AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0173480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173480 MtrunA17_Chr1g0193211 94.882 508 6 1 1 488 1 508 0.0 979
Msa0173480 MtrunA17_Chr7g0271351 75.442 509 99 3 1 488 1 504 0.0 801
Msa0173480 MtrunA17_Chr4g0069631 51.176 510 214 5 1 488 1 497 0.0 550
Msa0173480 MtrunA17_Chr4g0075181 54.023 522 203 7 1 488 1 519 0.0 544
Msa0173480 MtrunA17_Chr2g0288851 55.513 517 194 6 1 488 1 510 0.0 540
Msa0173480 MtrunA17_Chr2g0302421 50.394 508 221 6 6 488 1 502 0.0 527
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173480 AT1G11910.1 59.091 484 171 4 26 488 29 506 0.0 580
Msa0173480 AT1G11910.2 59.091 484 171 4 26 488 40 517 0.0 579
Msa0173480 AT1G62290.1 56.818 484 187 3 26 487 29 512 0.0 568
Msa0173480 AT1G62290.2 56.818 484 187 3 26 487 29 512 0.0 568
Msa0173480 AT4G04460.1 52.686 484 202 4 26 488 31 508 0.0 529
Msa0173480 AT1G62290.5 55.459 458 182 3 26 461 29 486 0.0 525
Msa0173480 AT4G04460.2 52.479 484 199 5 26 488 31 504 0.0 522
Msa0173480 AT1G62290.6 54.439 428 173 3 26 431 29 456 8.33e-166 476
Msa0173480 AT1G62290.4 54.439 428 173 3 26 431 29 456 8.33e-166 476
Msa0173480 AT1G62290.3 53.985 389 157 3 26 392 29 417 1.87e-145 423
Msa0173480 AT4G22050.1 37.247 247 131 5 69 293 30 274 3.50e-41 151
Msa0173480 AT4G22050.1 33.571 140 68 7 354 488 234 353 1.18e-11 66.6
Msa0173480 AT1G69100.1 36.220 254 131 10 77 302 39 289 3.15e-37 140
Msa0173480 AT1G69100.2 36.220 254 131 10 77 302 47 297 4.13e-37 140

Find 135 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGGGTTGCTTTCTGTTTC+TGG 0.027211 1_4:-58777440 Msa0173480:CDS
ATTACTTGGGCTTGGCTTTC+AGG 0.101496 1_4:-58776580 Msa0173480:CDS
TATTTGAATGCACAATATTA+TGG 0.213005 1_4:-58777219 Msa0173480:CDS
TGGGGATCCAAAAGCGAAAA+AGG 0.245272 1_4:-58776120 Msa0173480:CDS
TTCTACCCCACCTTCACTTT+TGG 0.252482 1_4:-58778401 Msa0173480:intron
AAGGAAATTGTTACTGAATA+TGG 0.254211 1_4:-58775441 Msa0173480:CDS
ACTTTCGTTTGAGTTGATTC+TGG 0.257963 1_4:+58774854 None:intergenic
CCTGTCAGATGCTTGTGATT+TGG 0.258700 1_4:-58774879 Msa0173480:CDS
CTGAATATGGAGAGTTGATA+TGG 0.273202 1_4:-58775428 Msa0173480:CDS
GCACGTATGTAACTACTTAA+TGG 0.280619 1_4:-58773840 Msa0173480:three_prime_UTR
AGGAAAGAGTCCACTGTTTC+TGG 0.287444 1_4:-58778488 Msa0173480:five_prime_UTR
ACCATTCTTAGTATATGTTT+TGG 0.290296 1_4:+58776976 None:intergenic
GTGGGTTGCTTTCTGTTTCT+GGG 0.300164 1_4:-58777439 Msa0173480:CDS
TATCACACTGTCTTTGACTA+TGG 0.305502 1_4:-58773965 Msa0173480:CDS
AACCCAAAGGTTCGAACTTC+CGG 0.323172 1_4:+58777146 None:intergenic
CTTCTTCCTTCTTTCTCCTA+TGG 0.341567 1_4:-58777402 Msa0173480:CDS
ATAATCCTTCAAAGGTACTA+TGG 0.366326 1_4:+58777239 None:intergenic
ATACCGGAAGTTCGAACCTT+TGG 0.366601 1_4:-58777149 Msa0173480:CDS
TTCATTGGAGGTCTCTCAAC+AGG 0.375201 1_4:-58775899 Msa0173480:intron
TATGGATCTGGAGCAATATC+TGG 0.380262 1_4:-58776810 Msa0173480:CDS
GGCATCGTCGGATGATTTAC+TGG 0.385524 1_4:+58777260 None:intergenic
TGTGCTGCTATTGTGGATTC+AGG 0.385643 1_4:-58775627 Msa0173480:CDS
ACTGAAATCAACCATGCTAT+TGG 0.387536 1_4:-58775492 Msa0173480:CDS
TTTGTGCTGGCAAAGTTTGA+TGG 0.391550 1_4:-58776603 Msa0173480:CDS
GCACAATATTATGGAGAGAT+TGG 0.391737 1_4:-58777210 Msa0173480:CDS
GCAAAGTTTGATGGATTACT+TGG 0.395124 1_4:-58776594 Msa0173480:CDS
TACCGGAAGTTCGAACCTTT+GGG 0.402892 1_4:-58777148 Msa0173480:CDS
ATTGCAACTGTCTGTCTTAG+TGG 0.405812 1_4:-58774170 Msa0173480:CDS
TTTGATGGATTACTTGGGCT+TGG 0.408707 1_4:-58776588 Msa0173480:CDS
CTCCTCCAAGGGGTCCTCTC+TGG 0.412726 1_4:-58774127 Msa0173480:intron
CGATGCCATAGTACCTTTGA+AGG 0.413136 1_4:-58777244 Msa0173480:CDS
TATTATGGAGAGATTGGAAT+TGG 0.414971 1_4:-58777204 Msa0173480:CDS
AGTTCTGAGTGTAGAATGTA+AGG 0.415661 1_4:-58775460 Msa0173480:CDS
ATATGGGATCTCTTGGTAGC+AGG 0.416249 1_4:-58775411 Msa0173480:CDS
TTTCAAAAGCTAACCTGCTC+TGG 0.419852 1_4:+58774587 None:intergenic
TCAGGAACATCATTGCTTGC+TGG 0.420845 1_4:-58775609 Msa0173480:CDS
TCTACTACCGACTCTCCATT+TGG 0.426333 1_4:+58774677 None:intergenic
AAGGGTGGTGAGCTAATTCT+TGG 0.431483 1_4:-58776101 Msa0173480:CDS
CCGATAGTGAACGAAATGTT+TGG 0.437728 1_4:+58774632 None:intergenic
GATGGTGACTGAAAAGGAAC+AGG 0.445152 1_4:-58774938 Msa0173480:CDS
ACATCATGTAAAATAGCATA+TGG 0.445708 1_4:-58776828 Msa0173480:CDS
AAATAAAGAAACGAGTGTAT+TGG 0.447128 1_4:-58778546 None:intergenic
TGTTCACAAGTTGGTTTATG+TGG 0.447600 1_4:-58775254 Msa0173480:CDS
TCTTTGCCTTGTACCAATGA+TGG 0.454127 1_4:+58777002 None:intergenic
TTGCAACTGTCTGTCTTAGT+GGG 0.456599 1_4:-58774169 Msa0173480:CDS
AGGAAGAAGTGAGCATGTTA+AGG 0.461966 1_4:+58777416 None:intergenic
AGTCAAGATAATGTTAAACT+TGG 0.466184 1_4:-58776780 Msa0173480:CDS
AGGTAGTATTTCCTTTGTGC+TGG 0.466744 1_4:-58776616 Msa0173480:CDS
ATATGTCCCAGTCACTCAAA+AGG 0.467120 1_4:-58776042 Msa0173480:CDS
TCCAAAACATATACTAAGAA+TGG 0.470813 1_4:-58776977 Msa0173480:intron
GTAGTTTATTACTAGTATGT+AGG 0.472258 1_4:-58773897 Msa0173480:three_prime_UTR
CCAAACATTTCGTTCACTAT+CGG 0.480158 1_4:-58774632 Msa0173480:CDS
ACTCTTTCCTGCTCGTACAA+TGG 0.482508 1_4:+58778501 None:intergenic
TGTAAAATAGCATATGGATC+TGG 0.485019 1_4:-58776822 Msa0173480:CDS
AGGTGGCTGTGCTGCTATTG+TGG 0.487001 1_4:-58775634 Msa0173480:CDS
AAAGTCAAGCAGACCTGTGT+TGG 0.487437 1_4:-58777301 Msa0173480:CDS
CAGTCACTCAAAAGGGCTAT+TGG 0.490769 1_4:-58776034 Msa0173480:CDS
GTACCAATGATGGGTGTAGC+AGG 0.494741 1_4:+58777012 None:intergenic
TTGCCTGCTACACCCATCAT+TGG 0.494879 1_4:-58777015 Msa0173480:CDS
AGAGTTGATATGGGATCTCT+TGG 0.497460 1_4:-58775418 Msa0173480:CDS
GACTATGGAAATCTCCAACT+TGG 0.497542 1_4:-58773950 Msa0173480:CDS
TTTAATGTCATATTTGATAC+CGG 0.504218 1_4:-58777165 Msa0173480:CDS
CTTTGCCTTGTACCAATGAT+GGG 0.506920 1_4:+58777003 None:intergenic
CAAAGGAAATACTACCTTCA+CGG 0.507736 1_4:+58776622 None:intergenic
CTATGGCGAACAAGTATTTG+TGG 0.507847 1_4:-58777458 Msa0173480:CDS
TATGGCGAACAAGTATTTGT+GGG 0.510711 1_4:-58777457 Msa0173480:CDS
TTTCGTCCTCAGTCCAGAGC+AGG 0.513352 1_4:-58774600 Msa0173480:intron
ATATGACATTAAATGTCTGC+GGG 0.514798 1_4:+58777175 None:intergenic
CACTCAAAAGGGCTATTGGC+AGG 0.514804 1_4:-58776030 Msa0173480:intron
AGGGTGGTGAGCTAATTCTT+GGG 0.521468 1_4:-58776100 Msa0173480:CDS
CCAAATCACAAGCATCTGAC+AGG 0.525516 1_4:+58774879 None:intergenic
AGCATACCAAAAGTGAAGGT+GGG 0.526754 1_4:+58778395 None:intergenic
AACCATGCTATTGGAGCTGA+AGG 0.532160 1_4:-58775483 Msa0173480:CDS
ACCGACTCTCCATTTGGACT+TGG 0.532497 1_4:+58774683 None:intergenic
GTTGATCCAAATCACTTCAA+AGG 0.533108 1_4:-58776074 Msa0173480:CDS
AAAGGAAATACTACCTTCAC+GGG 0.535086 1_4:+58776623 None:intergenic
GGTGATGTGTGTTCACAAGT+TGG 0.536807 1_4:-58775263 Msa0173480:CDS
ACAAAATCCATTGTACGAGC+AGG 0.537967 1_4:-58778508 Msa0173480:five_prime_UTR
AAGTCAAGCAGACCTGTGTT+GGG 0.541826 1_4:-58777300 Msa0173480:CDS
CACAAATACTTGTTCGCCAT+AGG 0.542130 1_4:+58777459 None:intergenic
ATAAATCCATAGGAGAAAGA+AGG 0.545243 1_4:+58777396 None:intergenic
TTCATTGAGGCTACCCGTGA+AGG 0.546701 1_4:-58776636 Msa0173480:CDS
CAAAGTTTGATGGATTACTT+GGG 0.547133 1_4:-58776593 Msa0173480:CDS
AACACATAAACAACAAAAGT+AGG 0.547843 1_4:+58778457 None:intergenic
TGAATATGGAGAGTTGATAT+GGG 0.547882 1_4:-58775427 Msa0173480:CDS
ACAAATACTTGTTCGCCATA+GGG 0.554513 1_4:+58777460 None:intergenic
CAGAGAGGACCCCTTGGAGG+AGG 0.556555 1_4:+58774128 None:intergenic
TATGTCCCAGTCACTCAAAA+GGG 0.557674 1_4:-58776041 Msa0173480:CDS
CGATGTTGTTGTCAAGGATG+TGG 0.559094 1_4:-58776757 Msa0173480:intron
TTGGTTTATGTGGTGGCAAG+AGG 0.559110 1_4:-58775244 Msa0173480:CDS
CTACACCCATCATTGGTACA+AGG 0.560382 1_4:-58777008 Msa0173480:CDS
CAGCTTCAGCAAAACCAAGT+TGG 0.561265 1_4:+58773936 None:intergenic
GATTGAGATGGTGACTGAAA+AGG 0.563634 1_4:-58774944 Msa0173480:CDS
GAGAGCTTGCCAAGTCCAAA+TGG 0.564520 1_4:-58774692 Msa0173480:CDS
GCAAGAGGGTACAATCTAAG+AGG 0.567144 1_4:-58775229 Msa0173480:intron
ACATACCAGAGAGGACCCCT+TGG 0.568366 1_4:+58774122 None:intergenic
GCATTCAAATAATCCTTCAA+AGG 0.571708 1_4:+58777231 None:intergenic
ATCAATTCTCATAAATCCAT+AGG 0.571801 1_4:+58777386 None:intergenic
ACTTGTGAACACACATCACC+AGG 0.573452 1_4:+58775266 None:intergenic
GGGTGGTGAGCTAATTCTTG+GGG 0.575026 1_4:-58776099 Msa0173480:CDS
TATGGGATCTCTTGGTAGCA+GGG 0.575997 1_4:-58775410 Msa0173480:CDS
TACCAGAGAGGACCCCTTGG+AGG 0.578063 1_4:+58774125 None:intergenic
CTCCTTCAGCTCCAATAGCA+TGG 0.581282 1_4:+58775481 None:intergenic
TAGCATTAGAGCTGCTAGGA+TGG 0.582888 1_4:-58777337 Msa0173480:CDS
CAAAGGTACTATGGCATCGT+CGG 0.583586 1_4:+58777248 None:intergenic
AATATGACATTAAATGTCTG+CGG 0.583626 1_4:+58777174 None:intergenic
ATGTAACTACTTAATGGTGC+AGG 0.586719 1_4:-58773834 Msa0173480:three_prime_UTR
ATACTTTAATACAACATACA+TGG 0.587797 1_4:+58773718 None:intergenic
GAAACTGTAGGATTTCATTG+AGG 0.588396 1_4:-58776649 Msa0173480:intron
AAGCATACCAAAAGTGAAGG+TGG 0.592222 1_4:+58778394 None:intergenic
TGGTTTATGTGGTGGCAAGA+GGG 0.598763 1_4:-58775243 Msa0173480:CDS
ACTTGGCGATGTTGTTGTCA+AGG 0.601776 1_4:-58776763 Msa0173480:CDS
AAACTACCACAAGTCTCACT+AGG 0.604215 1_4:+58773913 None:intergenic
TGAAAGCATACCAAAAGTGA+AGG 0.606141 1_4:+58778391 None:intergenic
GCCAAGTCCAAATGGAGAGT+CGG 0.611187 1_4:-58774684 Msa0173480:CDS
GCATACCAAAAGTGAAGGTG+GGG 0.611673 1_4:+58778396 None:intergenic
ATGGGATCTCTTGGTAGCAG+GGG 0.615385 1_4:-58775409 Msa0173480:intron
CATAAACAACAAAAGTAGGA+AGG 0.615535 1_4:+58778461 None:intergenic
TTTGACATTCCTCCTCCAAG+GGG 0.621730 1_4:-58774137 Msa0173480:CDS
TTGATAGCATTAGAGCTGCT+AGG 0.621778 1_4:-58777341 Msa0173480:CDS
TCACAAGTTGGTTTATGTGG+TGG 0.628952 1_4:-58775251 Msa0173480:CDS
AACTACATGATACTTTAACA+TGG 0.631393 1_4:+58773575 None:intergenic
CTGCAGCATGGGGATTGAGA+TGG 0.633556 1_4:-58774956 Msa0173480:intron
ATCAAACTTTGCCAGCACAA+AGG 0.640448 1_4:+58776605 None:intergenic
AGCTAACCTGCTCTGGACTG+AGG 0.651008 1_4:+58774594 None:intergenic
TGATCATATGCACCCAACAC+AGG 0.654844 1_4:+58777288 None:intergenic
GGAAGGTCGTCCAGAAACAG+TGG 0.656322 1_4:+58778478 None:intergenic
ATGACATTAAATGTCTGCGG+GGG 0.693826 1_4:+58777177 None:intergenic
ATGGTGACTGAAAAGGAACA+GGG 0.704689 1_4:-58774937 Msa0173480:CDS
TATGACATTAAATGTCTGCG+GGG 0.719171 1_4:+58777176 None:intergenic
ACTCAAACGAAAGTCAACCA+AGG 0.720996 1_4:-58774845 Msa0173480:CDS
GGTGGTGAGCTAATTCTTGG+GGG 0.731770 1_4:-58776098 Msa0173480:CDS
AAGCTGCCTAGTGAGACTTG+TGG 0.732793 1_4:-58773919 Msa0173480:exon
GTAAGAGAAACATACCAGAG+AGG 0.774024 1_4:+58774113 None:intergenic
ACTTTGACGATGGAACCCAA+AGG 0.779989 1_4:+58777133 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGATTGAAGATTAAAAT+TGG + chr1_4:58773761-58773780 None:intergenic 15.0%
!! GAATCTATATGATAATTATA+CGG - chr1_4:58774004-58774023 Msa0173480:intron 15.0%
!! AATGTAAAAAATAGACATTA+AGG - chr1_4:58774432-58774451 Msa0173480:intron 15.0%
!!! TTACTACTTTTATGTAAATT+TGG - chr1_4:58774577-58774596 Msa0173480:intron 15.0%
!!! TACTACTTTTATGTAAATTT+GGG - chr1_4:58774578-58774597 Msa0173480:intron 15.0%
!! ATTAATGTATAATTCAAACA+TGG + chr1_4:58775686-58775705 None:intergenic 15.0%
!!! TGTGTATATTTGTATATTTT+TGG - chr1_4:58776391-58776410 Msa0173480:intron 15.0%
!!! AACATGTTGATATTATTTTT+AGG - chr1_4:58776452-58776471 Msa0173480:intron 15.0%
!! AAATTGGTTGAAATTTAAAA+GGG - chr1_4:58778497-58778516 Msa0173480:five_prime_UTR 15.0%
!! TATCATATAATTTATGCTTC+AGG - chr1_4:58773812-58773831 Msa0173480:three_prime_UTR 20.0%
!! ACGGTCTTTATATTTATTTA+TGG - chr1_4:58774023-58774042 Msa0173480:intron 20.0%
!! CGGTCTTTATATTTATTTAT+GGG - chr1_4:58774024-58774043 Msa0173480:intron 20.0%
!! TTGAAACGAATAATAAAACA+AGG + chr1_4:58774488-58774507 None:intergenic 20.0%
!! TTTACATAAAAGTAGTAATG+AGG + chr1_4:58774575-58774594 None:intergenic 20.0%
!! TATTTGAATGCACAATATTA+TGG - chr1_4:58774899-58774918 Msa0173480:CDS 20.0%
!! TTTAATGTCATATTTGATAC+CGG - chr1_4:58774953-58774972 Msa0173480:CDS 20.0%
!!! AAACAAAATTTAGTTTGATC+AGG - chr1_4:58776117-58776136 Msa0173480:CDS 20.0%
!! ATAGTGAATACTGAAAAATA+AGG - chr1_4:58776279-58776298 Msa0173480:intron 20.0%
!! TAGTGAATACTGAAAAATAA+GGG - chr1_4:58776280-58776299 Msa0173480:intron 20.0%
!! AGCTATGATTGAATAATATA+TGG + chr1_4:58776560-58776579 None:intergenic 20.0%
!! AATCAATATTAAGCTCATTT+AGG + chr1_4:58776821-58776840 None:intergenic 20.0%
!!! TTAATATTGATTTTCAGGTA+CGG - chr1_4:58776829-58776848 Msa0173480:CDS 20.0%
!! ATCGAAATACAATGAATTAA+AGG + chr1_4:58776979-58776998 None:intergenic 20.0%
!! TTAATTCATTGTATTTCGAT+TGG - chr1_4:58776979-58776998 Msa0173480:CDS 20.0%
!!! TGTGAATATTTCAGATTTTT+AGG - chr1_4:58777659-58777678 Msa0173480:intron 20.0%
!! TTGATCTATAGTATATTTGT+TGG - chr1_4:58777874-58777893 Msa0173480:intron 20.0%
!!! TTTCAGTATATTTTGAAAAC+TGG - chr1_4:58777918-58777937 Msa0173480:intron 20.0%
!! ATACTTTAATACAACATACA+TGG + chr1_4:58778403-58778422 None:intergenic 20.0%
!! GAAATTGGTTGAAATTTAAA+AGG - chr1_4:58778496-58778515 Msa0173480:five_prime_UTR 20.0%
!! AATTGGTTGAAATTTAAAAG+GGG - chr1_4:58778498-58778517 Msa0173480:five_prime_UTR 20.0%
!!! TACAATGGATTTTGTATACT+TGG + chr1_4:58773605-58773624 None:intergenic 25.0%
! AACACATAAACAACAAAAGT+AGG + chr1_4:58773664-58773683 None:intergenic 25.0%
!!! CTCAAAAGCATTTAGTATAT+GGG + chr1_4:58774306-58774325 None:intergenic 25.0%
!!! ACTCAAAAGCATTTAGTATA+TGG + chr1_4:58774307-58774326 None:intergenic 25.0%
! CGAATAATAAAACAAGGAAA+TGG + chr1_4:58774482-58774501 None:intergenic 25.0%
! TTTATGTAAATTTGGGAGTT+TGG - chr1_4:58774585-58774604 Msa0173480:intron 25.0%
! ATCAATTCTCATAAATCCAT+AGG + chr1_4:58774735-58774754 None:intergenic 25.0%
! AATATGACATTAAATGTCTG+CGG + chr1_4:58774947-58774966 None:intergenic 25.0%
! TCCAAAACATATACTAAGAA+TGG - chr1_4:58775141-58775160 Msa0173480:intron 25.0%
!! ACCATTCTTAGTATATGTTT+TGG + chr1_4:58775145-58775164 None:intergenic 25.0%
! TTACTCATATTCATTTGTAG+TGG - chr1_4:58775180-58775199 Msa0173480:intron 25.0%
! ACATCATGTAAAATAGCATA+TGG - chr1_4:58775290-58775309 Msa0173480:intron 25.0%
! AGTCAAGATAATGTTAAACT+TGG - chr1_4:58775338-58775357 Msa0173480:intron 25.0%
!! AGTTTTTATACAGCAAATCT+TGG - chr1_4:58775429-58775448 Msa0173480:CDS 25.0%
! TTGCATGTCAGAATTAAATA+TGG - chr1_4:58775633-58775652 Msa0173480:CDS 25.0%
! TCTGTTATGTCCATTAATTT+AGG - chr1_4:58775660-58775679 Msa0173480:intron 25.0%
!! CTTCATTTTATCTCTTGTTA+TGG + chr1_4:58775752-58775771 None:intergenic 25.0%
! TTCAAATGTGTAGTTTAATG+CGG - chr1_4:58776147-58776166 Msa0173480:intron 25.0%
!! TATACCTTTTCAGATTGAAA+TGG - chr1_4:58776188-58776207 Msa0173480:intron 25.0%
!! ATACCTTTTCAGATTGAAAT+GGG - chr1_4:58776189-58776208 Msa0173480:intron 25.0%
! ACTATCTTATTGTTGAAGAA+CGG + chr1_4:58776253-58776272 None:intergenic 25.0%
! AAAATAAGGGAGTAATTTAG+TGG - chr1_4:58776293-58776312 Msa0173480:intron 25.0%
!!! AAAGGTTTTAAGATATGGTA+TGG - chr1_4:58776319-58776338 Msa0173480:intron 25.0%
!!! CATTTATACTTTTTGTTGAC+CGG - chr1_4:58776583-58776602 Msa0173480:CDS 25.0%
! AAGGAAATTGTTACTGAATA+TGG - chr1_4:58776677-58776696 Msa0173480:intron 25.0%
!!! TGAGCTTAATATTGATTTTC+AGG - chr1_4:58776824-58776843 Msa0173480:CDS 25.0%
!!! TTAGTTTCTTTTTTTGTCAC+TGG - chr1_4:58777060-58777079 Msa0173480:intron 25.0%
!!! TAGTTTCTTTTTTTGTCACT+GGG - chr1_4:58777061-58777080 Msa0173480:intron 25.0%
!! GTAGTTGAATATTTTATCCT+TGG + chr1_4:58777293-58777312 None:intergenic 25.0%
! ATAATTCGAAACATTAACTC+AGG + chr1_4:58777355-58777374 None:intergenic 25.0%
! AAAATACCTTTCCAAAAGAT+GGG - chr1_4:58777763-58777782 Msa0173480:intron 25.0%
!!! TATATTTTGAAAACTGGAGA+AGG - chr1_4:58777924-58777943 Msa0173480:intron 25.0%
!!! AGCAAGATTTATTTTAAGCA+AGG + chr1_4:58778076-58778095 None:intergenic 25.0%
! GTAGTTTATTACTAGTATGT+AGG - chr1_4:58778221-58778240 Msa0173480:intron 25.0%
! ATATCATGTATCCATGTTTA+AGG - chr1_4:58778446-58778465 Msa0173480:five_prime_UTR 25.0%
CATAAACAACAAAAGTAGGA+AGG + chr1_4:58773660-58773679 None:intergenic 30.0%
CTGAAAAGAAAAGGAATCAA+AGG + chr1_4:58773943-58773962 None:intergenic 30.0%
GCTTCAAAACTGAAAAGAAA+AGG + chr1_4:58773952-58773971 None:intergenic 30.0%
!! GTTAGTGATTAGTCTTACAT+CGG - chr1_4:58774263-58774282 Msa0173480:intron 30.0%
ATAAATCCATAGGAGAAAGA+AGG + chr1_4:58774725-58774744 None:intergenic 30.0%
!! ATAATCCTTCAAAGGTACTA+TGG + chr1_4:58774882-58774901 None:intergenic 30.0%
GCATTCAAATAATCCTTCAA+AGG + chr1_4:58774890-58774909 None:intergenic 30.0%
TATTATGGAGAGATTGGAAT+TGG - chr1_4:58774914-58774933 Msa0173480:CDS 30.0%
ATATGACATTAAATGTCTGC+GGG + chr1_4:58774946-58774965 None:intergenic 30.0%
GAATATGAGTAATGAGAAGA+TGG + chr1_4:58775172-58775191 None:intergenic 30.0%
GGACATTAGAACGTATTAAA+TGG + chr1_4:58775248-58775267 None:intergenic 30.0%
CCTGAATTGACAAGTAAAAA+AGG + chr1_4:58775269-58775288 None:intergenic 30.0%
!!! CCTTTTTTACTTGTCAATTC+AGG - chr1_4:58775266-58775285 Msa0173480:CDS 30.0%
TGTAAAATAGCATATGGATC+TGG - chr1_4:58775296-58775315 Msa0173480:intron 30.0%
! TTTTATACAGCAAATCTTGG+AGG - chr1_4:58775432-58775451 Msa0173480:CDS 30.0%
TATATTGTCCTTGAAACTGT+AGG - chr1_4:58775457-58775476 Msa0173480:CDS 30.0%
AATGAAATCCTACAGTTTCA+AGG + chr1_4:58775468-58775487 None:intergenic 30.0%
!! CAAAGTTTGATGGATTACTT+GGG - chr1_4:58775525-58775544 Msa0173480:intron 30.0%
TCAGATGCAAATGAAATAAC+AGG + chr1_4:58775613-58775632 None:intergenic 30.0%
TCAAACATGGCCTAAATTAA+TGG + chr1_4:58775673-58775692 None:intergenic 30.0%
CCTATACATAAGCACTTATT+TGG + chr1_4:58775723-58775742 None:intergenic 30.0%
CCAAATAAGTGCTTATGTAT+AGG - chr1_4:58775720-58775739 Msa0173480:intron 30.0%
TGTATATCCTAGAGAACTTA+TGG - chr1_4:58775784-58775803 Msa0173480:intron 30.0%
CTTATTTCCATAAGTTCTCT+AGG + chr1_4:58775794-58775813 None:intergenic 30.0%
!! GATGTATAATGGATCACTAA+AGG + chr1_4:58775917-58775936 None:intergenic 30.0%
TTTGTACCTGTGATGTATAA+TGG + chr1_4:58775928-58775947 None:intergenic 30.0%
TATACATCACAGGTACAAAA+TGG - chr1_4:58775929-58775948 Msa0173480:intron 30.0%
!!! TGTTTTCCTTTGAAGTGATT+TGG + chr1_4:58776053-58776072 None:intergenic 30.0%
!!! GGTTGAAAGGTTTTAAGATA+TGG - chr1_4:58776314-58776333 Msa0173480:intron 30.0%
ATACACATTGTACATATGAG+AGG + chr1_4:58776378-58776397 None:intergenic 30.0%
TTACAAAGTGCATCTAATTG+TGG - chr1_4:58776429-58776448 Msa0173480:intron 30.0%
AAGATGTAAGTACATACAGT+TGG + chr1_4:58776536-58776555 None:intergenic 30.0%
!! TGAATATGGAGAGTTGATAT+GGG - chr1_4:58776691-58776710 Msa0173480:intron 30.0%
! TTAAGCTCATTTAGGTTCAA+AGG + chr1_4:58776813-58776832 None:intergenic 30.0%
TGGTAATAATTTGAAGATGC+TGG - chr1_4:58776999-58777018 Msa0173480:CDS 30.0%
CAGTGATTTATACTCTTCAT+TGG - chr1_4:58777028-58777047 Msa0173480:intron 30.0%
! ATTGCAATGCTACAAGATTT+TGG - chr1_4:58777107-58777126 Msa0173480:intron 30.0%
GAATTATCCTATTGCTTTGA+TGG - chr1_4:58777368-58777387 Msa0173480:CDS 30.0%
AATCAATCCATCAAAGCAAT+AGG + chr1_4:58777378-58777397 None:intergenic 30.0%
!!! TTGCTTTGATGGATTGATTT+TGG - chr1_4:58777379-58777398 Msa0173480:CDS 30.0%
!!! CATCTTTTGGAAAGGTATTT+TGG + chr1_4:58777764-58777783 None:intergenic 30.0%
CAAAATACCTTTCCAAAAGA+TGG - chr1_4:58777762-58777781 Msa0173480:intron 30.0%
TTACTCATATCTACATCCAA+AGG - chr1_4:58777831-58777850 Msa0173480:intron 30.0%
! TTGTCCTTTTTCTTTTCTGA+AGG - chr1_4:58778103-58778122 Msa0173480:intron 30.0%
GAATCCTTCAGAAAAGAAAA+AGG + chr1_4:58778110-58778129 None:intergenic 30.0%
!! TTTCTTTTCTGAAGGATTCT+TGG - chr1_4:58778111-58778130 Msa0173480:intron 30.0%
ATGTACATGATCCTTAAACA+TGG + chr1_4:58778460-58778479 None:intergenic 30.0%
TAACATGGATACATAATGCT+TGG + chr1_4:58778531-58778550 None:intergenic 30.0%
! TGAAAGCATACCAAAAGTGA+AGG + chr1_4:58773730-58773749 None:intergenic 35.0%
AGAAGCAACGTGAAAATATG+TGG + chr1_4:58773911-58773930 None:intergenic 35.0%
! ATTTTTGAATATTCCCCACG+TGG - chr1_4:58773974-58773993 Msa0173480:CDS 35.0%
TTAAAGTCAGCAACAATCGA+AGG + chr1_4:58774179-58774198 None:intergenic 35.0%
!! AATGCTTTTGAGTGAAGATG+TGG - chr1_4:58774314-58774333 Msa0173480:intron 35.0%
TTTACAAACGTCAACGAAGT+TGG - chr1_4:58774543-58774562 Msa0173480:intron 35.0%
AAGAAGAAAGTAAGTGAAGG+TGG + chr1_4:58774619-58774638 None:intergenic 35.0%
GGTAAGAAGAAAGTAAGTGA+AGG + chr1_4:58774622-58774641 None:intergenic 35.0%
ACAAATACTTGTTCGCCATA+GGG + chr1_4:58774661-58774680 None:intergenic 35.0%
TATGGCGAACAAGTATTTGT+GGG - chr1_4:58774661-58774680 Msa0173480:CDS 35.0%
GCACAATATTATGGAGAGAT+TGG - chr1_4:58774908-58774927 Msa0173480:CDS 35.0%
TATGACATTAAATGTCTGCG+GGG + chr1_4:58774945-58774964 None:intergenic 35.0%
GAAAAATAGCACTTTGACGA+TGG + chr1_4:58774998-58775017 None:intergenic 35.0%
TACACTTTGCGTGATTTCAT+CGG + chr1_4:58775206-58775225 None:intergenic 35.0%
GAAACTGTAGGATTTCATTG+AGG - chr1_4:58775469-58775488 Msa0173480:CDS 35.0%
AAAGGAAATACTACCTTCAC+GGG + chr1_4:58775498-58775517 None:intergenic 35.0%
CAAAGGAAATACTACCTTCA+CGG + chr1_4:58775499-58775518 None:intergenic 35.0%
!! GCAAAGTTTGATGGATTACT+TGG - chr1_4:58775524-58775543 Msa0173480:intron 35.0%
CACTAAAGGTCTGTTTGAAT+TGG + chr1_4:58775903-58775922 None:intergenic 35.0%
AGTGATCCATTATACATCAC+AGG - chr1_4:58775919-58775938 Msa0173480:CDS 35.0%
!!! TGTTCTCTTTTTGGCTCAAT+GGG - chr1_4:58775979-58775998 Msa0173480:intron 35.0%
GTTGATCCAAATCACTTCAA+AGG - chr1_4:58776044-58776063 Msa0173480:CDS 35.0%
GGAGTAATTTAGTGGTTGAA+AGG - chr1_4:58776301-58776320 Msa0173480:intron 35.0%
!!! TTATTTTTAGGCGTTTGCGA+AGG - chr1_4:58776464-58776483 Msa0173480:intron 35.0%
! ACAACAGTCTGAAATTCAAC+CGG + chr1_4:58776605-58776624 None:intergenic 35.0%
ACTGAAATCAACCATGCTAT+TGG - chr1_4:58776626-58776645 Msa0173480:CDS 35.0%
!! AGTTCTGAGTGTAGAATGTA+AGG - chr1_4:58776658-58776677 Msa0173480:intron 35.0%
!! CTGAATATGGAGAGTTGATA+TGG - chr1_4:58776690-58776709 Msa0173480:intron 35.0%
!! TGTTCACAAGTTGGTTTATG+TGG - chr1_4:58776864-58776883 Msa0173480:intron 35.0%
!! ACTTTCGTTTGAGTTGATTC+TGG + chr1_4:58777267-58777286 None:intergenic 35.0%
CCAAACATTTCGTTCACTAT+CGG - chr1_4:58777486-58777505 Msa0173480:intron 35.0%
!! ATCAAGAGTAAGTTAGCCTT+TGG + chr1_4:58777850-58777869 None:intergenic 35.0%
!! TTCTTGGCGATGTTTTTATG+AGG - chr1_4:58778127-58778146 Msa0173480:intron 35.0%
!! TCTTGGCGATGTTTTTATGA+GGG - chr1_4:58778128-58778147 Msa0173480:intron 35.0%
TATCACACTGTCTTTGACTA+TGG - chr1_4:58778153-58778172 Msa0173480:intron 35.0%
GCACGTATGTAACTACTTAA+TGG - chr1_4:58778278-58778297 Msa0173480:intron 35.0%
ATGTAACTACTTAATGGTGC+AGG - chr1_4:58778284-58778303 Msa0173480:intron 35.0%
CTCTTTCAACACACTGAAAT+TGG - chr1_4:58778481-58778500 Msa0173480:five_prime_UTR 35.0%
ACAAAATCCATTGTACGAGC+AGG - chr1_4:58773610-58773629 Msa0173480:intron 40.0%
AGCATACCAAAAGTGAAGGT+GGG + chr1_4:58773726-58773745 None:intergenic 40.0%
AAGCATACCAAAAGTGAAGG+TGG + chr1_4:58773727-58773746 None:intergenic 40.0%
!! TTCTGGTTTGTTGATGGTCT+TGG - chr1_4:58774339-58774358 Msa0173480:intron 40.0%
CACAAATACTTGTTCGCCAT+AGG + chr1_4:58774662-58774681 None:intergenic 40.0%
CTATGGCGAACAAGTATTTG+TGG - chr1_4:58774660-58774679 Msa0173480:CDS 40.0%
AGGAAGAAGTGAGCATGTTA+AGG + chr1_4:58774705-58774724 None:intergenic 40.0%
CTTCTTCCTTCTTTCTCCTA+TGG - chr1_4:58774716-58774735 Msa0173480:intron 40.0%
! TTGATAGCATTAGAGCTGCT+AGG - chr1_4:58774777-58774796 Msa0173480:intron 40.0%
ATGACATTAAATGTCTGCGG+GGG + chr1_4:58774944-58774963 None:intergenic 40.0%
CTTTGCCTTGTACCAATGAT+GGG + chr1_4:58775118-58775137 None:intergenic 40.0%
TCTTTGCCTTGTACCAATGA+TGG + chr1_4:58775119-58775138 None:intergenic 40.0%
! TATGGATCTGGAGCAATATC+TGG - chr1_4:58775308-58775327 Msa0173480:intron 40.0%
AGGTAGTATTTCCTTTGTGC+TGG - chr1_4:58775502-58775521 Msa0173480:CDS 40.0%
ATCAAACTTTGCCAGCACAA+AGG + chr1_4:58775516-58775535 None:intergenic 40.0%
! TTTGTGCTGGCAAAGTTTGA+TGG - chr1_4:58775515-58775534 Msa0173480:intron 40.0%
!! TTTGATGGATTACTTGGGCT+TGG - chr1_4:58775530-58775549 Msa0173480:intron 40.0%
TTGAAAATGCTGTGCCAGTA+TGG - chr1_4:58775570-58775589 Msa0173480:intron 40.0%
CGTCGAAAAACATACCATAC+TGG + chr1_4:58775587-58775606 None:intergenic 40.0%
ACATCACAGGTACAAAATGG+TGG - chr1_4:58775932-58775951 Msa0173480:intron 40.0%
GCAAGATCTTGTAAATGAGC+AGG - chr1_4:58775956-58775975 Msa0173480:intron 40.0%
! ATGAGCAGGTGTTCTCTTTT+TGG - chr1_4:58775970-58775989 Msa0173480:intron 40.0%
!!! GTGTTCTCTTTTTGGCTCAA+TGG - chr1_4:58775978-58775997 Msa0173480:intron 40.0%
!!! GTTCTCTTTTTGGCTCAATG+GGG - chr1_4:58775980-58775999 Msa0173480:intron 40.0%
ATATGTCCCAGTCACTCAAA+AGG - chr1_4:58776076-58776095 Msa0173480:CDS 40.0%
TATGTCCCAGTCACTCAAAA+GGG - chr1_4:58776077-58776096 Msa0173480:CDS 40.0%
!! AATAGCCCTTTTGAGTGACT+GGG + chr1_4:58776085-58776104 None:intergenic 40.0%
TCGCCCATTTCAATCTGAAA+AGG + chr1_4:58776195-58776214 None:intergenic 40.0%
!!! GAAATGGGCGACTTTTTCAT+TGG - chr1_4:58776204-58776223 Msa0173480:intron 40.0%
CACATTGTACATATGAGAGG+AGG + chr1_4:58776375-58776394 None:intergenic 40.0%
!! AGAGTTGATATGGGATCTCT+TGG - chr1_4:58776700-58776719 Msa0173480:intron 40.0%
TAACAAGAAACACTGAAGGG+TGG + chr1_4:58776748-58776767 None:intergenic 40.0%
GGGTAACAAGAAACACTGAA+GGG + chr1_4:58776751-58776770 None:intergenic 40.0%
AGGGTAACAAGAAACACTGA+AGG + chr1_4:58776752-58776771 None:intergenic 40.0%
!! TCACAAGTTGGTTTATGTGG+TGG - chr1_4:58776867-58776886 Msa0173480:intron 40.0%
TTTGTCACTGGGAAGAGTTT+AGG - chr1_4:58777072-58777091 Msa0173480:intron 40.0%
TAGCATTGCAATGCTGGAAT+AGG + chr1_4:58777099-58777118 None:intergenic 40.0%
ATCTTGTAGCATTGCAATGC+TGG + chr1_4:58777105-58777124 None:intergenic 40.0%
GATTGAGATGGTGACTGAAA+AGG - chr1_4:58777174-58777193 Msa0173480:CDS 40.0%
ATGGTGACTGAAAAGGAACA+GGG - chr1_4:58777181-58777200 Msa0173480:CDS 40.0%
ACTCAAACGAAAGTCAACCA+AGG - chr1_4:58777273-58777292 Msa0173480:CDS 40.0%
!! GTAAGCCTTTTGAAAGATCC+TGG - chr1_4:58777322-58777341 Msa0173480:CDS 40.0%
TCTGACCAGGATCTTTCAAA+AGG + chr1_4:58777330-58777349 None:intergenic 40.0%
ATTAACTCAGGTTTCTGACC+AGG + chr1_4:58777343-58777362 None:intergenic 40.0%
CCGATAGTGAACGAAATGTT+TGG + chr1_4:58777489-58777508 None:intergenic 40.0%
TTTCAAAAGCTAACCTGCTC+TGG + chr1_4:58777534-58777553 None:intergenic 40.0%
! CAATTATGCTGCCCATCTTT+TGG + chr1_4:58777777-58777796 None:intergenic 40.0%
ATTGCAACTGTCTGTCTTAG+TGG - chr1_4:58777948-58777967 Msa0173480:intron 40.0%
TTGCAACTGTCTGTCTTAGT+GGG - chr1_4:58777949-58777968 Msa0173480:intron 40.0%
! TTTTGACATTCCTCCTCCAA+GGG - chr1_4:58777980-58777999 Msa0173480:intron 40.0%
GTAAGAGAAACATACCAGAG+AGG + chr1_4:58778008-58778027 None:intergenic 40.0%
GACTATGGAAATCTCCAACT+TGG - chr1_4:58778168-58778187 Msa0173480:intron 40.0%
AAACTACCACAAGTCTCACT+AGG + chr1_4:58778208-58778227 None:intergenic 40.0%
GGATACATAATGCTTGGACT+GGG + chr1_4:58778525-58778544 None:intergenic 40.0%
TGGATACATAATGCTTGGAC+TGG + chr1_4:58778526-58778545 None:intergenic 40.0%
ACTCTTTCCTGCTCGTACAA+TGG + chr1_4:58773620-58773639 None:intergenic 45.0%
AGGAAAGAGTCCACTGTTTC+TGG - chr1_4:58773630-58773649 Msa0173480:intron 45.0%
! TTCTACCCCACCTTCACTTT+TGG - chr1_4:58773717-58773736 Msa0173480:three_prime_UTR 45.0%
GCATACCAAAAGTGAAGGTG+GGG + chr1_4:58773725-58773744 None:intergenic 45.0%
TAGATTCACGCTATCCACGT+GGG + chr1_4:58773991-58774010 None:intergenic 45.0%
ATAGATTCACGCTATCCACG+TGG + chr1_4:58773992-58774011 None:intergenic 45.0%
AGTCAGCAACAATCGAAGGT+AGG + chr1_4:58774175-58774194 None:intergenic 45.0%
CGATATCCTAACCGATCAGT+AGG - chr1_4:58774216-58774235 Msa0173480:intron 45.0%
TGAGTGAAGATGTGGTGTTC+TGG - chr1_4:58774322-58774341 Msa0173480:intron 45.0%
!! GTGGTGTTCTGGTTTGTTGA+TGG - chr1_4:58774333-58774352 Msa0173480:intron 45.0%
AAACGTCAACGAAGTTGGAC+AGG - chr1_4:58774548-58774567 Msa0173480:intron 45.0%
TACTTTCTTCTTACCCTGCC+TGG - chr1_4:58774627-58774646 Msa0173480:CDS 45.0%
! TGTGGGTTGCTTTCTGTTTC+TGG - chr1_4:58774678-58774697 Msa0173480:CDS 45.0%
! GTGGGTTGCTTTCTGTTTCT+GGG - chr1_4:58774679-58774698 Msa0173480:CDS 45.0%
TAGCATTAGAGCTGCTAGGA+TGG - chr1_4:58774781-58774800 Msa0173480:intron 45.0%
AAAGTCAAGCAGACCTGTGT+TGG - chr1_4:58774817-58774836 Msa0173480:intron 45.0%
AAGTCAAGCAGACCTGTGTT+GGG - chr1_4:58774818-58774837 Msa0173480:intron 45.0%
TGATCATATGCACCCAACAC+AGG + chr1_4:58774833-58774852 None:intergenic 45.0%
!! CAAAGGTACTATGGCATCGT+CGG + chr1_4:58774873-58774892 None:intergenic 45.0%
CGATGCCATAGTACCTTTGA+AGG - chr1_4:58774874-58774893 Msa0173480:CDS 45.0%
ATACCGGAAGTTCGAACCTT+TGG - chr1_4:58774969-58774988 Msa0173480:intron 45.0%
TACCGGAAGTTCGAACCTTT+GGG - chr1_4:58774970-58774989 Msa0173480:intron 45.0%
AACCCAAAGGTTCGAACTTC+CGG + chr1_4:58774975-58774994 None:intergenic 45.0%
ACTTTGACGATGGAACCCAA+AGG + chr1_4:58774988-58775007 None:intergenic 45.0%
CTACACCCATCATTGGTACA+AGG - chr1_4:58775110-58775129 Msa0173480:intron 45.0%
ACTTGGCGATGTTGTTGTCA+AGG - chr1_4:58775355-58775374 Msa0173480:intron 45.0%
CGATGTTGTTGTCAAGGATG+TGG - chr1_4:58775361-58775380 Msa0173480:intron 45.0%
! ATTACTTGGGCTTGGCTTTC+AGG - chr1_4:58775538-58775557 Msa0173480:intron 45.0%
TGGGGATCCAAAAGCGAAAA+AGG - chr1_4:58775998-58776017 Msa0173480:intron 45.0%
GGGGATCCAAAAGCGAAAAA+GGG - chr1_4:58775999-58776018 Msa0173480:intron 45.0%
GATCCAAAAGCGAAAAAGGG+TGG - chr1_4:58776002-58776021 Msa0173480:intron 45.0%
!! TCACCACCCTTTTTCGCTTT+TGG + chr1_4:58776008-58776027 None:intergenic 45.0%
AAGGGTGGTGAGCTAATTCT+TGG - chr1_4:58776017-58776036 Msa0173480:intron 45.0%
AGGGTGGTGAGCTAATTCTT+GGG - chr1_4:58776018-58776037 Msa0173480:intron 45.0%
!! CAATAGCCCTTTTGAGTGAC+TGG + chr1_4:58776086-58776105 None:intergenic 45.0%
CAGTCACTCAAAAGGGCTAT+TGG - chr1_4:58776084-58776103 Msa0173480:CDS 45.0%
!!! ATGGGCGACTTTTTCATTGG+AGG - chr1_4:58776207-58776226 Msa0173480:intron 45.0%
TTCATTGGAGGTCTCTCAAC+AGG - chr1_4:58776219-58776238 Msa0173480:intron 45.0%
!! TTTTTAGGCGTTTGCGAAGG+TGG - chr1_4:58776467-58776486 Msa0173480:intron 45.0%
! TGTGCTGCTATTGTGGATTC+AGG - chr1_4:58776491-58776510 Msa0173480:intron 45.0%
TCAGGAACATCATTGCTTGC+TGG - chr1_4:58776509-58776528 Msa0173480:intron 45.0%
AACCATGCTATTGGAGCTGA+AGG - chr1_4:58776635-58776654 Msa0173480:CDS 45.0%
! ATATGGGATCTCTTGGTAGC+AGG - chr1_4:58776707-58776726 Msa0173480:intron 45.0%
! TATGGGATCTCTTGGTAGCA+GGG - chr1_4:58776708-58776727 Msa0173480:intron 45.0%
AGAGCAACGACTACAAGTCA+GGG + chr1_4:58776771-58776790 None:intergenic 45.0%
AAGAGCAACGACTACAAGTC+AGG + chr1_4:58776772-58776791 None:intergenic 45.0%
!!! ATTGATTTTCAGGTACGGCC+TGG - chr1_4:58776834-58776853 Msa0173480:intron 45.0%
ACTTGTGAACACACATCACC+AGG + chr1_4:58776855-58776874 None:intergenic 45.0%
GGTGATGTGTGTTCACAAGT+TGG - chr1_4:58776855-58776874 Msa0173480:intron 45.0%
TTGGTTTATGTGGTGGCAAG+AGG - chr1_4:58776874-58776893 Msa0173480:intron 45.0%
TGGTTTATGTGGTGGCAAGA+GGG - chr1_4:58776875-58776894 Msa0173480:intron 45.0%
! GCAAGAGGGTACAATCTAAG+AGG - chr1_4:58776889-58776908 Msa0173480:intron 45.0%
TCTTTGAATCCTCTGCAGCA+TGG - chr1_4:58777150-58777169 Msa0173480:CDS 45.0%
CTTTGAATCCTCTGCAGCAT+GGG - chr1_4:58777151-58777170 Msa0173480:CDS 45.0%
TTTGAATCCTCTGCAGCATG+GGG - chr1_4:58777152-58777171 Msa0173480:CDS 45.0%
GATGGTGACTGAAAAGGAAC+AGG - chr1_4:58777180-58777199 Msa0173480:CDS 45.0%
CCAAATCACAAGCATCTGAC+AGG + chr1_4:58777242-58777261 None:intergenic 45.0%
CCTGTCAGATGCTTGTGATT+TGG - chr1_4:58777239-58777258 Msa0173480:CDS 45.0%
!! TCTACTACCGACTCTCCATT+TGG + chr1_4:58777444-58777463 None:intergenic 45.0%
!! ATGCTGCCCATCTTTTGGAA+AGG + chr1_4:58777772-58777791 None:intergenic 45.0%
! CTTTTGACATTCCTCCTCCA+AGG - chr1_4:58777979-58777998 Msa0173480:intron 45.0%
TTTGACATTCCTCCTCCAAG+GGG - chr1_4:58777981-58778000 Msa0173480:intron 45.0%
CAGCTTCAGCAAAACCAAGT+TGG + chr1_4:58778185-58778204 None:intergenic 45.0%
!! AAAAAAATAATAAAGAAAAT+AGG + chr1_4:58773850-58773869 None:intergenic 5.0%
AGATTCACGCTATCCACGTG+GGG + chr1_4:58773990-58774009 None:intergenic 50.0%
TCCTAACCGATCAGTAGGCA+AGG - chr1_4:58774221-58774240 Msa0173480:intron 50.0%
TCCTTGCCTACTGATCGGTT+AGG + chr1_4:58774225-58774244 None:intergenic 50.0%
AACCGATCAGTAGGCAAGGA+AGG - chr1_4:58774225-58774244 Msa0173480:intron 50.0%
CACCTTCCTTGCCTACTGAT+CGG + chr1_4:58774230-58774249 None:intergenic 50.0%
! TCAGTAGGCAAGGAAGGTGT+TGG - chr1_4:58774231-58774250 Msa0173480:intron 50.0%
TAGGGAAAATCTGCCAGGCA+GGG + chr1_4:58774643-58774662 None:intergenic 50.0%
ATAGGGAAAATCTGCCAGGC+AGG + chr1_4:58774644-58774663 None:intergenic 50.0%
! TGCCTGGCAGATTTTCCCTA+TGG - chr1_4:58774643-58774662 Msa0173480:CDS 50.0%
GGCATCGTCGGATGATTTAC+TGG + chr1_4:58774861-58774880 None:intergenic 50.0%
TTGCCTGCTACACCCATCAT+TGG - chr1_4:58775103-58775122 Msa0173480:intron 50.0%
!! GTACCAATGATGGGTGTAGC+AGG + chr1_4:58775109-58775128 None:intergenic 50.0%
TTCATTGAGGCTACCCGTGA+AGG - chr1_4:58775482-58775501 Msa0173480:CDS 50.0%
GGGTGGTGAGCTAATTCTTG+GGG - chr1_4:58776019-58776038 Msa0173480:intron 50.0%
GGTGGTGAGCTAATTCTTGG+GGG - chr1_4:58776020-58776039 Msa0173480:intron 50.0%
CACTCAAAAGGGCTATTGGC+AGG - chr1_4:58776088-58776107 Msa0173480:CDS 50.0%
CTCCTTCAGCTCCAATAGCA+TGG + chr1_4:58776640-58776659 None:intergenic 50.0%
! ATGGGATCTCTTGGTAGCAG+GGG - chr1_4:58776709-58776728 Msa0173480:intron 50.0%
GAGAGCTTGCCAAGTCCAAA+TGG - chr1_4:58777426-58777445 Msa0173480:CDS 50.0%
GCCAAGTCCAAATGGAGAGT+CGG - chr1_4:58777434-58777453 Msa0173480:CDS 50.0%
! ACCGACTCTCCATTTGGACT+TGG + chr1_4:58777438-58777457 None:intergenic 50.0%
AAGCTGCCTAGTGAGACTTG+TGG - chr1_4:58778199-58778218 Msa0173480:intron 50.0%
GGAAGGTCGTCCAGAAACAG+TGG + chr1_4:58773643-58773662 None:intergenic 55.0%
CGCCATAGGGAAAATCTGCC+AGG + chr1_4:58774648-58774667 None:intergenic 55.0%
! AGGTGGCTGTGCTGCTATTG+TGG - chr1_4:58776484-58776503 Msa0173480:intron 55.0%
TCTCAATCCCCATGCTGCAG+AGG + chr1_4:58777162-58777181 None:intergenic 55.0%
CTGCAGCATGGGGATTGAGA+TGG - chr1_4:58777162-58777181 Msa0173480:CDS 55.0%
TTTCGTCCTCAGTCCAGAGC+AGG - chr1_4:58777518-58777537 Msa0173480:intron 55.0%
! AGCTAACCTGCTCTGGACTG+AGG + chr1_4:58777527-58777546 None:intergenic 55.0%
ACATACCAGAGAGGACCCCT+TGG + chr1_4:58777999-58778018 None:intergenic 55.0%
TACCAGAGAGGACCCCTTGG+AGG + chr1_4:58777996-58778015 None:intergenic 60.0%
CAGAGAGGACCCCTTGGAGG+AGG + chr1_4:58777993-58778012 None:intergenic 65.0%
CTCCTCCAAGGGGTCCTCTC+TGG - chr1_4:58777991-58778010 Msa0173480:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 58773578 58778562 58773578 ID=Msa0173480;Name=Msa0173480
chr1_4 mRNA 58773578 58778562 58773578 ID=Msa0173480-mRNA-1;Parent=Msa0173480;Name=Msa0173480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=170|0.92|0.86|1|0.92|0.86|15|284|488
chr1_4 exon 58773578 58773608 58773578 ID=Msa0173480-mRNA-1:exon:18295;Parent=Msa0173480-mRNA-1
chr1_4 exon 58773678 58774015 58773678 ID=Msa0173480-mRNA-1:exon:18294;Parent=Msa0173480-mRNA-1
chr1_4 exon 58774128 58774216 58774128 ID=Msa0173480-mRNA-1:exon:18293;Parent=Msa0173480-mRNA-1
chr1_4 exon 58774601 58774720 58774601 ID=Msa0173480-mRNA-1:exon:18292;Parent=Msa0173480-mRNA-1
chr1_4 exon 58774819 58774972 58774819 ID=Msa0173480-mRNA-1:exon:18291;Parent=Msa0173480-mRNA-1
chr1_4 exon 58775230 58775294 58775230 ID=Msa0173480-mRNA-1:exon:18290;Parent=Msa0173480-mRNA-1
chr1_4 exon 58775410 58775523 58775410 ID=Msa0173480-mRNA-1:exon:18289;Parent=Msa0173480-mRNA-1
chr1_4 exon 58775602 58775666 58775602 ID=Msa0173480-mRNA-1:exon:18288;Parent=Msa0173480-mRNA-1
chr1_4 exon 58775900 58775939 58775900 ID=Msa0173480-mRNA-1:exon:18287;Parent=Msa0173480-mRNA-1
chr1_4 exon 58776031 58776162 58776031 ID=Msa0173480-mRNA-1:exon:18286;Parent=Msa0173480-mRNA-1
chr1_4 exon 58776572 58776661 58776572 ID=Msa0173480-mRNA-1:exon:18285;Parent=Msa0173480-mRNA-1
chr1_4 exon 58776758 58776852 58776758 ID=Msa0173480-mRNA-1:exon:18284;Parent=Msa0173480-mRNA-1
chr1_4 exon 58776978 58777038 58776978 ID=Msa0173480-mRNA-1:exon:18283;Parent=Msa0173480-mRNA-1
chr1_4 exon 58777122 58777487 58777122 ID=Msa0173480-mRNA-1:exon:18282;Parent=Msa0173480-mRNA-1
chr1_4 exon 58778402 58778562 58778402 ID=Msa0173480-mRNA-1:exon:18281;Parent=Msa0173480-mRNA-1
chr1_4 five_prime_UTR 58778402 58778562 58778402 ID=Msa0173480-mRNA-1:five_prime_utr;Parent=Msa0173480-mRNA-1
chr1_4 five_prime_UTR 58777479 58777487 58777479 ID=Msa0173480-mRNA-1:five_prime_utr;Parent=Msa0173480-mRNA-1
chr1_4 CDS 58777122 58777478 58777122 ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4 CDS 58776978 58777038 58776978 ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4 CDS 58776758 58776852 58776758 ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4 CDS 58776572 58776661 58776572 ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4 CDS 58776031 58776162 58776031 ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4 CDS 58775900 58775939 58775900 ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4 CDS 58775602 58775666 58775602 ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4 CDS 58775410 58775523 58775410 ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4 CDS 58775230 58775294 58775230 ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4 CDS 58774819 58774972 58774819 ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4 CDS 58774601 58774720 58774601 ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4 CDS 58774128 58774216 58774128 ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4 CDS 58773931 58774015 58773931 ID=Msa0173480-mRNA-1:cds;Parent=Msa0173480-mRNA-1
chr1_4 three_prime_UTR 58773678 58773930 58773678 ID=Msa0173480-mRNA-1:three_prime_utr;Parent=Msa0173480-mRNA-1
chr1_4 three_prime_UTR 58773578 58773608 58773578 ID=Msa0173480-mRNA-1:three_prime_utr;Parent=Msa0173480-mRNA-1
Gene Sequence

>Msa0173480

ATGGCGAACAAGTATTTGTGGGTTGCTTTCTGTTTCTGGGCCTTAACATGCTCACTTCTTCCTTCTTTCTCCTATGGATTTATGAGAATTGATTTGAAGAAGAGAACTCTAGATCTTGATAGCATTAGAGCTGCTAGGATGGTAAGAGAAAAGCTAAAGTCAAGCAGACCTGTGTTGGGTGCATATGATCAGTATACCAGTAAATCATCCGACGATGCCATAGTACCTTTGAAGGATTATTTGAATGCACAATATTATGGAGAGATTGGAATTGGTACACCCCCGCAGACATTTAATGTCATATTTGATACCGGAAGTTCGAACCTTTGGGTTCCATCGTCAAAGTGCTATTTTTCTATTGCCTGCTACACCCATCATTGGTACAAGGCAAAGAAATCCAAAACATATACTAAGAATGGAACATCATGTAAAATAGCATATGGATCTGGAGCAATATCTGGTTTTTTCAGTCAAGATAATGTTAAACTTGGCGATGTTGTTGTCAAGGATGTGGATTTCATTGAGGCTACCCGTGAAGGTAGTATTTCCTTTGTGCTGGCAAAGTTTGATGGATTACTTGGGCTTGGCTTTCAGGAGATCTCTGTGTTCTCTTTTTGGCTCAATGGGGATCCAAAAGCGAAAAAGGGTGGTGAGCTAATTCTTGGGGGTGTTGATCCAAATCACTTCAAAGGAAAACATACATATGTCCCAGTCACTCAAAAGGGCTATTGGCAGATTGAAATGGGCGACTTTTTCATTGGAGGTCTCTCAACAGGCGTTTGCGAAGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCATTGCTTGCTGGTCCAACTACTGTTGTGACTGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTGAGTGTAGAATGTAAGGAAATTGTTACTGAATATGGAGAGTTGATATGGGATCTCTTGGTAGCAGGGGTACGGCCTGGTGATGTGTGTTCACAAGTTGGTTTATGTGGTGGCAAGAGGGTACAATCTAAGAGCATGGGGATTGAGATGGTGACTGAAAAGGAACAGGGAGAGTTGTCTGCTAAAGATACTGCTTTGTGTTCTTCCTGTCAGATGCTTGTGATTTGGATCCAGAATCAACTCAAACGAAAGTCAACCAAGGATAAAATATTCAACTACGTAAATCAACTCTGCGAGAGCTTGCCAAGTCCAAATGGAGAGTCGGTAGTAGACTGTAATAGCATTTATCAATTGCCAAACATTTCGTTCACTATCGGAGAGAAATCTTTCGTCCTCAGTCCAGAGCAGTATATTTTGAAAACTGGAGAAGGCATTGCAACTGTCTGTCTTAGTGGGTTTATTGCTTTTGACATTCCTCCTCCAAGGGGTCCTCTCTGGATTCTTGGCGATGTTTTTATGAGGGTATATCACACTGTCTTTGACTATGGAAATCTCCAACTTGGTTTTGCTGAAGCTGCCTAG

Protein sequence

>Msa0173480

MANKYLWVAFCFWALTCSLLPSFSYGFMRIDLKKRTLDLDSIRAARMVREKLKSSRPVLGAYDQYTSKSSDDAIVPLKDYLNAQYYGEIGIGTPPQTFNVIFDTGSSNLWVPSSKCYFSIACYTHHWYKAKKSKTYTKNGTSCKIAYGSGAISGFFSQDNVKLGDVVVKDVDFIEATREGSISFVLAKFDGLLGLGFQEISVFSFWLNGDPKAKKGGELILGGVDPNHFKGKHTYVPVTQKGYWQIEMGDFFIGGLSTGVCEGGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSVECKEIVTEYGELIWDLLVAGVRPGDVCSQVGLCGGKRVQSKSMGIEMVTEKEQGELSAKDTALCSSCQMLVIWIQNQLKRKSTKDKIFNYVNQLCESLPSPNGESVVDCNSIYQLPNISFTIGEKSFVLSPEQYILKTGEGIATVCLSGFIAFDIPPPRGPLWILGDVFMRVYHTVFDYGNLQLGFAEAA*