Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620970 | XP_024638887.1 | 98.819 | 508 | 6 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1034 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620970 | sp|P42211|ASPRX_ORYSJ | 59.412 | 510 | 191 | 4 | 1 | 508 | 1 | 496 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0620970 | Msa0878880 | 0.819479 | 1.136950e-52 | -8.615850e-47 |
| Msa0620970 | Msa1376760 | 0.908473 | 1.645853e-81 | -8.615850e-47 |
| Msa0170320 | Msa0620970 | 0.806537 | 7.838373e-50 | -8.615850e-47 |
| Msa0173480 | Msa0620970 | 0.913992 | 3.231613e-84 | -8.615850e-47 |
| Msa0276770 | Msa0620970 | 0.811945 | 5.429706e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620970 | MtrunA17_Chr1g0193211 | 98.819 | 508 | 6 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1034 |
| Msa0620970 | MtrunA17_Chr7g0271351 | 77.800 | 509 | 107 | 2 | 1 | 508 | 1 | 504 | 0.0 | 843 |
| Msa0620970 | MtrunA17_Chr4g0075181 | 56.705 | 522 | 209 | 6 | 1 | 508 | 1 | 519 | 0.0 | 585 |
| Msa0620970 | MtrunA17_Chr4g0069631 | 52.549 | 510 | 227 | 4 | 1 | 508 | 1 | 497 | 0.0 | 581 |
| Msa0620970 | MtrunA17_Chr2g0288851 | 58.027 | 517 | 201 | 5 | 1 | 508 | 1 | 510 | 0.0 | 580 |
| Msa0620970 | MtrunA17_Chr2g0302421 | 51.969 | 508 | 233 | 5 | 6 | 508 | 1 | 502 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620970 | AT1G11910.1 | 61.157 | 484 | 181 | 3 | 26 | 508 | 29 | 506 | 0.0 | 614 |
| Msa0620970 | AT1G11910.2 | 61.157 | 484 | 181 | 3 | 26 | 508 | 40 | 517 | 0.0 | 613 |
| Msa0620970 | AT1G62290.1 | 58.884 | 484 | 197 | 2 | 26 | 507 | 29 | 512 | 0.0 | 603 |
| Msa0620970 | AT1G62290.2 | 58.884 | 484 | 197 | 2 | 26 | 507 | 29 | 512 | 0.0 | 603 |
| Msa0620970 | AT4G04460.1 | 54.959 | 484 | 211 | 3 | 26 | 508 | 31 | 508 | 0.0 | 566 |
| Msa0620970 | AT1G62290.5 | 57.642 | 458 | 192 | 2 | 26 | 481 | 29 | 486 | 0.0 | 560 |
| Msa0620970 | AT4G04460.2 | 54.752 | 484 | 208 | 4 | 26 | 508 | 31 | 504 | 0.0 | 560 |
| Msa0620970 | AT1G62290.6 | 56.776 | 428 | 183 | 2 | 26 | 451 | 29 | 456 | 2.30e-179 | 512 |
| Msa0620970 | AT1G62290.4 | 56.776 | 428 | 183 | 2 | 26 | 451 | 29 | 456 | 2.30e-179 | 512 |
| Msa0620970 | AT1G62290.3 | 56.555 | 389 | 167 | 2 | 26 | 412 | 29 | 417 | 4.94e-159 | 458 |
| Msa0620970 | AT4G22050.1 | 39.113 | 248 | 145 | 5 | 69 | 313 | 30 | 274 | 2.53e-47 | 168 |
| Msa0620970 | AT4G22050.1 | 33.571 | 140 | 68 | 7 | 374 | 508 | 234 | 353 | 1.13e-11 | 66.6 |
| Msa0620970 | AT1G69100.2 | 38.976 | 254 | 144 | 9 | 77 | 322 | 47 | 297 | 5.01e-47 | 168 |
| Msa0620970 | AT1G69100.1 | 38.976 | 254 | 144 | 9 | 77 | 322 | 39 | 289 | 5.16e-47 | 167 |
Find 139 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGGTTGCTTTCTGTTTC+TGG | 0.027211 | 4_2:+72766390 | Msa0620970:CDS |
| ATTACTTGGGCTTGGCTTTC+AGG | 0.101496 | 4_2:+72767250 | Msa0620970:CDS |
| TATTTGAATGCACAATATTA+TGG | 0.213005 | 4_2:+72766611 | Msa0620970:CDS |
| TGGGGATCCAAAAGCGAAAA+AGG | 0.245272 | 4_2:+72767710 | Msa0620970:CDS |
| TTCTACCCCACCTTCACTTT+TGG | 0.252482 | 4_2:+72765395 | Msa0620970:five_prime_UTR |
| GCTCGTATGTAACTACTTAA+TGG | 0.253626 | 4_2:+72769991 | Msa0620970:three_prime_UTR |
| AAGGAAATTGTTACTGAATA+TGG | 0.254211 | 4_2:+72768390 | Msa0620970:CDS |
| ACTTTCGTTTGAGTTGATTC+TGG | 0.257963 | 4_2:-72768977 | None:intergenic |
| CCTGTCAGATGCTTGTGATT+TGG | 0.258700 | 4_2:+72768952 | Msa0620970:CDS |
| CTGAATATGGAGAGTTGATA+TGG | 0.273202 | 4_2:+72768403 | Msa0620970:CDS |
| AGGAAAGAGTCCACTGTTTC+TGG | 0.287444 | 4_2:+72765308 | Msa0620970:five_prime_UTR |
| ACCATTCTTAGTATATGTTT+TGG | 0.290296 | 4_2:-72766854 | None:intergenic |
| GTGGGTTGCTTTCTGTTTCT+GGG | 0.300164 | 4_2:+72766391 | Msa0620970:CDS |
| TATCACACTGTCTTTGACTA+TGG | 0.305502 | 4_2:+72769866 | Msa0620970:CDS |
| CTTCTTCCTTCTTTCTCCTA+TGG | 0.341567 | 4_2:+72766428 | Msa0620970:CDS |
| ATACCGGAAGTTCTAACCTT+TGG | 0.360156 | 4_2:+72766681 | Msa0620970:CDS |
| ATAATCCTTCAAAGGTACTA+TGG | 0.366326 | 4_2:-72766591 | None:intergenic |
| AACCCAAAGGTTAGAACTTC+CGG | 0.369549 | 4_2:-72766684 | None:intergenic |
| TACCGGAAGTTCTAACCTTT+GGG | 0.371359 | 4_2:+72766682 | Msa0620970:CDS |
| TATACATCACAGGTACAAAA+TGG | 0.374537 | 4_2:+72767641 | Msa0620970:intron |
| TTCATTGGAGGTCTCTCAAC+AGG | 0.375201 | 4_2:+72767931 | Msa0620970:CDS |
| TATGGATCTGGAGCAATATC+TGG | 0.380262 | 4_2:+72767020 | Msa0620970:CDS |
| GGCATCGTCGGATGATTTAC+TGG | 0.385524 | 4_2:-72766570 | None:intergenic |
| TGTGCTGCTATTGTGGATTC+AGG | 0.385643 | 4_2:+72768204 | Msa0620970:CDS |
| ACTGAAATCAACCATGCTAT+TGG | 0.387536 | 4_2:+72768339 | Msa0620970:CDS |
| TTTGTGCTGGCAAAGTTTGA+TGG | 0.391550 | 4_2:+72767227 | Msa0620970:CDS |
| GCACAATATTATGGAGAGAT+TGG | 0.391737 | 4_2:+72766620 | Msa0620970:CDS |
| GCAAAGTTTGATGGATTACT+TGG | 0.395124 | 4_2:+72767236 | Msa0620970:CDS |
| ATTGCAACTGTCTGTCTTAG+TGG | 0.405812 | 4_2:+72769661 | Msa0620970:CDS |
| TTTGATGGATTACTTGGGCT+TGG | 0.408707 | 4_2:+72767242 | Msa0620970:CDS |
| CTCCTCCAAGGGGTCCTCTC+TGG | 0.412726 | 4_2:+72769704 | Msa0620970:CDS |
| CGATGCCATAGTACCTTTGA+AGG | 0.413136 | 4_2:+72766586 | Msa0620970:CDS |
| TATTATGGAGAGATTGGAAT+TGG | 0.414971 | 4_2:+72766626 | Msa0620970:CDS |
| AGTTCTGAGTGTAGAATGTA+AGG | 0.415661 | 4_2:+72768371 | Msa0620970:CDS |
| ATATGGGATCTCTTGGTAGC+AGG | 0.416249 | 4_2:+72768420 | Msa0620970:CDS |
| TTTCAAAAGCTAACCTGCTC+TGG | 0.419852 | 4_2:-72769244 | None:intergenic |
| TCAGGAACATCATTGCTTGC+TGG | 0.420845 | 4_2:+72768222 | Msa0620970:CDS |
| TCTACTACCGACTCTCCATT+TGG | 0.426333 | 4_2:-72769154 | None:intergenic |
| TTGAAAATGCTGTGCCAGTA+TGG | 0.427010 | 4_2:+72767282 | Msa0620970:CDS |
| AAGGGTGGTGAGCTAATTCT+TGG | 0.431483 | 4_2:+72767729 | Msa0620970:CDS |
| CCGATAGTGAACGAAATGTT+TGG | 0.437728 | 4_2:-72769199 | None:intergenic |
| GATGGTGACTGAAAAGGAAC+AGG | 0.445152 | 4_2:+72768893 | Msa0620970:CDS |
| ACATCATGTAAAATAGCATA+TGG | 0.445708 | 4_2:+72767002 | Msa0620970:CDS |
| AAATAAAGAAACGAGTGTAT+TGG | 0.447128 | 4_2:+72765250 | None:intergenic |
| TGTTCACAAGTTGGTTTATG+TGG | 0.447600 | 4_2:+72768577 | Msa0620970:CDS |
| TCTTTGCCTTGTACCAATGA+TGG | 0.454127 | 4_2:-72766828 | None:intergenic |
| TTGCAACTGTCTGTCTTAGT+GGG | 0.456599 | 4_2:+72769662 | Msa0620970:CDS |
| AGGAAGAAGTGAGCATGTTA+AGG | 0.461966 | 4_2:-72766414 | None:intergenic |
| AGTCAAGATAATGTTAAACT+TGG | 0.466184 | 4_2:+72767050 | Msa0620970:CDS |
| AGGTAGTATTTCCTTTGTGC+TGG | 0.466744 | 4_2:+72767214 | Msa0620970:CDS |
| ATATGTCCCAGTCACTCAAA+AGG | 0.467120 | 4_2:+72767788 | Msa0620970:CDS |
| TCCAAAACATATACTAAGAA+TGG | 0.470813 | 4_2:+72766853 | Msa0620970:CDS |
| GTAGTTTATTACTAGTATGT+AGG | 0.472258 | 4_2:+72769934 | Msa0620970:three_prime_UTR |
| CCAAACATTTCGTTCACTAT+CGG | 0.480158 | 4_2:+72769199 | Msa0620970:CDS |
| ACTCTTTCCTGCTCGTACAA+TGG | 0.482508 | 4_2:-72765295 | None:intergenic |
| TGTAAAATAGCATATGGATC+TGG | 0.485019 | 4_2:+72767008 | Msa0620970:CDS |
| AGGTGGCTGTGCTGCTATTG+TGG | 0.487001 | 4_2:+72768197 | Msa0620970:CDS |
| AAAGTCAAGCAGACCTGTGT+TGG | 0.487437 | 4_2:+72766529 | Msa0620970:CDS |
| CAGTCACTCAAAAGGGCTAT+TGG | 0.490769 | 4_2:+72767796 | Msa0620970:CDS |
| GTACCAATGATGGGTGTAGC+AGG | 0.494741 | 4_2:-72766818 | None:intergenic |
| TTGCCTGCTACACCCATCAT+TGG | 0.494879 | 4_2:+72766815 | Msa0620970:CDS |
| AGAGTTGATATGGGATCTCT+TGG | 0.497460 | 4_2:+72768413 | Msa0620970:CDS |
| GACTATGGAAATCTCCAACT+TGG | 0.497542 | 4_2:+72769881 | Msa0620970:CDS |
| TTTAATGTCATATTTGATAC+CGG | 0.504218 | 4_2:+72766665 | Msa0620970:CDS |
| CTTTGCCTTGTACCAATGAT+GGG | 0.506920 | 4_2:-72766827 | None:intergenic |
| CAAAGGAAATACTACCTTCA+CGG | 0.507736 | 4_2:-72767208 | None:intergenic |
| CTATGGCGAACAAGTATTTG+TGG | 0.507847 | 4_2:+72766372 | Msa0620970:exon |
| TATGGCGAACAAGTATTTGT+GGG | 0.510711 | 4_2:+72766373 | Msa0620970:exon |
| TTTCGTCCTCAGTCCAGAGC+AGG | 0.513352 | 4_2:+72769231 | Msa0620970:CDS |
| ATATGACATTAAATGTCTGC+GGG | 0.514798 | 4_2:-72766655 | None:intergenic |
| CACTCAAAAGGGCTATTGGC+AGG | 0.514804 | 4_2:+72767800 | Msa0620970:CDS |
| AGGGTGGTGAGCTAATTCTT+GGG | 0.521468 | 4_2:+72767730 | Msa0620970:CDS |
| CCAAATCACAAGCATCTGAC+AGG | 0.525516 | 4_2:-72768952 | None:intergenic |
| AGCATACCAAAAGTGAAGGT+GGG | 0.526754 | 4_2:-72765401 | None:intergenic |
| AACCATGCTATTGGAGCTGA+AGG | 0.532160 | 4_2:+72768348 | Msa0620970:CDS |
| ACCGACTCTCCATTTGGACT+TGG | 0.532497 | 4_2:-72769148 | None:intergenic |
| GTTGATCCAAATCACTTCAA+AGG | 0.533108 | 4_2:+72767756 | Msa0620970:CDS |
| AAAGGAAATACTACCTTCAC+GGG | 0.535086 | 4_2:-72767207 | None:intergenic |
| GGTGATGTGTGTTCACAAGT+TGG | 0.536807 | 4_2:+72768568 | Msa0620970:CDS |
| ACAAAATCCATTGTACGAGC+AGG | 0.537967 | 4_2:+72765288 | Msa0620970:five_prime_UTR |
| AAGTCAAGCAGACCTGTGTT+GGG | 0.541826 | 4_2:+72766530 | Msa0620970:CDS |
| CACAAATACTTGTTCGCCAT+AGG | 0.542130 | 4_2:-72766371 | None:intergenic |
| ATAAATCCATAGGAGAAAGA+AGG | 0.545243 | 4_2:-72766434 | None:intergenic |
| GCAAGATCTTGTAAATGAGC+AGG | 0.545638 | 4_2:+72767668 | Msa0620970:CDS |
| TTCATTGAGGCTACCCGTGA+AGG | 0.546701 | 4_2:+72767194 | Msa0620970:CDS |
| CAAAGTTTGATGGATTACTT+GGG | 0.547133 | 4_2:+72767237 | Msa0620970:CDS |
| AACACATAAACAACAAAAGT+AGG | 0.547843 | 4_2:-72765339 | None:intergenic |
| TGAATATGGAGAGTTGATAT+GGG | 0.547882 | 4_2:+72768404 | Msa0620970:CDS |
| ACAAATACTTGTTCGCCATA+GGG | 0.554513 | 4_2:-72766370 | None:intergenic |
| CAGAGAGGACCCCTTGGAGG+AGG | 0.556555 | 4_2:-72769703 | None:intergenic |
| TATGTCCCAGTCACTCAAAA+GGG | 0.557674 | 4_2:+72767789 | Msa0620970:CDS |
| CGATGTTGTTGTCAAGGATG+TGG | 0.559094 | 4_2:+72767073 | Msa0620970:CDS |
| TTGGTTTATGTGGTGGCAAG+AGG | 0.559110 | 4_2:+72768587 | Msa0620970:CDS |
| CTACACCCATCATTGGTACA+AGG | 0.560382 | 4_2:+72766822 | Msa0620970:CDS |
| CAGCTTCAGCAAAACCAAGT+TGG | 0.561265 | 4_2:-72769895 | None:intergenic |
| GATTGAGATGGTGACTGAAA+AGG | 0.563634 | 4_2:+72768887 | Msa0620970:CDS |
| ATGTAACTACTTAATGGTGC+AGG | 0.563756 | 4_2:+72769997 | Msa0620970:three_prime_UTR |
| GAGAGCTTGCCAAGTCCAAA+TGG | 0.564520 | 4_2:+72769139 | Msa0620970:CDS |
| GCAAGAGGGTACAATCTAAG+AGG | 0.567144 | 4_2:+72768602 | Msa0620970:CDS |
| ACATACCAGAGAGGACCCCT+TGG | 0.568366 | 4_2:-72769709 | None:intergenic |
| GCATTCAAATAATCCTTCAA+AGG | 0.571708 | 4_2:-72766599 | None:intergenic |
| ATCAATTCTCATAAATCCAT+AGG | 0.571801 | 4_2:-72766444 | None:intergenic |
| ACTTGTGAACACACATCACC+AGG | 0.573452 | 4_2:-72768565 | None:intergenic |
| GGGTGGTGAGCTAATTCTTG+GGG | 0.575026 | 4_2:+72767731 | Msa0620970:CDS |
| TATGGGATCTCTTGGTAGCA+GGG | 0.575997 | 4_2:+72768421 | Msa0620970:CDS |
| TACCAGAGAGGACCCCTTGG+AGG | 0.578063 | 4_2:-72769706 | None:intergenic |
| CTCCTTCAGCTCCAATAGCA+TGG | 0.581282 | 4_2:-72768350 | None:intergenic |
| TAGCATTAGAGCTGCTAGGA+TGG | 0.582888 | 4_2:+72766493 | Msa0620970:CDS |
| CAAAGGTACTATGGCATCGT+CGG | 0.583586 | 4_2:-72766582 | None:intergenic |
| AATATGACATTAAATGTCTG+CGG | 0.583626 | 4_2:-72766656 | None:intergenic |
| ATACTTTAATACAACATACA+TGG | 0.587797 | 4_2:-72770113 | None:intergenic |
| GAAACTGTAGGATTTCATTG+AGG | 0.588396 | 4_2:+72767181 | Msa0620970:intron |
| AAGCATACCAAAAGTGAAGG+TGG | 0.592222 | 4_2:-72765402 | None:intergenic |
| TGGTTTATGTGGTGGCAAGA+GGG | 0.598763 | 4_2:+72768588 | Msa0620970:CDS |
| ACTTGGCGATGTTGTTGTCA+AGG | 0.601776 | 4_2:+72767067 | Msa0620970:CDS |
| AAACTACCACAAGTCTCACT+AGG | 0.604215 | 4_2:-72769918 | None:intergenic |
| TGAAAGCATACCAAAAGTGA+AGG | 0.606141 | 4_2:-72765405 | None:intergenic |
| GCCAAGTCCAAATGGAGAGT+CGG | 0.611187 | 4_2:+72769147 | Msa0620970:CDS |
| GCATACCAAAAGTGAAGGTG+GGG | 0.611673 | 4_2:-72765400 | None:intergenic |
| ATGGGATCTCTTGGTAGCAG+GGG | 0.615385 | 4_2:+72768422 | Msa0620970:CDS |
| CATAAACAACAAAAGTAGGA+AGG | 0.615535 | 4_2:-72765335 | None:intergenic |
| TTTGACATTCCTCCTCCAAG+GGG | 0.621730 | 4_2:+72769694 | Msa0620970:CDS |
| TTGATAGCATTAGAGCTGCT+AGG | 0.621778 | 4_2:+72766489 | Msa0620970:CDS |
| TCACAAGTTGGTTTATGTGG+TGG | 0.628952 | 4_2:+72768580 | Msa0620970:CDS |
| AACTACATGATACTTTAACA+TGG | 0.631393 | 4_2:-72770256 | None:intergenic |
| CTGCAGCATGGGGATTGAGA+TGG | 0.633556 | 4_2:+72768875 | Msa0620970:intron |
| ATCAAACTTTGCCAGCACAA+AGG | 0.640448 | 4_2:-72767225 | None:intergenic |
| ACATCACAGGTACAAAATGG+TGG | 0.642719 | 4_2:+72767644 | Msa0620970:intron |
| AGCTAACCTGCTCTGGACTG+AGG | 0.651008 | 4_2:-72769237 | None:intergenic |
| TGATCATATGCACCCAACAC+AGG | 0.654844 | 4_2:-72766542 | None:intergenic |
| GGAAGGTCGTCCAGAAACAG+TGG | 0.656322 | 4_2:-72765318 | None:intergenic |
| ATGACATTAAATGTCTGCGG+GGG | 0.693826 | 4_2:-72766653 | None:intergenic |
| ATGGTGACTGAAAAGGAACA+GGG | 0.704689 | 4_2:+72768894 | Msa0620970:CDS |
| TATGACATTAAATGTCTGCG+GGG | 0.719171 | 4_2:-72766654 | None:intergenic |
| ACTCAAACGAAAGTCAACCA+AGG | 0.720996 | 4_2:+72768986 | Msa0620970:CDS |
| GGTGGTGAGCTAATTCTTGG+GGG | 0.731770 | 4_2:+72767732 | Msa0620970:CDS |
| AAGCTGCCTAGTGAGACTTG+TGG | 0.732793 | 4_2:+72769912 | Msa0620970:exon |
| GTAAGAGAAACATACCAGAG+AGG | 0.774024 | 4_2:-72769718 | None:intergenic |
| ACTTTGACGATGGAACCCAA+AGG | 0.779989 | 4_2:-72766697 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTCTTTATATTTATTTA+TGG | + | chr4_2:72765694-72765713 | Msa0620970:intron | 10.0% |
| !! | AAAAGATTGAAGATTAAAAT+TGG | - | chr4_2:72765439-72765458 | None:intergenic | 15.0% |
| !! | AATGTAAAAAATAGACATTA+AGG | + | chr4_2:72766144-72766163 | Msa0620970:intron | 15.0% |
| !!! | TTACTACTTTTATGTAAATT+TGG | + | chr4_2:72766289-72766308 | Msa0620970:intron | 15.0% |
| !!! | TACTACTTTTATGTAAATTT+GGG | + | chr4_2:72766290-72766309 | Msa0620970:intron | 15.0% |
| !! | ATTAATGTATAATTCAAACA+TGG | - | chr4_2:72767398-72767417 | None:intergenic | 15.0% |
| !!! | TGTGTATATTTGTATATTTT+TGG | + | chr4_2:72768104-72768123 | Msa0620970:intron | 15.0% |
| !!! | AACATGTTGATATTATTTTT+AGG | + | chr4_2:72768165-72768184 | Msa0620970:intron | 15.0% |
| !! | AAATTGGTTGAAATTTAAAA+GGG | + | chr4_2:72770210-72770229 | Msa0620970:intron | 15.0% |
| !! | TATCATATAATTTATGCTTC+AGG | + | chr4_2:72765485-72765504 | Msa0620970:intron | 20.0% |
| !! | ATACTTATAAGATGTGATTT+AGG | + | chr4_2:72765823-72765842 | Msa0620970:intron | 20.0% |
| !! | TTGAAACGAATAATAAAACA+AGG | - | chr4_2:72766200-72766219 | None:intergenic | 20.0% |
| !! | TTTACATAAAAGTAGTAATG+AGG | - | chr4_2:72766287-72766306 | None:intergenic | 20.0% |
| !! | TATTTGAATGCACAATATTA+TGG | + | chr4_2:72766611-72766630 | Msa0620970:CDS | 20.0% |
| !! | TTTAATGTCATATTTGATAC+CGG | + | chr4_2:72766665-72766684 | Msa0620970:CDS | 20.0% |
| !!! | AAACAAAATTTAGTTTGATC+AGG | + | chr4_2:72767829-72767848 | Msa0620970:intron | 20.0% |
| !! | ATAGTGAATACTGAAAAATA+AGG | + | chr4_2:72767992-72768011 | Msa0620970:intron | 20.0% |
| !! | TAGTGAATACTGAAAAATAA+GGG | + | chr4_2:72767993-72768012 | Msa0620970:intron | 20.0% |
| !! | AGCTATGATTGAATAATATA+TGG | - | chr4_2:72768273-72768292 | None:intergenic | 20.0% |
| !! | AATCAATATTAAGCTCATTT+AGG | - | chr4_2:72768534-72768553 | None:intergenic | 20.0% |
| !!! | TTAATATTGATTTTCAGGTA+CGG | + | chr4_2:72768542-72768561 | Msa0620970:intron | 20.0% |
| !! | ATCGAAATACAATGAATTAA+AGG | - | chr4_2:72768692-72768711 | None:intergenic | 20.0% |
| !! | TTAATTCATTGTATTTCGAT+TGG | + | chr4_2:72768692-72768711 | Msa0620970:intron | 20.0% |
| !!! | TGTGAATATTTCAGATTTTT+AGG | + | chr4_2:72769372-72769391 | Msa0620970:intron | 20.0% |
| !! | TTGATCTATAGTATATTTGT+TGG | + | chr4_2:72769587-72769606 | Msa0620970:intron | 20.0% |
| !!! | TTTCAGTATATTTTGAAAAC+TGG | + | chr4_2:72769631-72769650 | Msa0620970:intron | 20.0% |
| !! | ATACTTTAATACAACATACA+TGG | - | chr4_2:72770116-72770135 | None:intergenic | 20.0% |
| !! | GAAATTGGTTGAAATTTAAA+AGG | + | chr4_2:72770209-72770228 | Msa0620970:intron | 20.0% |
| !! | AATTGGTTGAAATTTAAAAG+GGG | + | chr4_2:72770211-72770230 | Msa0620970:intron | 20.0% |
| !!! | TACAATGGATTTTGTATACT+TGG | - | chr4_2:72765283-72765302 | None:intergenic | 25.0% |
| ! | AACACATAAACAACAAAAGT+AGG | - | chr4_2:72765342-72765361 | None:intergenic | 25.0% |
| ! | ACTGAAAAGAAAAAGAATCA+TGG | - | chr4_2:72765616-72765635 | None:intergenic | 25.0% |
| !!! | CTCAAAAGCATTTAGTATAT+GGG | - | chr4_2:72766002-72766021 | None:intergenic | 25.0% |
| !!! | ACTCAAAAGCATTTAGTATA+TGG | - | chr4_2:72766003-72766022 | None:intergenic | 25.0% |
| ! | CGAATAATAAAACAAGGAAA+TGG | - | chr4_2:72766194-72766213 | None:intergenic | 25.0% |
| ! | TTTATGTAAATTTGGGAGTT+TGG | + | chr4_2:72766297-72766316 | Msa0620970:intron | 25.0% |
| ! | ATCAATTCTCATAAATCCAT+AGG | - | chr4_2:72766447-72766466 | None:intergenic | 25.0% |
| ! | AATATGACATTAAATGTCTG+CGG | - | chr4_2:72766659-72766678 | None:intergenic | 25.0% |
| ! | TCCAAAACATATACTAAGAA+TGG | + | chr4_2:72766853-72766872 | Msa0620970:CDS | 25.0% |
| !! | ACCATTCTTAGTATATGTTT+TGG | - | chr4_2:72766857-72766876 | None:intergenic | 25.0% |
| ! | TTACTCATATTCATTTGTAG+TGG | + | chr4_2:72766892-72766911 | Msa0620970:intron | 25.0% |
| ! | ACATCATGTAAAATAGCATA+TGG | + | chr4_2:72767002-72767021 | Msa0620970:CDS | 25.0% |
| ! | AGTCAAGATAATGTTAAACT+TGG | + | chr4_2:72767050-72767069 | Msa0620970:CDS | 25.0% |
| !! | AGTTTTTATACAGCAAATCT+TGG | + | chr4_2:72767141-72767160 | Msa0620970:intron | 25.0% |
| ! | TTGCATGTCAGAATTAAATA+TGG | + | chr4_2:72767345-72767364 | Msa0620970:intron | 25.0% |
| ! | TCTGTTATGTCCATTAATTT+AGG | + | chr4_2:72767372-72767391 | Msa0620970:intron | 25.0% |
| !! | CTTCATTTTATCTCTTGTTA+TGG | - | chr4_2:72767464-72767483 | None:intergenic | 25.0% |
| ! | TTCAAATGTGTAGTTTAATG+CGG | + | chr4_2:72767859-72767878 | Msa0620970:intron | 25.0% |
| !! | TATACCTTTTCAGATTGAAA+TGG | + | chr4_2:72767900-72767919 | Msa0620970:intron | 25.0% |
| !! | ATACCTTTTCAGATTGAAAT+GGG | + | chr4_2:72767901-72767920 | Msa0620970:intron | 25.0% |
| ! | ACTATCTTATTGTTGAAGAA+CGG | - | chr4_2:72767965-72767984 | None:intergenic | 25.0% |
| ! | AAAATAAGGGAGTAATTTAG+TGG | + | chr4_2:72768006-72768025 | Msa0620970:intron | 25.0% |
| !!! | AAAGGTTTTAAGATATGGTA+TGG | + | chr4_2:72768032-72768051 | Msa0620970:intron | 25.0% |
| !!! | CATTTATACTTTTTGTTGAC+CGG | + | chr4_2:72768296-72768315 | Msa0620970:intron | 25.0% |
| ! | AAGGAAATTGTTACTGAATA+TGG | + | chr4_2:72768390-72768409 | Msa0620970:CDS | 25.0% |
| !!! | TGAGCTTAATATTGATTTTC+AGG | + | chr4_2:72768537-72768556 | Msa0620970:intron | 25.0% |
| !!! | TTAGTTTCTTTTTTTGTCAC+TGG | + | chr4_2:72768773-72768792 | Msa0620970:intron | 25.0% |
| !!! | TAGTTTCTTTTTTTGTCACT+GGG | + | chr4_2:72768774-72768793 | Msa0620970:intron | 25.0% |
| !! | GTAGTTGAATATTTTATCCT+TGG | - | chr4_2:72769006-72769025 | None:intergenic | 25.0% |
| ! | ATAATTCGAAACATTAACTC+AGG | - | chr4_2:72769068-72769087 | None:intergenic | 25.0% |
| ! | AAAATACCTTTCCAAAAGAT+GGG | + | chr4_2:72769476-72769495 | Msa0620970:intron | 25.0% |
| !!! | TATATTTTGAAAACTGGAGA+AGG | + | chr4_2:72769637-72769656 | Msa0620970:CDS | 25.0% |
| !!! | AGCAAGATTTATTTTAAGCA+AGG | - | chr4_2:72769789-72769808 | None:intergenic | 25.0% |
| ! | GTAGTTTATTACTAGTATGT+AGG | + | chr4_2:72769934-72769953 | Msa0620970:three_prime_UTR | 25.0% |
| CATAAACAACAAAAGTAGGA+AGG | - | chr4_2:72765338-72765357 | None:intergenic | 30.0% | |
| AGAAGCAACATGAAAATATG+TGG | - | chr4_2:72765584-72765603 | None:intergenic | 30.0% | |
| !! | GTTAGTGATTAGTCTTACAT+CGG | + | chr4_2:72765959-72765978 | Msa0620970:intron | 30.0% |
| ATAAATCCATAGGAGAAAGA+AGG | - | chr4_2:72766437-72766456 | None:intergenic | 30.0% | |
| !! | ATAATCCTTCAAAGGTACTA+TGG | - | chr4_2:72766594-72766613 | None:intergenic | 30.0% |
| GCATTCAAATAATCCTTCAA+AGG | - | chr4_2:72766602-72766621 | None:intergenic | 30.0% | |
| TATTATGGAGAGATTGGAAT+TGG | + | chr4_2:72766626-72766645 | Msa0620970:CDS | 30.0% | |
| ATATGACATTAAATGTCTGC+GGG | - | chr4_2:72766658-72766677 | None:intergenic | 30.0% | |
| GAATATGAGTAATGAGAAGA+TGG | - | chr4_2:72766884-72766903 | None:intergenic | 30.0% | |
| GGACATTAGAACGTATTAAA+TGG | - | chr4_2:72766960-72766979 | None:intergenic | 30.0% | |
| CCTGAATTGACAAGTAAAAA+AGG | - | chr4_2:72766981-72767000 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTACTTGTCAATTC+AGG | + | chr4_2:72766978-72766997 | Msa0620970:intron | 30.0% |
| TGTAAAATAGCATATGGATC+TGG | + | chr4_2:72767008-72767027 | Msa0620970:CDS | 30.0% | |
| ! | TTTTATACAGCAAATCTTGG+AGG | + | chr4_2:72767144-72767163 | Msa0620970:intron | 30.0% |
| TATATTGTCCTTGAAACTGT+AGG | + | chr4_2:72767169-72767188 | Msa0620970:intron | 30.0% | |
| AATGAAATCCTACAGTTTCA+AGG | - | chr4_2:72767180-72767199 | None:intergenic | 30.0% | |
| !! | CAAAGTTTGATGGATTACTT+GGG | + | chr4_2:72767237-72767256 | Msa0620970:CDS | 30.0% |
| TGCAAATGAAATAACAGGAT+AGG | - | chr4_2:72767320-72767339 | None:intergenic | 30.0% | |
| TCAGATGCAAATGAAATAAC+AGG | - | chr4_2:72767325-72767344 | None:intergenic | 30.0% | |
| TCAAACATGGCCTAAATTAA+TGG | - | chr4_2:72767385-72767404 | None:intergenic | 30.0% | |
| CCTATACATAAGCACTTATT+TGG | - | chr4_2:72767435-72767454 | None:intergenic | 30.0% | |
| CCAAATAAGTGCTTATGTAT+AGG | + | chr4_2:72767432-72767451 | Msa0620970:intron | 30.0% | |
| TGTATATCCTAGAGAACTTA+TGG | + | chr4_2:72767496-72767515 | Msa0620970:intron | 30.0% | |
| CTTATTTCCATAAGTTCTCT+AGG | - | chr4_2:72767506-72767525 | None:intergenic | 30.0% | |
| !! | GATGTATAATGGATCACTAA+AGG | - | chr4_2:72767629-72767648 | None:intergenic | 30.0% |
| TTTGTACCTGTGATGTATAA+TGG | - | chr4_2:72767640-72767659 | None:intergenic | 30.0% | |
| TATACATCACAGGTACAAAA+TGG | + | chr4_2:72767641-72767660 | Msa0620970:intron | 30.0% | |
| !!! | TGTTTTCCTTTGAAGTGATT+TGG | - | chr4_2:72767765-72767784 | None:intergenic | 30.0% |
| !!! | GGTTGAAAGGTTTTAAGATA+TGG | + | chr4_2:72768027-72768046 | Msa0620970:intron | 30.0% |
| ATACACATTGTACATATGAG+AGG | - | chr4_2:72768091-72768110 | None:intergenic | 30.0% | |
| TTACAAAGTGCATCTAATTG+TGG | + | chr4_2:72768142-72768161 | Msa0620970:intron | 30.0% | |
| AAGATGTAAGTACATACAGT+TGG | - | chr4_2:72768249-72768268 | None:intergenic | 30.0% | |
| !! | TGAATATGGAGAGTTGATAT+GGG | + | chr4_2:72768404-72768423 | Msa0620970:CDS | 30.0% |
| ! | TTAAGCTCATTTAGGTTCAA+AGG | - | chr4_2:72768526-72768545 | None:intergenic | 30.0% |
| TGGTAATAATTTGAAGATGC+TGG | + | chr4_2:72768712-72768731 | Msa0620970:intron | 30.0% | |
| CAGTGATTTATACTCTTCAT+TGG | + | chr4_2:72768741-72768760 | Msa0620970:intron | 30.0% | |
| ! | ATTGCAATGCTACAAGATTT+TGG | + | chr4_2:72768820-72768839 | Msa0620970:intron | 30.0% |
| GAATTATCCTATTGCTTTGA+TGG | + | chr4_2:72769081-72769100 | Msa0620970:intron | 30.0% | |
| AATCAATCCATCAAAGCAAT+AGG | - | chr4_2:72769091-72769110 | None:intergenic | 30.0% | |
| !!! | TTGCTTTGATGGATTGATTT+TGG | + | chr4_2:72769092-72769111 | Msa0620970:intron | 30.0% |
| !!! | CATCTTTTGGAAAGGTATTT+TGG | - | chr4_2:72769477-72769496 | None:intergenic | 30.0% |
| CAAAATACCTTTCCAAAAGA+TGG | + | chr4_2:72769475-72769494 | Msa0620970:intron | 30.0% | |
| TTACTCATATCTACATCCAA+AGG | + | chr4_2:72769544-72769563 | Msa0620970:intron | 30.0% | |
| ! | TTGTCCTTTTTCTTTTCTGA+AGG | + | chr4_2:72769816-72769835 | Msa0620970:intron | 30.0% |
| GAATCCTTCAGAAAAGAAAA+AGG | - | chr4_2:72769823-72769842 | None:intergenic | 30.0% | |
| !! | TTTCTTTTCTGAAGGATTCT+TGG | + | chr4_2:72769824-72769843 | Msa0620970:intron | 30.0% |
| GTATCATGTATCCATGTTTA+AGG | + | chr4_2:72770159-72770178 | Msa0620970:intron | 30.0% | |
| ATGTACATGATCCTTAAACA+TGG | - | chr4_2:72770173-72770192 | None:intergenic | 30.0% | |
| ! | TGAAAGCATACCAAAAGTGA+AGG | - | chr4_2:72765408-72765427 | None:intergenic | 35.0% |
| !!! | TTTTTTGAATATTCCCCACG+TGG | + | chr4_2:72765647-72765666 | Msa0620970:intron | 35.0% |
| TTAAAGTCAGCAACAATCGA+AGG | - | chr4_2:72765875-72765894 | None:intergenic | 35.0% | |
| !! | AATGCTTTTGAGTGAAGATG+TGG | + | chr4_2:72766010-72766029 | Msa0620970:intron | 35.0% |
| !! | TGCAATAACACTTGCTATGT+GGG | - | chr4_2:72766081-72766100 | None:intergenic | 35.0% |
| !! | TTGCAATAACACTTGCTATG+TGG | - | chr4_2:72766082-72766101 | None:intergenic | 35.0% |
| TTTACAAACGTCAACGAAGT+TGG | + | chr4_2:72766255-72766274 | Msa0620970:intron | 35.0% | |
| AAGAAGAAAGTAAGTGAAGG+TGG | - | chr4_2:72766331-72766350 | None:intergenic | 35.0% | |
| GGTAAGAAGAAAGTAAGTGA+AGG | - | chr4_2:72766334-72766353 | None:intergenic | 35.0% | |
| ACAAATACTTGTTCGCCATA+GGG | - | chr4_2:72766373-72766392 | None:intergenic | 35.0% | |
| TATGGCGAACAAGTATTTGT+GGG | + | chr4_2:72766373-72766392 | Msa0620970:exon | 35.0% | |
| GCACAATATTATGGAGAGAT+TGG | + | chr4_2:72766620-72766639 | Msa0620970:CDS | 35.0% | |
| TATGACATTAAATGTCTGCG+GGG | - | chr4_2:72766657-72766676 | None:intergenic | 35.0% | |
| GAAAAATAGCACTTTGACGA+TGG | - | chr4_2:72766710-72766729 | None:intergenic | 35.0% | |
| TACACTTTGCGTGATTTCAT+CGG | - | chr4_2:72766918-72766937 | None:intergenic | 35.0% | |
| GAAACTGTAGGATTTCATTG+AGG | + | chr4_2:72767181-72767200 | Msa0620970:intron | 35.0% | |
| AAAGGAAATACTACCTTCAC+GGG | - | chr4_2:72767210-72767229 | None:intergenic | 35.0% | |
| CAAAGGAAATACTACCTTCA+CGG | - | chr4_2:72767211-72767230 | None:intergenic | 35.0% | |
| !! | GCAAAGTTTGATGGATTACT+TGG | + | chr4_2:72767236-72767255 | Msa0620970:CDS | 35.0% |
| CACTAAAGGTCTGTTTGAAT+TGG | - | chr4_2:72767615-72767634 | None:intergenic | 35.0% | |
| AGTGATCCATTATACATCAC+AGG | + | chr4_2:72767631-72767650 | Msa0620970:intron | 35.0% | |
| !!! | TGTTCTCTTTTTGGCTCAAT+GGG | + | chr4_2:72767691-72767710 | Msa0620970:CDS | 35.0% |
| GTTGATCCAAATCACTTCAA+AGG | + | chr4_2:72767756-72767775 | Msa0620970:CDS | 35.0% | |
| GGAGTAATTTAGTGGTTGAA+AGG | + | chr4_2:72768014-72768033 | Msa0620970:intron | 35.0% | |
| !!! | TTATTTTTAGGCGTTTGCGA+AGG | + | chr4_2:72768177-72768196 | Msa0620970:intron | 35.0% |
| ! | ACAACAGTCTGAAATTCAAC+CGG | - | chr4_2:72768318-72768337 | None:intergenic | 35.0% |
| ACTGAAATCAACCATGCTAT+TGG | + | chr4_2:72768339-72768358 | Msa0620970:CDS | 35.0% | |
| !! | AGTTCTGAGTGTAGAATGTA+AGG | + | chr4_2:72768371-72768390 | Msa0620970:CDS | 35.0% |
| !! | CTGAATATGGAGAGTTGATA+TGG | + | chr4_2:72768403-72768422 | Msa0620970:CDS | 35.0% |
| !! | TGTTCACAAGTTGGTTTATG+TGG | + | chr4_2:72768577-72768596 | Msa0620970:CDS | 35.0% |
| !! | ACTTTCGTTTGAGTTGATTC+TGG | - | chr4_2:72768980-72768999 | None:intergenic | 35.0% |
| CCAAACATTTCGTTCACTAT+CGG | + | chr4_2:72769199-72769218 | Msa0620970:CDS | 35.0% | |
| !! | ATCAAGAGTAAGTTAGCCTT+TGG | - | chr4_2:72769563-72769582 | None:intergenic | 35.0% |
| !! | TTCTTGGCGATGTTTTTATG+AGG | + | chr4_2:72769840-72769859 | Msa0620970:CDS | 35.0% |
| !! | TCTTGGCGATGTTTTTATGA+GGG | + | chr4_2:72769841-72769860 | Msa0620970:CDS | 35.0% |
| TATCACACTGTCTTTGACTA+TGG | + | chr4_2:72769866-72769885 | Msa0620970:CDS | 35.0% | |
| GCTCGTATGTAACTACTTAA+TGG | + | chr4_2:72769991-72770010 | Msa0620970:three_prime_UTR | 35.0% | |
| ATGTAACTACTTAATGGTGC+AGG | + | chr4_2:72769997-72770016 | Msa0620970:three_prime_UTR | 35.0% | |
| CTCTTTCAACACACTGAAAT+TGG | + | chr4_2:72770194-72770213 | Msa0620970:intron | 35.0% | |
| GGATACATAATGCTTGAACT+GGG | - | chr4_2:72770238-72770257 | None:intergenic | 35.0% | |
| TGGATACATAATGCTTGAAC+TGG | - | chr4_2:72770239-72770258 | None:intergenic | 35.0% | |
| ACAAAATCCATTGTACGAGC+AGG | + | chr4_2:72765288-72765307 | Msa0620970:five_prime_UTR | 40.0% | |
| AGCATACCAAAAGTGAAGGT+GGG | - | chr4_2:72765404-72765423 | None:intergenic | 40.0% | |
| AAGCATACCAAAAGTGAAGG+TGG | - | chr4_2:72765405-72765424 | None:intergenic | 40.0% | |
| !! | TTCTGGTTTGTTGATGGTCT+TGG | + | chr4_2:72766035-72766054 | Msa0620970:intron | 40.0% |
| !! | GCAATAACACTTGCTATGTG+GGG | - | chr4_2:72766080-72766099 | None:intergenic | 40.0% |
| CACAAATACTTGTTCGCCAT+AGG | - | chr4_2:72766374-72766393 | None:intergenic | 40.0% | |
| CTATGGCGAACAAGTATTTG+TGG | + | chr4_2:72766372-72766391 | Msa0620970:exon | 40.0% | |
| AGGAAGAAGTGAGCATGTTA+AGG | - | chr4_2:72766417-72766436 | None:intergenic | 40.0% | |
| CTTCTTCCTTCTTTCTCCTA+TGG | + | chr4_2:72766428-72766447 | Msa0620970:CDS | 40.0% | |
| ! | TTGATAGCATTAGAGCTGCT+AGG | + | chr4_2:72766489-72766508 | Msa0620970:CDS | 40.0% |
| ATGACATTAAATGTCTGCGG+GGG | - | chr4_2:72766656-72766675 | None:intergenic | 40.0% | |
| ! | ATACCGGAAGTTCTAACCTT+TGG | + | chr4_2:72766681-72766700 | Msa0620970:CDS | 40.0% |
| ! | TACCGGAAGTTCTAACCTTT+GGG | + | chr4_2:72766682-72766701 | Msa0620970:CDS | 40.0% |
| AACCCAAAGGTTAGAACTTC+CGG | - | chr4_2:72766687-72766706 | None:intergenic | 40.0% | |
| CTTTGCCTTGTACCAATGAT+GGG | - | chr4_2:72766830-72766849 | None:intergenic | 40.0% | |
| TCTTTGCCTTGTACCAATGA+TGG | - | chr4_2:72766831-72766850 | None:intergenic | 40.0% | |
| ! | TATGGATCTGGAGCAATATC+TGG | + | chr4_2:72767020-72767039 | Msa0620970:CDS | 40.0% |
| AGGTAGTATTTCCTTTGTGC+TGG | + | chr4_2:72767214-72767233 | Msa0620970:CDS | 40.0% | |
| ATCAAACTTTGCCAGCACAA+AGG | - | chr4_2:72767228-72767247 | None:intergenic | 40.0% | |
| ! | TTTGTGCTGGCAAAGTTTGA+TGG | + | chr4_2:72767227-72767246 | Msa0620970:CDS | 40.0% |
| !! | TTTGATGGATTACTTGGGCT+TGG | + | chr4_2:72767242-72767261 | Msa0620970:CDS | 40.0% |
| TTGAAAATGCTGTGCCAGTA+TGG | + | chr4_2:72767282-72767301 | Msa0620970:CDS | 40.0% | |
| GGTCGAAAAACATACCATAC+TGG | - | chr4_2:72767299-72767318 | None:intergenic | 40.0% | |
| ACATCACAGGTACAAAATGG+TGG | + | chr4_2:72767644-72767663 | Msa0620970:intron | 40.0% | |
| GCAAGATCTTGTAAATGAGC+AGG | + | chr4_2:72767668-72767687 | Msa0620970:CDS | 40.0% | |
| ! | ATGAGCAGGTGTTCTCTTTT+TGG | + | chr4_2:72767682-72767701 | Msa0620970:CDS | 40.0% |
| !!! | GTGTTCTCTTTTTGGCTCAA+TGG | + | chr4_2:72767690-72767709 | Msa0620970:CDS | 40.0% |
| !!! | GTTCTCTTTTTGGCTCAATG+GGG | + | chr4_2:72767692-72767711 | Msa0620970:CDS | 40.0% |
| ATATGTCCCAGTCACTCAAA+AGG | + | chr4_2:72767788-72767807 | Msa0620970:CDS | 40.0% | |
| TATGTCCCAGTCACTCAAAA+GGG | + | chr4_2:72767789-72767808 | Msa0620970:CDS | 40.0% | |
| !! | AATAGCCCTTTTGAGTGACT+GGG | - | chr4_2:72767797-72767816 | None:intergenic | 40.0% |
| TCGCCCATTTCAATCTGAAA+AGG | - | chr4_2:72767907-72767926 | None:intergenic | 40.0% | |
| !!! | GAAATGGGCGACTTTTTCAT+TGG | + | chr4_2:72767916-72767935 | Msa0620970:CDS | 40.0% |
| CACATTGTACATATGAGAGG+AGG | - | chr4_2:72768088-72768107 | None:intergenic | 40.0% | |
| !! | AGAGTTGATATGGGATCTCT+TGG | + | chr4_2:72768413-72768432 | Msa0620970:CDS | 40.0% |
| TAACAAGAAACACTGAAGGG+TGG | - | chr4_2:72768461-72768480 | None:intergenic | 40.0% | |
| GGGTAACAAGAAACACTGAA+GGG | - | chr4_2:72768464-72768483 | None:intergenic | 40.0% | |
| AGGGTAACAAGAAACACTGA+AGG | - | chr4_2:72768465-72768484 | None:intergenic | 40.0% | |
| !! | TCACAAGTTGGTTTATGTGG+TGG | + | chr4_2:72768580-72768599 | Msa0620970:CDS | 40.0% |
| TTTGTCACTGGGAAGAGTTT+AGG | + | chr4_2:72768785-72768804 | Msa0620970:intron | 40.0% | |
| TAGCATTGCAATGCTGGAAT+AGG | - | chr4_2:72768812-72768831 | None:intergenic | 40.0% | |
| ATCTTGTAGCATTGCAATGC+TGG | - | chr4_2:72768818-72768837 | None:intergenic | 40.0% | |
| GATTGAGATGGTGACTGAAA+AGG | + | chr4_2:72768887-72768906 | Msa0620970:CDS | 40.0% | |
| ATGGTGACTGAAAAGGAACA+GGG | + | chr4_2:72768894-72768913 | Msa0620970:CDS | 40.0% | |
| ACTCAAACGAAAGTCAACCA+AGG | + | chr4_2:72768986-72769005 | Msa0620970:CDS | 40.0% | |
| !! | GTAAGCCTTTTGAAAGATCC+TGG | + | chr4_2:72769035-72769054 | Msa0620970:intron | 40.0% |
| TCTGACCAGGATCTTTCAAA+AGG | - | chr4_2:72769043-72769062 | None:intergenic | 40.0% | |
| ATTAACTCAGGTTTCTGACC+AGG | - | chr4_2:72769056-72769075 | None:intergenic | 40.0% | |
| CCGATAGTGAACGAAATGTT+TGG | - | chr4_2:72769202-72769221 | None:intergenic | 40.0% | |
| TTTCAAAAGCTAACCTGCTC+TGG | - | chr4_2:72769247-72769266 | None:intergenic | 40.0% | |
| ! | CAATTATGCTGCCCATCTTT+TGG | - | chr4_2:72769490-72769509 | None:intergenic | 40.0% |
| ATTGCAACTGTCTGTCTTAG+TGG | + | chr4_2:72769661-72769680 | Msa0620970:CDS | 40.0% | |
| TTGCAACTGTCTGTCTTAGT+GGG | + | chr4_2:72769662-72769681 | Msa0620970:CDS | 40.0% | |
| ! | TTTTGACATTCCTCCTCCAA+GGG | + | chr4_2:72769693-72769712 | Msa0620970:CDS | 40.0% |
| GTAAGAGAAACATACCAGAG+AGG | - | chr4_2:72769721-72769740 | None:intergenic | 40.0% | |
| GACTATGGAAATCTCCAACT+TGG | + | chr4_2:72769881-72769900 | Msa0620970:CDS | 40.0% | |
| AAACTACCACAAGTCTCACT+AGG | - | chr4_2:72769921-72769940 | None:intergenic | 40.0% | |
| ACTCTTTCCTGCTCGTACAA+TGG | - | chr4_2:72765298-72765317 | None:intergenic | 45.0% | |
| AGGAAAGAGTCCACTGTTTC+TGG | + | chr4_2:72765308-72765327 | Msa0620970:five_prime_UTR | 45.0% | |
| ! | TTCTACCCCACCTTCACTTT+TGG | + | chr4_2:72765395-72765414 | Msa0620970:five_prime_UTR | 45.0% |
| GCATACCAAAAGTGAAGGTG+GGG | - | chr4_2:72765403-72765422 | None:intergenic | 45.0% | |
| TAGATTCACGCTATCCACGT+GGG | - | chr4_2:72765664-72765683 | None:intergenic | 45.0% | |
| ATAGATTCACGCTATCCACG+TGG | - | chr4_2:72765665-72765684 | None:intergenic | 45.0% | |
| AGTCAGCAACAATCGAAGGT+AGG | - | chr4_2:72765871-72765890 | None:intergenic | 45.0% | |
| CGATATCCTAACCGATCAGT+AGG | + | chr4_2:72765912-72765931 | Msa0620970:intron | 45.0% | |
| TGAGTGAAGATGTGGTGTTC+TGG | + | chr4_2:72766018-72766037 | Msa0620970:intron | 45.0% | |
| !! | GTGGTGTTCTGGTTTGTTGA+TGG | + | chr4_2:72766029-72766048 | Msa0620970:intron | 45.0% |
| AAACGTCAACGAAGTTGGAC+AGG | + | chr4_2:72766260-72766279 | Msa0620970:intron | 45.0% | |
| TACTTTCTTCTTACCCTGCC+TGG | + | chr4_2:72766339-72766358 | Msa0620970:intron | 45.0% | |
| ! | TGTGGGTTGCTTTCTGTTTC+TGG | + | chr4_2:72766390-72766409 | Msa0620970:CDS | 45.0% |
| ! | GTGGGTTGCTTTCTGTTTCT+GGG | + | chr4_2:72766391-72766410 | Msa0620970:CDS | 45.0% |
| TAGCATTAGAGCTGCTAGGA+TGG | + | chr4_2:72766493-72766512 | Msa0620970:CDS | 45.0% | |
| AAAGTCAAGCAGACCTGTGT+TGG | + | chr4_2:72766529-72766548 | Msa0620970:CDS | 45.0% | |
| AAGTCAAGCAGACCTGTGTT+GGG | + | chr4_2:72766530-72766549 | Msa0620970:CDS | 45.0% | |
| TGATCATATGCACCCAACAC+AGG | - | chr4_2:72766545-72766564 | None:intergenic | 45.0% | |
| !! | CAAAGGTACTATGGCATCGT+CGG | - | chr4_2:72766585-72766604 | None:intergenic | 45.0% |
| CGATGCCATAGTACCTTTGA+AGG | + | chr4_2:72766586-72766605 | Msa0620970:CDS | 45.0% | |
| ACTTTGACGATGGAACCCAA+AGG | - | chr4_2:72766700-72766719 | None:intergenic | 45.0% | |
| CTACACCCATCATTGGTACA+AGG | + | chr4_2:72766822-72766841 | Msa0620970:CDS | 45.0% | |
| ACTTGGCGATGTTGTTGTCA+AGG | + | chr4_2:72767067-72767086 | Msa0620970:CDS | 45.0% | |
| CGATGTTGTTGTCAAGGATG+TGG | + | chr4_2:72767073-72767092 | Msa0620970:CDS | 45.0% | |
| ! | ATTACTTGGGCTTGGCTTTC+AGG | + | chr4_2:72767250-72767269 | Msa0620970:CDS | 45.0% |
| TGGGGATCCAAAAGCGAAAA+AGG | + | chr4_2:72767710-72767729 | Msa0620970:CDS | 45.0% | |
| GGGGATCCAAAAGCGAAAAA+GGG | + | chr4_2:72767711-72767730 | Msa0620970:CDS | 45.0% | |
| GATCCAAAAGCGAAAAAGGG+TGG | + | chr4_2:72767714-72767733 | Msa0620970:CDS | 45.0% | |
| !! | TCACCACCCTTTTTCGCTTT+TGG | - | chr4_2:72767720-72767739 | None:intergenic | 45.0% |
| AAGGGTGGTGAGCTAATTCT+TGG | + | chr4_2:72767729-72767748 | Msa0620970:CDS | 45.0% | |
| AGGGTGGTGAGCTAATTCTT+GGG | + | chr4_2:72767730-72767749 | Msa0620970:CDS | 45.0% | |
| !! | CAATAGCCCTTTTGAGTGAC+TGG | - | chr4_2:72767798-72767817 | None:intergenic | 45.0% |
| CAGTCACTCAAAAGGGCTAT+TGG | + | chr4_2:72767796-72767815 | Msa0620970:CDS | 45.0% | |
| !!! | ATGGGCGACTTTTTCATTGG+AGG | + | chr4_2:72767919-72767938 | Msa0620970:CDS | 45.0% |
| TTCATTGGAGGTCTCTCAAC+AGG | + | chr4_2:72767931-72767950 | Msa0620970:CDS | 45.0% | |
| !! | TTTTTAGGCGTTTGCGAAGG+TGG | + | chr4_2:72768180-72768199 | Msa0620970:intron | 45.0% |
| ! | TGTGCTGCTATTGTGGATTC+AGG | + | chr4_2:72768204-72768223 | Msa0620970:CDS | 45.0% |
| TCAGGAACATCATTGCTTGC+TGG | + | chr4_2:72768222-72768241 | Msa0620970:CDS | 45.0% | |
| AACCATGCTATTGGAGCTGA+AGG | + | chr4_2:72768348-72768367 | Msa0620970:CDS | 45.0% | |
| ! | ATATGGGATCTCTTGGTAGC+AGG | + | chr4_2:72768420-72768439 | Msa0620970:CDS | 45.0% |
| ! | TATGGGATCTCTTGGTAGCA+GGG | + | chr4_2:72768421-72768440 | Msa0620970:CDS | 45.0% |
| AGAGCAACGACTACAAGTCA+GGG | - | chr4_2:72768484-72768503 | None:intergenic | 45.0% | |
| AAGAGCAACGACTACAAGTC+AGG | - | chr4_2:72768485-72768504 | None:intergenic | 45.0% | |
| !!! | ATTGATTTTCAGGTACGGCC+TGG | + | chr4_2:72768547-72768566 | Msa0620970:intron | 45.0% |
| ACTTGTGAACACACATCACC+AGG | - | chr4_2:72768568-72768587 | None:intergenic | 45.0% | |
| GGTGATGTGTGTTCACAAGT+TGG | + | chr4_2:72768568-72768587 | Msa0620970:CDS | 45.0% | |
| TTGGTTTATGTGGTGGCAAG+AGG | + | chr4_2:72768587-72768606 | Msa0620970:CDS | 45.0% | |
| TGGTTTATGTGGTGGCAAGA+GGG | + | chr4_2:72768588-72768607 | Msa0620970:CDS | 45.0% | |
| ! | GCAAGAGGGTACAATCTAAG+AGG | + | chr4_2:72768602-72768621 | Msa0620970:CDS | 45.0% |
| TCTTTGAATCCTCTGCAGCA+TGG | + | chr4_2:72768863-72768882 | Msa0620970:intron | 45.0% | |
| CTTTGAATCCTCTGCAGCAT+GGG | + | chr4_2:72768864-72768883 | Msa0620970:intron | 45.0% | |
| TTTGAATCCTCTGCAGCATG+GGG | + | chr4_2:72768865-72768884 | Msa0620970:intron | 45.0% | |
| GATGGTGACTGAAAAGGAAC+AGG | + | chr4_2:72768893-72768912 | Msa0620970:CDS | 45.0% | |
| CCAAATCACAAGCATCTGAC+AGG | - | chr4_2:72768955-72768974 | None:intergenic | 45.0% | |
| CCTGTCAGATGCTTGTGATT+TGG | + | chr4_2:72768952-72768971 | Msa0620970:CDS | 45.0% | |
| !! | TCTACTACCGACTCTCCATT+TGG | - | chr4_2:72769157-72769176 | None:intergenic | 45.0% |
| !! | ATGCTGCCCATCTTTTGGAA+AGG | - | chr4_2:72769485-72769504 | None:intergenic | 45.0% |
| ! | CTTTTGACATTCCTCCTCCA+AGG | + | chr4_2:72769692-72769711 | Msa0620970:CDS | 45.0% |
| TTTGACATTCCTCCTCCAAG+GGG | + | chr4_2:72769694-72769713 | Msa0620970:CDS | 45.0% | |
| CAGCTTCAGCAAAACCAAGT+TGG | - | chr4_2:72769898-72769917 | None:intergenic | 45.0% | |
| AGATTCACGCTATCCACGTG+GGG | - | chr4_2:72765663-72765682 | None:intergenic | 50.0% | |
| TCCTAACCGATCAGTAGGCA+AGG | + | chr4_2:72765917-72765936 | Msa0620970:intron | 50.0% | |
| TCCTTGCCTACTGATCGGTT+AGG | - | chr4_2:72765921-72765940 | None:intergenic | 50.0% | |
| AACCGATCAGTAGGCAAGGA+AGG | + | chr4_2:72765921-72765940 | Msa0620970:intron | 50.0% | |
| CACCTTCCTTGCCTACTGAT+CGG | - | chr4_2:72765926-72765945 | None:intergenic | 50.0% | |
| ! | TCAGTAGGCAAGGAAGGTGT+TGG | + | chr4_2:72765927-72765946 | Msa0620970:intron | 50.0% |
| TAGGGAAAATCTGCCAGGCA+GGG | - | chr4_2:72766355-72766374 | None:intergenic | 50.0% | |
| ATAGGGAAAATCTGCCAGGC+AGG | - | chr4_2:72766356-72766375 | None:intergenic | 50.0% | |
| ! | TGCCTGGCAGATTTTCCCTA+TGG | + | chr4_2:72766355-72766374 | Msa0620970:intron | 50.0% |
| GGCATCGTCGGATGATTTAC+TGG | - | chr4_2:72766573-72766592 | None:intergenic | 50.0% | |
| TTGCCTGCTACACCCATCAT+TGG | + | chr4_2:72766815-72766834 | Msa0620970:CDS | 50.0% | |
| !! | GTACCAATGATGGGTGTAGC+AGG | - | chr4_2:72766821-72766840 | None:intergenic | 50.0% |
| TTCATTGAGGCTACCCGTGA+AGG | + | chr4_2:72767194-72767213 | Msa0620970:CDS | 50.0% | |
| GGGTGGTGAGCTAATTCTTG+GGG | + | chr4_2:72767731-72767750 | Msa0620970:CDS | 50.0% | |
| GGTGGTGAGCTAATTCTTGG+GGG | + | chr4_2:72767732-72767751 | Msa0620970:CDS | 50.0% | |
| CACTCAAAAGGGCTATTGGC+AGG | + | chr4_2:72767800-72767819 | Msa0620970:CDS | 50.0% | |
| CTCCTTCAGCTCCAATAGCA+TGG | - | chr4_2:72768353-72768372 | None:intergenic | 50.0% | |
| ! | ATGGGATCTCTTGGTAGCAG+GGG | + | chr4_2:72768422-72768441 | Msa0620970:CDS | 50.0% |
| GAGAGCTTGCCAAGTCCAAA+TGG | + | chr4_2:72769139-72769158 | Msa0620970:CDS | 50.0% | |
| GCCAAGTCCAAATGGAGAGT+CGG | + | chr4_2:72769147-72769166 | Msa0620970:CDS | 50.0% | |
| ! | ACCGACTCTCCATTTGGACT+TGG | - | chr4_2:72769151-72769170 | None:intergenic | 50.0% |
| AAGCTGCCTAGTGAGACTTG+TGG | + | chr4_2:72769912-72769931 | Msa0620970:exon | 50.0% | |
| GGAAGGTCGTCCAGAAACAG+TGG | - | chr4_2:72765321-72765340 | None:intergenic | 55.0% | |
| TGCTATGTGGGGAGCAACGA+TGG | - | chr4_2:72766069-72766088 | None:intergenic | 55.0% | |
| CGCCATAGGGAAAATCTGCC+AGG | - | chr4_2:72766360-72766379 | None:intergenic | 55.0% | |
| ! | AGGTGGCTGTGCTGCTATTG+TGG | + | chr4_2:72768197-72768216 | Msa0620970:CDS | 55.0% |
| TCTCAATCCCCATGCTGCAG+AGG | - | chr4_2:72768875-72768894 | None:intergenic | 55.0% | |
| CTGCAGCATGGGGATTGAGA+TGG | + | chr4_2:72768875-72768894 | Msa0620970:intron | 55.0% | |
| TTTCGTCCTCAGTCCAGAGC+AGG | + | chr4_2:72769231-72769250 | Msa0620970:CDS | 55.0% | |
| ! | AGCTAACCTGCTCTGGACTG+AGG | - | chr4_2:72769240-72769259 | None:intergenic | 55.0% |
| ACATACCAGAGAGGACCCCT+TGG | - | chr4_2:72769712-72769731 | None:intergenic | 55.0% | |
| TACCAGAGAGGACCCCTTGG+AGG | - | chr4_2:72769709-72769728 | None:intergenic | 60.0% | |
| CAGAGAGGACCCCTTGGAGG+AGG | - | chr4_2:72769706-72769725 | None:intergenic | 65.0% | |
| CTCCTCCAAGGGGTCCTCTC+TGG | + | chr4_2:72769704-72769723 | Msa0620970:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 72765256 | 72770275 | 72765256 | ID=Msa0620970;Name=Msa0620970 |
| chr4_2 | mRNA | 72765256 | 72770275 | 72765256 | ID=Msa0620970-mRNA-1;Parent=Msa0620970;Name=Msa0620970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=170|1|1|1|0.85|0.73|15|284|508 |
| chr4_2 | exon | 72765256 | 72765416 | 72765256 | ID=Msa0620970-mRNA-1:exon:21722;Parent=Msa0620970-mRNA-1 |
| chr4_2 | exon | 72766365 | 72766730 | 72766365 | ID=Msa0620970-mRNA-1:exon:21723;Parent=Msa0620970-mRNA-1 |
| chr4_2 | exon | 72766814 | 72766874 | 72766814 | ID=Msa0620970-mRNA-1:exon:21724;Parent=Msa0620970-mRNA-1 |
| chr4_2 | exon | 72767000 | 72767094 | 72767000 | ID=Msa0620970-mRNA-1:exon:21725;Parent=Msa0620970-mRNA-1 |
| chr4_2 | exon | 72767191 | 72767303 | 72767191 | ID=Msa0620970-mRNA-1:exon:21726;Parent=Msa0620970-mRNA-1 |
| chr4_2 | exon | 72767653 | 72767821 | 72767653 | ID=Msa0620970-mRNA-1:exon:21727;Parent=Msa0620970-mRNA-1 |
| chr4_2 | exon | 72767913 | 72767952 | 72767913 | ID=Msa0620970-mRNA-1:exon:21728;Parent=Msa0620970-mRNA-1 |
| chr4_2 | exon | 72768187 | 72768251 | 72768187 | ID=Msa0620970-mRNA-1:exon:21729;Parent=Msa0620970-mRNA-1 |
| chr4_2 | exon | 72768330 | 72768443 | 72768330 | ID=Msa0620970-mRNA-1:exon:21730;Parent=Msa0620970-mRNA-1 |
| chr4_2 | exon | 72768559 | 72768623 | 72768559 | ID=Msa0620970-mRNA-1:exon:21731;Parent=Msa0620970-mRNA-1 |
| chr4_2 | exon | 72768881 | 72769034 | 72768881 | ID=Msa0620970-mRNA-1:exon:21732;Parent=Msa0620970-mRNA-1 |
| chr4_2 | exon | 72769133 | 72769252 | 72769133 | ID=Msa0620970-mRNA-1:exon:21733;Parent=Msa0620970-mRNA-1 |
| chr4_2 | exon | 72769637 | 72769725 | 72769637 | ID=Msa0620970-mRNA-1:exon:21734;Parent=Msa0620970-mRNA-1 |
| chr4_2 | exon | 72769838 | 72770175 | 72769838 | ID=Msa0620970-mRNA-1:exon:21735;Parent=Msa0620970-mRNA-1 |
| chr4_2 | exon | 72770245 | 72770275 | 72770245 | ID=Msa0620970-mRNA-1:exon:21736;Parent=Msa0620970-mRNA-1 |
| chr4_2 | five_prime_UTR | 72765256 | 72765416 | 72765256 | ID=Msa0620970-mRNA-1:five_prime_utr;Parent=Msa0620970-mRNA-1 |
| chr4_2 | five_prime_UTR | 72766365 | 72766373 | 72766365 | ID=Msa0620970-mRNA-1:five_prime_utr;Parent=Msa0620970-mRNA-1 |
| chr4_2 | CDS | 72766374 | 72766730 | 72766374 | ID=Msa0620970-mRNA-1:cds;Parent=Msa0620970-mRNA-1 |
| chr4_2 | CDS | 72766814 | 72766874 | 72766814 | ID=Msa0620970-mRNA-1:cds;Parent=Msa0620970-mRNA-1 |
| chr4_2 | CDS | 72767000 | 72767094 | 72767000 | ID=Msa0620970-mRNA-1:cds;Parent=Msa0620970-mRNA-1 |
| chr4_2 | CDS | 72767191 | 72767303 | 72767191 | ID=Msa0620970-mRNA-1:cds;Parent=Msa0620970-mRNA-1 |
| chr4_2 | CDS | 72767653 | 72767821 | 72767653 | ID=Msa0620970-mRNA-1:cds;Parent=Msa0620970-mRNA-1 |
| chr4_2 | CDS | 72767913 | 72767952 | 72767913 | ID=Msa0620970-mRNA-1:cds;Parent=Msa0620970-mRNA-1 |
| chr4_2 | CDS | 72768187 | 72768251 | 72768187 | ID=Msa0620970-mRNA-1:cds;Parent=Msa0620970-mRNA-1 |
| chr4_2 | CDS | 72768330 | 72768443 | 72768330 | ID=Msa0620970-mRNA-1:cds;Parent=Msa0620970-mRNA-1 |
| chr4_2 | CDS | 72768559 | 72768623 | 72768559 | ID=Msa0620970-mRNA-1:cds;Parent=Msa0620970-mRNA-1 |
| chr4_2 | CDS | 72768881 | 72769034 | 72768881 | ID=Msa0620970-mRNA-1:cds;Parent=Msa0620970-mRNA-1 |
| chr4_2 | CDS | 72769133 | 72769252 | 72769133 | ID=Msa0620970-mRNA-1:cds;Parent=Msa0620970-mRNA-1 |
| chr4_2 | CDS | 72769637 | 72769725 | 72769637 | ID=Msa0620970-mRNA-1:cds;Parent=Msa0620970-mRNA-1 |
| chr4_2 | CDS | 72769838 | 72769922 | 72769838 | ID=Msa0620970-mRNA-1:cds;Parent=Msa0620970-mRNA-1 |
| chr4_2 | three_prime_UTR | 72769923 | 72770175 | 72769923 | ID=Msa0620970-mRNA-1:three_prime_utr;Parent=Msa0620970-mRNA-1 |
| chr4_2 | three_prime_UTR | 72770245 | 72770275 | 72770245 | ID=Msa0620970-mRNA-1:three_prime_utr;Parent=Msa0620970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
