	A0A072VYH6	94.882	508	6	1	1	488	1	508	0.0	979

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0173480	Msa0620970	0.913992	3.231613e-84	-8.615850e-47
Msa0173480	Msa0714380	0.811981	5.334493e-51	-8.615850e-47
Msa0173480	Msa0878880	0.802956	4.385398e-49	-8.615850e-47
Msa0173480	Msa1376760	0.921351	4.001169e-88	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0173480	MtrunA17_Chr1g0193211	94.882	508	6	1	1	488	1	508	979
Msa0173480	MtrunA17_Chr7g0271351	75.442	509	99	3	1	488	1	504	801
Msa0173480	MtrunA17_Chr4g0069631	51.176	510	214	5	1	488	1	497	550
Msa0173480	MtrunA17_Chr4g0075181	54.023	522	203	7	1	488	1	519	544
Msa0173480	MtrunA17_Chr2g0288851	55.513	517	194	6	1	488	1	510	540
Msa0173480	MtrunA17_Chr2g0302421	50.394	508	221	6	6	488	1	502	527

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0173480	AT1G11910.1	59.091	484	171	4	26	488	29	506	0.0	580
Msa0173480	AT1G11910.2	59.091	484	171	4	26	488	40	517	0.0	579
Msa0173480	AT1G62290.1	56.818	484	187	3	26	487	29	512	0.0	568
Msa0173480	AT1G62290.2	56.818	484	187	3	26	487	29	512	0.0	568
Msa0173480	AT4G04460.1	52.686	484	202	4	26	488	31	508	0.0	529
Msa0173480	AT1G62290.5	55.459	458	182	3	26	461	29	486	0.0	525
Msa0173480	AT4G04460.2	52.479	484	199	5	26	488	31	504	0.0	522
Msa0173480	AT1G62290.6	54.439	428	173	3	26	431	29	456	8.33e-166	476
Msa0173480	AT1G62290.4	54.439	428	173	3	26	431	29	456	8.33e-166	476
Msa0173480	AT1G62290.3	53.985	389	157	3	26	392	29	417	1.87e-145	423

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Find 135 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTACCACAAGTCTCACT+AGG	0.604215	1_4:+58773913	None:intergenic
AAAGGAAATACTACCTTCAC+GGG	0.535086	1_4:+58776623	None:intergenic
AAAGTCAAGCAGACCTGTGT+TGG	0.487437	1_4:-58777301	Msa0173480:CDS
AAATAAAGAAACGAGTGTAT+TGG	0.447128	1_4:-58778546	None:intergenic
AACACATAAACAACAAAAGT+AGG	0.547843	1_4:+58778457	None:intergenic
AACCATGCTATTGGAGCTGA+AGG	0.532160	1_4:-58775483	Msa0173480:CDS
AACCCAAAGGTTCGAACTTC+CGG	0.323172	1_4:+58777146	None:intergenic
AACTACATGATACTTTAACA+TGG	0.631393	1_4:+58773575	None:intergenic
AAGCATACCAAAAGTGAAGG+TGG	0.592222	1_4:+58778394	None:intergenic
AAGCTGCCTAGTGAGACTTG+TGG	0.732793	1_4:-58773919	Msa0173480:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATAAACAACAAAAGTAGGA+AGG	+	chr1_4:58773660-58773679	None:intergenic	30.0%
CTGAAAAGAAAAGGAATCAA+AGG	+	chr1_4:58773943-58773962	None:intergenic	30.0%
GCTTCAAAACTGAAAAGAAA+AGG	+	chr1_4:58773952-58773971	None:intergenic	30.0%
ATAAATCCATAGGAGAAAGA+AGG	+	chr1_4:58774725-58774744	None:intergenic	30.0%
GCATTCAAATAATCCTTCAA+AGG	+	chr1_4:58774890-58774909	None:intergenic	30.0%
TATTATGGAGAGATTGGAAT+TGG	-	chr1_4:58774914-58774933	Msa0173480:CDS	30.0%
ATATGACATTAAATGTCTGC+GGG	+	chr1_4:58774946-58774965	None:intergenic	30.0%
GAATATGAGTAATGAGAAGA+TGG	+	chr1_4:58775172-58775191	None:intergenic	30.0%
GGACATTAGAACGTATTAAA+TGG	+	chr1_4:58775248-58775267	None:intergenic	30.0%
CCTGAATTGACAAGTAAAAA+AGG	+	chr1_4:58775269-58775288	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	58773578	58778562	58773578	ID=Msa0173480;Name=Msa0173480
chr1_4	mRNA	58773578	58778562	58773578	ID=Msa0173480-mRNA-1;Parent=Msa0173480;Name=Msa0173480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=170\|0.92\|0.86\|1\|0.92\|0.86\|15\|284\|488
chr1_4	exon	58773578	58773608	58773578	ID=Msa0173480-mRNA-1:exon:18295;Parent=Msa0173480-mRNA-1
chr1_4	exon	58773678	58774015	58773678	ID=Msa0173480-mRNA-1:exon:18294;Parent=Msa0173480-mRNA-1
chr1_4	exon	58774128	58774216	58774128	ID=Msa0173480-mRNA-1:exon:18293;Parent=Msa0173480-mRNA-1
chr1_4	exon	58774601	58774720	58774601	ID=Msa0173480-mRNA-1:exon:18292;Parent=Msa0173480-mRNA-1
chr1_4	exon	58774819	58774972	58774819	ID=Msa0173480-mRNA-1:exon:18291;Parent=Msa0173480-mRNA-1
chr1_4	exon	58775230	58775294	58775230	ID=Msa0173480-mRNA-1:exon:18290;Parent=Msa0173480-mRNA-1
chr1_4	exon	58775410	58775523	58775410	ID=Msa0173480-mRNA-1:exon:18289;Parent=Msa0173480-mRNA-1
chr1_4	exon	58775602	58775666	58775602	ID=Msa0173480-mRNA-1:exon:18288;Parent=Msa0173480-mRNA-1
chr1_4	exon	58775900	58775939	58775900	ID=Msa0173480-mRNA-1:exon:18287;Parent=Msa0173480-mRNA-1
chr1_4	exon	58776031	58776162	58776031	ID=Msa0173480-mRNA-1:exon:18286;Parent=Msa0173480-mRNA-1
chr1_4	exon	58776572	58776661	58776572	ID=Msa0173480-mRNA-1:exon:18285;Parent=Msa0173480-mRNA-1
chr1_4	exon	58776758	58776852	58776758	ID=Msa0173480-mRNA-1:exon:18284;Parent=Msa0173480-mRNA-1
chr1_4	exon	58776978	58777038	58776978	ID=Msa0173480-mRNA-1:exon:18283;Parent=Msa0173480-mRNA-1
chr1_4	exon	58777122	58777487	58777122	ID=Msa0173480-mRNA-1:exon:18282;Parent=Msa0173480-mRNA-1
chr1_4	exon	58778402	58778562	58778402	ID=Msa0173480-mRNA-1:exon:18281;Parent=Msa0173480-mRNA-1
chr1_4	five_prime_UTR	58778402	58778562	58778402	ID=Msa0173480-mRNA-1:five_prime_utr;Parent=Msa0173480-mRNA-1
chr1_4	five_prime_UTR	58777479	58777487	58777479	ID=Msa0173480-mRNA-1:five_prime_utr;Parent=Msa0173480-mRNA-1
chr1_4	CDS	58777122	58777478	58777122	ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4	CDS	58776978	58777038	58776978	ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4	CDS	58776758	58776852	58776758	ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4	CDS	58776572	58776661	58776572	ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4	CDS	58776031	58776162	58776031	ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4	CDS	58775900	58775939	58775900	ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4	CDS	58775602	58775666	58775602	ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4	CDS	58775410	58775523	58775410	ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4	CDS	58775230	58775294	58775230	ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4	CDS	58774819	58774972	58774819	ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4	CDS	58774601	58774720	58774601	ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4	CDS	58774128	58774216	58774128	ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4	CDS	58773931	58774015	58773931	ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4	three_prime_UTR	58773678	58773930	58773678	ID=Msa0173480-mRNA-1:three_prime_utr;Parent=Msa0173480-mRNA-1
chr1_4	three_prime_UTR	58773578	58773608	58773578	ID=Msa0173480-mRNA-1:three_prime_utr;Parent=Msa0173480-mRNA-1

Gene Sequence

>Msa0173480

ATGGCGAACAAGTATTTGTGGGTTGCTTTCTGTTTCTGGGCCTTAACATGCTCACTTCTTCCTTCTTTCTCCTATGGATTTATGAGAATTGATTTGAAGAAGAGAACTCTAGATCTTGATAGCATTAGAGCTGCTAGGATGGTAAGAGAAAAGCTAAAGTCAAGCAGACCTGTGTTGGGTGCATATGATCAGTATACCAGTAAATCATCCGACGATGCCATAGTACCTTTGAAGGATTATTTGAATGCACAATATTATGGAGAGATTGGAATTGGTACACCCCCGCAGACATTTAATGTCATATTTGATACCGGAAGTTCGAACCTTTGGGTTCCATCGTCAAAGTGCTATTTTTCTATTGCCTGCTACACCCATCATTGGTACAAGGCAAAGAAATCCAAAACATATACTAAGAATGGAACATCATGTAAAATAGCATATGGATCTGGAGCAATATCTGGTTTTTTCAGTCAAGATAATGTTAAACTTGGCGATGTTGTTGTCAAGGATGTGGATTTCATTGAGGCTACCCGTGAAGGTAGTATTTCCTTTGTGCTGGCAAAGTTTGATGGATTACTTGGGCTTGGCTTTCAGGAGATCTCTGTGTTCTCTTTTTGGCTCAATGGGGATCCAAAAGCGAAAAAGGGTGGTGAGCTAATTCTTGGGGGTGTTGATCCAAATCACTTCAAAGGAAAACATACATATGTCCCAGTCACTCAAAAGGGCTATTGGCAGATTGAAATGGGCGACTTTTTCATTGGAGGTCTCTCAACAGGCGTTTGCGAAGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCATTGCTTGCTGGTCCAACTACTGTTGTGACTGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTGAGTGTAGAATGTAAGGAAATTGTTACTGAATATGGAGAGTTGATATGGGATCTCTTGGTAGCAGGGGTACGGCCTGGTGATGTGTGTTCACAAGTTGGTTTATGTGGTGGCAAGAGGGTACAATCTAAGAGCATGGGGATTGAGATGGTGACTGAAAAGGAACAGGGAGAGTTGTCTGCTAAAGATACTGCTTTGTGTTCTTCCTGTCAGATGCTTGTGATTTGGATCCAGAATCAACTCAAACGAAAGTCAACCAAGGATAAAATATTCAACTACGTAAATCAACTCTGCGAGAGCTTGCCAAGTCCAAATGGAGAGTCGGTAGTAGACTGTAATAGCATTTATCAATTGCCAAACATTTCGTTCACTATCGGAGAGAAATCTTTCGTCCTCAGTCCAGAGCAGTATATTTTGAAAACTGGAGAAGGCATTGCAACTGTCTGTCTTAGTGGGTTTATTGCTTTTGACATTCCTCCTCCAAGGGGTCCTCTCTGGATTCTTGGCGATGTTTTTATGAGGGTATATCACACTGTCTTTGACTATGGAAATCTCCAACTTGGTTTTGCTGAAGCTGCCTAG

Protein sequence

>Msa0173480

MANKYLWVAFCFWALTCSLLPSFSYGFMRIDLKKRTLDLDSIRAARMVREKLKSSRPVLGAYDQYTSKSSDDAIVPLKDYLNAQYYGEIGIGTPPQTFNVIFDTGSSNLWVPSSKCYFSIACYTHHWYKAKKSKTYTKNGTSCKIAYGSGAISGFFSQDNVKLGDVVVKDVDFIEATREGSISFVLAKFDGLLGLGFQEISVFSFWLNGDPKAKKGGELILGGVDPNHFKGKHTYVPVTQKGYWQIEMGDFFIGGLSTGVCEGGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSVECKEIVTEYGELIWDLLVAGVRPGDVCSQVGLCGGKRVQSKSMGIEMVTEKEQGELSAKDTALCSSCQMLVIWIQNQLKRKSTKDKIFNYVNQLCESLPSPNGESVVDCNSIYQLPNISFTIGEKSFVLSPEQYILKTGEGIATVCLSGFIAFDIPPPRGPLWILGDVFMRVYHTVFDYGNLQLGFAEAA*