AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0714380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0714380 MtrunA17_Chr5g0401611 98.638 514 7 0 1 514 1 514 0.0 1023
Msa0714380 MtrunA17_Chr4g0053701 84.708 497 70 1 18 514 25 515 0.0 848
Msa0714380 MtrunA17_Chr3g0134491 77.282 471 101 1 24 494 44 508 0.0 753
Msa0714380 MtrunA17_Chr8g0347551 67.223 479 153 1 16 494 51 525 0.0 679
Msa0714380 MtrunA17_Chr3g0124991 43.077 455 235 8 52 490 34 480 1.46e-107 330
Msa0714380 MtrunA17_Chr2g0333811 41.667 456 244 8 51 491 44 492 4.36e-106 327
Msa0714380 MtrunA17_Chr3g0124971 40.162 493 268 9 16 490 4 487 2.57e-100 312
Msa0714380 MtrunA17_Chr4g0012701 77.215 79 17 1 1 79 1 78 1.47e-29 110
Msa0714380 MtrunA17_Chr7g0264231 26.824 425 257 14 61 466 38 427 1.68e-26 114
Msa0714380 MtrunA17_Chr2g0309271 26.836 354 237 9 97 444 3 340 4.17e-26 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0714380 AT2G23150.1 81.933 476 85 1 25 500 27 501 0.0 805
Msa0714380 AT5G67330.1 76.087 506 115 2 2 507 5 504 0.0 778
Msa0714380 AT1G47240.1 78.243 478 100 1 17 494 34 507 0.0 777
Msa0714380 AT4G18790.1 67.775 481 148 1 11 491 33 506 0.0 665
Msa0714380 AT1G15960.1 42.619 420 227 7 51 463 34 446 8.63e-105 323
Msa0714380 AT1G80830.1 42.619 420 227 7 51 463 42 454 1.96e-101 315
Msa0714380 AT1G80830.2 42.619 420 227 7 51 463 42 454 1.96e-101 315
Msa0714380 AT5G03280.1 25.389 386 265 9 61 439 24 393 3.51e-29 122

Find 147 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATAACTTGCAATGATTC+AGG 0.220051 5_1:-7022969 Msa0714380:three_prime_UTR
CATAGTTTCTTCCATGAAAA+TGG 0.220776 5_1:+7026596 None:intergenic
TATTCCCAATCCTGTATATA+TGG 0.228743 5_1:-7024494 Msa0714380:CDS
CTCTCATTTGCATGGATGTT+TGG 0.230544 5_1:-7025000 Msa0714380:CDS
TTCCTCTTTCTTGAGAATTA+TGG 0.232223 5_1:-7025072 Msa0714380:CDS
AGTGGTGGTACCTTATTTAT+TGG 0.241079 5_1:-7022943 Msa0714380:three_prime_UTR
GTAATGGCCTTGTTCCTCTT+TGG 0.242402 5_1:-7026259 Msa0714380:CDS
CTTGGGCAAGGATTGTTCTT+TGG 0.245807 5_1:-7026358 Msa0714380:CDS
TGCCGTTCTTATTGCTATAA+TGG 0.260123 5_1:-7025025 Msa0714380:CDS
GGTTTCAAAGGAACAAATAA+TGG 0.283702 5_1:-7024211 Msa0714380:CDS
TATACATGCATTATATTTGT+AGG 0.299436 5_1:+7022746 None:intergenic
CTTAACGTCATAGACTTAAA+AGG 0.303904 5_1:+7022821 None:intergenic
TAATGGCCTTGTTCCTCTTT+GGG 0.305235 5_1:-7026258 Msa0714380:CDS
TCTTATGTGGGCTACGGCTA+TGG 0.312128 5_1:-7026465 Msa0714380:CDS
CGCTGTTATGGCTTCTTATG+TGG 0.313493 5_1:-7026478 Msa0714380:CDS
TCTGATATTCAAGAGGTTAT+AGG 0.318147 5_1:-7026308 Msa0714380:CDS
CTGATATTCAAGAGGTTATA+GGG 0.327415 5_1:-7026307 Msa0714380:CDS
TAGGGAGTGCTATTGCTATT+AGG 0.333861 5_1:-7026289 Msa0714380:CDS
AGATCTCCTTCCAAGTTTCC+AGG 0.335579 5_1:+7026527 None:intergenic
AAGCGTGTTTAATTTGATAT+TGG 0.345752 5_1:+7022690 None:intergenic
CTTCAATCTGGTGCAATTGC+TGG 0.345914 5_1:-7026506 Msa0714380:CDS
TTGCTGGGTATTCGCTGTTA+TGG 0.347044 5_1:-7026490 Msa0714380:CDS
ATTGATTCCCTTGCTTTGTT+TGG 0.349044 5_1:-7024232 Msa0714380:CDS
GAATTATGGTGTGAGGAAAT+TGG 0.350066 5_1:-7025058 Msa0714380:CDS
TTCCTGGCTTGTGGCTGCTC+TGG 0.351790 5_1:-7023339 Msa0714380:CDS
GACAAATATATTAATAATAA+AGG 0.352339 5_1:+7024617 None:intergenic
TCCTGTATATATGGGGTATT+GGG 0.357893 5_1:-7024485 Msa0714380:CDS
GTACAGACAACCAATAAATA+AGG 0.360066 5_1:+7022933 None:intergenic
CTTATGTGGGCTACGGCTAT+GGG 0.366792 5_1:-7026464 Msa0714380:CDS
AACAGCTTGTTGTATAGTTC+TGG 0.368091 5_1:+7024788 None:intergenic
GTTTCAAAGGAACAAATAAT+GGG 0.368092 5_1:-7024210 Msa0714380:CDS
TCTGAAAAGGTTGTCGTTGT+TGG 0.368268 5_1:-7026674 Msa0714380:CDS
GCTCTGGTGATAGTGATAAA+TGG 0.371973 5_1:-7023323 Msa0714380:CDS
ACGTAACGGAGCTTGAAATA+AGG 0.375796 5_1:+7023201 None:intergenic
TAGCGCAATGGTGGACTCTA+TGG 0.377756 5_1:+7024647 None:intergenic
CAGTACCTTCAGGAGAAGTA+TGG 0.378008 5_1:-7024525 Msa0714380:CDS
ATCCTGTATATATGGGGTAT+TGG 0.391603 5_1:-7024486 Msa0714380:CDS
CTTGCTTTGTTTGGTTTCAA+AGG 0.392387 5_1:-7024223 Msa0714380:CDS
ACAAATAATAAGCATTAGTA+TGG 0.398746 5_1:+7022996 None:intergenic
TGTTGCTACGGGGAGACATT+TGG 0.399325 5_1:-7026408 Msa0714380:CDS
ATGACTGAAGTTGCTTTGAT+TGG 0.400536 5_1:-7026332 Msa0714380:CDS
GCAGTAACATACCAAGTTAC+TGG 0.403560 5_1:+7022884 None:intergenic
CGCTTACGATTCATCTGAAA+AGG 0.410529 5_1:-7026687 Msa0714380:CDS
TTTCAATACAGACCATTTCC+TGG 0.412146 5_1:-7023355 Msa0714380:intron
TTAGTATGGTCAATAAGAAT+AGG 0.413825 5_1:+7023010 None:intergenic
CAACAAGCTGTTGGAGTTGT+TGG 0.415507 5_1:-7024777 Msa0714380:CDS
GGCCTTGTTCCTCTTTGGGC+TGG 0.416642 5_1:-7026254 Msa0714380:CDS
ATGGTACTGAAATAGCAAAT+AGG 0.419910 5_1:-7024569 Msa0714380:CDS
ATAATGGGCACTTTCAAGAT+TGG 0.421189 5_1:-7024195 Msa0714380:CDS
AGCAAGGGAATCAATGCAAA+AGG 0.422846 5_1:+7024240 None:intergenic
ATTCCCAATCCTGTATATAT+GGG 0.424368 5_1:-7024493 Msa0714380:CDS
ATAGTTCTGGAGCTAAGTTT+AGG 0.430966 5_1:+7024801 None:intergenic
GATGGTGTTGATGTTCTTGT+TGG 0.436854 5_1:-7024964 Msa0714380:intron
TTCGTAGGCTTCTTCTTCGT+CGG 0.440294 5_1:+7026649 None:intergenic
TGCTCTTGTTCAATCCAGGC+AGG 0.441118 5_1:-7024718 Msa0714380:CDS
TACCCCATATATACAGGATT+GGG 0.442489 5_1:+7024490 None:intergenic
TAATAACTTGCAATGATTCA+GGG 0.443476 5_1:-7022968 Msa0714380:three_prime_UTR
AAATGCAGGGCAGTACCTTC+AGG 0.445908 5_1:-7024535 Msa0714380:CDS
TTGTCATTACTGCTTTAGAT+TGG 0.452490 5_1:-7026229 Msa0714380:intron
CAGTGTAGATGCCAGTAACT+TGG 0.453546 5_1:-7022895 Msa0714380:three_prime_UTR
AGCAGCCACAAGCCAGGAAA+TGG 0.465152 5_1:+7023343 None:intergenic
GGTCAGAGTAGCACTATTAC+TGG 0.465242 5_1:-7024450 Msa0714380:CDS
GCAAGGTTAGGTGTTGCTAC+GGG 0.467938 5_1:-7026419 Msa0714380:CDS
TAGTATGGTCAATAAGAATA+GGG 0.470343 5_1:+7023011 None:intergenic
GGATGAGGGCGTTGATTACT+CGG 0.472145 5_1:-7024371 Msa0714380:CDS
TATTGGACGTGAAAAGAAAC+AGG 0.472918 5_1:+7022707 None:intergenic
GCTGTTATGGCTTCTTATGT+GGG 0.476897 5_1:-7026477 Msa0714380:CDS
CACCATAATTCTCAAGAAAG+AGG 0.481932 5_1:+7025070 None:intergenic
ATTCTGCTCTTGTTCAATCC+AGG 0.482576 5_1:-7024722 Msa0714380:CDS
CTATGGTTATTCAGTGGACC+AGG 0.490109 5_1:-7026578 Msa0714380:CDS
TGTCACAACTGTGTTTGCTA+AGG 0.491481 5_1:-7024598 Msa0714380:CDS
ACCCAATACCCCATATATAC+AGG 0.494023 5_1:+7024484 None:intergenic
TACGAAGCTGACGTGGACTC+TGG 0.498286 5_1:-7026632 Msa0714380:CDS
ACAAGAACATCAACACCATC+TGG 0.500462 5_1:+7024967 None:intergenic
GTCACAACTGTGTTTGCTAA+GGG 0.500490 5_1:-7024597 Msa0714380:CDS
TTGGAAGGAGATCTTCAATC+TGG 0.500957 5_1:-7026518 Msa0714380:CDS
AGCAAGGTTAGGTGTTGCTA+CGG 0.506542 5_1:-7026420 Msa0714380:CDS
ATTCCTCAAAATCATGAAGT+AGG 0.509274 5_1:-7023074 Msa0714380:three_prime_UTR
TTCAATCTGGTGCAATTGCT+GGG 0.512314 5_1:-7026505 Msa0714380:CDS
ATACCCCATATATACAGGAT+TGG 0.515369 5_1:+7024489 None:intergenic
GTTGTTCTAACAGAGGTTGT+TGG 0.516654 5_1:+7026732 None:intergenic
TTGGATCCTGGAAACTTGGA+AGG 0.517550 5_1:-7026533 Msa0714380:CDS
AGGATCGGTCTTGTAAATGC+AGG 0.518450 5_1:-7024549 Msa0714380:CDS
ATGGCTTCTTATGTGGGCTA+CGG 0.520318 5_1:-7026471 Msa0714380:CDS
ACTATTACTGGTACATATGC+TGG 0.527712 5_1:-7024438 Msa0714380:CDS
AGAACTATAAATTATTCTTG+TGG 0.534360 5_1:+7027869 None:intergenic
GTAGAGATGAGTATCCTACT+TGG 0.535483 5_1:-7026376 Msa0714380:CDS
CAAGATTGGCTCTGTCCTCA+AGG 0.536538 5_1:-7024181 Msa0714380:intron
ATAAGTGCAACTATCATAGT+CGG 0.536590 5_1:+7024333 None:intergenic
AGAGTCCACGTCAGCTTCGT+AGG 0.542462 5_1:+7026634 None:intergenic
TAATGGCTCTCTCATTTGCA+TGG 0.545987 5_1:-7025008 Msa0714380:CDS
TAAGTGCAACTATCATAGTC+GGG 0.551179 5_1:+7024334 None:intergenic
GATCGAGTTAATCTTTGCCA+AGG 0.551708 5_1:+7023173 None:intergenic
ACAGACCATTTCCTGGCTTG+TGG 0.551762 5_1:-7023348 Msa0714380:intron
TTGCAATGATTCAGGGGCAG+TGG 0.551880 5_1:-7022961 Msa0714380:three_prime_UTR
GCTATACTCATTAGAAAACC+TGG 0.552918 5_1:+7026560 None:intergenic
CAATGATTCAGGGGCAGTGG+TGG 0.554290 5_1:-7022958 Msa0714380:three_prime_UTR
TCTTGTTGTTGTTCTAACAG+AGG 0.555158 5_1:+7026725 None:intergenic
CTTTGAAACCAAACAAAGCA+AGG 0.557493 5_1:+7024224 None:intergenic
GTGGATAATGATTCGCGTTG+CGG 0.557738 5_1:+7026766 None:intergenic
TTAGAACAACAACAAGAAGA+AGG 0.558025 5_1:-7026719 Msa0714380:CDS
GGTATTGGGTTACTAGCAGC+TGG 0.560371 5_1:-7024471 Msa0714380:CDS
CACCAGAGCAGCCACAAGCC+AGG 0.561920 5_1:+7023337 None:intergenic
AGAACTATACAACAAGCTGT+TGG 0.566192 5_1:-7024786 Msa0714380:CDS
CACTGCTCCACTCACTTCAG+AGG 0.566376 5_1:+7023277 None:intergenic
GCAAGGGAATCAATGCAAAA+GGG 0.569154 5_1:+7024241 None:intergenic
TTCTTGAGAATTATGGTGTG+AGG 0.571214 5_1:-7025065 Msa0714380:CDS
TAGAGATGAGTATCCTACTT+GGG 0.572208 5_1:-7026375 Msa0714380:CDS
CTGTAAAATTTGATATACAA+TGG 0.572483 5_1:-7022857 Msa0714380:three_prime_UTR
AGAACAATCCTTGCCCAAGT+AGG 0.575207 5_1:+7026362 None:intergenic
TTTGAAACCAAACAAAGCAA+GGG 0.595987 5_1:+7024225 None:intergenic
GGAGACAACTAGCGCAATGG+TGG 0.598232 5_1:+7024638 None:intergenic
CGCCTCCATACTTCTCCTGA+AGG 0.601191 5_1:+7024520 None:intergenic
AGTTTCTTCCATGAAAATGG+TGG 0.601886 5_1:+7026599 None:intergenic
CACCAGCCCAAAGAGGAACA+AGG 0.602260 5_1:+7026252 None:intergenic
ACTTATATTTGATTCTTCAG+AGG 0.602962 5_1:-7024316 Msa0714380:CDS
ATGAGTATCCTACTTGGGCA+AGG 0.603524 5_1:-7026370 Msa0714380:CDS
ATATGCTGGACAATTCATCA+TGG 0.605595 5_1:-7024424 Msa0714380:CDS
AAACTAGTCACTGTCGAGTG+TGG 0.612021 5_1:+7026828 None:intergenic
GATTGGTTCTGATATTCAAG+AGG 0.612261 5_1:-7026315 Msa0714380:CDS
CAGAGGTTGTTGGTGAGACA+TGG 0.620954 5_1:+7026742 None:intergenic
AGAAGCCTACGAAGCTGACG+TGG 0.623584 5_1:-7026639 Msa0714380:CDS
GGATCGGTCTTGTAAATGCA+GGG 0.624462 5_1:-7024548 Msa0714380:CDS
AGCCATTATAGCAATAAGAA+CGG 0.624673 5_1:+7025023 None:intergenic
CTTCAGGAGAAGTATGGAGG+CGG 0.626449 5_1:-7024519 Msa0714380:CDS
GCTGGACAATTCATCATGGG+TGG 0.626939 5_1:-7024420 Msa0714380:CDS
TATGCTGGACAATTCATCAT+GGG 0.627133 5_1:-7024423 Msa0714380:CDS
AATAACTTGCAATGATTCAG+GGG 0.628208 5_1:-7022967 Msa0714380:three_prime_UTR
ATGACAACACCAGCCCAAAG+AGG 0.629953 5_1:+7026245 None:intergenic
AATTGAGAGCTTCTTGAACG+CGG 0.634426 5_1:+7024676 None:intergenic
ACTGAAATAGCAAATAGGAT+CGG 0.636009 5_1:-7024564 Msa0714380:CDS
TTATGTGGGCTACGGCTATG+GGG 0.641019 5_1:-7026463 Msa0714380:CDS
AAAGGAGACAACTAGCGCAA+TGG 0.641305 5_1:+7024635 None:intergenic
AAGAAACTATGGTTATTCAG+TGG 0.641832 5_1:-7026584 Msa0714380:CDS
TTCCCAATCCTGTATATATG+GGG 0.642639 5_1:-7024492 Msa0714380:CDS
TACCTTCAGGAGAAGTATGG+AGG 0.648168 5_1:-7024522 Msa0714380:CDS
TTGCCAAGGTGAAAACGTAA+CGG 0.654921 5_1:+7023187 None:intergenic
GAATGCAAGAATACATTGTG+AGG 0.660682 5_1:+7024741 None:intergenic
CAAGGTTAGGTGTTGCTACG+GGG 0.666495 5_1:-7026418 Msa0714380:CDS
GTTGACTGCTGAACTTTGCG+TGG 0.669251 5_1:+7023100 None:intergenic
TTTGGTGAAGCAAAGCCAGA+TGG 0.673749 5_1:-7024982 Msa0714380:CDS
GGCTGCTCAACTCTCCGTGG+TGG 0.674172 5_1:+7023139 None:intergenic
GTTGTTGGTGAGACATGGTG+TGG 0.676619 5_1:+7026747 None:intergenic
CGTGGTAGCTACTATCTCTG+TGG 0.702912 5_1:+7023118 None:intergenic
TGTGGCTGCTCAACTCTCCG+TGG 0.704473 5_1:+7023136 None:intergenic
ATCAAAGACAGTTACCACCA+CGG 0.705378 5_1:-7023153 Msa0714380:CDS
TGTTGTGTGTGTAATAACAG+CGG 0.786619 5_1:-7023246 Msa0714380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAAAAATAATAATTGAT+GGG + chr5_1:7023182-7023201 None:intergenic 10.0%
!! AACTAAAAAATAATAATTGA+TGG + chr5_1:7023183-7023202 None:intergenic 10.0%
!!! TTTTATAAAAAAAAATCGAT+AGG + chr5_1:7023255-7023274 None:intergenic 10.0%
!!! TATATTATTATTTTAGTTGT+TGG - chr5_1:7023472-7023491 Msa0714380:intron 10.0%
!!! AAATTATCTTATTATTGTTT+TGG - chr5_1:7024617-7024636 Msa0714380:CDS 10.0%
!!! ATTTGAAATTCAAATTAATA+TGG + chr5_1:7025197-7025216 None:intergenic 10.0%
!!! TTAAATATTTAACTTTTATG+TGG - chr5_1:7025453-7025472 Msa0714380:intron 10.0%
!! GACAAATATATTAATAATAA+AGG + chr5_1:7025955-7025974 None:intergenic 10.0%
!!! TAAATAATTTTTTTTTCTCA+GGG - chr5_1:7027794-7027813 Msa0714380:intron 10.0%
!!! GTTTTGTTTTAAGTATAATT+GGG + chr5_1:7022767-7022786 None:intergenic 15.0%
!!! TGTTTTGTTTTAAGTATAAT+TGG + chr5_1:7022768-7022787 None:intergenic 15.0%
!!! GAATATATTAAGCAAATTTT+TGG - chr5_1:7023110-7023129 Msa0714380:three_prime_UTR 15.0%
!! AAAATAACTCACAATATTAA+CGG - chr5_1:7023272-7023291 Msa0714380:CDS 15.0%
!! GGTATTTAATTAGATTAAAT+CGG + chr5_1:7023521-7023540 None:intergenic 15.0%
!! TGTTAAGATTAAATTTGTAT+AGG + chr5_1:7023542-7023561 None:intergenic 15.0%
!!! TGTTAATTTTCATTTAAAGT+AGG - chr5_1:7024415-7024434 Msa0714380:CDS 15.0%
!!! TTTAGTTTCTTTTTTTTGTT+TGG - chr5_1:7024488-7024507 Msa0714380:CDS 15.0%
!!! GTAAATAATTTTTTTTTCTC+AGG - chr5_1:7027793-7027812 Msa0714380:intron 15.0%
!! AAAAAAAAAAAGAGAAGAAC+CGG + chr5_1:7022957-7022976 None:intergenic 20.0%
!!! TATTAAACGTTAATTTTGTG+AGG + chr5_1:7023216-7023235 None:intergenic 20.0%
!! TTAACGTTTAATACTTTACA+AGG - chr5_1:7023223-7023242 Msa0714380:CDS 20.0%
!! GTCTATTAAATTATGTTTGT+TGG - chr5_1:7023419-7023438 Msa0714380:intron 20.0%
!!! TGTTTCATAGTTTTAAAACT+CGG + chr5_1:7023674-7023693 None:intergenic 20.0%
!!! TAAATTTCTGTTGCTTTAAA+TGG - chr5_1:7024363-7024382 Msa0714380:CDS 20.0%
!!! TCTTATTATTGTTTTGGAAT+TGG - chr5_1:7024623-7024642 Msa0714380:CDS 20.0%
!!! TTTTCTTGATATTATTACAG+TGG - chr5_1:7024647-7024666 Msa0714380:CDS 20.0%
!! TTTCTTGATATTATTACAGT+GGG - chr5_1:7024648-7024667 Msa0714380:CDS 20.0%
!!! ATCTGTACTCTTTTTTTTTT+TGG + chr5_1:7024734-7024753 None:intergenic 20.0%
!!! TGAATTTGAAGTTGAAAAAA+TGG - chr5_1:7026177-7026196 Msa0714380:intron 20.0%
!!! TCTGAAATTGTGTTTATAAA+TGG + chr5_1:7026599-7026618 None:intergenic 20.0%
!! TTGATAAAAATATTAACGAG+GGG + chr5_1:7027070-7027089 None:intergenic 20.0%
!!! GTTGATAAAAATATTAACGA+GGG + chr5_1:7027071-7027090 None:intergenic 20.0%
!! ACAAATAATAAGCATTAGTA+TGG + chr5_1:7027576-7027595 None:intergenic 20.0%
!! CTGTAAAATTTGATATACAA+TGG - chr5_1:7027712-7027731 Msa0714380:intron 20.0%
!! TATACATGCATTATATTTGT+AGG + chr5_1:7027826-7027845 None:intergenic 20.0%
!!! TTTTAAGTATAATTGGGTTC+TGG + chr5_1:7022761-7022780 None:intergenic 25.0%
!!! TTAGGAAGTTGTTTCTTATT+GGG + chr5_1:7023045-7023064 None:intergenic 25.0%
!! TCTAATGAGTATAGCATTTT+TGG - chr5_1:7024017-7024036 Msa0714380:intron 25.0%
! AGAAGATACTTCAAAATAAG+TGG + chr5_1:7024573-7024592 None:intergenic 25.0%
!! TGAAGTATCTTCTTTGATTA+AGG - chr5_1:7024580-7024599 Msa0714380:CDS 25.0%
!!! ATAGTGTTTTTTAGTTGTAC+TGG - chr5_1:7024673-7024692 Msa0714380:CDS 25.0%
! CTTTCTTAGATTCATTTCTT+TGG - chr5_1:7025244-7025263 Msa0714380:intron 25.0%
! CATTATTAAGTCAATTTCCT+AGG - chr5_1:7025678-7025697 Msa0714380:intron 25.0%
! ACTTATATTTGATTCTTCAG+AGG - chr5_1:7026253-7026272 Msa0714380:CDS 25.0%
!!! CATTAGATGTTTTGAATGAA+TGG - chr5_1:7026279-7026298 Msa0714380:CDS 25.0%
! GTTTCAAAGGAACAAATAAT+GGG - chr5_1:7026359-7026378 Msa0714380:CDS 25.0%
!! TATATGATTCCTTTGCATTT+TGG - chr5_1:7026411-7026430 Msa0714380:CDS 25.0%
! GACATATATGAATATGCAAA+TGG + chr5_1:7026489-7026508 None:intergenic 25.0%
! GAAATTGTGTTTATAAATGG+TGG + chr5_1:7026596-7026615 None:intergenic 25.0%
! GTCTCATATTGAATGATATA+AGG + chr5_1:7026622-7026641 None:intergenic 25.0%
! ATTGACATATTCTTACCAAA+GGG - chr5_1:7027011-7027030 Msa0714380:intron 25.0%
! TGATAAAAATATTAACGAGG+GGG + chr5_1:7027069-7027088 None:intergenic 25.0%
!! CGTTGATAAAAATATTAACG+AGG + chr5_1:7027072-7027091 None:intergenic 25.0%
!!! CGTTAATATTTTTATCAACG+TGG - chr5_1:7027072-7027091 Msa0714380:intron 25.0%
!!! AGTTTGATGCTTTGATTTTT+TGG - chr5_1:7027153-7027172 Msa0714380:intron 25.0%
! TAGTATGGTCAATAAGAATA+GGG + chr5_1:7027561-7027580 None:intergenic 25.0%
! TTAGTATGGTCAATAAGAAT+AGG + chr5_1:7027562-7027581 None:intergenic 25.0%
!! TAATAACTTGCAATGATTCA+GGG - chr5_1:7027601-7027620 Msa0714380:intron 25.0%
!!! ACGTTAAGAGTGTTATTTTT+AGG - chr5_1:7027763-7027782 Msa0714380:intron 25.0%
TTACAAAAAATGCCACAGAT+GGG - chr5_1:7023001-7023020 Msa0714380:three_prime_UTR 30.0%
!! GTTAGGAAGTTGTTTCTTAT+TGG + chr5_1:7023046-7023065 None:intergenic 30.0%
TAGATTAAATCGGATTGAAC+CGG + chr5_1:7023511-7023530 None:intergenic 30.0%
CTTATGTGTTGTAAAAAGAG+AGG + chr5_1:7023778-7023797 None:intergenic 30.0%
TTAGAACAACAACAAGAAGA+AGG - chr5_1:7023850-7023869 Msa0714380:intron 30.0%
! TAAGAATTCCACCATTTTCA+TGG - chr5_1:7023962-7023981 Msa0714380:intron 30.0%
CATAGTTTCTTCCATGAAAA+TGG + chr5_1:7023976-7023995 None:intergenic 30.0%
! CATTTTCATGGAAGAAACTA+TGG - chr5_1:7023974-7023993 Msa0714380:intron 30.0%
AAGAAACTATGGTTATTCAG+TGG - chr5_1:7023985-7024004 Msa0714380:intron 30.0%
TCTGATATTCAAGAGGTTAT+AGG - chr5_1:7024261-7024280 Msa0714380:CDS 30.0%
CTGATATTCAAGAGGTTATA+GGG - chr5_1:7024262-7024281 Msa0714380:CDS 30.0%
!! GCTATTAGGATTTTGAGTAA+TGG - chr5_1:7024294-7024313 Msa0714380:CDS 30.0%
! TTGTCATTACTGCTTTAGAT+TGG - chr5_1:7024340-7024359 Msa0714380:CDS 30.0%
! TCTGCAATTATAGCATTTTC+TGG - chr5_1:7024457-7024476 Msa0714380:CDS 30.0%
!!! TAACCGTTTTTAAGTTTGCA+GGG + chr5_1:7024521-7024540 None:intergenic 30.0%
!!! ACTAAGTTTTAGGTTCCATA+TGG - chr5_1:7024797-7024816 Msa0714380:CDS 30.0%
! ATCAAGTTTAGAACCTAAAC+TGG + chr5_1:7024828-7024847 None:intergenic 30.0%
!! GTCTTTAGAGTTTCTTGTTA+TGG - chr5_1:7024871-7024890 Msa0714380:intron 30.0%
!!! TGAACCATATGTTTTGATAG+GGG + chr5_1:7024906-7024925 None:intergenic 30.0%
!!! CTGAACCATATGTTTTGATA+GGG + chr5_1:7024907-7024926 None:intergenic 30.0%
!!! ACTGAACCATATGTTTTGAT+AGG + chr5_1:7024908-7024927 None:intergenic 30.0%
CATATGCACAAATTGAAGTT+AGG + chr5_1:7024960-7024979 None:intergenic 30.0%
AGAACAACTCTACATTCAAA+AGG + chr5_1:7025040-7025059 None:intergenic 30.0%
ACTCGTATATTACTTGATGA+AGG - chr5_1:7025072-7025091 Msa0714380:CDS 30.0%
CTCGTATATTACTTGATGAA+GGG - chr5_1:7025073-7025092 Msa0714380:CDS 30.0%
!! ATCTAAGAAAGCACTCTAAA+AGG + chr5_1:7025235-7025254 None:intergenic 30.0%
CATGGATTCATCAATATTTC+TGG + chr5_1:7025346-7025365 None:intergenic 30.0%
AAAAGCAAGACAATTGATCA+TGG + chr5_1:7025364-7025383 None:intergenic 30.0%
!!! ATTGTCTTGCTTTTTCGTTT+TGG - chr5_1:7025370-7025389 Msa0714380:intron 30.0%
TTTGGCATTTAAGAAGCTAT+TGG - chr5_1:7025388-7025407 Msa0714380:intron 30.0%
AAGAAAGAGGAAAATGAAAC+TGG + chr5_1:7025489-7025508 None:intergenic 30.0%
TTCCTCTTTCTTGAGAATTA+TGG - chr5_1:7025497-7025516 Msa0714380:intron 30.0%
AGCCATTATAGCAATAAGAA+CGG + chr5_1:7025549-7025568 None:intergenic 30.0%
! TTTTGCCTTTGTAGGTATTT+TGG - chr5_1:7025743-7025762 Msa0714380:intron 30.0%
! ATGGTACTGAAATAGCAAAT+AGG - chr5_1:7026000-7026019 Msa0714380:intron 30.0%
ACTGAAATAGCAAATAGGAT+CGG - chr5_1:7026005-7026024 Msa0714380:intron 30.0%
TATTCCCAATCCTGTATATA+TGG - chr5_1:7026075-7026094 Msa0714380:intron 30.0%
ATTCCCAATCCTGTATATAT+GGG - chr5_1:7026076-7026095 Msa0714380:intron 30.0%
TGAAGTTGAAAAAATGGATG+AGG - chr5_1:7026183-7026202 Msa0714380:intron 30.0%
GAAGTTGAAAAAATGGATGA+GGG - chr5_1:7026184-7026203 Msa0714380:intron 30.0%
ATAAGTGCAACTATCATAGT+CGG + chr5_1:7026239-7026258 None:intergenic 30.0%
! TTTGAAACCAAACAAAGCAA+GGG + chr5_1:7026347-7026366 None:intergenic 30.0%
GGTTTCAAAGGAACAAATAA+TGG - chr5_1:7026358-7026377 Msa0714380:CDS 30.0%
GTTATCCATTGTCAGTTTAT+TGG - chr5_1:7026451-7026470 Msa0714380:CDS 30.0%
TCCACTACCATGTTAAAATT+TGG - chr5_1:7026739-7026758 Msa0714380:CDS 30.0%
CCACTACCATGTTAAAATTT+GGG - chr5_1:7026740-7026759 Msa0714380:CDS 30.0%
! ACCATGTTAAAATTTGGGTT+CGG - chr5_1:7026745-7026764 Msa0714380:exon 30.0%
AGATGGAATAGGTCTATATT+GGG + chr5_1:7026885-7026904 None:intergenic 30.0%
AAGATGGAATAGGTCTATAT+TGG + chr5_1:7026886-7026905 None:intergenic 30.0%
GATAATTTCTCTTACCTAAG+TGG - chr5_1:7026974-7026993 Msa0714380:intron 30.0%
GATTGACATATTCTTACCAA+AGG - chr5_1:7027010-7027029 Msa0714380:intron 30.0%
!! ATTTTTATCAACGTGGATTG+AGG - chr5_1:7027079-7027098 Msa0714380:intron 30.0%
TGGTCTGTATTGAAATCATA+AGG + chr5_1:7027209-7027228 None:intergenic 30.0%
ATTCCTCAAAATCATGAAGT+AGG - chr5_1:7027495-7027514 Msa0714380:intron 30.0%
! CTAATAACTTGCAATGATTC+AGG - chr5_1:7027600-7027619 Msa0714380:intron 30.0%
! AATAACTTGCAATGATTCAG+GGG - chr5_1:7027602-7027621 Msa0714380:intron 30.0%
GTACAGACAACCAATAAATA+AGG + chr5_1:7027639-7027658 None:intergenic 30.0%
CTTAACGTCATAGACTTAAA+AGG + chr5_1:7027751-7027770 None:intergenic 30.0%
!!! CAGAGCATAGTTTTGAAACT+CGG - chr5_1:7022786-7022805 Msa0714380:three_prime_UTR 35.0%
GTTACAAAAAATGCCACAGA+TGG - chr5_1:7023000-7023019 Msa0714380:three_prime_UTR 35.0%
!! GAAGTTGTTTCTTATTGGGT+GGG + chr5_1:7023041-7023060 None:intergenic 35.0%
AAAATGAACAAGCACTTCAG+TGG + chr5_1:7023068-7023087 None:intergenic 35.0%
!!! CATAGTTTTAAAACTCGGCT+CGG + chr5_1:7023669-7023688 None:intergenic 35.0%
!! TCTTGTTGTTGTTCTAACAG+AGG + chr5_1:7023847-7023866 None:intergenic 35.0%
! CTTTTCAGATGAATCGTAAG+CGG + chr5_1:7023884-7023903 None:intergenic 35.0%
AGTTTCTTCCATGAAAATGG+TGG + chr5_1:7023973-7023992 None:intergenic 35.0%
GCTATACTCATTAGAAAACC+TGG + chr5_1:7024012-7024031 None:intergenic 35.0%
!! AGTATAGCATTTTTGGATCC+TGG - chr5_1:7024024-7024043 Msa0714380:intron 35.0%
!! ATTTTTGGATCCTGGAAACT+TGG - chr5_1:7024032-7024051 Msa0714380:intron 35.0%
TAGAGATGAGTATCCTACTT+GGG - chr5_1:7024194-7024213 Msa0714380:CDS 35.0%
! ATGACTGAAGTTGCTTTGAT+TGG - chr5_1:7024237-7024256 Msa0714380:CDS 35.0%
!! GATTGGTTCTGATATTCAAG+AGG - chr5_1:7024254-7024273 Msa0714380:CDS 35.0%
TGACCCTGCAAACTTAAAAA+CGG - chr5_1:7024515-7024534 Msa0714380:CDS 35.0%
!!! GTAACCGTTTTTAAGTTTGC+AGG + chr5_1:7024522-7024541 None:intergenic 35.0%
! GTTTAGAACCTAAACTGGTA+GGG + chr5_1:7024823-7024842 None:intergenic 35.0%
! AGTTTAGAACCTAAACTGGT+AGG + chr5_1:7024824-7024843 None:intergenic 35.0%
!! GGTTCTAAACTTGATGTAAG+AGG - chr5_1:7024833-7024852 Msa0714380:intron 35.0%
TCTAAACTTGATGTAAGAGG+AGG - chr5_1:7024836-7024855 Msa0714380:intron 35.0%
CTAAACTTGATGTAAGAGGA+GGG - chr5_1:7024837-7024856 Msa0714380:intron 35.0%
ACATCCCCTATCAAAACATA+TGG - chr5_1:7024899-7024918 Msa0714380:intron 35.0%
TGAGAAGAGAAGACAACAAA+TGG - chr5_1:7024978-7024997 Msa0714380:CDS 35.0%
! CTAAAAGGTGTGTTTCTTCA+TGG + chr5_1:7025220-7025239 None:intergenic 35.0%
TAGATGTCATGTAAACCTGT+TGG - chr5_1:7025279-7025298 Msa0714380:intron 35.0%
AGATGTCATGTAAACCTGTT+GGG - chr5_1:7025280-7025299 Msa0714380:intron 35.0%
AGGAAAATGAAACTGGAACA+AGG + chr5_1:7025482-7025501 None:intergenic 35.0%
CACCATAATTCTCAAGAAAG+AGG + chr5_1:7025502-7025521 None:intergenic 35.0%
TTCTTGAGAATTATGGTGTG+AGG - chr5_1:7025504-7025523 Msa0714380:intron 35.0%
GAATTATGGTGTGAGGAAAT+TGG - chr5_1:7025511-7025530 Msa0714380:intron 35.0%
TGCCGTTCTTATTGCTATAA+TGG - chr5_1:7025544-7025563 Msa0714380:intron 35.0%
! TGCTTTCATTTTGCCTTTGT+AGG - chr5_1:7025735-7025754 Msa0714380:intron 35.0%
AGGAACCAAAATACCTACAA+AGG + chr5_1:7025751-7025770 None:intergenic 35.0%
!! ATAGTTCTGGAGCTAAGTTT+AGG + chr5_1:7025771-7025790 None:intergenic 35.0%
!! AACAGCTTGTTGTATAGTTC+TGG + chr5_1:7025784-7025803 None:intergenic 35.0%
AGAACTATACAACAAGCTGT+TGG - chr5_1:7025783-7025802 Msa0714380:intron 35.0%
GAATGCAAGAATACATTGTG+AGG + chr5_1:7025831-7025850 None:intergenic 35.0%
TTCCCAATCCTGTATATATG+GGG - chr5_1:7026077-7026096 Msa0714380:intron 35.0%
TACCCCATATATACAGGATT+GGG + chr5_1:7026082-7026101 None:intergenic 35.0%
ATACCCCATATATACAGGAT+TGG + chr5_1:7026083-7026102 None:intergenic 35.0%
ATCCTGTATATATGGGGTAT+TGG - chr5_1:7026083-7026102 Msa0714380:intron 35.0%
! TCCTGTATATATGGGGTATT+GGG - chr5_1:7026084-7026103 Msa0714380:intron 35.0%
ACTATTACTGGTACATATGC+TGG - chr5_1:7026131-7026150 Msa0714380:intron 35.0%
ATATGCTGGACAATTCATCA+TGG - chr5_1:7026145-7026164 Msa0714380:intron 35.0%
TATGCTGGACAATTCATCAT+GGG - chr5_1:7026146-7026165 Msa0714380:intron 35.0%
TAAGTGCAACTATCATAGTC+GGG + chr5_1:7026238-7026257 None:intergenic 35.0%
! ATTGATTCCCTTGCTTTGTT+TGG - chr5_1:7026337-7026356 Msa0714380:CDS 35.0%
!! CTTTGAAACCAAACAAAGCA+AGG + chr5_1:7026348-7026367 None:intergenic 35.0%
!! CTTGCTTTGTTTGGTTTCAA+AGG - chr5_1:7026346-7026365 Msa0714380:CDS 35.0%
!! ATAATGGGCACTTTCAAGAT+TGG - chr5_1:7026374-7026393 Msa0714380:CDS 35.0%
CAAAGGAATCATATACCTTG+AGG + chr5_1:7026406-7026425 None:intergenic 35.0%
CATGTCCAATAAACTGACAA+TGG + chr5_1:7026459-7026478 None:intergenic 35.0%
ATGTAAAGAGTCGTAACGTT+TGG - chr5_1:7026520-7026539 Msa0714380:CDS 35.0%
TGTAAAGAGTCGTAACGTTT+GGG - chr5_1:7026521-7026540 Msa0714380:CDS 35.0%
!!! CTTACAAGCCACTTTTGTAA+GGG + chr5_1:7026562-7026581 None:intergenic 35.0%
!! CCCAAATTTTAACATGGTAG+TGG + chr5_1:7026743-7026762 None:intergenic 35.0%
!! GGCCTTATTTAATCAAACGT+GGG - chr5_1:7026829-7026848 Msa0714380:five_prime_UTR 35.0%
GTCCCACGTTTGATTAAATA+AGG + chr5_1:7026834-7026853 None:intergenic 35.0%
AAAATATTAACGAGGGGGTA+GGG + chr5_1:7027064-7027083 None:intergenic 35.0%
AAAAATATTAACGAGGGGGT+AGG + chr5_1:7027065-7027084 None:intergenic 35.0%
TTTCAATACAGACCATTTCC+TGG - chr5_1:7027214-7027233 Msa0714380:intron 35.0%
! GATAAATGGCTATCTTTTGC+TGG - chr5_1:7027260-7027279 Msa0714380:intron 35.0%
TGTTGTGTGTGTAATAACAG+CGG - chr5_1:7027323-7027342 Msa0714380:intron 35.0%
! TGTCCTACTTCATGATTTTG+AGG + chr5_1:7027501-7027520 None:intergenic 35.0%
! AGTGGTGGTACCTTATTTAT+TGG - chr5_1:7027626-7027645 Msa0714380:intron 35.0%
TATTGGACGTGAAAAGAAAC+AGG + chr5_1:7027865-7027884 None:intergenic 35.0%
! CGATTTTTACCGAGTTTGAC+CGG + chr5_1:7022908-7022927 None:intergenic 40.0%
CGGTCAAACTCGGTAAAAAT+CGG - chr5_1:7022906-7022925 Msa0714380:three_prime_UTR 40.0%
!! GGAAGTTGTTTCTTATTGGG+TGG + chr5_1:7023042-7023061 None:intergenic 40.0%
!! GATGACTCGGTTAGATAACT+CGG + chr5_1:7023565-7023584 None:intergenic 40.0%
GTTGTTCTAACAGAGGTTGT+TGG + chr5_1:7023840-7023859 None:intergenic 40.0%
CGCTTACGATTCATCTGAAA+AGG - chr5_1:7023882-7023901 Msa0714380:intron 40.0%
TCTGAAAAGGTTGTCGTTGT+TGG - chr5_1:7023895-7023914 Msa0714380:intron 40.0%
TTGGAAGGAGATCTTCAATC+TGG - chr5_1:7024051-7024070 Msa0714380:intron 40.0%
TTCAATCTGGTGCAATTGCT+GGG - chr5_1:7024064-7024083 Msa0714380:intron 40.0%
GCTGTTATGGCTTCTTATGT+GGG - chr5_1:7024092-7024111 Msa0714380:intron 40.0%
! TGATTCAGCTTTTGTCAGCA+AGG - chr5_1:7024133-7024152 Msa0714380:intron 40.0%
GTAGAGATGAGTATCCTACT+TGG - chr5_1:7024193-7024212 Msa0714380:CDS 40.0%
!! TAGGGAGTGCTATTGCTATT+AGG - chr5_1:7024280-7024299 Msa0714380:CDS 40.0%
!! TAATGGCCTTGTTCCTCTTT+GGG - chr5_1:7024311-7024330 Msa0714380:CDS 40.0%
AGCCTATGATGTCAGCTTAT+TGG - chr5_1:7024546-7024565 Msa0714380:CDS 40.0%
GCCTATGATGTCAGCTTATT+GGG - chr5_1:7024547-7024566 Msa0714380:CDS 40.0%
! GTGTCGAGACACTAAGTTTT+AGG - chr5_1:7024787-7024806 Msa0714380:CDS 40.0%
TCATGTAAACCTGTTGGGAT+TGG - chr5_1:7025285-7025304 Msa0714380:intron 40.0%
CATGTAAACCTGTTGGGATT+GGG - chr5_1:7025286-7025305 Msa0714380:intron 40.0%
TAATGGCTCTCTCATTTGCA+TGG - chr5_1:7025561-7025580 Msa0714380:intron 40.0%
CTCTCATTTGCATGGATGTT+TGG - chr5_1:7025569-7025588 Msa0714380:intron 40.0%
ACAAGAACATCAACACCATC+TGG + chr5_1:7025605-7025624 None:intergenic 40.0%
!! GATGGTGTTGATGTTCTTGT+TGG - chr5_1:7025605-7025624 Msa0714380:intron 40.0%
ATTCTGCTCTTGTTCAATCC+AGG - chr5_1:7025847-7025866 Msa0714380:intron 40.0%
AATTGAGAGCTTCTTGAACG+CGG + chr5_1:7025896-7025915 None:intergenic 40.0%
! TGTCACAACTGTGTTTGCTA+AGG - chr5_1:7025971-7025990 Msa0714380:intron 40.0%
! GTCACAACTGTGTTTGCTAA+GGG - chr5_1:7025972-7025991 Msa0714380:intron 40.0%
!! GTGTTTGCTAAGGGCTTTTA+TGG - chr5_1:7025981-7026000 Msa0714380:intron 40.0%
ACCCAATACCCCATATATAC+AGG + chr5_1:7026088-7026107 None:intergenic 40.0%
GCAAGGGAATCAATGCAAAA+GGG + chr5_1:7026331-7026350 None:intergenic 40.0%
AGCAAGGGAATCAATGCAAA+AGG + chr5_1:7026332-7026351 None:intergenic 40.0%
GCAGTTCAACCAAAATGCAA+AGG + chr5_1:7026423-7026442 None:intergenic 40.0%
! ACTTTTGTAAGGGTTGAGCT+AGG + chr5_1:7026552-7026571 None:intergenic 40.0%
TAGCTCAACCCTTACAAAAG+TGG - chr5_1:7026551-7026570 Msa0714380:CDS 40.0%
!!! CCTTACAAGCCACTTTTGTA+AGG + chr5_1:7026563-7026582 None:intergenic 40.0%
! CCTTACAAAAGTGGCTTGTA+AGG - chr5_1:7026560-7026579 Msa0714380:CDS 40.0%
TTACCCGAATAGCTTGATAG+CGG - chr5_1:7026684-7026703 Msa0714380:CDS 40.0%
ATCCAAGATCCATTGGAGAT+TGG + chr5_1:7026715-7026734 None:intergenic 40.0%
GGAATCTATCCAAGATCCAT+TGG + chr5_1:7026722-7026741 None:intergenic 40.0%
!! GCCGAACCCAAATTTTAACA+TGG + chr5_1:7026749-7026768 None:intergenic 40.0%
AGTTTGGTAGGGGTTGAATT+GGG + chr5_1:7026771-7026790 None:intergenic 40.0%
AATGTCCACCACTCACATTT+CGG - chr5_1:7026807-7026826 Msa0714380:five_prime_UTR 40.0%
!! GGGCCTTATTTAATCAAACG+TGG - chr5_1:7026828-7026847 Msa0714380:five_prime_UTR 40.0%
CTTGTTGAACTTAGCCACTT+AGG + chr5_1:7026991-7027010 None:intergenic 40.0%
!! TACCAAAGGGACTAGTTTCA+AGG - chr5_1:7027024-7027043 Msa0714380:intron 40.0%
CATAAGGATATCATGAGCTG+TGG + chr5_1:7027193-7027212 None:intergenic 40.0%
! GCTCTGGTGATAGTGATAAA+TGG - chr5_1:7027246-7027265 Msa0714380:intron 40.0%
!!! TTCTTTTCCTCTGAAGTGAG+TGG - chr5_1:7027285-7027304 Msa0714380:intron 40.0%
! ACGTAACGGAGCTTGAAATA+AGG + chr5_1:7027371-7027390 None:intergenic 40.0%
TTGCCAAGGTGAAAACGTAA+CGG + chr5_1:7027385-7027404 None:intergenic 40.0%
GATCGAGTTAATCTTTGCCA+AGG + chr5_1:7027399-7027418 None:intergenic 40.0%
ATCAAAGACAGTTACCACCA+CGG - chr5_1:7027416-7027435 Msa0714380:intron 40.0%
GCAGTAACATACCAAGTTAC+TGG + chr5_1:7027688-7027707 None:intergenic 40.0%
!!! TTTTGAAACTCGGCTCGAAC+CGG - chr5_1:7022796-7022815 Msa0714380:three_prime_UTR 45.0%
CTCGGTAAAAATCGGTGACT+CGG - chr5_1:7022914-7022933 Msa0714380:three_prime_UTR 45.0%
! AACCGGTTCAACCCATAACT+CGG + chr5_1:7022940-7022959 None:intergenic 45.0%
ACAAGTTCAACTCCCATCTG+TGG + chr5_1:7023016-7023035 None:intergenic 45.0%
GAACAAGCACTTCAGTGGTT+AGG + chr5_1:7023063-7023082 None:intergenic 45.0%
TGTTGGAGTAATCGAGTCAC+CGG - chr5_1:7023489-7023508 Msa0714380:intron 45.0%
CATGACAGAATCGGATGACT+CGG + chr5_1:7023578-7023597 None:intergenic 45.0%
AGTCATCCGATTCTGTCATG+CGG - chr5_1:7023578-7023597 Msa0714380:intron 45.0%
GTTGAACCGCATGACAGAAT+CGG + chr5_1:7023587-7023606 None:intergenic 45.0%
TGAGTCGATGGTTGAACCAT+CGG + chr5_1:7023617-7023636 None:intergenic 45.0%
AAACTAGTCACTGTCGAGTG+TGG + chr5_1:7023744-7023763 None:intergenic 45.0%
GTGGATAATGATTCGCGTTG+CGG + chr5_1:7023806-7023825 None:intergenic 45.0%
TTCGTAGGCTTCTTCTTCGT+CGG + chr5_1:7023923-7023942 None:intergenic 45.0%
CTATGGTTATTCAGTGGACC+AGG - chr5_1:7023991-7024010 Msa0714380:intron 45.0%
TTGGATCCTGGAAACTTGGA+AGG - chr5_1:7024036-7024055 Msa0714380:intron 45.0%
AGATCTCCTTCCAAGTTTCC+AGG + chr5_1:7024045-7024064 None:intergenic 45.0%
CTTCAATCTGGTGCAATTGC+TGG - chr5_1:7024063-7024082 Msa0714380:intron 45.0%
TTGCTGGGTATTCGCTGTTA+TGG - chr5_1:7024079-7024098 Msa0714380:intron 45.0%
CGCTGTTATGGCTTCTTATG+TGG - chr5_1:7024091-7024110 Msa0714380:intron 45.0%
! ATGGCTTCTTATGTGGGCTA+CGG - chr5_1:7024098-7024117 Msa0714380:intron 45.0%
! CAGCTTTTGTCAGCAAGGTT+AGG - chr5_1:7024138-7024157 Msa0714380:intron 45.0%
!! AGCAAGGTTAGGTGTTGCTA+CGG - chr5_1:7024149-7024168 Msa0714380:intron 45.0%
ATGAGTATCCTACTTGGGCA+AGG - chr5_1:7024199-7024218 Msa0714380:CDS 45.0%
AGAACAATCCTTGCCCAAGT+AGG + chr5_1:7024210-7024229 None:intergenic 45.0%
CTTGGGCAAGGATTGTTCTT+TGG - chr5_1:7024211-7024230 Msa0714380:CDS 45.0%
!! GTAATGGCCTTGTTCCTCTT+TGG - chr5_1:7024310-7024329 Msa0714380:CDS 45.0%
GCCCAATAAGCTGACATCAT+AGG + chr5_1:7024551-7024570 None:intergenic 45.0%
GTATTCTTCCCAATCCCAAC+AGG + chr5_1:7025297-7025316 None:intergenic 45.0%
TTTGGTGAAGCAAAGCCAGA+TGG - chr5_1:7025587-7025606 Msa0714380:intron 45.0%
TATGAAGCATGAGCACACCT+AGG + chr5_1:7025698-7025717 None:intergenic 45.0%
CAACAAGCTGTTGGAGTTGT+TGG - chr5_1:7025792-7025811 Msa0714380:intron 45.0%
! CAGGTTGACCCCAAAAAGAA+AGG - chr5_1:7025870-7025889 Msa0714380:intron 45.0%
! TGAACGCGGCCTTTCTTTTT+GGG + chr5_1:7025882-7025901 None:intergenic 45.0%
! TTGAACGCGGCCTTTCTTTT+TGG + chr5_1:7025883-7025902 None:intergenic 45.0%
AAAGGAGACAACTAGCGCAA+TGG + chr5_1:7025937-7025956 None:intergenic 45.0%
! AGGATCGGTCTTGTAAATGC+AGG - chr5_1:7026020-7026039 Msa0714380:intron 45.0%
! GGATCGGTCTTGTAAATGCA+GGG - chr5_1:7026021-7026040 Msa0714380:intron 45.0%
CAGTACCTTCAGGAGAAGTA+TGG - chr5_1:7026044-7026063 Msa0714380:intron 45.0%
! TACCTTCAGGAGAAGTATGG+AGG - chr5_1:7026047-7026066 Msa0714380:intron 45.0%
GGTCAGAGTAGCACTATTAC+TGG - chr5_1:7026119-7026138 Msa0714380:intron 45.0%
ACACCTCTCATGCTTAGTGT+TGG - chr5_1:7026649-7026668 Msa0714380:CDS 45.0%
TGTCCAACACTAAGCATGAG+AGG + chr5_1:7026655-7026674 None:intergenic 45.0%
! CATGCTTAGTGTTGGACATC+TGG - chr5_1:7026657-7026676 Msa0714380:CDS 45.0%
! TACCCGAATAGCTTGATAGC+GGG - chr5_1:7026685-7026704 Msa0714380:CDS 45.0%
GTCCAATCTCCAATGGATCT+TGG - chr5_1:7026710-7026729 Msa0714380:CDS 45.0%
CAGTTTGGTAGGGGTTGAAT+TGG + chr5_1:7026772-7026791 None:intergenic 45.0%
CAATTCAACCCCTACCAAAC+TGG - chr5_1:7026770-7026789 Msa0714380:five_prime_UTR 45.0%
CTTACAAGCCAGTTTGGTAG+GGG + chr5_1:7026781-7026800 None:intergenic 45.0%
CCTTACAAGCCAGTTTGGTA+GGG + chr5_1:7026782-7026801 None:intergenic 45.0%
ACCTTACAAGCCAGTTTGGT+AGG + chr5_1:7026783-7026802 None:intergenic 45.0%
ATGTCCACCACTCACATTTC+GGG - chr5_1:7026808-7026827 Msa0714380:five_prime_UTR 45.0%
AATAAGGCCCGAAATGTGAG+TGG + chr5_1:7026818-7026837 None:intergenic 45.0%
CAAACGTGGGACTCTTAACT+AGG - chr5_1:7026842-7026861 Msa0714380:five_prime_UTR 45.0%
CCTGAGAAGCAAGATGGAAT+AGG + chr5_1:7026896-7026915 None:intergenic 45.0%
CCTATTCCATCTTGCTTCTC+AGG - chr5_1:7026893-7026912 Msa0714380:intron 45.0%
ATCAAGCCTGAGAAGCAAGA+TGG + chr5_1:7026902-7026921 None:intergenic 45.0%
GGGGTAGGGAACATAAAAAG+AGG + chr5_1:7027050-7027069 None:intergenic 45.0%
CAGTGTAGATGCCAGTAACT+TGG - chr5_1:7027674-7027693 Msa0714380:intron 45.0%
!!! TTATAATTATATTTTTGTTA+GGG + chr5_1:7023331-7023350 None:intergenic 5.0%
!!! TTTATAATTATATTTTTGTT+AGG + chr5_1:7023332-7023351 None:intergenic 5.0%
!! AAATTTAATCATTATTAATT+AGG - chr5_1:7027114-7027133 Msa0714380:intron 5.0%
!! GACTGGTTCGAGCATACCTT+CGG - chr5_1:7022854-7022873 Msa0714380:three_prime_UTR 50.0%
GTTCGAGCATACCTTCGGAT+CGG - chr5_1:7022859-7022878 Msa0714380:three_prime_UTR 50.0%
TGGTTGAACCATCGGGTCAT+TGG + chr5_1:7023609-7023628 None:intergenic 50.0%
GAGTCGATGGTTGAACCATC+GGG + chr5_1:7023616-7023635 None:intergenic 50.0%
GTACTGAGTCACTGAGTCGA+TGG + chr5_1:7023629-7023648 None:intergenic 50.0%
! GTTGTTGGTGAGACATGGTG+TGG + chr5_1:7023825-7023844 None:intergenic 50.0%
! CAGAGGTTGTTGGTGAGACA+TGG + chr5_1:7023830-7023849 None:intergenic 50.0%
! TCTTATGTGGGCTACGGCTA+TGG - chr5_1:7024104-7024123 Msa0714380:intron 50.0%
! CTTATGTGGGCTACGGCTAT+GGG - chr5_1:7024105-7024124 Msa0714380:intron 50.0%
! TTATGTGGGCTACGGCTATG+GGG - chr5_1:7024106-7024125 Msa0714380:intron 50.0%
!! GCAAGGTTAGGTGTTGCTAC+GGG - chr5_1:7024150-7024169 Msa0714380:intron 50.0%
!! CAAGGTTAGGTGTTGCTACG+GGG - chr5_1:7024151-7024170 Msa0714380:intron 50.0%
TGTTGCTACGGGGAGACATT+TGG - chr5_1:7024161-7024180 Msa0714380:intron 50.0%
ATGACAACACCAGCCCAAAG+AGG + chr5_1:7024327-7024346 None:intergenic 50.0%
CCTAAACTGGTAGGGCCATA+TGG + chr5_1:7024815-7024834 None:intergenic 50.0%
CCATATGGCCCTACCAGTTT+AGG - chr5_1:7024812-7024831 Msa0714380:CDS 50.0%
TGCTCTTGTTCAATCCAGGC+AGG - chr5_1:7025851-7025870 Msa0714380:intron 50.0%
! GAACGCGGCCTTTCTTTTTG+GGG + chr5_1:7025881-7025900 None:intergenic 50.0%
!! TAGCGCAATGGTGGACTCTA+TGG + chr5_1:7025925-7025944 None:intergenic 50.0%
AAATGCAGGGCAGTACCTTC+AGG - chr5_1:7026034-7026053 Msa0714380:intron 50.0%
! CTTCAGGAGAAGTATGGAGG+CGG - chr5_1:7026050-7026069 Msa0714380:intron 50.0%
! GGTATTGGGTTACTAGCAGC+TGG - chr5_1:7026098-7026117 Msa0714380:intron 50.0%
GCTGGACAATTCATCATGGG+TGG - chr5_1:7026149-7026168 Msa0714380:intron 50.0%
!! GGATGAGGGCGTTGATTACT+CGG - chr5_1:7026198-7026217 Msa0714380:intron 50.0%
!! CAAGATTGGCTCTGTCCTCA+AGG - chr5_1:7026388-7026407 Msa0714380:CDS 50.0%
CACCCGCTATCAAGCTATTC+GGG + chr5_1:7026690-7026709 None:intergenic 50.0%
CCACCCGCTATCAAGCTATT+CGG + chr5_1:7026691-7026710 None:intergenic 50.0%
!! CCCTACCAAACTGGCTTGTA+AGG - chr5_1:7026779-7026798 Msa0714380:five_prime_UTR 50.0%
CCTCACCTTACAAGCCAGTT+TGG + chr5_1:7026787-7026806 None:intergenic 50.0%
!! CCAAACTGGCTTGTAAGGTG+AGG - chr5_1:7026784-7026803 Msa0714380:five_prime_UTR 50.0%
GGCCTTGAAACTAGTCCCTT+TGG + chr5_1:7027029-7027048 None:intergenic 50.0%
! ACAGACCATTTCCTGGCTTG+TGG - chr5_1:7027221-7027240 Msa0714380:intron 50.0%
! GCTCCGTTACGTTTTCACCT+TGG - chr5_1:7027379-7027398 Msa0714380:intron 50.0%
CGTGGTAGCTACTATCTCTG+TGG + chr5_1:7027454-7027473 None:intergenic 50.0%
GTTGACTGCTGAACTTTGCG+TGG + chr5_1:7027472-7027491 None:intergenic 50.0%
TTGCAATGATTCAGGGGCAG+TGG - chr5_1:7027608-7027627 Msa0714380:intron 50.0%
! GGCCGAGTTATGGGTTGAAC+CGG - chr5_1:7022935-7022954 Msa0714380:three_prime_UTR 55.0%
CGGTTCAACCAATGACCCGA+TGG - chr5_1:7023598-7023617 Msa0714380:intron 55.0%
AGAAGCCTACGAAGCTGACG+TGG - chr5_1:7023930-7023949 Msa0714380:intron 55.0%
AGAGTCCACGTCAGCTTCGT+AGG + chr5_1:7023938-7023957 None:intergenic 55.0%
TACGAAGCTGACGTGGACTC+TGG - chr5_1:7023937-7023956 Msa0714380:intron 55.0%
CACCAGCCCAAAGAGGAACA+AGG + chr5_1:7024320-7024339 None:intergenic 55.0%
!!! CTTTTTGGGGTCAACCTGCC+TGG + chr5_1:7025868-7025887 None:intergenic 55.0%
GGAGACAACTAGCGCAATGG+TGG + chr5_1:7025934-7025953 None:intergenic 55.0%
CGCCTCCATACTTCTCCTGA+AGG + chr5_1:7026052-7026071 None:intergenic 55.0%
!! CCGAATAGCTTGATAGCGGG+TGG - chr5_1:7026688-7026707 Msa0714380:CDS 55.0%
AAGGCCCGAAATGTGAGTGG+TGG + chr5_1:7026815-7026834 None:intergenic 55.0%
AGCAGCCACAAGCCAGGAAA+TGG + chr5_1:7027229-7027248 None:intergenic 55.0%
CACTGCTCCACTCACTTCAG+AGG + chr5_1:7027295-7027314 None:intergenic 55.0%
CAATGATTCAGGGGCAGTGG+TGG - chr5_1:7027611-7027630 Msa0714380:intron 55.0%
GCTCGAACCAGTCTACCCAC+CGG + chr5_1:7022847-7022866 None:intergenic 60.0%
CAACTGCATGGCCGATCCGA+AGG + chr5_1:7022873-7022892 None:intergenic 60.0%
CTTCGGATCGGCCATGCAGT+TGG - chr5_1:7022871-7022890 Msa0714380:three_prime_UTR 60.0%
GATCGGCCATGCAGTTGGCT+CGG - chr5_1:7022876-7022895 Msa0714380:three_prime_UTR 60.0%
TTCTCGCCGAGCCAACTGCA+TGG + chr5_1:7022885-7022904 None:intergenic 60.0%
CGGCGAGAACCGGTCAAACT+CGG - chr5_1:7022896-7022915 Msa0714380:three_prime_UTR 60.0%
! TCGGTGACTCGGCCGAGTTA+TGG - chr5_1:7022925-7022944 Msa0714380:three_prime_UTR 60.0%
! CGGTGACTCGGCCGAGTTAT+GGG - chr5_1:7022926-7022945 Msa0714380:three_prime_UTR 60.0%
!! ACTCGGCTCGGTCATCGACT+CGG + chr5_1:7023657-7023676 None:intergenic 60.0%
!! GGCCTTGTTCCTCTTTGGGC+TGG - chr5_1:7024315-7024334 Msa0714380:CDS 60.0%
GCGGGTGGTCCAATCTCCAA+TGG - chr5_1:7026703-7026722 Msa0714380:CDS 60.0%
! TTCCTGGCTTGTGGCTGCTC+TGG - chr5_1:7027230-7027249 Msa0714380:intron 60.0%
TGTGGCTGCTCAACTCTCCG+TGG + chr5_1:7027436-7027455 None:intergenic 60.0%
! GAAACTCGGCTCGAACCGGC+CGG - chr5_1:7022800-7022819 Msa0714380:three_prime_UTR 65.0%
!! CCAGTCTACCCACCGGTTCC+CGG + chr5_1:7022840-7022859 None:intergenic 65.0%
!! GCAGTTGGCTCGGCGAGAAC+CGG - chr5_1:7022886-7022905 Msa0714380:three_prime_UTR 65.0%
!! CTCGGTCATCGACTCGGCAG+AGG + chr5_1:7023651-7023670 None:intergenic 65.0%
CACCAGAGCAGCCACAAGCC+AGG + chr5_1:7027235-7027254 None:intergenic 65.0%
GGCTGCTCAACTCTCCGTGG+TGG + chr5_1:7027433-7027452 None:intergenic 65.0%
CTCGAACCGGCCGGTTGGAC+CGG - chr5_1:7022809-7022828 Msa0714380:three_prime_UTR 70.0%
GTTCGACCGGTCCAACCGGC+CGG + chr5_1:7022818-7022837 None:intergenic 70.0%
GCCGGTTGGACCGGTCGAAC+CGG - chr5_1:7022818-7022837 Msa0714380:three_prime_UTR 70.0%
! CCCGGTTCGACCGGTCCAAC+CGG + chr5_1:7022822-7022841 None:intergenic 70.0%
CCGGTTGGACCGGTCGAACC+GGG - chr5_1:7022819-7022838 Msa0714380:three_prime_UTR 70.0%
GGACCGGTCGAACCGGGAAC+CGG - chr5_1:7022825-7022844 Msa0714380:three_prime_UTR 70.0%
!! CCACCGGTTCCCGGTTCGAC+CGG + chr5_1:7022831-7022850 None:intergenic 70.0%
CGGTCGAACCGGGAACCGGT+GGG - chr5_1:7022829-7022848 Msa0714380:three_prime_UTR 70.0%
CCGGGAACCGGTGGGTAGAC+TGG - chr5_1:7022837-7022856 Msa0714380:three_prime_UTR 70.0%
! CTCGGCTCGAACCGGCCGGT+TGG - chr5_1:7022804-7022823 Msa0714380:three_prime_UTR 75.0%
CCGGTCGAACCGGGAACCGG+TGG - chr5_1:7022828-7022847 Msa0714380:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 7022703 7027888 7022703 ID=Msa0714380;Name=Msa0714380
chr5_1 mRNA 7022703 7027888 7022703 ID=Msa0714380-mRNA-1;Parent=Msa0714380;Name=Msa0714380-mRNA-1;_AED=0.02;_eAED=0.02;_QI=220|1|1|1|0.75|0.6|5|442|514
chr5_1 exon 7022703 7023366 7022703 ID=Msa0714380-mRNA-1:exon:2952;Parent=Msa0714380-mRNA-1
chr5_1 exon 7024182 7024834 7024182 ID=Msa0714380-mRNA-1:exon:2951;Parent=Msa0714380-mRNA-1
chr5_1 exon 7024965 7025101 7024965 ID=Msa0714380-mRNA-1:exon:2950;Parent=Msa0714380-mRNA-1
chr5_1 exon 7026230 7026894 7026230 ID=Msa0714380-mRNA-1:exon:2949;Parent=Msa0714380-mRNA-1
chr5_1 exon 7027801 7027888 7027801 ID=Msa0714380-mRNA-1:exon:2948;Parent=Msa0714380-mRNA-1
chr5_1 five_prime_UTR 7027801 7027888 7027801 ID=Msa0714380-mRNA-1:five_prime_utr;Parent=Msa0714380-mRNA-1
chr5_1 five_prime_UTR 7026763 7026894 7026763 ID=Msa0714380-mRNA-1:five_prime_utr;Parent=Msa0714380-mRNA-1
chr5_1 CDS 7026230 7026762 7026230 ID=Msa0714380-mRNA-1:cds;Parent=Msa0714380-mRNA-1
chr5_1 CDS 7024965 7025101 7024965 ID=Msa0714380-mRNA-1:cds;Parent=Msa0714380-mRNA-1
chr5_1 CDS 7024182 7024834 7024182 ID=Msa0714380-mRNA-1:cds;Parent=Msa0714380-mRNA-1
chr5_1 CDS 7023145 7023366 7023145 ID=Msa0714380-mRNA-1:cds;Parent=Msa0714380-mRNA-1
chr5_1 three_prime_UTR 7022703 7023144 7022703 ID=Msa0714380-mRNA-1:three_prime_utr;Parent=Msa0714380-mRNA-1
Gene Sequence

>Msa0714380

ATGTCTCACCAACAACCTCTGTTAGAACAACAACAAGAAGAAGGAGAAGAAACCGCTTACGATTCATCTGAAAAGGTTGTCGTTGTTGGAACCGACGAAGAAGAAGCCTACGAAGCTGACGTGGACTCTGGAGTAAGAATTCCACCATTTTCATGGAAGAAACTATGGTTATTCAGTGGACCAGGTTTTCTAATGAGTATAGCATTTTTGGATCCTGGAAACTTGGAAGGAGATCTTCAATCTGGTGCAATTGCTGGGTATTCGCTGTTATGGCTTCTTATGTGGGCTACGGCTATGGGGCTTTTGATTCAGCTTTTGTCAGCAAGGTTAGGTGTTGCTACGGGGAGACATTTGGCTGAACTTTGTAGAGATGAGTATCCTACTTGGGCAAGGATTGTTCTTTGGTTGATGACTGAAGTTGCTTTGATTGGTTCTGATATTCAAGAGGTTATAGGGAGTGCTATTGCTATTAGGATTTTGAGTAATGGCCTTGTTCCTCTTTGGGCTGGTGTTGTCATTACTGCTTTAGATTGTTTCATTTTCCTCTTTCTTGAGAATTATGGTGTGAGGAAATTGGAAGCATTTTTTGCCGTTCTTATTGCTATAATGGCTCTCTCATTTGCATGGATGTTTGGTGAAGCAAAGCCAGATGGTGTTGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTTGGTTGCATTATTATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAATCCAGGCAGGTTGACCCCAAAAAGAAAGGCCGCGTTCAAGAAGCTCTCAATTACTACTCCATAGAGTCCACCATTGCGCTAGTTGTCTCCTTTATTATTAATATATTTGTCACAACTGTGTTTGCTAAGGGCTTTTATGGTACTGAAATAGCAAATAGGATCGGTCTTGTAAATGCAGGGCAGTACCTTCAGGAGAAGTATGGAGGCGGAGTATTCCCAATCCTGTATATATGGGGTATTGGGTTACTAGCAGCTGGTCAGAGTAGCACTATTACTGGTACATATGCTGGACAATTCATCATGGGTGGTTTTCTGAATTTGAAGTTGAAAAAATGGATGAGGGCGTTGATTACTCGGAGTTTCGCAATCGTCCCGACTATGATAGTTGCACTTATATTTGATTCTTCAGAGGAATCATTAGATGTTTTGAATGAATGGCTTAATGTTCTTCAGTCAGTGCAAATCCCTTTTGCATTGATTCCCTTGCTTTGTTTGGTTTCAAAGGAACAAATAATGGGCACTTTCAAGATTGGCTCTGTCCTCAAGACCATTTCCTGGCTTGTGGCTGCTCTGGTGATAGTGATAAATGGCTATCTTTTGCTGGAATTCTTTTCCTCTGAAGTGAGTGGAGCAGTGTTCACAACTGTTGTGTGTGTAATAACAGCGGCATACGTTGCATTCATTATTTACCTTATTTCAAGCTCCGTTACGTTTTCACCTTGGCAAAGATTAACTCGATCAAAGACAGTTACCACCACGGAGAGTTGA

Protein sequence

>Msa0714380

MSHQQPLLEQQQEEGEETAYDSSEKVVVVGTDEEEAYEADVDSGVRIPPFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCRDEYPTWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGLVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAVLIAIMALSFAWMFGEAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPKKKGRVQEALNYYSIESTIALVVSFIINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWMRALITRSFAIVPTMIVALIFDSSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGSVLKTISWLVAALVIVINGYLLLEFFSSEVSGAVFTTVVCVITAAYVAFIIYLISSSVTFSPWQRLTRSKTVTTTES*