Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173480 | sp|P42211|ASPRX_ORYSJ | 57.843 | 510 | 179 | 5 | 1 | 488 | 1 | 496 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173480 | A0A072VYH6 | 94.882 | 508 | 6 | 1 | 1 | 488 | 1 | 508 | 0.0 | 979 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0173480 | Msa0620970 | 0.913992 | 3.231613e-84 | -8.615850e-47 |
| Msa0173480 | Msa0714380 | 0.811981 | 5.334493e-51 | -8.615850e-47 |
| Msa0173480 | Msa0878880 | 0.802956 | 4.385398e-49 | -8.615850e-47 |
| Msa0173480 | Msa1376760 | 0.921351 | 4.001169e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173480 | MtrunA17_Chr1g0193211 | 94.882 | 508 | 6 | 1 | 1 | 488 | 1 | 508 | 0.0 | 979 |
| Msa0173480 | MtrunA17_Chr7g0271351 | 75.442 | 509 | 99 | 3 | 1 | 488 | 1 | 504 | 0.0 | 801 |
| Msa0173480 | MtrunA17_Chr4g0069631 | 51.176 | 510 | 214 | 5 | 1 | 488 | 1 | 497 | 0.0 | 550 |
| Msa0173480 | MtrunA17_Chr4g0075181 | 54.023 | 522 | 203 | 7 | 1 | 488 | 1 | 519 | 0.0 | 544 |
| Msa0173480 | MtrunA17_Chr2g0288851 | 55.513 | 517 | 194 | 6 | 1 | 488 | 1 | 510 | 0.0 | 540 |
| Msa0173480 | MtrunA17_Chr2g0302421 | 50.394 | 508 | 221 | 6 | 6 | 488 | 1 | 502 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173480 | AT1G11910.1 | 59.091 | 484 | 171 | 4 | 26 | 488 | 29 | 506 | 0.0 | 580 |
| Msa0173480 | AT1G11910.2 | 59.091 | 484 | 171 | 4 | 26 | 488 | 40 | 517 | 0.0 | 579 |
| Msa0173480 | AT1G62290.1 | 56.818 | 484 | 187 | 3 | 26 | 487 | 29 | 512 | 0.0 | 568 |
| Msa0173480 | AT1G62290.2 | 56.818 | 484 | 187 | 3 | 26 | 487 | 29 | 512 | 0.0 | 568 |
| Msa0173480 | AT4G04460.1 | 52.686 | 484 | 202 | 4 | 26 | 488 | 31 | 508 | 0.0 | 529 |
| Msa0173480 | AT1G62290.5 | 55.459 | 458 | 182 | 3 | 26 | 461 | 29 | 486 | 0.0 | 525 |
| Msa0173480 | AT4G04460.2 | 52.479 | 484 | 199 | 5 | 26 | 488 | 31 | 504 | 0.0 | 522 |
| Msa0173480 | AT1G62290.6 | 54.439 | 428 | 173 | 3 | 26 | 431 | 29 | 456 | 8.33e-166 | 476 |
| Msa0173480 | AT1G62290.4 | 54.439 | 428 | 173 | 3 | 26 | 431 | 29 | 456 | 8.33e-166 | 476 |
| Msa0173480 | AT1G62290.3 | 53.985 | 389 | 157 | 3 | 26 | 392 | 29 | 417 | 1.87e-145 | 423 |
| Msa0173480 | AT4G22050.1 | 37.247 | 247 | 131 | 5 | 69 | 293 | 30 | 274 | 3.50e-41 | 151 |
| Msa0173480 | AT4G22050.1 | 33.571 | 140 | 68 | 7 | 354 | 488 | 234 | 353 | 1.18e-11 | 66.6 |
| Msa0173480 | AT1G69100.1 | 36.220 | 254 | 131 | 10 | 77 | 302 | 39 | 289 | 3.15e-37 | 140 |
| Msa0173480 | AT1G69100.2 | 36.220 | 254 | 131 | 10 | 77 | 302 | 47 | 297 | 4.13e-37 | 140 |
Find 135 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGGTTGCTTTCTGTTTC+TGG | 0.027211 | 1_4:-58777440 | Msa0173480:CDS |
| ATTACTTGGGCTTGGCTTTC+AGG | 0.101496 | 1_4:-58776580 | Msa0173480:CDS |
| TATTTGAATGCACAATATTA+TGG | 0.213005 | 1_4:-58777219 | Msa0173480:CDS |
| TGGGGATCCAAAAGCGAAAA+AGG | 0.245272 | 1_4:-58776120 | Msa0173480:CDS |
| TTCTACCCCACCTTCACTTT+TGG | 0.252482 | 1_4:-58778401 | Msa0173480:intron |
| AAGGAAATTGTTACTGAATA+TGG | 0.254211 | 1_4:-58775441 | Msa0173480:CDS |
| ACTTTCGTTTGAGTTGATTC+TGG | 0.257963 | 1_4:+58774854 | None:intergenic |
| CCTGTCAGATGCTTGTGATT+TGG | 0.258700 | 1_4:-58774879 | Msa0173480:CDS |
| CTGAATATGGAGAGTTGATA+TGG | 0.273202 | 1_4:-58775428 | Msa0173480:CDS |
| GCACGTATGTAACTACTTAA+TGG | 0.280619 | 1_4:-58773840 | Msa0173480:three_prime_UTR |
| AGGAAAGAGTCCACTGTTTC+TGG | 0.287444 | 1_4:-58778488 | Msa0173480:five_prime_UTR |
| ACCATTCTTAGTATATGTTT+TGG | 0.290296 | 1_4:+58776976 | None:intergenic |
| GTGGGTTGCTTTCTGTTTCT+GGG | 0.300164 | 1_4:-58777439 | Msa0173480:CDS |
| TATCACACTGTCTTTGACTA+TGG | 0.305502 | 1_4:-58773965 | Msa0173480:CDS |
| AACCCAAAGGTTCGAACTTC+CGG | 0.323172 | 1_4:+58777146 | None:intergenic |
| CTTCTTCCTTCTTTCTCCTA+TGG | 0.341567 | 1_4:-58777402 | Msa0173480:CDS |
| ATAATCCTTCAAAGGTACTA+TGG | 0.366326 | 1_4:+58777239 | None:intergenic |
| ATACCGGAAGTTCGAACCTT+TGG | 0.366601 | 1_4:-58777149 | Msa0173480:CDS |
| TTCATTGGAGGTCTCTCAAC+AGG | 0.375201 | 1_4:-58775899 | Msa0173480:intron |
| TATGGATCTGGAGCAATATC+TGG | 0.380262 | 1_4:-58776810 | Msa0173480:CDS |
| GGCATCGTCGGATGATTTAC+TGG | 0.385524 | 1_4:+58777260 | None:intergenic |
| TGTGCTGCTATTGTGGATTC+AGG | 0.385643 | 1_4:-58775627 | Msa0173480:CDS |
| ACTGAAATCAACCATGCTAT+TGG | 0.387536 | 1_4:-58775492 | Msa0173480:CDS |
| TTTGTGCTGGCAAAGTTTGA+TGG | 0.391550 | 1_4:-58776603 | Msa0173480:CDS |
| GCACAATATTATGGAGAGAT+TGG | 0.391737 | 1_4:-58777210 | Msa0173480:CDS |
| GCAAAGTTTGATGGATTACT+TGG | 0.395124 | 1_4:-58776594 | Msa0173480:CDS |
| TACCGGAAGTTCGAACCTTT+GGG | 0.402892 | 1_4:-58777148 | Msa0173480:CDS |
| ATTGCAACTGTCTGTCTTAG+TGG | 0.405812 | 1_4:-58774170 | Msa0173480:CDS |
| TTTGATGGATTACTTGGGCT+TGG | 0.408707 | 1_4:-58776588 | Msa0173480:CDS |
| CTCCTCCAAGGGGTCCTCTC+TGG | 0.412726 | 1_4:-58774127 | Msa0173480:intron |
| CGATGCCATAGTACCTTTGA+AGG | 0.413136 | 1_4:-58777244 | Msa0173480:CDS |
| TATTATGGAGAGATTGGAAT+TGG | 0.414971 | 1_4:-58777204 | Msa0173480:CDS |
| AGTTCTGAGTGTAGAATGTA+AGG | 0.415661 | 1_4:-58775460 | Msa0173480:CDS |
| ATATGGGATCTCTTGGTAGC+AGG | 0.416249 | 1_4:-58775411 | Msa0173480:CDS |
| TTTCAAAAGCTAACCTGCTC+TGG | 0.419852 | 1_4:+58774587 | None:intergenic |
| TCAGGAACATCATTGCTTGC+TGG | 0.420845 | 1_4:-58775609 | Msa0173480:CDS |
| TCTACTACCGACTCTCCATT+TGG | 0.426333 | 1_4:+58774677 | None:intergenic |
| AAGGGTGGTGAGCTAATTCT+TGG | 0.431483 | 1_4:-58776101 | Msa0173480:CDS |
| CCGATAGTGAACGAAATGTT+TGG | 0.437728 | 1_4:+58774632 | None:intergenic |
| GATGGTGACTGAAAAGGAAC+AGG | 0.445152 | 1_4:-58774938 | Msa0173480:CDS |
| ACATCATGTAAAATAGCATA+TGG | 0.445708 | 1_4:-58776828 | Msa0173480:CDS |
| AAATAAAGAAACGAGTGTAT+TGG | 0.447128 | 1_4:-58778546 | None:intergenic |
| TGTTCACAAGTTGGTTTATG+TGG | 0.447600 | 1_4:-58775254 | Msa0173480:CDS |
| TCTTTGCCTTGTACCAATGA+TGG | 0.454127 | 1_4:+58777002 | None:intergenic |
| TTGCAACTGTCTGTCTTAGT+GGG | 0.456599 | 1_4:-58774169 | Msa0173480:CDS |
| AGGAAGAAGTGAGCATGTTA+AGG | 0.461966 | 1_4:+58777416 | None:intergenic |
| AGTCAAGATAATGTTAAACT+TGG | 0.466184 | 1_4:-58776780 | Msa0173480:CDS |
| AGGTAGTATTTCCTTTGTGC+TGG | 0.466744 | 1_4:-58776616 | Msa0173480:CDS |
| ATATGTCCCAGTCACTCAAA+AGG | 0.467120 | 1_4:-58776042 | Msa0173480:CDS |
| TCCAAAACATATACTAAGAA+TGG | 0.470813 | 1_4:-58776977 | Msa0173480:intron |
| GTAGTTTATTACTAGTATGT+AGG | 0.472258 | 1_4:-58773897 | Msa0173480:three_prime_UTR |
| CCAAACATTTCGTTCACTAT+CGG | 0.480158 | 1_4:-58774632 | Msa0173480:CDS |
| ACTCTTTCCTGCTCGTACAA+TGG | 0.482508 | 1_4:+58778501 | None:intergenic |
| TGTAAAATAGCATATGGATC+TGG | 0.485019 | 1_4:-58776822 | Msa0173480:CDS |
| AGGTGGCTGTGCTGCTATTG+TGG | 0.487001 | 1_4:-58775634 | Msa0173480:CDS |
| AAAGTCAAGCAGACCTGTGT+TGG | 0.487437 | 1_4:-58777301 | Msa0173480:CDS |
| CAGTCACTCAAAAGGGCTAT+TGG | 0.490769 | 1_4:-58776034 | Msa0173480:CDS |
| GTACCAATGATGGGTGTAGC+AGG | 0.494741 | 1_4:+58777012 | None:intergenic |
| TTGCCTGCTACACCCATCAT+TGG | 0.494879 | 1_4:-58777015 | Msa0173480:CDS |
| AGAGTTGATATGGGATCTCT+TGG | 0.497460 | 1_4:-58775418 | Msa0173480:CDS |
| GACTATGGAAATCTCCAACT+TGG | 0.497542 | 1_4:-58773950 | Msa0173480:CDS |
| TTTAATGTCATATTTGATAC+CGG | 0.504218 | 1_4:-58777165 | Msa0173480:CDS |
| CTTTGCCTTGTACCAATGAT+GGG | 0.506920 | 1_4:+58777003 | None:intergenic |
| CAAAGGAAATACTACCTTCA+CGG | 0.507736 | 1_4:+58776622 | None:intergenic |
| CTATGGCGAACAAGTATTTG+TGG | 0.507847 | 1_4:-58777458 | Msa0173480:CDS |
| TATGGCGAACAAGTATTTGT+GGG | 0.510711 | 1_4:-58777457 | Msa0173480:CDS |
| TTTCGTCCTCAGTCCAGAGC+AGG | 0.513352 | 1_4:-58774600 | Msa0173480:intron |
| ATATGACATTAAATGTCTGC+GGG | 0.514798 | 1_4:+58777175 | None:intergenic |
| CACTCAAAAGGGCTATTGGC+AGG | 0.514804 | 1_4:-58776030 | Msa0173480:intron |
| AGGGTGGTGAGCTAATTCTT+GGG | 0.521468 | 1_4:-58776100 | Msa0173480:CDS |
| CCAAATCACAAGCATCTGAC+AGG | 0.525516 | 1_4:+58774879 | None:intergenic |
| AGCATACCAAAAGTGAAGGT+GGG | 0.526754 | 1_4:+58778395 | None:intergenic |
| AACCATGCTATTGGAGCTGA+AGG | 0.532160 | 1_4:-58775483 | Msa0173480:CDS |
| ACCGACTCTCCATTTGGACT+TGG | 0.532497 | 1_4:+58774683 | None:intergenic |
| GTTGATCCAAATCACTTCAA+AGG | 0.533108 | 1_4:-58776074 | Msa0173480:CDS |
| AAAGGAAATACTACCTTCAC+GGG | 0.535086 | 1_4:+58776623 | None:intergenic |
| GGTGATGTGTGTTCACAAGT+TGG | 0.536807 | 1_4:-58775263 | Msa0173480:CDS |
| ACAAAATCCATTGTACGAGC+AGG | 0.537967 | 1_4:-58778508 | Msa0173480:five_prime_UTR |
| AAGTCAAGCAGACCTGTGTT+GGG | 0.541826 | 1_4:-58777300 | Msa0173480:CDS |
| CACAAATACTTGTTCGCCAT+AGG | 0.542130 | 1_4:+58777459 | None:intergenic |
| ATAAATCCATAGGAGAAAGA+AGG | 0.545243 | 1_4:+58777396 | None:intergenic |
| TTCATTGAGGCTACCCGTGA+AGG | 0.546701 | 1_4:-58776636 | Msa0173480:CDS |
| CAAAGTTTGATGGATTACTT+GGG | 0.547133 | 1_4:-58776593 | Msa0173480:CDS |
| AACACATAAACAACAAAAGT+AGG | 0.547843 | 1_4:+58778457 | None:intergenic |
| TGAATATGGAGAGTTGATAT+GGG | 0.547882 | 1_4:-58775427 | Msa0173480:CDS |
| ACAAATACTTGTTCGCCATA+GGG | 0.554513 | 1_4:+58777460 | None:intergenic |
| CAGAGAGGACCCCTTGGAGG+AGG | 0.556555 | 1_4:+58774128 | None:intergenic |
| TATGTCCCAGTCACTCAAAA+GGG | 0.557674 | 1_4:-58776041 | Msa0173480:CDS |
| CGATGTTGTTGTCAAGGATG+TGG | 0.559094 | 1_4:-58776757 | Msa0173480:intron |
| TTGGTTTATGTGGTGGCAAG+AGG | 0.559110 | 1_4:-58775244 | Msa0173480:CDS |
| CTACACCCATCATTGGTACA+AGG | 0.560382 | 1_4:-58777008 | Msa0173480:CDS |
| CAGCTTCAGCAAAACCAAGT+TGG | 0.561265 | 1_4:+58773936 | None:intergenic |
| GATTGAGATGGTGACTGAAA+AGG | 0.563634 | 1_4:-58774944 | Msa0173480:CDS |
| GAGAGCTTGCCAAGTCCAAA+TGG | 0.564520 | 1_4:-58774692 | Msa0173480:CDS |
| GCAAGAGGGTACAATCTAAG+AGG | 0.567144 | 1_4:-58775229 | Msa0173480:intron |
| ACATACCAGAGAGGACCCCT+TGG | 0.568366 | 1_4:+58774122 | None:intergenic |
| GCATTCAAATAATCCTTCAA+AGG | 0.571708 | 1_4:+58777231 | None:intergenic |
| ATCAATTCTCATAAATCCAT+AGG | 0.571801 | 1_4:+58777386 | None:intergenic |
| ACTTGTGAACACACATCACC+AGG | 0.573452 | 1_4:+58775266 | None:intergenic |
| GGGTGGTGAGCTAATTCTTG+GGG | 0.575026 | 1_4:-58776099 | Msa0173480:CDS |
| TATGGGATCTCTTGGTAGCA+GGG | 0.575997 | 1_4:-58775410 | Msa0173480:CDS |
| TACCAGAGAGGACCCCTTGG+AGG | 0.578063 | 1_4:+58774125 | None:intergenic |
| CTCCTTCAGCTCCAATAGCA+TGG | 0.581282 | 1_4:+58775481 | None:intergenic |
| TAGCATTAGAGCTGCTAGGA+TGG | 0.582888 | 1_4:-58777337 | Msa0173480:CDS |
| CAAAGGTACTATGGCATCGT+CGG | 0.583586 | 1_4:+58777248 | None:intergenic |
| AATATGACATTAAATGTCTG+CGG | 0.583626 | 1_4:+58777174 | None:intergenic |
| ATGTAACTACTTAATGGTGC+AGG | 0.586719 | 1_4:-58773834 | Msa0173480:three_prime_UTR |
| ATACTTTAATACAACATACA+TGG | 0.587797 | 1_4:+58773718 | None:intergenic |
| GAAACTGTAGGATTTCATTG+AGG | 0.588396 | 1_4:-58776649 | Msa0173480:intron |
| AAGCATACCAAAAGTGAAGG+TGG | 0.592222 | 1_4:+58778394 | None:intergenic |
| TGGTTTATGTGGTGGCAAGA+GGG | 0.598763 | 1_4:-58775243 | Msa0173480:CDS |
| ACTTGGCGATGTTGTTGTCA+AGG | 0.601776 | 1_4:-58776763 | Msa0173480:CDS |
| AAACTACCACAAGTCTCACT+AGG | 0.604215 | 1_4:+58773913 | None:intergenic |
| TGAAAGCATACCAAAAGTGA+AGG | 0.606141 | 1_4:+58778391 | None:intergenic |
| GCCAAGTCCAAATGGAGAGT+CGG | 0.611187 | 1_4:-58774684 | Msa0173480:CDS |
| GCATACCAAAAGTGAAGGTG+GGG | 0.611673 | 1_4:+58778396 | None:intergenic |
| ATGGGATCTCTTGGTAGCAG+GGG | 0.615385 | 1_4:-58775409 | Msa0173480:intron |
| CATAAACAACAAAAGTAGGA+AGG | 0.615535 | 1_4:+58778461 | None:intergenic |
| TTTGACATTCCTCCTCCAAG+GGG | 0.621730 | 1_4:-58774137 | Msa0173480:CDS |
| TTGATAGCATTAGAGCTGCT+AGG | 0.621778 | 1_4:-58777341 | Msa0173480:CDS |
| TCACAAGTTGGTTTATGTGG+TGG | 0.628952 | 1_4:-58775251 | Msa0173480:CDS |
| AACTACATGATACTTTAACA+TGG | 0.631393 | 1_4:+58773575 | None:intergenic |
| CTGCAGCATGGGGATTGAGA+TGG | 0.633556 | 1_4:-58774956 | Msa0173480:intron |
| ATCAAACTTTGCCAGCACAA+AGG | 0.640448 | 1_4:+58776605 | None:intergenic |
| AGCTAACCTGCTCTGGACTG+AGG | 0.651008 | 1_4:+58774594 | None:intergenic |
| TGATCATATGCACCCAACAC+AGG | 0.654844 | 1_4:+58777288 | None:intergenic |
| GGAAGGTCGTCCAGAAACAG+TGG | 0.656322 | 1_4:+58778478 | None:intergenic |
| ATGACATTAAATGTCTGCGG+GGG | 0.693826 | 1_4:+58777177 | None:intergenic |
| ATGGTGACTGAAAAGGAACA+GGG | 0.704689 | 1_4:-58774937 | Msa0173480:CDS |
| TATGACATTAAATGTCTGCG+GGG | 0.719171 | 1_4:+58777176 | None:intergenic |
| ACTCAAACGAAAGTCAACCA+AGG | 0.720996 | 1_4:-58774845 | Msa0173480:CDS |
| GGTGGTGAGCTAATTCTTGG+GGG | 0.731770 | 1_4:-58776098 | Msa0173480:CDS |
| AAGCTGCCTAGTGAGACTTG+TGG | 0.732793 | 1_4:-58773919 | Msa0173480:exon |
| GTAAGAGAAACATACCAGAG+AGG | 0.774024 | 1_4:+58774113 | None:intergenic |
| ACTTTGACGATGGAACCCAA+AGG | 0.779989 | 1_4:+58777133 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGATTGAAGATTAAAAT+TGG | + | chr1_4:58773761-58773780 | None:intergenic | 15.0% |
| !! | GAATCTATATGATAATTATA+CGG | - | chr1_4:58774004-58774023 | Msa0173480:intron | 15.0% |
| !! | AATGTAAAAAATAGACATTA+AGG | - | chr1_4:58774432-58774451 | Msa0173480:intron | 15.0% |
| !!! | TTACTACTTTTATGTAAATT+TGG | - | chr1_4:58774577-58774596 | Msa0173480:intron | 15.0% |
| !!! | TACTACTTTTATGTAAATTT+GGG | - | chr1_4:58774578-58774597 | Msa0173480:intron | 15.0% |
| !! | ATTAATGTATAATTCAAACA+TGG | + | chr1_4:58775686-58775705 | None:intergenic | 15.0% |
| !!! | TGTGTATATTTGTATATTTT+TGG | - | chr1_4:58776391-58776410 | Msa0173480:intron | 15.0% |
| !!! | AACATGTTGATATTATTTTT+AGG | - | chr1_4:58776452-58776471 | Msa0173480:intron | 15.0% |
| !! | AAATTGGTTGAAATTTAAAA+GGG | - | chr1_4:58778497-58778516 | Msa0173480:five_prime_UTR | 15.0% |
| !! | TATCATATAATTTATGCTTC+AGG | - | chr1_4:58773812-58773831 | Msa0173480:three_prime_UTR | 20.0% |
| !! | ACGGTCTTTATATTTATTTA+TGG | - | chr1_4:58774023-58774042 | Msa0173480:intron | 20.0% |
| !! | CGGTCTTTATATTTATTTAT+GGG | - | chr1_4:58774024-58774043 | Msa0173480:intron | 20.0% |
| !! | TTGAAACGAATAATAAAACA+AGG | + | chr1_4:58774488-58774507 | None:intergenic | 20.0% |
| !! | TTTACATAAAAGTAGTAATG+AGG | + | chr1_4:58774575-58774594 | None:intergenic | 20.0% |
| !! | TATTTGAATGCACAATATTA+TGG | - | chr1_4:58774899-58774918 | Msa0173480:CDS | 20.0% |
| !! | TTTAATGTCATATTTGATAC+CGG | - | chr1_4:58774953-58774972 | Msa0173480:CDS | 20.0% |
| !!! | AAACAAAATTTAGTTTGATC+AGG | - | chr1_4:58776117-58776136 | Msa0173480:CDS | 20.0% |
| !! | ATAGTGAATACTGAAAAATA+AGG | - | chr1_4:58776279-58776298 | Msa0173480:intron | 20.0% |
| !! | TAGTGAATACTGAAAAATAA+GGG | - | chr1_4:58776280-58776299 | Msa0173480:intron | 20.0% |
| !! | AGCTATGATTGAATAATATA+TGG | + | chr1_4:58776560-58776579 | None:intergenic | 20.0% |
| !! | AATCAATATTAAGCTCATTT+AGG | + | chr1_4:58776821-58776840 | None:intergenic | 20.0% |
| !!! | TTAATATTGATTTTCAGGTA+CGG | - | chr1_4:58776829-58776848 | Msa0173480:CDS | 20.0% |
| !! | ATCGAAATACAATGAATTAA+AGG | + | chr1_4:58776979-58776998 | None:intergenic | 20.0% |
| !! | TTAATTCATTGTATTTCGAT+TGG | - | chr1_4:58776979-58776998 | Msa0173480:CDS | 20.0% |
| !!! | TGTGAATATTTCAGATTTTT+AGG | - | chr1_4:58777659-58777678 | Msa0173480:intron | 20.0% |
| !! | TTGATCTATAGTATATTTGT+TGG | - | chr1_4:58777874-58777893 | Msa0173480:intron | 20.0% |
| !!! | TTTCAGTATATTTTGAAAAC+TGG | - | chr1_4:58777918-58777937 | Msa0173480:intron | 20.0% |
| !! | ATACTTTAATACAACATACA+TGG | + | chr1_4:58778403-58778422 | None:intergenic | 20.0% |
| !! | GAAATTGGTTGAAATTTAAA+AGG | - | chr1_4:58778496-58778515 | Msa0173480:five_prime_UTR | 20.0% |
| !! | AATTGGTTGAAATTTAAAAG+GGG | - | chr1_4:58778498-58778517 | Msa0173480:five_prime_UTR | 20.0% |
| !!! | TACAATGGATTTTGTATACT+TGG | + | chr1_4:58773605-58773624 | None:intergenic | 25.0% |
| ! | AACACATAAACAACAAAAGT+AGG | + | chr1_4:58773664-58773683 | None:intergenic | 25.0% |
| !!! | CTCAAAAGCATTTAGTATAT+GGG | + | chr1_4:58774306-58774325 | None:intergenic | 25.0% |
| !!! | ACTCAAAAGCATTTAGTATA+TGG | + | chr1_4:58774307-58774326 | None:intergenic | 25.0% |
| ! | CGAATAATAAAACAAGGAAA+TGG | + | chr1_4:58774482-58774501 | None:intergenic | 25.0% |
| ! | TTTATGTAAATTTGGGAGTT+TGG | - | chr1_4:58774585-58774604 | Msa0173480:intron | 25.0% |
| ! | ATCAATTCTCATAAATCCAT+AGG | + | chr1_4:58774735-58774754 | None:intergenic | 25.0% |
| ! | AATATGACATTAAATGTCTG+CGG | + | chr1_4:58774947-58774966 | None:intergenic | 25.0% |
| ! | TCCAAAACATATACTAAGAA+TGG | - | chr1_4:58775141-58775160 | Msa0173480:intron | 25.0% |
| !! | ACCATTCTTAGTATATGTTT+TGG | + | chr1_4:58775145-58775164 | None:intergenic | 25.0% |
| ! | TTACTCATATTCATTTGTAG+TGG | - | chr1_4:58775180-58775199 | Msa0173480:intron | 25.0% |
| ! | ACATCATGTAAAATAGCATA+TGG | - | chr1_4:58775290-58775309 | Msa0173480:intron | 25.0% |
| ! | AGTCAAGATAATGTTAAACT+TGG | - | chr1_4:58775338-58775357 | Msa0173480:intron | 25.0% |
| !! | AGTTTTTATACAGCAAATCT+TGG | - | chr1_4:58775429-58775448 | Msa0173480:CDS | 25.0% |
| ! | TTGCATGTCAGAATTAAATA+TGG | - | chr1_4:58775633-58775652 | Msa0173480:CDS | 25.0% |
| ! | TCTGTTATGTCCATTAATTT+AGG | - | chr1_4:58775660-58775679 | Msa0173480:intron | 25.0% |
| !! | CTTCATTTTATCTCTTGTTA+TGG | + | chr1_4:58775752-58775771 | None:intergenic | 25.0% |
| ! | TTCAAATGTGTAGTTTAATG+CGG | - | chr1_4:58776147-58776166 | Msa0173480:intron | 25.0% |
| !! | TATACCTTTTCAGATTGAAA+TGG | - | chr1_4:58776188-58776207 | Msa0173480:intron | 25.0% |
| !! | ATACCTTTTCAGATTGAAAT+GGG | - | chr1_4:58776189-58776208 | Msa0173480:intron | 25.0% |
| ! | ACTATCTTATTGTTGAAGAA+CGG | + | chr1_4:58776253-58776272 | None:intergenic | 25.0% |
| ! | AAAATAAGGGAGTAATTTAG+TGG | - | chr1_4:58776293-58776312 | Msa0173480:intron | 25.0% |
| !!! | AAAGGTTTTAAGATATGGTA+TGG | - | chr1_4:58776319-58776338 | Msa0173480:intron | 25.0% |
| !!! | CATTTATACTTTTTGTTGAC+CGG | - | chr1_4:58776583-58776602 | Msa0173480:CDS | 25.0% |
| ! | AAGGAAATTGTTACTGAATA+TGG | - | chr1_4:58776677-58776696 | Msa0173480:intron | 25.0% |
| !!! | TGAGCTTAATATTGATTTTC+AGG | - | chr1_4:58776824-58776843 | Msa0173480:CDS | 25.0% |
| !!! | TTAGTTTCTTTTTTTGTCAC+TGG | - | chr1_4:58777060-58777079 | Msa0173480:intron | 25.0% |
| !!! | TAGTTTCTTTTTTTGTCACT+GGG | - | chr1_4:58777061-58777080 | Msa0173480:intron | 25.0% |
| !! | GTAGTTGAATATTTTATCCT+TGG | + | chr1_4:58777293-58777312 | None:intergenic | 25.0% |
| ! | ATAATTCGAAACATTAACTC+AGG | + | chr1_4:58777355-58777374 | None:intergenic | 25.0% |
| ! | AAAATACCTTTCCAAAAGAT+GGG | - | chr1_4:58777763-58777782 | Msa0173480:intron | 25.0% |
| !!! | TATATTTTGAAAACTGGAGA+AGG | - | chr1_4:58777924-58777943 | Msa0173480:intron | 25.0% |
| !!! | AGCAAGATTTATTTTAAGCA+AGG | + | chr1_4:58778076-58778095 | None:intergenic | 25.0% |
| ! | GTAGTTTATTACTAGTATGT+AGG | - | chr1_4:58778221-58778240 | Msa0173480:intron | 25.0% |
| ! | ATATCATGTATCCATGTTTA+AGG | - | chr1_4:58778446-58778465 | Msa0173480:five_prime_UTR | 25.0% |
| CATAAACAACAAAAGTAGGA+AGG | + | chr1_4:58773660-58773679 | None:intergenic | 30.0% | |
| CTGAAAAGAAAAGGAATCAA+AGG | + | chr1_4:58773943-58773962 | None:intergenic | 30.0% | |
| GCTTCAAAACTGAAAAGAAA+AGG | + | chr1_4:58773952-58773971 | None:intergenic | 30.0% | |
| !! | GTTAGTGATTAGTCTTACAT+CGG | - | chr1_4:58774263-58774282 | Msa0173480:intron | 30.0% |
| ATAAATCCATAGGAGAAAGA+AGG | + | chr1_4:58774725-58774744 | None:intergenic | 30.0% | |
| !! | ATAATCCTTCAAAGGTACTA+TGG | + | chr1_4:58774882-58774901 | None:intergenic | 30.0% |
| GCATTCAAATAATCCTTCAA+AGG | + | chr1_4:58774890-58774909 | None:intergenic | 30.0% | |
| TATTATGGAGAGATTGGAAT+TGG | - | chr1_4:58774914-58774933 | Msa0173480:CDS | 30.0% | |
| ATATGACATTAAATGTCTGC+GGG | + | chr1_4:58774946-58774965 | None:intergenic | 30.0% | |
| GAATATGAGTAATGAGAAGA+TGG | + | chr1_4:58775172-58775191 | None:intergenic | 30.0% | |
| GGACATTAGAACGTATTAAA+TGG | + | chr1_4:58775248-58775267 | None:intergenic | 30.0% | |
| CCTGAATTGACAAGTAAAAA+AGG | + | chr1_4:58775269-58775288 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTACTTGTCAATTC+AGG | - | chr1_4:58775266-58775285 | Msa0173480:CDS | 30.0% |
| TGTAAAATAGCATATGGATC+TGG | - | chr1_4:58775296-58775315 | Msa0173480:intron | 30.0% | |
| ! | TTTTATACAGCAAATCTTGG+AGG | - | chr1_4:58775432-58775451 | Msa0173480:CDS | 30.0% |
| TATATTGTCCTTGAAACTGT+AGG | - | chr1_4:58775457-58775476 | Msa0173480:CDS | 30.0% | |
| AATGAAATCCTACAGTTTCA+AGG | + | chr1_4:58775468-58775487 | None:intergenic | 30.0% | |
| !! | CAAAGTTTGATGGATTACTT+GGG | - | chr1_4:58775525-58775544 | Msa0173480:intron | 30.0% |
| TCAGATGCAAATGAAATAAC+AGG | + | chr1_4:58775613-58775632 | None:intergenic | 30.0% | |
| TCAAACATGGCCTAAATTAA+TGG | + | chr1_4:58775673-58775692 | None:intergenic | 30.0% | |
| CCTATACATAAGCACTTATT+TGG | + | chr1_4:58775723-58775742 | None:intergenic | 30.0% | |
| CCAAATAAGTGCTTATGTAT+AGG | - | chr1_4:58775720-58775739 | Msa0173480:intron | 30.0% | |
| TGTATATCCTAGAGAACTTA+TGG | - | chr1_4:58775784-58775803 | Msa0173480:intron | 30.0% | |
| CTTATTTCCATAAGTTCTCT+AGG | + | chr1_4:58775794-58775813 | None:intergenic | 30.0% | |
| !! | GATGTATAATGGATCACTAA+AGG | + | chr1_4:58775917-58775936 | None:intergenic | 30.0% |
| TTTGTACCTGTGATGTATAA+TGG | + | chr1_4:58775928-58775947 | None:intergenic | 30.0% | |
| TATACATCACAGGTACAAAA+TGG | - | chr1_4:58775929-58775948 | Msa0173480:intron | 30.0% | |
| !!! | TGTTTTCCTTTGAAGTGATT+TGG | + | chr1_4:58776053-58776072 | None:intergenic | 30.0% |
| !!! | GGTTGAAAGGTTTTAAGATA+TGG | - | chr1_4:58776314-58776333 | Msa0173480:intron | 30.0% |
| ATACACATTGTACATATGAG+AGG | + | chr1_4:58776378-58776397 | None:intergenic | 30.0% | |
| TTACAAAGTGCATCTAATTG+TGG | - | chr1_4:58776429-58776448 | Msa0173480:intron | 30.0% | |
| AAGATGTAAGTACATACAGT+TGG | + | chr1_4:58776536-58776555 | None:intergenic | 30.0% | |
| !! | TGAATATGGAGAGTTGATAT+GGG | - | chr1_4:58776691-58776710 | Msa0173480:intron | 30.0% |
| ! | TTAAGCTCATTTAGGTTCAA+AGG | + | chr1_4:58776813-58776832 | None:intergenic | 30.0% |
| TGGTAATAATTTGAAGATGC+TGG | - | chr1_4:58776999-58777018 | Msa0173480:CDS | 30.0% | |
| CAGTGATTTATACTCTTCAT+TGG | - | chr1_4:58777028-58777047 | Msa0173480:intron | 30.0% | |
| ! | ATTGCAATGCTACAAGATTT+TGG | - | chr1_4:58777107-58777126 | Msa0173480:intron | 30.0% |
| GAATTATCCTATTGCTTTGA+TGG | - | chr1_4:58777368-58777387 | Msa0173480:CDS | 30.0% | |
| AATCAATCCATCAAAGCAAT+AGG | + | chr1_4:58777378-58777397 | None:intergenic | 30.0% | |
| !!! | TTGCTTTGATGGATTGATTT+TGG | - | chr1_4:58777379-58777398 | Msa0173480:CDS | 30.0% |
| !!! | CATCTTTTGGAAAGGTATTT+TGG | + | chr1_4:58777764-58777783 | None:intergenic | 30.0% |
| CAAAATACCTTTCCAAAAGA+TGG | - | chr1_4:58777762-58777781 | Msa0173480:intron | 30.0% | |
| TTACTCATATCTACATCCAA+AGG | - | chr1_4:58777831-58777850 | Msa0173480:intron | 30.0% | |
| ! | TTGTCCTTTTTCTTTTCTGA+AGG | - | chr1_4:58778103-58778122 | Msa0173480:intron | 30.0% |
| GAATCCTTCAGAAAAGAAAA+AGG | + | chr1_4:58778110-58778129 | None:intergenic | 30.0% | |
| !! | TTTCTTTTCTGAAGGATTCT+TGG | - | chr1_4:58778111-58778130 | Msa0173480:intron | 30.0% |
| ATGTACATGATCCTTAAACA+TGG | + | chr1_4:58778460-58778479 | None:intergenic | 30.0% | |
| TAACATGGATACATAATGCT+TGG | + | chr1_4:58778531-58778550 | None:intergenic | 30.0% | |
| ! | TGAAAGCATACCAAAAGTGA+AGG | + | chr1_4:58773730-58773749 | None:intergenic | 35.0% |
| AGAAGCAACGTGAAAATATG+TGG | + | chr1_4:58773911-58773930 | None:intergenic | 35.0% | |
| ! | ATTTTTGAATATTCCCCACG+TGG | - | chr1_4:58773974-58773993 | Msa0173480:CDS | 35.0% |
| TTAAAGTCAGCAACAATCGA+AGG | + | chr1_4:58774179-58774198 | None:intergenic | 35.0% | |
| !! | AATGCTTTTGAGTGAAGATG+TGG | - | chr1_4:58774314-58774333 | Msa0173480:intron | 35.0% |
| TTTACAAACGTCAACGAAGT+TGG | - | chr1_4:58774543-58774562 | Msa0173480:intron | 35.0% | |
| AAGAAGAAAGTAAGTGAAGG+TGG | + | chr1_4:58774619-58774638 | None:intergenic | 35.0% | |
| GGTAAGAAGAAAGTAAGTGA+AGG | + | chr1_4:58774622-58774641 | None:intergenic | 35.0% | |
| ACAAATACTTGTTCGCCATA+GGG | + | chr1_4:58774661-58774680 | None:intergenic | 35.0% | |
| TATGGCGAACAAGTATTTGT+GGG | - | chr1_4:58774661-58774680 | Msa0173480:CDS | 35.0% | |
| GCACAATATTATGGAGAGAT+TGG | - | chr1_4:58774908-58774927 | Msa0173480:CDS | 35.0% | |
| TATGACATTAAATGTCTGCG+GGG | + | chr1_4:58774945-58774964 | None:intergenic | 35.0% | |
| GAAAAATAGCACTTTGACGA+TGG | + | chr1_4:58774998-58775017 | None:intergenic | 35.0% | |
| TACACTTTGCGTGATTTCAT+CGG | + | chr1_4:58775206-58775225 | None:intergenic | 35.0% | |
| GAAACTGTAGGATTTCATTG+AGG | - | chr1_4:58775469-58775488 | Msa0173480:CDS | 35.0% | |
| AAAGGAAATACTACCTTCAC+GGG | + | chr1_4:58775498-58775517 | None:intergenic | 35.0% | |
| CAAAGGAAATACTACCTTCA+CGG | + | chr1_4:58775499-58775518 | None:intergenic | 35.0% | |
| !! | GCAAAGTTTGATGGATTACT+TGG | - | chr1_4:58775524-58775543 | Msa0173480:intron | 35.0% |
| CACTAAAGGTCTGTTTGAAT+TGG | + | chr1_4:58775903-58775922 | None:intergenic | 35.0% | |
| AGTGATCCATTATACATCAC+AGG | - | chr1_4:58775919-58775938 | Msa0173480:CDS | 35.0% | |
| !!! | TGTTCTCTTTTTGGCTCAAT+GGG | - | chr1_4:58775979-58775998 | Msa0173480:intron | 35.0% |
| GTTGATCCAAATCACTTCAA+AGG | - | chr1_4:58776044-58776063 | Msa0173480:CDS | 35.0% | |
| GGAGTAATTTAGTGGTTGAA+AGG | - | chr1_4:58776301-58776320 | Msa0173480:intron | 35.0% | |
| !!! | TTATTTTTAGGCGTTTGCGA+AGG | - | chr1_4:58776464-58776483 | Msa0173480:intron | 35.0% |
| ! | ACAACAGTCTGAAATTCAAC+CGG | + | chr1_4:58776605-58776624 | None:intergenic | 35.0% |
| ACTGAAATCAACCATGCTAT+TGG | - | chr1_4:58776626-58776645 | Msa0173480:CDS | 35.0% | |
| !! | AGTTCTGAGTGTAGAATGTA+AGG | - | chr1_4:58776658-58776677 | Msa0173480:intron | 35.0% |
| !! | CTGAATATGGAGAGTTGATA+TGG | - | chr1_4:58776690-58776709 | Msa0173480:intron | 35.0% |
| !! | TGTTCACAAGTTGGTTTATG+TGG | - | chr1_4:58776864-58776883 | Msa0173480:intron | 35.0% |
| !! | ACTTTCGTTTGAGTTGATTC+TGG | + | chr1_4:58777267-58777286 | None:intergenic | 35.0% |
| CCAAACATTTCGTTCACTAT+CGG | - | chr1_4:58777486-58777505 | Msa0173480:intron | 35.0% | |
| !! | ATCAAGAGTAAGTTAGCCTT+TGG | + | chr1_4:58777850-58777869 | None:intergenic | 35.0% |
| !! | TTCTTGGCGATGTTTTTATG+AGG | - | chr1_4:58778127-58778146 | Msa0173480:intron | 35.0% |
| !! | TCTTGGCGATGTTTTTATGA+GGG | - | chr1_4:58778128-58778147 | Msa0173480:intron | 35.0% |
| TATCACACTGTCTTTGACTA+TGG | - | chr1_4:58778153-58778172 | Msa0173480:intron | 35.0% | |
| GCACGTATGTAACTACTTAA+TGG | - | chr1_4:58778278-58778297 | Msa0173480:intron | 35.0% | |
| ATGTAACTACTTAATGGTGC+AGG | - | chr1_4:58778284-58778303 | Msa0173480:intron | 35.0% | |
| CTCTTTCAACACACTGAAAT+TGG | - | chr1_4:58778481-58778500 | Msa0173480:five_prime_UTR | 35.0% | |
| ACAAAATCCATTGTACGAGC+AGG | - | chr1_4:58773610-58773629 | Msa0173480:intron | 40.0% | |
| AGCATACCAAAAGTGAAGGT+GGG | + | chr1_4:58773726-58773745 | None:intergenic | 40.0% | |
| AAGCATACCAAAAGTGAAGG+TGG | + | chr1_4:58773727-58773746 | None:intergenic | 40.0% | |
| !! | TTCTGGTTTGTTGATGGTCT+TGG | - | chr1_4:58774339-58774358 | Msa0173480:intron | 40.0% |
| CACAAATACTTGTTCGCCAT+AGG | + | chr1_4:58774662-58774681 | None:intergenic | 40.0% | |
| CTATGGCGAACAAGTATTTG+TGG | - | chr1_4:58774660-58774679 | Msa0173480:CDS | 40.0% | |
| AGGAAGAAGTGAGCATGTTA+AGG | + | chr1_4:58774705-58774724 | None:intergenic | 40.0% | |
| CTTCTTCCTTCTTTCTCCTA+TGG | - | chr1_4:58774716-58774735 | Msa0173480:intron | 40.0% | |
| ! | TTGATAGCATTAGAGCTGCT+AGG | - | chr1_4:58774777-58774796 | Msa0173480:intron | 40.0% |
| ATGACATTAAATGTCTGCGG+GGG | + | chr1_4:58774944-58774963 | None:intergenic | 40.0% | |
| CTTTGCCTTGTACCAATGAT+GGG | + | chr1_4:58775118-58775137 | None:intergenic | 40.0% | |
| TCTTTGCCTTGTACCAATGA+TGG | + | chr1_4:58775119-58775138 | None:intergenic | 40.0% | |
| ! | TATGGATCTGGAGCAATATC+TGG | - | chr1_4:58775308-58775327 | Msa0173480:intron | 40.0% |
| AGGTAGTATTTCCTTTGTGC+TGG | - | chr1_4:58775502-58775521 | Msa0173480:CDS | 40.0% | |
| ATCAAACTTTGCCAGCACAA+AGG | + | chr1_4:58775516-58775535 | None:intergenic | 40.0% | |
| ! | TTTGTGCTGGCAAAGTTTGA+TGG | - | chr1_4:58775515-58775534 | Msa0173480:intron | 40.0% |
| !! | TTTGATGGATTACTTGGGCT+TGG | - | chr1_4:58775530-58775549 | Msa0173480:intron | 40.0% |
| TTGAAAATGCTGTGCCAGTA+TGG | - | chr1_4:58775570-58775589 | Msa0173480:intron | 40.0% | |
| CGTCGAAAAACATACCATAC+TGG | + | chr1_4:58775587-58775606 | None:intergenic | 40.0% | |
| ACATCACAGGTACAAAATGG+TGG | - | chr1_4:58775932-58775951 | Msa0173480:intron | 40.0% | |
| GCAAGATCTTGTAAATGAGC+AGG | - | chr1_4:58775956-58775975 | Msa0173480:intron | 40.0% | |
| ! | ATGAGCAGGTGTTCTCTTTT+TGG | - | chr1_4:58775970-58775989 | Msa0173480:intron | 40.0% |
| !!! | GTGTTCTCTTTTTGGCTCAA+TGG | - | chr1_4:58775978-58775997 | Msa0173480:intron | 40.0% |
| !!! | GTTCTCTTTTTGGCTCAATG+GGG | - | chr1_4:58775980-58775999 | Msa0173480:intron | 40.0% |
| ATATGTCCCAGTCACTCAAA+AGG | - | chr1_4:58776076-58776095 | Msa0173480:CDS | 40.0% | |
| TATGTCCCAGTCACTCAAAA+GGG | - | chr1_4:58776077-58776096 | Msa0173480:CDS | 40.0% | |
| !! | AATAGCCCTTTTGAGTGACT+GGG | + | chr1_4:58776085-58776104 | None:intergenic | 40.0% |
| TCGCCCATTTCAATCTGAAA+AGG | + | chr1_4:58776195-58776214 | None:intergenic | 40.0% | |
| !!! | GAAATGGGCGACTTTTTCAT+TGG | - | chr1_4:58776204-58776223 | Msa0173480:intron | 40.0% |
| CACATTGTACATATGAGAGG+AGG | + | chr1_4:58776375-58776394 | None:intergenic | 40.0% | |
| !! | AGAGTTGATATGGGATCTCT+TGG | - | chr1_4:58776700-58776719 | Msa0173480:intron | 40.0% |
| TAACAAGAAACACTGAAGGG+TGG | + | chr1_4:58776748-58776767 | None:intergenic | 40.0% | |
| GGGTAACAAGAAACACTGAA+GGG | + | chr1_4:58776751-58776770 | None:intergenic | 40.0% | |
| AGGGTAACAAGAAACACTGA+AGG | + | chr1_4:58776752-58776771 | None:intergenic | 40.0% | |
| !! | TCACAAGTTGGTTTATGTGG+TGG | - | chr1_4:58776867-58776886 | Msa0173480:intron | 40.0% |
| TTTGTCACTGGGAAGAGTTT+AGG | - | chr1_4:58777072-58777091 | Msa0173480:intron | 40.0% | |
| TAGCATTGCAATGCTGGAAT+AGG | + | chr1_4:58777099-58777118 | None:intergenic | 40.0% | |
| ATCTTGTAGCATTGCAATGC+TGG | + | chr1_4:58777105-58777124 | None:intergenic | 40.0% | |
| GATTGAGATGGTGACTGAAA+AGG | - | chr1_4:58777174-58777193 | Msa0173480:CDS | 40.0% | |
| ATGGTGACTGAAAAGGAACA+GGG | - | chr1_4:58777181-58777200 | Msa0173480:CDS | 40.0% | |
| ACTCAAACGAAAGTCAACCA+AGG | - | chr1_4:58777273-58777292 | Msa0173480:CDS | 40.0% | |
| !! | GTAAGCCTTTTGAAAGATCC+TGG | - | chr1_4:58777322-58777341 | Msa0173480:CDS | 40.0% |
| TCTGACCAGGATCTTTCAAA+AGG | + | chr1_4:58777330-58777349 | None:intergenic | 40.0% | |
| ATTAACTCAGGTTTCTGACC+AGG | + | chr1_4:58777343-58777362 | None:intergenic | 40.0% | |
| CCGATAGTGAACGAAATGTT+TGG | + | chr1_4:58777489-58777508 | None:intergenic | 40.0% | |
| TTTCAAAAGCTAACCTGCTC+TGG | + | chr1_4:58777534-58777553 | None:intergenic | 40.0% | |
| ! | CAATTATGCTGCCCATCTTT+TGG | + | chr1_4:58777777-58777796 | None:intergenic | 40.0% |
| ATTGCAACTGTCTGTCTTAG+TGG | - | chr1_4:58777948-58777967 | Msa0173480:intron | 40.0% | |
| TTGCAACTGTCTGTCTTAGT+GGG | - | chr1_4:58777949-58777968 | Msa0173480:intron | 40.0% | |
| ! | TTTTGACATTCCTCCTCCAA+GGG | - | chr1_4:58777980-58777999 | Msa0173480:intron | 40.0% |
| GTAAGAGAAACATACCAGAG+AGG | + | chr1_4:58778008-58778027 | None:intergenic | 40.0% | |
| GACTATGGAAATCTCCAACT+TGG | - | chr1_4:58778168-58778187 | Msa0173480:intron | 40.0% | |
| AAACTACCACAAGTCTCACT+AGG | + | chr1_4:58778208-58778227 | None:intergenic | 40.0% | |
| GGATACATAATGCTTGGACT+GGG | + | chr1_4:58778525-58778544 | None:intergenic | 40.0% | |
| TGGATACATAATGCTTGGAC+TGG | + | chr1_4:58778526-58778545 | None:intergenic | 40.0% | |
| ACTCTTTCCTGCTCGTACAA+TGG | + | chr1_4:58773620-58773639 | None:intergenic | 45.0% | |
| AGGAAAGAGTCCACTGTTTC+TGG | - | chr1_4:58773630-58773649 | Msa0173480:intron | 45.0% | |
| ! | TTCTACCCCACCTTCACTTT+TGG | - | chr1_4:58773717-58773736 | Msa0173480:three_prime_UTR | 45.0% |
| GCATACCAAAAGTGAAGGTG+GGG | + | chr1_4:58773725-58773744 | None:intergenic | 45.0% | |
| TAGATTCACGCTATCCACGT+GGG | + | chr1_4:58773991-58774010 | None:intergenic | 45.0% | |
| ATAGATTCACGCTATCCACG+TGG | + | chr1_4:58773992-58774011 | None:intergenic | 45.0% | |
| AGTCAGCAACAATCGAAGGT+AGG | + | chr1_4:58774175-58774194 | None:intergenic | 45.0% | |
| CGATATCCTAACCGATCAGT+AGG | - | chr1_4:58774216-58774235 | Msa0173480:intron | 45.0% | |
| TGAGTGAAGATGTGGTGTTC+TGG | - | chr1_4:58774322-58774341 | Msa0173480:intron | 45.0% | |
| !! | GTGGTGTTCTGGTTTGTTGA+TGG | - | chr1_4:58774333-58774352 | Msa0173480:intron | 45.0% |
| AAACGTCAACGAAGTTGGAC+AGG | - | chr1_4:58774548-58774567 | Msa0173480:intron | 45.0% | |
| TACTTTCTTCTTACCCTGCC+TGG | - | chr1_4:58774627-58774646 | Msa0173480:CDS | 45.0% | |
| ! | TGTGGGTTGCTTTCTGTTTC+TGG | - | chr1_4:58774678-58774697 | Msa0173480:CDS | 45.0% |
| ! | GTGGGTTGCTTTCTGTTTCT+GGG | - | chr1_4:58774679-58774698 | Msa0173480:CDS | 45.0% |
| TAGCATTAGAGCTGCTAGGA+TGG | - | chr1_4:58774781-58774800 | Msa0173480:intron | 45.0% | |
| AAAGTCAAGCAGACCTGTGT+TGG | - | chr1_4:58774817-58774836 | Msa0173480:intron | 45.0% | |
| AAGTCAAGCAGACCTGTGTT+GGG | - | chr1_4:58774818-58774837 | Msa0173480:intron | 45.0% | |
| TGATCATATGCACCCAACAC+AGG | + | chr1_4:58774833-58774852 | None:intergenic | 45.0% | |
| !! | CAAAGGTACTATGGCATCGT+CGG | + | chr1_4:58774873-58774892 | None:intergenic | 45.0% |
| CGATGCCATAGTACCTTTGA+AGG | - | chr1_4:58774874-58774893 | Msa0173480:CDS | 45.0% | |
| ATACCGGAAGTTCGAACCTT+TGG | - | chr1_4:58774969-58774988 | Msa0173480:intron | 45.0% | |
| TACCGGAAGTTCGAACCTTT+GGG | - | chr1_4:58774970-58774989 | Msa0173480:intron | 45.0% | |
| AACCCAAAGGTTCGAACTTC+CGG | + | chr1_4:58774975-58774994 | None:intergenic | 45.0% | |
| ACTTTGACGATGGAACCCAA+AGG | + | chr1_4:58774988-58775007 | None:intergenic | 45.0% | |
| CTACACCCATCATTGGTACA+AGG | - | chr1_4:58775110-58775129 | Msa0173480:intron | 45.0% | |
| ACTTGGCGATGTTGTTGTCA+AGG | - | chr1_4:58775355-58775374 | Msa0173480:intron | 45.0% | |
| CGATGTTGTTGTCAAGGATG+TGG | - | chr1_4:58775361-58775380 | Msa0173480:intron | 45.0% | |
| ! | ATTACTTGGGCTTGGCTTTC+AGG | - | chr1_4:58775538-58775557 | Msa0173480:intron | 45.0% |
| TGGGGATCCAAAAGCGAAAA+AGG | - | chr1_4:58775998-58776017 | Msa0173480:intron | 45.0% | |
| GGGGATCCAAAAGCGAAAAA+GGG | - | chr1_4:58775999-58776018 | Msa0173480:intron | 45.0% | |
| GATCCAAAAGCGAAAAAGGG+TGG | - | chr1_4:58776002-58776021 | Msa0173480:intron | 45.0% | |
| !! | TCACCACCCTTTTTCGCTTT+TGG | + | chr1_4:58776008-58776027 | None:intergenic | 45.0% |
| AAGGGTGGTGAGCTAATTCT+TGG | - | chr1_4:58776017-58776036 | Msa0173480:intron | 45.0% | |
| AGGGTGGTGAGCTAATTCTT+GGG | - | chr1_4:58776018-58776037 | Msa0173480:intron | 45.0% | |
| !! | CAATAGCCCTTTTGAGTGAC+TGG | + | chr1_4:58776086-58776105 | None:intergenic | 45.0% |
| CAGTCACTCAAAAGGGCTAT+TGG | - | chr1_4:58776084-58776103 | Msa0173480:CDS | 45.0% | |
| !!! | ATGGGCGACTTTTTCATTGG+AGG | - | chr1_4:58776207-58776226 | Msa0173480:intron | 45.0% |
| TTCATTGGAGGTCTCTCAAC+AGG | - | chr1_4:58776219-58776238 | Msa0173480:intron | 45.0% | |
| !! | TTTTTAGGCGTTTGCGAAGG+TGG | - | chr1_4:58776467-58776486 | Msa0173480:intron | 45.0% |
| ! | TGTGCTGCTATTGTGGATTC+AGG | - | chr1_4:58776491-58776510 | Msa0173480:intron | 45.0% |
| TCAGGAACATCATTGCTTGC+TGG | - | chr1_4:58776509-58776528 | Msa0173480:intron | 45.0% | |
| AACCATGCTATTGGAGCTGA+AGG | - | chr1_4:58776635-58776654 | Msa0173480:CDS | 45.0% | |
| ! | ATATGGGATCTCTTGGTAGC+AGG | - | chr1_4:58776707-58776726 | Msa0173480:intron | 45.0% |
| ! | TATGGGATCTCTTGGTAGCA+GGG | - | chr1_4:58776708-58776727 | Msa0173480:intron | 45.0% |
| AGAGCAACGACTACAAGTCA+GGG | + | chr1_4:58776771-58776790 | None:intergenic | 45.0% | |
| AAGAGCAACGACTACAAGTC+AGG | + | chr1_4:58776772-58776791 | None:intergenic | 45.0% | |
| !!! | ATTGATTTTCAGGTACGGCC+TGG | - | chr1_4:58776834-58776853 | Msa0173480:intron | 45.0% |
| ACTTGTGAACACACATCACC+AGG | + | chr1_4:58776855-58776874 | None:intergenic | 45.0% | |
| GGTGATGTGTGTTCACAAGT+TGG | - | chr1_4:58776855-58776874 | Msa0173480:intron | 45.0% | |
| TTGGTTTATGTGGTGGCAAG+AGG | - | chr1_4:58776874-58776893 | Msa0173480:intron | 45.0% | |
| TGGTTTATGTGGTGGCAAGA+GGG | - | chr1_4:58776875-58776894 | Msa0173480:intron | 45.0% | |
| ! | GCAAGAGGGTACAATCTAAG+AGG | - | chr1_4:58776889-58776908 | Msa0173480:intron | 45.0% |
| TCTTTGAATCCTCTGCAGCA+TGG | - | chr1_4:58777150-58777169 | Msa0173480:CDS | 45.0% | |
| CTTTGAATCCTCTGCAGCAT+GGG | - | chr1_4:58777151-58777170 | Msa0173480:CDS | 45.0% | |
| TTTGAATCCTCTGCAGCATG+GGG | - | chr1_4:58777152-58777171 | Msa0173480:CDS | 45.0% | |
| GATGGTGACTGAAAAGGAAC+AGG | - | chr1_4:58777180-58777199 | Msa0173480:CDS | 45.0% | |
| CCAAATCACAAGCATCTGAC+AGG | + | chr1_4:58777242-58777261 | None:intergenic | 45.0% | |
| CCTGTCAGATGCTTGTGATT+TGG | - | chr1_4:58777239-58777258 | Msa0173480:CDS | 45.0% | |
| !! | TCTACTACCGACTCTCCATT+TGG | + | chr1_4:58777444-58777463 | None:intergenic | 45.0% |
| !! | ATGCTGCCCATCTTTTGGAA+AGG | + | chr1_4:58777772-58777791 | None:intergenic | 45.0% |
| ! | CTTTTGACATTCCTCCTCCA+AGG | - | chr1_4:58777979-58777998 | Msa0173480:intron | 45.0% |
| TTTGACATTCCTCCTCCAAG+GGG | - | chr1_4:58777981-58778000 | Msa0173480:intron | 45.0% | |
| CAGCTTCAGCAAAACCAAGT+TGG | + | chr1_4:58778185-58778204 | None:intergenic | 45.0% | |
| !! | AAAAAAATAATAAAGAAAAT+AGG | + | chr1_4:58773850-58773869 | None:intergenic | 5.0% |
| AGATTCACGCTATCCACGTG+GGG | + | chr1_4:58773990-58774009 | None:intergenic | 50.0% | |
| TCCTAACCGATCAGTAGGCA+AGG | - | chr1_4:58774221-58774240 | Msa0173480:intron | 50.0% | |
| TCCTTGCCTACTGATCGGTT+AGG | + | chr1_4:58774225-58774244 | None:intergenic | 50.0% | |
| AACCGATCAGTAGGCAAGGA+AGG | - | chr1_4:58774225-58774244 | Msa0173480:intron | 50.0% | |
| CACCTTCCTTGCCTACTGAT+CGG | + | chr1_4:58774230-58774249 | None:intergenic | 50.0% | |
| ! | TCAGTAGGCAAGGAAGGTGT+TGG | - | chr1_4:58774231-58774250 | Msa0173480:intron | 50.0% |
| TAGGGAAAATCTGCCAGGCA+GGG | + | chr1_4:58774643-58774662 | None:intergenic | 50.0% | |
| ATAGGGAAAATCTGCCAGGC+AGG | + | chr1_4:58774644-58774663 | None:intergenic | 50.0% | |
| ! | TGCCTGGCAGATTTTCCCTA+TGG | - | chr1_4:58774643-58774662 | Msa0173480:CDS | 50.0% |
| GGCATCGTCGGATGATTTAC+TGG | + | chr1_4:58774861-58774880 | None:intergenic | 50.0% | |
| TTGCCTGCTACACCCATCAT+TGG | - | chr1_4:58775103-58775122 | Msa0173480:intron | 50.0% | |
| !! | GTACCAATGATGGGTGTAGC+AGG | + | chr1_4:58775109-58775128 | None:intergenic | 50.0% |
| TTCATTGAGGCTACCCGTGA+AGG | - | chr1_4:58775482-58775501 | Msa0173480:CDS | 50.0% | |
| GGGTGGTGAGCTAATTCTTG+GGG | - | chr1_4:58776019-58776038 | Msa0173480:intron | 50.0% | |
| GGTGGTGAGCTAATTCTTGG+GGG | - | chr1_4:58776020-58776039 | Msa0173480:intron | 50.0% | |
| CACTCAAAAGGGCTATTGGC+AGG | - | chr1_4:58776088-58776107 | Msa0173480:CDS | 50.0% | |
| CTCCTTCAGCTCCAATAGCA+TGG | + | chr1_4:58776640-58776659 | None:intergenic | 50.0% | |
| ! | ATGGGATCTCTTGGTAGCAG+GGG | - | chr1_4:58776709-58776728 | Msa0173480:intron | 50.0% |
| GAGAGCTTGCCAAGTCCAAA+TGG | - | chr1_4:58777426-58777445 | Msa0173480:CDS | 50.0% | |
| GCCAAGTCCAAATGGAGAGT+CGG | - | chr1_4:58777434-58777453 | Msa0173480:CDS | 50.0% | |
| ! | ACCGACTCTCCATTTGGACT+TGG | + | chr1_4:58777438-58777457 | None:intergenic | 50.0% |
| AAGCTGCCTAGTGAGACTTG+TGG | - | chr1_4:58778199-58778218 | Msa0173480:intron | 50.0% | |
| GGAAGGTCGTCCAGAAACAG+TGG | + | chr1_4:58773643-58773662 | None:intergenic | 55.0% | |
| CGCCATAGGGAAAATCTGCC+AGG | + | chr1_4:58774648-58774667 | None:intergenic | 55.0% | |
| ! | AGGTGGCTGTGCTGCTATTG+TGG | - | chr1_4:58776484-58776503 | Msa0173480:intron | 55.0% |
| TCTCAATCCCCATGCTGCAG+AGG | + | chr1_4:58777162-58777181 | None:intergenic | 55.0% | |
| CTGCAGCATGGGGATTGAGA+TGG | - | chr1_4:58777162-58777181 | Msa0173480:CDS | 55.0% | |
| TTTCGTCCTCAGTCCAGAGC+AGG | - | chr1_4:58777518-58777537 | Msa0173480:intron | 55.0% | |
| ! | AGCTAACCTGCTCTGGACTG+AGG | + | chr1_4:58777527-58777546 | None:intergenic | 55.0% |
| ACATACCAGAGAGGACCCCT+TGG | + | chr1_4:58777999-58778018 | None:intergenic | 55.0% | |
| TACCAGAGAGGACCCCTTGG+AGG | + | chr1_4:58777996-58778015 | None:intergenic | 60.0% | |
| CAGAGAGGACCCCTTGGAGG+AGG | + | chr1_4:58777993-58778012 | None:intergenic | 65.0% | |
| CTCCTCCAAGGGGTCCTCTC+TGG | - | chr1_4:58777991-58778010 | Msa0173480:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58773578 | 58778562 | 58773578 | ID=Msa0173480;Name=Msa0173480 |
| chr1_4 | mRNA | 58773578 | 58778562 | 58773578 | ID=Msa0173480-mRNA-1;Parent=Msa0173480;Name=Msa0173480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=170|0.92|0.86|1|0.92|0.86|15|284|488 |
| chr1_4 | exon | 58773578 | 58773608 | 58773578 | ID=Msa0173480-mRNA-1:exon:18295;Parent=Msa0173480-mRNA-1 |
| chr1_4 | exon | 58773678 | 58774015 | 58773678 | ID=Msa0173480-mRNA-1:exon:18294;Parent=Msa0173480-mRNA-1 |
| chr1_4 | exon | 58774128 | 58774216 | 58774128 | ID=Msa0173480-mRNA-1:exon:18293;Parent=Msa0173480-mRNA-1 |
| chr1_4 | exon | 58774601 | 58774720 | 58774601 | ID=Msa0173480-mRNA-1:exon:18292;Parent=Msa0173480-mRNA-1 |
| chr1_4 | exon | 58774819 | 58774972 | 58774819 | ID=Msa0173480-mRNA-1:exon:18291;Parent=Msa0173480-mRNA-1 |
| chr1_4 | exon | 58775230 | 58775294 | 58775230 | ID=Msa0173480-mRNA-1:exon:18290;Parent=Msa0173480-mRNA-1 |
| chr1_4 | exon | 58775410 | 58775523 | 58775410 | ID=Msa0173480-mRNA-1:exon:18289;Parent=Msa0173480-mRNA-1 |
| chr1_4 | exon | 58775602 | 58775666 | 58775602 | ID=Msa0173480-mRNA-1:exon:18288;Parent=Msa0173480-mRNA-1 |
| chr1_4 | exon | 58775900 | 58775939 | 58775900 | ID=Msa0173480-mRNA-1:exon:18287;Parent=Msa0173480-mRNA-1 |
| chr1_4 | exon | 58776031 | 58776162 | 58776031 | ID=Msa0173480-mRNA-1:exon:18286;Parent=Msa0173480-mRNA-1 |
| chr1_4 | exon | 58776572 | 58776661 | 58776572 | ID=Msa0173480-mRNA-1:exon:18285;Parent=Msa0173480-mRNA-1 |
| chr1_4 | exon | 58776758 | 58776852 | 58776758 | ID=Msa0173480-mRNA-1:exon:18284;Parent=Msa0173480-mRNA-1 |
| chr1_4 | exon | 58776978 | 58777038 | 58776978 | ID=Msa0173480-mRNA-1:exon:18283;Parent=Msa0173480-mRNA-1 |
| chr1_4 | exon | 58777122 | 58777487 | 58777122 | ID=Msa0173480-mRNA-1:exon:18282;Parent=Msa0173480-mRNA-1 |
| chr1_4 | exon | 58778402 | 58778562 | 58778402 | ID=Msa0173480-mRNA-1:exon:18281;Parent=Msa0173480-mRNA-1 |
| chr1_4 | five_prime_UTR | 58778402 | 58778562 | 58778402 | ID=Msa0173480-mRNA-1:five_prime_utr;Parent=Msa0173480-mRNA-1 |
| chr1_4 | five_prime_UTR | 58777479 | 58777487 | 58777479 | ID=Msa0173480-mRNA-1:five_prime_utr;Parent=Msa0173480-mRNA-1 |
| chr1_4 | CDS | 58777122 | 58777478 | 58777122 | ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1 |
| chr1_4 | CDS | 58776978 | 58777038 | 58776978 | ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1 |
| chr1_4 | CDS | 58776758 | 58776852 | 58776758 | ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1 |
| chr1_4 | CDS | 58776572 | 58776661 | 58776572 | ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1 |
| chr1_4 | CDS | 58776031 | 58776162 | 58776031 | ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1 |
| chr1_4 | CDS | 58775900 | 58775939 | 58775900 | ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1 |
| chr1_4 | CDS | 58775602 | 58775666 | 58775602 | ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1 |
| chr1_4 | CDS | 58775410 | 58775523 | 58775410 | ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1 |
| chr1_4 | CDS | 58775230 | 58775294 | 58775230 | ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1 |
| chr1_4 | CDS | 58774819 | 58774972 | 58774819 | ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1 |
| chr1_4 | CDS | 58774601 | 58774720 | 58774601 | ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1 |
| chr1_4 | CDS | 58774128 | 58774216 | 58774128 | ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1 |
| chr1_4 | CDS | 58773931 | 58774015 | 58773931 | ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1 |
| chr1_4 | three_prime_UTR | 58773678 | 58773930 | 58773678 | ID=Msa0173480-mRNA-1:three_prime_utr;Parent=Msa0173480-mRNA-1 |
| chr1_4 | three_prime_UTR | 58773578 | 58773608 | 58773578 | ID=Msa0173480-mRNA-1:three_prime_utr;Parent=Msa0173480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
