Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1376760 | XP_024638887.1 | 94.685 | 508 | 7 | 1 | 1 | 488 | 1 | 508 | 0.0 | 978 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1376760 | sp|P42211|ASPRX_ORYSJ | 57.647 | 510 | 180 | 5 | 1 | 488 | 1 | 496 | 0.0 | 607 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1376760 | A0A072VYH6 | 94.685 | 508 | 7 | 1 | 1 | 488 | 1 | 508 | 0.0 | 978 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0078750 | Msa1376760 | 0.840583 | 7.967941e-58 | -8.615850e-47 |
Msa1370340 | Msa1376760 | 0.829529 | 4.892773e-55 | -8.615850e-47 |
Msa1376760 | Msa1382160 | 0.831174 | 1.938890e-55 | -8.615850e-47 |
Msa1376760 | Msa1444740 | 0.817055 | 4.021043e-52 | -8.615850e-47 |
Msa0608710 | Msa1376760 | 0.814942 | 1.191624e-51 | -8.615850e-47 |
Msa0620970 | Msa1376760 | 0.908473 | 1.645853e-81 | -8.615850e-47 |
Msa0631990 | Msa1376760 | 0.804895 | 1.734213e-49 | -8.615850e-47 |
Msa0652810 | Msa1376760 | 0.817167 | 3.794411e-52 | -8.615850e-47 |
Msa0653490 | Msa1376760 | 0.807102 | 5.954776e-50 | -8.615850e-47 |
Msa0663920 | Msa1376760 | 0.821428 | 4.059287e-53 | -8.615850e-47 |
Msa0678820 | Msa1376760 | 0.805938 | 1.048040e-49 | -8.615850e-47 |
Msa0714340 | Msa1376760 | 0.805948 | 1.043230e-49 | -8.615850e-47 |
Msa0714380 | Msa1376760 | 0.814286 | 1.664944e-51 | -8.615850e-47 |
Msa0756310 | Msa1376760 | 0.805629 | 1.217083e-49 | -8.615850e-47 |
Msa0771720 | Msa1376760 | 0.810953 | 8.918016e-51 | -8.615850e-47 |
Msa0798860 | Msa1376760 | 0.820259 | 7.538413e-53 | -8.615850e-47 |
Msa0173480 | Msa1376760 | 0.921351 | 4.001169e-88 | -8.615850e-47 |
Msa0190250 | Msa1376760 | 0.818784 | 1.635800e-52 | -8.615850e-47 |
Msa0222340 | Msa1376760 | 0.801154 | 1.029166e-48 | -8.615850e-47 |
Msa0236630 | Msa1376760 | 0.828934 | 6.820005e-55 | -8.615850e-47 |
Msa1233890 | Msa1376760 | 0.808903 | 2.464124e-50 | -8.615850e-47 |
Msa1269940 | Msa1376760 | 0.805415 | 1.349774e-49 | -8.615850e-47 |
Msa1279210 | Msa1376760 | 0.823100 | 1.660767e-53 | -8.615850e-47 |
Msa1284710 | Msa1376760 | 0.814825 | 1.265060e-51 | -8.615850e-47 |
Msa1328700 | Msa1376760 | 0.821579 | 3.745793e-53 | -8.615850e-47 |
Msa0379640 | Msa1376760 | 0.819182 | 1.328128e-52 | -8.615850e-47 |
Msa0388840 | Msa1376760 | 0.803948 | 2.732117e-49 | -8.615850e-47 |
Msa0394340 | Msa1376760 | 0.804557 | 2.039742e-49 | -8.615850e-47 |
Msa0399340 | Msa1376760 | 0.810359 | 1.198563e-50 | -8.615850e-47 |
Msa0442200 | Msa1376760 | 0.805974 | 1.029954e-49 | -8.615850e-47 |
Msa0475580 | Msa1376760 | 0.805180 | 1.512051e-49 | -8.615850e-47 |
Msa0477080 | Msa1376760 | 0.801105 | 1.053248e-48 | -8.615850e-47 |
Msa1031810 | Msa1376760 | 0.802250 | 6.133330e-49 | -8.615850e-47 |
Msa1090260 | Msa1376760 | 0.812666 | 3.779562e-51 | -8.615850e-47 |
Msa0298610 | Msa1376760 | 0.838374 | 2.986859e-57 | -8.615850e-47 |
Msa0333550 | Msa1376760 | 0.801483 | 8.816783e-49 | -8.615850e-47 |
Msa0358730 | Msa1376760 | 0.808350 | 3.234349e-50 | -8.615850e-47 |
Msa1143270 | Msa1376760 | 0.820949 | 5.233208e-53 | -8.615850e-47 |
Msa1199560 | Msa1376760 | 0.817281 | 3.578074e-52 | -8.615850e-47 |
Msa0493630 | Msa1376760 | 0.807157 | 5.797538e-50 | -8.615850e-47 |
Msa0498230 | Msa1376760 | 0.806497 | 7.993347e-50 | -8.615850e-47 |
Msa0502100 | Msa1376760 | 0.818670 | 1.736241e-52 | -8.615850e-47 |
Msa0521430 | Msa1376760 | 0.803297 | 3.728934e-49 | -8.615850e-47 |
Msa0878880 | Msa1376760 | 0.803682 | 3.101984e-49 | -8.615850e-47 |
Msa0944550 | Msa1376760 | 0.823075 | 1.683389e-53 | -8.615850e-47 |
Msa0979100 | Msa1376760 | 0.805098 | 1.572895e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1376760 | MtrunA17_Chr1g0193211 | 94.685 | 508 | 7 | 1 | 1 | 488 | 1 | 508 | 0.0 | 978 |
Msa1376760 | MtrunA17_Chr7g0271351 | 75.246 | 509 | 100 | 3 | 1 | 488 | 1 | 504 | 0.0 | 800 |
Msa1376760 | MtrunA17_Chr4g0069631 | 50.980 | 510 | 215 | 5 | 1 | 488 | 1 | 497 | 0.0 | 549 |
Msa1376760 | MtrunA17_Chr4g0075181 | 53.831 | 522 | 204 | 7 | 1 | 488 | 1 | 519 | 0.0 | 542 |
Msa1376760 | MtrunA17_Chr2g0288851 | 55.319 | 517 | 195 | 6 | 1 | 488 | 1 | 510 | 0.0 | 539 |
Msa1376760 | MtrunA17_Chr2g0302421 | 50.197 | 508 | 222 | 6 | 6 | 488 | 1 | 502 | 0.0 | 526 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1376760 | AT1G11910.1 | 58.884 | 484 | 172 | 4 | 26 | 488 | 29 | 506 | 0.0 | 578 |
Msa1376760 | AT1G11910.2 | 58.884 | 484 | 172 | 4 | 26 | 488 | 40 | 517 | 0.0 | 578 |
Msa1376760 | AT1G62290.1 | 56.612 | 484 | 188 | 3 | 26 | 487 | 29 | 512 | 0.0 | 566 |
Msa1376760 | AT1G62290.2 | 56.612 | 484 | 188 | 3 | 26 | 487 | 29 | 512 | 0.0 | 566 |
Msa1376760 | AT4G04460.1 | 52.479 | 484 | 203 | 4 | 26 | 488 | 31 | 508 | 0.0 | 528 |
Msa1376760 | AT1G62290.5 | 55.240 | 458 | 183 | 3 | 26 | 461 | 29 | 486 | 0.0 | 524 |
Msa1376760 | AT4G04460.2 | 52.273 | 484 | 200 | 5 | 26 | 488 | 31 | 504 | 0.0 | 521 |
Msa1376760 | AT1G62290.6 | 54.206 | 428 | 174 | 3 | 26 | 431 | 29 | 456 | 2.73e-165 | 475 |
Msa1376760 | AT1G62290.4 | 54.206 | 428 | 174 | 3 | 26 | 431 | 29 | 456 | 2.73e-165 | 475 |
Msa1376760 | AT1G62290.3 | 53.728 | 389 | 158 | 3 | 26 | 392 | 29 | 417 | 4.98e-145 | 422 |
Msa1376760 | AT4G22050.1 | 37.247 | 247 | 131 | 5 | 69 | 293 | 30 | 274 | 3.72e-41 | 151 |
Msa1376760 | AT4G22050.1 | 33.571 | 140 | 68 | 7 | 354 | 488 | 234 | 353 | 1.14e-11 | 66.6 |
Msa1376760 | AT1G69100.1 | 36.220 | 254 | 131 | 10 | 77 | 302 | 39 | 289 | 3.28e-37 | 140 |
Msa1376760 | AT1G69100.2 | 36.220 | 254 | 131 | 10 | 77 | 302 | 47 | 297 | 3.52e-37 | 140 |
Find 134 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGGGTTGCTTTCTGTTTC+TGG | 0.027211 | tig0019826:+69880 | Msa1376760:CDS |
ATTACTTGGGCTTGGCTTTC+AGG | 0.101496 | tig0019826:+70740 | Msa1376760:CDS |
TATTTGAATGCACAATATTA+TGG | 0.213005 | tig0019826:+70101 | Msa1376760:CDS |
TGGGGATCCAAAAGCGAAAA+AGG | 0.245272 | tig0019826:+71200 | Msa1376760:CDS |
TTCTACCCCACCTTCACTTT+TGG | 0.252482 | tig0019826:+68896 | Msa1376760:five_prime_UTR |
AAGGAAATTGTTACTGAATA+TGG | 0.254211 | tig0019826:+71879 | Msa1376760:CDS |
ACTTTCGTTTGAGTTGATTC+TGG | 0.257963 | tig0019826:-72466 | None:intergenic |
CCTGTCAGATGCTTGTGATT+TGG | 0.258700 | tig0019826:+72441 | Msa1376760:CDS |
CTGAATATGGAGAGTTGATA+TGG | 0.273202 | tig0019826:+71892 | Msa1376760:CDS |
GCACGTATGTAACTACTTAA+TGG | 0.280619 | tig0019826:+73480 | Msa1376760:three_prime_UTR |
AGGAAAGAGTCCACTGTTTC+TGG | 0.287444 | tig0019826:+68809 | Msa1376760:five_prime_UTR |
ACCATTCTTAGTATATGTTT+TGG | 0.290296 | tig0019826:-70344 | None:intergenic |
GTGGGTTGCTTTCTGTTTCT+GGG | 0.300164 | tig0019826:+69881 | Msa1376760:CDS |
TATCACACTGTCTTTGACTA+TGG | 0.305502 | tig0019826:+73355 | Msa1376760:CDS |
AACCCAAAGGTTCGAACTTC+CGG | 0.323172 | tig0019826:-70174 | None:intergenic |
CTTCTTCCTTCTTTCTCCTA+TGG | 0.341567 | tig0019826:+69918 | Msa1376760:CDS |
ATAATCCTTCAAAGGTACTA+TGG | 0.366326 | tig0019826:-70081 | None:intergenic |
ATACCGGAAGTTCGAACCTT+TGG | 0.366601 | tig0019826:+70171 | Msa1376760:CDS |
TTCATTGGAGGTCTCTCAAC+AGG | 0.375201 | tig0019826:+71421 | Msa1376760:CDS |
TATGGATCTGGAGCAATATC+TGG | 0.380262 | tig0019826:+70510 | Msa1376760:CDS |
GGCATCGTCGGATGATTTAC+TGG | 0.385524 | tig0019826:-70060 | None:intergenic |
TGTGCTGCTATTGTGGATTC+AGG | 0.385643 | tig0019826:+71693 | Msa1376760:CDS |
ACTGAAATCAACCATGCTAT+TGG | 0.387536 | tig0019826:+71828 | Msa1376760:CDS |
TTTGTGCTGGCAAAGTTTGA+TGG | 0.391550 | tig0019826:+70717 | Msa1376760:CDS |
GCACAATATTATGGAGAGAT+TGG | 0.391737 | tig0019826:+70110 | Msa1376760:CDS |
GCAAAGTTTGATGGATTACT+TGG | 0.395124 | tig0019826:+70726 | Msa1376760:CDS |
TACCGGAAGTTCGAACCTTT+GGG | 0.402892 | tig0019826:+70172 | Msa1376760:CDS |
ATTGCAACTGTCTGTCTTAG+TGG | 0.405812 | tig0019826:+73150 | Msa1376760:CDS |
TTTGATGGATTACTTGGGCT+TGG | 0.408707 | tig0019826:+70732 | Msa1376760:CDS |
CTCCTCCAAGGGGTCCTCTC+TGG | 0.412726 | tig0019826:+73193 | Msa1376760:CDS |
CGATGCCATAGTACCTTTGA+AGG | 0.413136 | tig0019826:+70076 | Msa1376760:CDS |
TATTATGGAGAGATTGGAAT+TGG | 0.414971 | tig0019826:+70116 | Msa1376760:CDS |
AGTTCTGAGTGTAGAATGTA+AGG | 0.415661 | tig0019826:+71860 | Msa1376760:CDS |
ATATGGGATCTCTTGGTAGC+AGG | 0.416249 | tig0019826:+71909 | Msa1376760:CDS |
TTTCAAAAGCTAACCTGCTC+TGG | 0.419852 | tig0019826:-72733 | None:intergenic |
TCAGGAACATCATTGCTTGC+TGG | 0.420845 | tig0019826:+71711 | Msa1376760:CDS |
TCTACTACCGACTCTCCATT+TGG | 0.426333 | tig0019826:-72643 | None:intergenic |
AAGGGTGGTGAGCTAATTCT+TGG | 0.431483 | tig0019826:+71219 | Msa1376760:CDS |
CCGATAGTGAACGAAATGTT+TGG | 0.437728 | tig0019826:-72688 | None:intergenic |
GATGGTGACTGAAAAGGAAC+AGG | 0.445152 | tig0019826:+72382 | Msa1376760:CDS |
ACATCATGTAAAATAGCATA+TGG | 0.445708 | tig0019826:+70492 | Msa1376760:CDS |
AAATAAAGAAACGAGTGTAT+TGG | 0.447128 | tig0019826:+68751 | None:intergenic |
TGTTCACAAGTTGGTTTATG+TGG | 0.447600 | tig0019826:+72066 | Msa1376760:CDS |
TCTTTGCCTTGTACCAATGA+TGG | 0.454127 | tig0019826:-70318 | None:intergenic |
TTGCAACTGTCTGTCTTAGT+GGG | 0.456599 | tig0019826:+73151 | Msa1376760:CDS |
AGGAAGAAGTGAGCATGTTA+AGG | 0.461966 | tig0019826:-69904 | None:intergenic |
AGTCAAGATAATGTTAAACT+TGG | 0.466184 | tig0019826:+70540 | Msa1376760:CDS |
AGGTAGTATTTCCTTTGTGC+TGG | 0.466744 | tig0019826:+70704 | Msa1376760:CDS |
ATATGTCCCAGTCACTCAAA+AGG | 0.467120 | tig0019826:+71278 | Msa1376760:CDS |
TCCAAAACATATACTAAGAA+TGG | 0.470813 | tig0019826:+70343 | Msa1376760:CDS |
GTAGTTTATTACTAGTATGT+AGG | 0.472258 | tig0019826:+73423 | Msa1376760:three_prime_UTR |
CCAAACATTTCGTTCACTAT+CGG | 0.480158 | tig0019826:+72688 | Msa1376760:CDS |
ACTCTTTCCTGCTCGTACAA+TGG | 0.482508 | tig0019826:-68796 | None:intergenic |
TGTAAAATAGCATATGGATC+TGG | 0.485019 | tig0019826:+70498 | Msa1376760:CDS |
AGGTGGCTGTGCTGCTATTG+TGG | 0.487001 | tig0019826:+71686 | Msa1376760:CDS |
AAAGTCAAGCAGACCTGTGT+TGG | 0.487437 | tig0019826:+70019 | Msa1376760:CDS |
CAGTCACTCAAAAGGGCTAT+TGG | 0.490769 | tig0019826:+71286 | Msa1376760:CDS |
GTACCAATGATGGGTGTAGC+AGG | 0.494741 | tig0019826:-70308 | None:intergenic |
TTGCCTGCTACACCCATCAT+TGG | 0.494879 | tig0019826:+70305 | Msa1376760:CDS |
AGAGTTGATATGGGATCTCT+TGG | 0.497460 | tig0019826:+71902 | Msa1376760:CDS |
GACTATGGAAATCTCCAACT+TGG | 0.497542 | tig0019826:+73370 | Msa1376760:CDS |
TTTAATGTCATATTTGATAC+CGG | 0.504218 | tig0019826:+70155 | Msa1376760:CDS |
CTTTGCCTTGTACCAATGAT+GGG | 0.506920 | tig0019826:-70317 | None:intergenic |
CAAAGGAAATACTACCTTCA+CGG | 0.507736 | tig0019826:-70698 | None:intergenic |
CTATGGCGAACAAGTATTTG+TGG | 0.507847 | tig0019826:+69862 | Msa1376760:exon |
TATGGCGAACAAGTATTTGT+GGG | 0.510711 | tig0019826:+69863 | Msa1376760:exon |
TTTCGTCCTCAGTCCAGAGC+AGG | 0.513352 | tig0019826:+72720 | Msa1376760:CDS |
ATATGACATTAAATGTCTGC+GGG | 0.514798 | tig0019826:-70145 | None:intergenic |
CACTCAAAAGGGCTATTGGC+AGG | 0.514804 | tig0019826:+71290 | Msa1376760:CDS |
AGGGTGGTGAGCTAATTCTT+GGG | 0.521468 | tig0019826:+71220 | Msa1376760:CDS |
CCAAATCACAAGCATCTGAC+AGG | 0.525516 | tig0019826:-72441 | None:intergenic |
AACCATGCTATTGGAGCTGA+AGG | 0.532160 | tig0019826:+71837 | Msa1376760:CDS |
ACCGACTCTCCATTTGGACT+TGG | 0.532497 | tig0019826:-72637 | None:intergenic |
GTTGATCCAAATCACTTCAA+AGG | 0.533108 | tig0019826:+71246 | Msa1376760:CDS |
AAAGGAAATACTACCTTCAC+GGG | 0.535086 | tig0019826:-70697 | None:intergenic |
GGTGATGTGTGTTCACAAGT+TGG | 0.536807 | tig0019826:+72057 | Msa1376760:CDS |
ACAAAATCCATTGTACGAGC+AGG | 0.537967 | tig0019826:+68789 | Msa1376760:five_prime_UTR |
AAGTCAAGCAGACCTGTGTT+GGG | 0.541826 | tig0019826:+70020 | Msa1376760:CDS |
CACAAATACTTGTTCGCCAT+AGG | 0.542130 | tig0019826:-69861 | None:intergenic |
ATAAATCCATAGGAGAAAGA+AGG | 0.545243 | tig0019826:-69924 | None:intergenic |
TTCATTGAGGCTACCCGTGA+AGG | 0.546701 | tig0019826:+70684 | Msa1376760:CDS |
CAAAGTTTGATGGATTACTT+GGG | 0.547133 | tig0019826:+70727 | Msa1376760:CDS |
AACACATAAACAACAAAAGT+AGG | 0.547843 | tig0019826:-68840 | None:intergenic |
TGAATATGGAGAGTTGATAT+GGG | 0.547882 | tig0019826:+71893 | Msa1376760:CDS |
AGCATACCAAAAGTGAAGGT+GGG | 0.548644 | tig0019826:-68902 | None:intergenic |
ACAAATACTTGTTCGCCATA+GGG | 0.554513 | tig0019826:-69860 | None:intergenic |
CAGAGAGGACCCCTTGGAGG+AGG | 0.556555 | tig0019826:-73192 | None:intergenic |
TATGTCCCAGTCACTCAAAA+GGG | 0.557674 | tig0019826:+71279 | Msa1376760:CDS |
CGATGTTGTTGTCAAGGATG+TGG | 0.559094 | tig0019826:+70563 | Msa1376760:CDS |
TTGGTTTATGTGGTGGCAAG+AGG | 0.559110 | tig0019826:+72076 | Msa1376760:CDS |
CTACACCCATCATTGGTACA+AGG | 0.560382 | tig0019826:+70312 | Msa1376760:CDS |
CAGCTTCAGCAAAACCAAGT+TGG | 0.561265 | tig0019826:-73384 | None:intergenic |
GATTGAGATGGTGACTGAAA+AGG | 0.563634 | tig0019826:+72376 | Msa1376760:CDS |
GAGAGCTTGCCAAGTCCAAA+TGG | 0.564520 | tig0019826:+72628 | Msa1376760:CDS |
GCAAGAGGGTACAATCTAAG+AGG | 0.567144 | tig0019826:+72091 | Msa1376760:CDS |
ACATACCAGAGAGGACCCCT+TGG | 0.568366 | tig0019826:-73198 | None:intergenic |
GCATTCAAATAATCCTTCAA+AGG | 0.571708 | tig0019826:-70089 | None:intergenic |
ACTTGTGAACACACATCACC+AGG | 0.573452 | tig0019826:-72054 | None:intergenic |
GGGTGGTGAGCTAATTCTTG+GGG | 0.575026 | tig0019826:+71221 | Msa1376760:CDS |
TATGGGATCTCTTGGTAGCA+GGG | 0.575997 | tig0019826:+71910 | Msa1376760:CDS |
TACCAGAGAGGACCCCTTGG+AGG | 0.578063 | tig0019826:-73195 | None:intergenic |
CTCCTTCAGCTCCAATAGCA+TGG | 0.581282 | tig0019826:-71839 | None:intergenic |
TAGCATTAGAGCTGCTAGGA+TGG | 0.582888 | tig0019826:+69983 | Msa1376760:CDS |
CAAAGGTACTATGGCATCGT+CGG | 0.583586 | tig0019826:-70072 | None:intergenic |
AATATGACATTAAATGTCTG+CGG | 0.583626 | tig0019826:-70146 | None:intergenic |
ATGTAACTACTTAATGGTGC+AGG | 0.586719 | tig0019826:+73486 | Msa1376760:three_prime_UTR |
ATACTTTAATACAACATACA+TGG | 0.587797 | tig0019826:-73602 | None:intergenic |
GAAACTGTAGGATTTCATTG+AGG | 0.588396 | tig0019826:+70671 | Msa1376760:intron |
AAGCATACCAAAAGTGAAGG+TGG | 0.598100 | tig0019826:-68903 | None:intergenic |
TGGTTTATGTGGTGGCAAGA+GGG | 0.598763 | tig0019826:+72077 | Msa1376760:CDS |
ACTTGGCGATGTTGTTGTCA+AGG | 0.601776 | tig0019826:+70557 | Msa1376760:CDS |
AAACTACCACAAGTCTCACT+AGG | 0.604215 | tig0019826:-73407 | None:intergenic |
GGAAAGCATACCAAAAGTGA+AGG | 0.608581 | tig0019826:-68906 | None:intergenic |
GCCAAGTCCAAATGGAGAGT+CGG | 0.611187 | tig0019826:+72636 | Msa1376760:CDS |
GCATACCAAAAGTGAAGGTG+GGG | 0.611673 | tig0019826:-68901 | None:intergenic |
ATGGGATCTCTTGGTAGCAG+GGG | 0.615385 | tig0019826:+71911 | Msa1376760:CDS |
CATAAACAACAAAAGTAGGA+AGG | 0.615535 | tig0019826:-68836 | None:intergenic |
TTTGACATTCCTCCTCCAAG+GGG | 0.621730 | tig0019826:+73183 | Msa1376760:CDS |
TTGATAGCATTAGAGCTGCT+AGG | 0.621778 | tig0019826:+69979 | Msa1376760:CDS |
TCACAAGTTGGTTTATGTGG+TGG | 0.628952 | tig0019826:+72069 | Msa1376760:CDS |
AACTACATGATACTTTAACA+TGG | 0.631393 | tig0019826:-73745 | None:intergenic |
CTGCAGCATGGGGATTGAGA+TGG | 0.633556 | tig0019826:+72364 | Msa1376760:intron |
ATCAAACTTTGCCAGCACAA+AGG | 0.640448 | tig0019826:-70715 | None:intergenic |
AGCTAACCTGCTCTGGACTG+AGG | 0.651008 | tig0019826:-72726 | None:intergenic |
TGATCATATGCACCCAACAC+AGG | 0.654844 | tig0019826:-70032 | None:intergenic |
GGAAGGTCGTCCAGAAACAG+TGG | 0.656322 | tig0019826:-68819 | None:intergenic |
ATGACATTAAATGTCTGCGG+GGG | 0.693826 | tig0019826:-70143 | None:intergenic |
ATGGTGACTGAAAAGGAACA+GGG | 0.704689 | tig0019826:+72383 | Msa1376760:CDS |
TATGACATTAAATGTCTGCG+GGG | 0.719171 | tig0019826:-70144 | None:intergenic |
ACTCAAACGAAAGTCAACCA+AGG | 0.720996 | tig0019826:+72475 | Msa1376760:CDS |
GGTGGTGAGCTAATTCTTGG+GGG | 0.731770 | tig0019826:+71222 | Msa1376760:CDS |
AAGCTGCCTAGTGAGACTTG+TGG | 0.732793 | tig0019826:+73401 | Msa1376760:exon |
ACTTTGATGATGGAACCCAA+AGG | 0.766571 | tig0019826:-70187 | None:intergenic |
GTAAGAGAAACATACCAGAG+AGG | 0.774024 | tig0019826:-73207 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAGTCTTTATATTTATTTA+TGG | + | tig0019826:69200-69219 | Msa1376760:intron | 10.0% |
!! | AGATTAAAATTGGAAAATAA+AGG | - | tig0019826:68930-68949 | None:intergenic | 15.0% |
!! | AAAAGATTGAAGATTAAAAT+TGG | - | tig0019826:68940-68959 | None:intergenic | 15.0% |
!! | AATGTAAAAAATAGACATTA+AGG | + | tig0019826:69634-69653 | Msa1376760:intron | 15.0% |
!!! | TTACTACTTTTATGTAAATT+TGG | + | tig0019826:69779-69798 | Msa1376760:intron | 15.0% |
!!! | TACTACTTTTATGTAAATTT+GGG | + | tig0019826:69780-69799 | Msa1376760:intron | 15.0% |
!! | ATTAATGTATAATTCAAACA+TGG | - | tig0019826:70888-70907 | None:intergenic | 15.0% |
!!! | TGTGTATATTTGTATATTTT+TGG | + | tig0019826:71593-71612 | Msa1376760:intron | 15.0% |
!!! | AACATGTTGATATTATTTTT+AGG | + | tig0019826:71654-71673 | Msa1376760:intron | 15.0% |
!! | AAATTGGTTGAAATTTAAAA+GGG | + | tig0019826:73699-73718 | Msa1376760:intron | 15.0% |
!! | TATCATATAATTTATGCTTC+AGG | + | tig0019826:68991-69010 | Msa1376760:intron | 20.0% |
!! | ATACTTATAAGATGTGATTT+AGG | + | tig0019826:69329-69348 | Msa1376760:intron | 20.0% |
!! | TTGAAACGAATAATAAAACA+AGG | - | tig0019826:69690-69709 | None:intergenic | 20.0% |
!! | TTTACATAAAAGTAGTAATG+AGG | - | tig0019826:69777-69796 | None:intergenic | 20.0% |
!!! | ATCAATTTTCATAAATCCAT+AGG | - | tig0019826:69937-69956 | None:intergenic | 20.0% |
!! | TATTTGAATGCACAATATTA+TGG | + | tig0019826:70101-70120 | Msa1376760:CDS | 20.0% |
!! | TTTAATGTCATATTTGATAC+CGG | + | tig0019826:70155-70174 | Msa1376760:CDS | 20.0% |
!!! | AAACAAAATTTAGTTTGATC+AGG | + | tig0019826:71319-71338 | Msa1376760:intron | 20.0% |
!! | ATAGTGAATACTGAAAAATA+AGG | + | tig0019826:71481-71500 | Msa1376760:intron | 20.0% |
!! | TAGTGAATACTGAAAAATAA+GGG | + | tig0019826:71482-71501 | Msa1376760:intron | 20.0% |
!! | AGCTATGATTGAATAATATA+TGG | - | tig0019826:71762-71781 | None:intergenic | 20.0% |
!! | AATCAATATTAAGCTCATTT+AGG | - | tig0019826:72023-72042 | None:intergenic | 20.0% |
!!! | TTAATATTGATTTTCAGGTA+CGG | + | tig0019826:72031-72050 | Msa1376760:intron | 20.0% |
!! | ATCGAAATACAATGAATTAA+AGG | - | tig0019826:72181-72200 | None:intergenic | 20.0% |
!! | TTAATTCATTGTATTTCGAT+TGG | + | tig0019826:72181-72200 | Msa1376760:intron | 20.0% |
!!! | TGTGAATATTTCAGATTTTT+AGG | + | tig0019826:72861-72880 | Msa1376760:intron | 20.0% |
!! | TTGATCTATAGTATATTTGT+TGG | + | tig0019826:73076-73095 | Msa1376760:intron | 20.0% |
!!! | TTTCAGTATATTTTGAAAAC+TGG | + | tig0019826:73120-73139 | Msa1376760:intron | 20.0% |
!! | ATACTTTAATACAACATACA+TGG | - | tig0019826:73605-73624 | None:intergenic | 20.0% |
!! | GAAATTGGTTGAAATTTAAA+AGG | + | tig0019826:73698-73717 | Msa1376760:intron | 20.0% |
!! | AATTGGTTGAAATTTAAAAG+GGG | + | tig0019826:73700-73719 | Msa1376760:intron | 20.0% |
!!! | TACAATGGATTTTGTATACT+TGG | - | tig0019826:68784-68803 | None:intergenic | 25.0% |
! | AACACATAAACAACAAAAGT+AGG | - | tig0019826:68843-68862 | None:intergenic | 25.0% |
! | ACTGAAAAGAAAAAGAATCA+TGG | - | tig0019826:69122-69141 | None:intergenic | 25.0% |
!!! | CTCAAAAGCATTTAGTATAT+GGG | - | tig0019826:69508-69527 | None:intergenic | 25.0% |
!!! | ACTCAAAAGCATTTAGTATA+TGG | - | tig0019826:69509-69528 | None:intergenic | 25.0% |
! | CGAATAATAAAACAAGGAAA+TGG | - | tig0019826:69684-69703 | None:intergenic | 25.0% |
! | TTTATGTAAATTTGGGAGTT+TGG | + | tig0019826:69787-69806 | Msa1376760:intron | 25.0% |
! | AATATGACATTAAATGTCTG+CGG | - | tig0019826:70149-70168 | None:intergenic | 25.0% |
! | TCCAAAACATATACTAAGAA+TGG | + | tig0019826:70343-70362 | Msa1376760:CDS | 25.0% |
!! | ACCATTCTTAGTATATGTTT+TGG | - | tig0019826:70347-70366 | None:intergenic | 25.0% |
! | TTACTCATATTCATTTGTAG+TGG | + | tig0019826:70382-70401 | Msa1376760:intron | 25.0% |
! | ACATCATGTAAAATAGCATA+TGG | + | tig0019826:70492-70511 | Msa1376760:CDS | 25.0% |
! | AGTCAAGATAATGTTAAACT+TGG | + | tig0019826:70540-70559 | Msa1376760:CDS | 25.0% |
!! | AGTTTTTATACAGCAAATCT+TGG | + | tig0019826:70631-70650 | Msa1376760:intron | 25.0% |
! | TTGCATGTCAGAATTAAATA+TGG | + | tig0019826:70835-70854 | Msa1376760:intron | 25.0% |
! | TCTGTTATGTCCATTAATTT+AGG | + | tig0019826:70862-70881 | Msa1376760:intron | 25.0% |
!! | CTTCATTTTATCTCTTGTTA+TGG | - | tig0019826:70954-70973 | None:intergenic | 25.0% |
! | TTCAAATGTGTAGTTTAATG+CGG | + | tig0019826:71349-71368 | Msa1376760:intron | 25.0% |
!! | TATACCTTTTCAGATTGAAA+TGG | + | tig0019826:71390-71409 | Msa1376760:intron | 25.0% |
!! | ATACCTTTTCAGATTGAAAT+GGG | + | tig0019826:71391-71410 | Msa1376760:intron | 25.0% |
! | ACTATCTTATTGTTGAAGAA+CGG | - | tig0019826:71455-71474 | None:intergenic | 25.0% |
! | AAAATAAGGGAGTAATTTAG+TGG | + | tig0019826:71495-71514 | Msa1376760:intron | 25.0% |
!!! | AAAGGTTTTAAGATATGGTA+TGG | + | tig0019826:71521-71540 | Msa1376760:intron | 25.0% |
!!! | CATTTATACTTTTTGTTGAC+CGG | + | tig0019826:71785-71804 | Msa1376760:intron | 25.0% |
! | AAGGAAATTGTTACTGAATA+TGG | + | tig0019826:71879-71898 | Msa1376760:CDS | 25.0% |
!!! | TGAGCTTAATATTGATTTTC+AGG | + | tig0019826:72026-72045 | Msa1376760:intron | 25.0% |
!!! | TTAGTTTCTTTTTTTGTCAC+TGG | + | tig0019826:72262-72281 | Msa1376760:intron | 25.0% |
!!! | TAGTTTCTTTTTTTGTCACT+GGG | + | tig0019826:72263-72282 | Msa1376760:intron | 25.0% |
!! | GTAGTTGAATATTTTATCCT+TGG | - | tig0019826:72495-72514 | None:intergenic | 25.0% |
! | ATAATTCGAAACATTAACTC+AGG | - | tig0019826:72557-72576 | None:intergenic | 25.0% |
! | AAAATACCTTTCCAAAAGAT+GGG | + | tig0019826:72965-72984 | Msa1376760:intron | 25.0% |
!!! | TATATTTTGAAAACTGGAGA+AGG | + | tig0019826:73126-73145 | Msa1376760:CDS | 25.0% |
!!! | AGCAAGATTTATTTTAAGCA+AGG | - | tig0019826:73278-73297 | None:intergenic | 25.0% |
! | GTAGTTTATTACTAGTATGT+AGG | + | tig0019826:73423-73442 | Msa1376760:three_prime_UTR | 25.0% |
! | ATATCATGTATCCATGTTTA+AGG | + | tig0019826:73648-73667 | Msa1376760:intron | 25.0% |
CATAAACAACAAAAGTAGGA+AGG | - | tig0019826:68839-68858 | None:intergenic | 30.0% | |
AGAAGCAACATGAAAATATG+TGG | - | tig0019826:69090-69109 | None:intergenic | 30.0% | |
!! | GTTAGTGATTAGTCTTACAT+CGG | + | tig0019826:69465-69484 | Msa1376760:intron | 30.0% |
ATAAATCCATAGGAGAAAGA+AGG | - | tig0019826:69927-69946 | None:intergenic | 30.0% | |
!! | ATAATCCTTCAAAGGTACTA+TGG | - | tig0019826:70084-70103 | None:intergenic | 30.0% |
GCATTCAAATAATCCTTCAA+AGG | - | tig0019826:70092-70111 | None:intergenic | 30.0% | |
TATTATGGAGAGATTGGAAT+TGG | + | tig0019826:70116-70135 | Msa1376760:CDS | 30.0% | |
ATATGACATTAAATGTCTGC+GGG | - | tig0019826:70148-70167 | None:intergenic | 30.0% | |
GAAAAATAGCACTTTGATGA+TGG | - | tig0019826:70200-70219 | None:intergenic | 30.0% | |
GAATATGAGTAATGAGAAGA+TGG | - | tig0019826:70374-70393 | None:intergenic | 30.0% | |
GGACATTAGAACGTATTAAA+TGG | - | tig0019826:70450-70469 | None:intergenic | 30.0% | |
CCTGAATTGACAAGTAAAAA+AGG | - | tig0019826:70471-70490 | None:intergenic | 30.0% | |
!!! | CCTTTTTTACTTGTCAATTC+AGG | + | tig0019826:70468-70487 | Msa1376760:intron | 30.0% |
TGTAAAATAGCATATGGATC+TGG | + | tig0019826:70498-70517 | Msa1376760:CDS | 30.0% | |
! | TTTTATACAGCAAATCTTGG+AGG | + | tig0019826:70634-70653 | Msa1376760:intron | 30.0% |
TATATTGTCCTTGAAACTGT+AGG | + | tig0019826:70659-70678 | Msa1376760:intron | 30.0% | |
AATGAAATCCTACAGTTTCA+AGG | - | tig0019826:70670-70689 | None:intergenic | 30.0% | |
!! | CAAAGTTTGATGGATTACTT+GGG | + | tig0019826:70727-70746 | Msa1376760:CDS | 30.0% |
TCAGATGCAAATGAAATAAC+AGG | - | tig0019826:70815-70834 | None:intergenic | 30.0% | |
TCAAACATGGCCTAAATTAA+TGG | - | tig0019826:70875-70894 | None:intergenic | 30.0% | |
CCTATACATAAGCACTTATT+TGG | - | tig0019826:70925-70944 | None:intergenic | 30.0% | |
CCAAATAAGTGCTTATGTAT+AGG | + | tig0019826:70922-70941 | Msa1376760:intron | 30.0% | |
TGTATATCCTAGAGAACTTA+TGG | + | tig0019826:70986-71005 | Msa1376760:intron | 30.0% | |
CTTATTTCCATAAGTTCTCT+AGG | - | tig0019826:70996-71015 | None:intergenic | 30.0% | |
!! | GATGTATAATGGATCACTAA+AGG | - | tig0019826:71119-71138 | None:intergenic | 30.0% |
TTTGTACCTGTGATGTATAA+TGG | - | tig0019826:71130-71149 | None:intergenic | 30.0% | |
TATACATCACAGGTACAAAA+TGG | + | tig0019826:71131-71150 | Msa1376760:intron | 30.0% | |
!!! | TGTTTTCCTTTGAAGTGATT+TGG | - | tig0019826:71255-71274 | None:intergenic | 30.0% |
!!! | GGTTGAAAGGTTTTAAGATA+TGG | + | tig0019826:71516-71535 | Msa1376760:intron | 30.0% |
ATACACATTGTACATATGAG+AGG | - | tig0019826:71580-71599 | None:intergenic | 30.0% | |
TTACAAAGTGCATCTAATTG+TGG | + | tig0019826:71631-71650 | Msa1376760:intron | 30.0% | |
AAGATGTAAGTACATACAGT+TGG | - | tig0019826:71738-71757 | None:intergenic | 30.0% | |
!! | TGAATATGGAGAGTTGATAT+GGG | + | tig0019826:71893-71912 | Msa1376760:CDS | 30.0% |
! | TTAAGCTCATTTAGGTTCAA+AGG | - | tig0019826:72015-72034 | None:intergenic | 30.0% |
TGGTAATAATTTGAAGATGC+TGG | + | tig0019826:72201-72220 | Msa1376760:intron | 30.0% | |
CAGTGATTTATACTCTTCAT+TGG | + | tig0019826:72230-72249 | Msa1376760:intron | 30.0% | |
! | ATTGCAATGCTACAAGATTT+TGG | + | tig0019826:72309-72328 | Msa1376760:intron | 30.0% |
GAATTATCCTATTGCTTTGA+TGG | + | tig0019826:72570-72589 | Msa1376760:intron | 30.0% | |
AATCAATCCATCAAAGCAAT+AGG | - | tig0019826:72580-72599 | None:intergenic | 30.0% | |
!!! | TTGCTTTGATGGATTGATTT+TGG | + | tig0019826:72581-72600 | Msa1376760:intron | 30.0% |
!!! | CATCTTTTGGAAAGGTATTT+TGG | - | tig0019826:72966-72985 | None:intergenic | 30.0% |
CAAAATACCTTTCCAAAAGA+TGG | + | tig0019826:72964-72983 | Msa1376760:intron | 30.0% | |
TTACTCATATCTACATCCAA+AGG | + | tig0019826:73033-73052 | Msa1376760:intron | 30.0% | |
! | TTGTCCTTTTTCTTTTCTGA+AGG | + | tig0019826:73305-73324 | Msa1376760:intron | 30.0% |
GAATCCTTCAGAAAAGAAAA+AGG | - | tig0019826:73312-73331 | None:intergenic | 30.0% | |
!! | TTTCTTTTCTGAAGGATTCT+TGG | + | tig0019826:73313-73332 | Msa1376760:intron | 30.0% |
ATGTACATGATCCTTAAACA+TGG | - | tig0019826:73662-73681 | None:intergenic | 30.0% | |
TAACATGGATACATAATGCT+TGG | - | tig0019826:73733-73752 | None:intergenic | 30.0% | |
!!! | TTTTTTGAATATTCCCCACG+TGG | + | tig0019826:69153-69172 | Msa1376760:intron | 35.0% |
TTAAAGTCAGCAACAATCGA+AGG | - | tig0019826:69381-69400 | None:intergenic | 35.0% | |
!! | AATGCTTTTGAGTGAAGATG+TGG | + | tig0019826:69516-69535 | Msa1376760:intron | 35.0% |
TTTACAAACGTCAACGAAGT+TGG | + | tig0019826:69745-69764 | Msa1376760:intron | 35.0% | |
AAGAAGAAAGTAAGTGAAGG+TGG | - | tig0019826:69821-69840 | None:intergenic | 35.0% | |
GGTAAGAAGAAAGTAAGTGA+AGG | - | tig0019826:69824-69843 | None:intergenic | 35.0% | |
ACAAATACTTGTTCGCCATA+GGG | - | tig0019826:69863-69882 | None:intergenic | 35.0% | |
TATGGCGAACAAGTATTTGT+GGG | + | tig0019826:69863-69882 | Msa1376760:exon | 35.0% | |
GCACAATATTATGGAGAGAT+TGG | + | tig0019826:70110-70129 | Msa1376760:CDS | 35.0% | |
TATGACATTAAATGTCTGCG+GGG | - | tig0019826:70147-70166 | None:intergenic | 35.0% | |
TACACTTTGCGTGATTTCAT+CGG | - | tig0019826:70408-70427 | None:intergenic | 35.0% | |
GAAACTGTAGGATTTCATTG+AGG | + | tig0019826:70671-70690 | Msa1376760:intron | 35.0% | |
AAAGGAAATACTACCTTCAC+GGG | - | tig0019826:70700-70719 | None:intergenic | 35.0% | |
CAAAGGAAATACTACCTTCA+CGG | - | tig0019826:70701-70720 | None:intergenic | 35.0% | |
!! | GCAAAGTTTGATGGATTACT+TGG | + | tig0019826:70726-70745 | Msa1376760:CDS | 35.0% |
CACTAAAGGTCTGTTTGAAT+TGG | - | tig0019826:71105-71124 | None:intergenic | 35.0% | |
AGTGATCCATTATACATCAC+AGG | + | tig0019826:71121-71140 | Msa1376760:intron | 35.0% | |
!!! | TGTTCTCTTTTTGGCTCAAT+GGG | + | tig0019826:71181-71200 | Msa1376760:CDS | 35.0% |
GTTGATCCAAATCACTTCAA+AGG | + | tig0019826:71246-71265 | Msa1376760:CDS | 35.0% | |
GGAGTAATTTAGTGGTTGAA+AGG | + | tig0019826:71503-71522 | Msa1376760:intron | 35.0% | |
!!! | TTATTTTTAGGCGTTTGCGA+AGG | + | tig0019826:71666-71685 | Msa1376760:intron | 35.0% |
! | ACAACAGTCTGAAATTCAAC+CGG | - | tig0019826:71807-71826 | None:intergenic | 35.0% |
ACTGAAATCAACCATGCTAT+TGG | + | tig0019826:71828-71847 | Msa1376760:CDS | 35.0% | |
!! | AGTTCTGAGTGTAGAATGTA+AGG | + | tig0019826:71860-71879 | Msa1376760:CDS | 35.0% |
!! | CTGAATATGGAGAGTTGATA+TGG | + | tig0019826:71892-71911 | Msa1376760:CDS | 35.0% |
!! | TGTTCACAAGTTGGTTTATG+TGG | + | tig0019826:72066-72085 | Msa1376760:CDS | 35.0% |
!! | ACTTTCGTTTGAGTTGATTC+TGG | - | tig0019826:72469-72488 | None:intergenic | 35.0% |
CCAAACATTTCGTTCACTAT+CGG | + | tig0019826:72688-72707 | Msa1376760:CDS | 35.0% | |
!! | ATCAAGAGTAAGTTAGCCTT+TGG | - | tig0019826:73052-73071 | None:intergenic | 35.0% |
!! | TTCTTGGCGATGTTTTTATG+AGG | + | tig0019826:73329-73348 | Msa1376760:CDS | 35.0% |
!! | TCTTGGCGATGTTTTTATGA+GGG | + | tig0019826:73330-73349 | Msa1376760:CDS | 35.0% |
TATCACACTGTCTTTGACTA+TGG | + | tig0019826:73355-73374 | Msa1376760:CDS | 35.0% | |
GCACGTATGTAACTACTTAA+TGG | + | tig0019826:73480-73499 | Msa1376760:three_prime_UTR | 35.0% | |
ATGTAACTACTTAATGGTGC+AGG | + | tig0019826:73486-73505 | Msa1376760:three_prime_UTR | 35.0% | |
CTCTTTCAACACACTGAAAT+TGG | + | tig0019826:73683-73702 | Msa1376760:intron | 35.0% | |
ACAAAATCCATTGTACGAGC+AGG | + | tig0019826:68789-68808 | Msa1376760:five_prime_UTR | 40.0% | |
AGCATACCAAAAGTGAAGGT+GGG | - | tig0019826:68905-68924 | None:intergenic | 40.0% | |
AAGCATACCAAAAGTGAAGG+TGG | - | tig0019826:68906-68925 | None:intergenic | 40.0% | |
! | GGAAAGCATACCAAAAGTGA+AGG | - | tig0019826:68909-68928 | None:intergenic | 40.0% |
!! | TTCTGGTTTGTTGATGGTCT+TGG | + | tig0019826:69541-69560 | Msa1376760:intron | 40.0% |
CACAAATACTTGTTCGCCAT+AGG | - | tig0019826:69864-69883 | None:intergenic | 40.0% | |
CTATGGCGAACAAGTATTTG+TGG | + | tig0019826:69862-69881 | Msa1376760:exon | 40.0% | |
AGGAAGAAGTGAGCATGTTA+AGG | - | tig0019826:69907-69926 | None:intergenic | 40.0% | |
CTTCTTCCTTCTTTCTCCTA+TGG | + | tig0019826:69918-69937 | Msa1376760:CDS | 40.0% | |
! | TTGATAGCATTAGAGCTGCT+AGG | + | tig0019826:69979-69998 | Msa1376760:CDS | 40.0% |
ATGACATTAAATGTCTGCGG+GGG | - | tig0019826:70146-70165 | None:intergenic | 40.0% | |
!! | ACTTTGATGATGGAACCCAA+AGG | - | tig0019826:70190-70209 | None:intergenic | 40.0% |
CTTTGCCTTGTACCAATGAT+GGG | - | tig0019826:70320-70339 | None:intergenic | 40.0% | |
TCTTTGCCTTGTACCAATGA+TGG | - | tig0019826:70321-70340 | None:intergenic | 40.0% | |
! | TATGGATCTGGAGCAATATC+TGG | + | tig0019826:70510-70529 | Msa1376760:CDS | 40.0% |
AGGTAGTATTTCCTTTGTGC+TGG | + | tig0019826:70704-70723 | Msa1376760:CDS | 40.0% | |
ATCAAACTTTGCCAGCACAA+AGG | - | tig0019826:70718-70737 | None:intergenic | 40.0% | |
! | TTTGTGCTGGCAAAGTTTGA+TGG | + | tig0019826:70717-70736 | Msa1376760:CDS | 40.0% |
!! | TTTGATGGATTACTTGGGCT+TGG | + | tig0019826:70732-70751 | Msa1376760:CDS | 40.0% |
TTGAAAATGCTGTGCCAGTA+TGG | + | tig0019826:70772-70791 | Msa1376760:intron | 40.0% | |
CGTCGAAAAACATACCATAC+TGG | - | tig0019826:70789-70808 | None:intergenic | 40.0% | |
ACATCACAGGTACAAAATGG+TGG | + | tig0019826:71134-71153 | Msa1376760:intron | 40.0% | |
GCAAGATCTTGTAAATGAGC+AGG | + | tig0019826:71158-71177 | Msa1376760:intron | 40.0% | |
! | ATGAGCAGGTGTTCTCTTTT+TGG | + | tig0019826:71172-71191 | Msa1376760:intron | 40.0% |
!!! | GTGTTCTCTTTTTGGCTCAA+TGG | + | tig0019826:71180-71199 | Msa1376760:CDS | 40.0% |
!!! | GTTCTCTTTTTGGCTCAATG+GGG | + | tig0019826:71182-71201 | Msa1376760:CDS | 40.0% |
ATATGTCCCAGTCACTCAAA+AGG | + | tig0019826:71278-71297 | Msa1376760:CDS | 40.0% | |
TATGTCCCAGTCACTCAAAA+GGG | + | tig0019826:71279-71298 | Msa1376760:CDS | 40.0% | |
!! | AATAGCCCTTTTGAGTGACT+GGG | - | tig0019826:71287-71306 | None:intergenic | 40.0% |
TCGCCCATTTCAATCTGAAA+AGG | - | tig0019826:71397-71416 | None:intergenic | 40.0% | |
!!! | GAAATGGGCGACTTTTTCAT+TGG | + | tig0019826:71406-71425 | Msa1376760:CDS | 40.0% |
CACATTGTACATATGAGAGG+AGG | - | tig0019826:71577-71596 | None:intergenic | 40.0% | |
!! | AGAGTTGATATGGGATCTCT+TGG | + | tig0019826:71902-71921 | Msa1376760:CDS | 40.0% |
TAACAAGAAACACTGAAGGG+TGG | - | tig0019826:71950-71969 | None:intergenic | 40.0% | |
GGGTAACAAGAAACACTGAA+GGG | - | tig0019826:71953-71972 | None:intergenic | 40.0% | |
AGGGTAACAAGAAACACTGA+AGG | - | tig0019826:71954-71973 | None:intergenic | 40.0% | |
!! | TCACAAGTTGGTTTATGTGG+TGG | + | tig0019826:72069-72088 | Msa1376760:CDS | 40.0% |
TTTGTCACTGGGAAGAGTTT+AGG | + | tig0019826:72274-72293 | Msa1376760:intron | 40.0% | |
TAGCATTGCAATGCTGGAAT+AGG | - | tig0019826:72301-72320 | None:intergenic | 40.0% | |
ATCTTGTAGCATTGCAATGC+TGG | - | tig0019826:72307-72326 | None:intergenic | 40.0% | |
GATTGAGATGGTGACTGAAA+AGG | + | tig0019826:72376-72395 | Msa1376760:CDS | 40.0% | |
ATGGTGACTGAAAAGGAACA+GGG | + | tig0019826:72383-72402 | Msa1376760:CDS | 40.0% | |
ACTCAAACGAAAGTCAACCA+AGG | + | tig0019826:72475-72494 | Msa1376760:CDS | 40.0% | |
!! | GTAAGCCTTTTGAAAGATCC+TGG | + | tig0019826:72524-72543 | Msa1376760:intron | 40.0% |
TCTGACCAGGATCTTTCAAA+AGG | - | tig0019826:72532-72551 | None:intergenic | 40.0% | |
ATTAACTCAGGTTTCTGACC+AGG | - | tig0019826:72545-72564 | None:intergenic | 40.0% | |
CCGATAGTGAACGAAATGTT+TGG | - | tig0019826:72691-72710 | None:intergenic | 40.0% | |
TTTCAAAAGCTAACCTGCTC+TGG | - | tig0019826:72736-72755 | None:intergenic | 40.0% | |
! | CAATTATGCTGCCCATCTTT+TGG | - | tig0019826:72979-72998 | None:intergenic | 40.0% |
ATTGCAACTGTCTGTCTTAG+TGG | + | tig0019826:73150-73169 | Msa1376760:CDS | 40.0% | |
TTGCAACTGTCTGTCTTAGT+GGG | + | tig0019826:73151-73170 | Msa1376760:CDS | 40.0% | |
! | TTTTGACATTCCTCCTCCAA+GGG | + | tig0019826:73182-73201 | Msa1376760:CDS | 40.0% |
GTAAGAGAAACATACCAGAG+AGG | - | tig0019826:73210-73229 | None:intergenic | 40.0% | |
GACTATGGAAATCTCCAACT+TGG | + | tig0019826:73370-73389 | Msa1376760:CDS | 40.0% | |
AAACTACCACAAGTCTCACT+AGG | - | tig0019826:73410-73429 | None:intergenic | 40.0% | |
GGATACATAATGCTTGGACT+GGG | - | tig0019826:73727-73746 | None:intergenic | 40.0% | |
TGGATACATAATGCTTGGAC+TGG | - | tig0019826:73728-73747 | None:intergenic | 40.0% | |
ACTCTTTCCTGCTCGTACAA+TGG | - | tig0019826:68799-68818 | None:intergenic | 45.0% | |
AGGAAAGAGTCCACTGTTTC+TGG | + | tig0019826:68809-68828 | Msa1376760:five_prime_UTR | 45.0% | |
! | TTCTACCCCACCTTCACTTT+TGG | + | tig0019826:68896-68915 | Msa1376760:five_prime_UTR | 45.0% |
GCATACCAAAAGTGAAGGTG+GGG | - | tig0019826:68904-68923 | None:intergenic | 45.0% | |
TAGATTCACGCTATCCACGT+GGG | - | tig0019826:69170-69189 | None:intergenic | 45.0% | |
ATAGATTCACGCTATCCACG+TGG | - | tig0019826:69171-69190 | None:intergenic | 45.0% | |
AGTCAGCAACAATCGAAGGT+AGG | - | tig0019826:69377-69396 | None:intergenic | 45.0% | |
CGATATCCTAACCGATCAGT+AGG | + | tig0019826:69418-69437 | Msa1376760:intron | 45.0% | |
TGAGTGAAGATGTGGTGTTC+TGG | + | tig0019826:69524-69543 | Msa1376760:intron | 45.0% | |
!! | GTGGTGTTCTGGTTTGTTGA+TGG | + | tig0019826:69535-69554 | Msa1376760:intron | 45.0% |
AAACGTCAACGAAGTTGGAC+AGG | + | tig0019826:69750-69769 | Msa1376760:intron | 45.0% | |
TACTTTCTTCTTACCCTGCC+TGG | + | tig0019826:69829-69848 | Msa1376760:intron | 45.0% | |
! | TGTGGGTTGCTTTCTGTTTC+TGG | + | tig0019826:69880-69899 | Msa1376760:CDS | 45.0% |
! | GTGGGTTGCTTTCTGTTTCT+GGG | + | tig0019826:69881-69900 | Msa1376760:CDS | 45.0% |
TAGCATTAGAGCTGCTAGGA+TGG | + | tig0019826:69983-70002 | Msa1376760:CDS | 45.0% | |
AAAGTCAAGCAGACCTGTGT+TGG | + | tig0019826:70019-70038 | Msa1376760:CDS | 45.0% | |
AAGTCAAGCAGACCTGTGTT+GGG | + | tig0019826:70020-70039 | Msa1376760:CDS | 45.0% | |
TGATCATATGCACCCAACAC+AGG | - | tig0019826:70035-70054 | None:intergenic | 45.0% | |
!! | CAAAGGTACTATGGCATCGT+CGG | - | tig0019826:70075-70094 | None:intergenic | 45.0% |
CGATGCCATAGTACCTTTGA+AGG | + | tig0019826:70076-70095 | Msa1376760:CDS | 45.0% | |
ATACCGGAAGTTCGAACCTT+TGG | + | tig0019826:70171-70190 | Msa1376760:CDS | 45.0% | |
TACCGGAAGTTCGAACCTTT+GGG | + | tig0019826:70172-70191 | Msa1376760:CDS | 45.0% | |
AACCCAAAGGTTCGAACTTC+CGG | - | tig0019826:70177-70196 | None:intergenic | 45.0% | |
CTACACCCATCATTGGTACA+AGG | + | tig0019826:70312-70331 | Msa1376760:CDS | 45.0% | |
ACTTGGCGATGTTGTTGTCA+AGG | + | tig0019826:70557-70576 | Msa1376760:CDS | 45.0% | |
CGATGTTGTTGTCAAGGATG+TGG | + | tig0019826:70563-70582 | Msa1376760:CDS | 45.0% | |
! | ATTACTTGGGCTTGGCTTTC+AGG | + | tig0019826:70740-70759 | Msa1376760:CDS | 45.0% |
TGGGGATCCAAAAGCGAAAA+AGG | + | tig0019826:71200-71219 | Msa1376760:CDS | 45.0% | |
GGGGATCCAAAAGCGAAAAA+GGG | + | tig0019826:71201-71220 | Msa1376760:CDS | 45.0% | |
GATCCAAAAGCGAAAAAGGG+TGG | + | tig0019826:71204-71223 | Msa1376760:CDS | 45.0% | |
!! | TCACCACCCTTTTTCGCTTT+TGG | - | tig0019826:71210-71229 | None:intergenic | 45.0% |
AAGGGTGGTGAGCTAATTCT+TGG | + | tig0019826:71219-71238 | Msa1376760:CDS | 45.0% | |
AGGGTGGTGAGCTAATTCTT+GGG | + | tig0019826:71220-71239 | Msa1376760:CDS | 45.0% | |
!! | CAATAGCCCTTTTGAGTGAC+TGG | - | tig0019826:71288-71307 | None:intergenic | 45.0% |
CAGTCACTCAAAAGGGCTAT+TGG | + | tig0019826:71286-71305 | Msa1376760:CDS | 45.0% | |
!!! | ATGGGCGACTTTTTCATTGG+AGG | + | tig0019826:71409-71428 | Msa1376760:CDS | 45.0% |
TTCATTGGAGGTCTCTCAAC+AGG | + | tig0019826:71421-71440 | Msa1376760:CDS | 45.0% | |
!! | TTTTTAGGCGTTTGCGAAGG+TGG | + | tig0019826:71669-71688 | Msa1376760:intron | 45.0% |
! | TGTGCTGCTATTGTGGATTC+AGG | + | tig0019826:71693-71712 | Msa1376760:CDS | 45.0% |
TCAGGAACATCATTGCTTGC+TGG | + | tig0019826:71711-71730 | Msa1376760:CDS | 45.0% | |
AACCATGCTATTGGAGCTGA+AGG | + | tig0019826:71837-71856 | Msa1376760:CDS | 45.0% | |
! | ATATGGGATCTCTTGGTAGC+AGG | + | tig0019826:71909-71928 | Msa1376760:CDS | 45.0% |
! | TATGGGATCTCTTGGTAGCA+GGG | + | tig0019826:71910-71929 | Msa1376760:CDS | 45.0% |
AGAGCAACGACTACAAGTCA+GGG | - | tig0019826:71973-71992 | None:intergenic | 45.0% | |
AAGAGCAACGACTACAAGTC+AGG | - | tig0019826:71974-71993 | None:intergenic | 45.0% | |
!!! | ATTGATTTTCAGGTACGGCC+TGG | + | tig0019826:72036-72055 | Msa1376760:intron | 45.0% |
ACTTGTGAACACACATCACC+AGG | - | tig0019826:72057-72076 | None:intergenic | 45.0% | |
GGTGATGTGTGTTCACAAGT+TGG | + | tig0019826:72057-72076 | Msa1376760:CDS | 45.0% | |
TTGGTTTATGTGGTGGCAAG+AGG | + | tig0019826:72076-72095 | Msa1376760:CDS | 45.0% | |
TGGTTTATGTGGTGGCAAGA+GGG | + | tig0019826:72077-72096 | Msa1376760:CDS | 45.0% | |
! | GCAAGAGGGTACAATCTAAG+AGG | + | tig0019826:72091-72110 | Msa1376760:CDS | 45.0% |
TCTTTGAATCCTCTGCAGCA+TGG | + | tig0019826:72352-72371 | Msa1376760:intron | 45.0% | |
CTTTGAATCCTCTGCAGCAT+GGG | + | tig0019826:72353-72372 | Msa1376760:intron | 45.0% | |
TTTGAATCCTCTGCAGCATG+GGG | + | tig0019826:72354-72373 | Msa1376760:intron | 45.0% | |
GATGGTGACTGAAAAGGAAC+AGG | + | tig0019826:72382-72401 | Msa1376760:CDS | 45.0% | |
CCAAATCACAAGCATCTGAC+AGG | - | tig0019826:72444-72463 | None:intergenic | 45.0% | |
CCTGTCAGATGCTTGTGATT+TGG | + | tig0019826:72441-72460 | Msa1376760:CDS | 45.0% | |
!! | TCTACTACCGACTCTCCATT+TGG | - | tig0019826:72646-72665 | None:intergenic | 45.0% |
!! | ATGCTGCCCATCTTTTGGAA+AGG | - | tig0019826:72974-72993 | None:intergenic | 45.0% |
! | CTTTTGACATTCCTCCTCCA+AGG | + | tig0019826:73181-73200 | Msa1376760:CDS | 45.0% |
TTTGACATTCCTCCTCCAAG+GGG | + | tig0019826:73183-73202 | Msa1376760:CDS | 45.0% | |
CAGCTTCAGCAAAACCAAGT+TGG | - | tig0019826:73387-73406 | None:intergenic | 45.0% | |
AGATTCACGCTATCCACGTG+GGG | - | tig0019826:69169-69188 | None:intergenic | 50.0% | |
TCCTAACCGATCAGTAGGCA+AGG | + | tig0019826:69423-69442 | Msa1376760:intron | 50.0% | |
TCCTTGCCTACTGATCGGTT+AGG | - | tig0019826:69427-69446 | None:intergenic | 50.0% | |
AACCGATCAGTAGGCAAGGA+AGG | + | tig0019826:69427-69446 | Msa1376760:intron | 50.0% | |
CACCTTCCTTGCCTACTGAT+CGG | - | tig0019826:69432-69451 | None:intergenic | 50.0% | |
! | TCAGTAGGCAAGGAAGGTGT+TGG | + | tig0019826:69433-69452 | Msa1376760:intron | 50.0% |
TAGGGAAAATCTGCCAGGCA+GGG | - | tig0019826:69845-69864 | None:intergenic | 50.0% | |
ATAGGGAAAATCTGCCAGGC+AGG | - | tig0019826:69846-69865 | None:intergenic | 50.0% | |
! | TGCCTGGCAGATTTTCCCTA+TGG | + | tig0019826:69845-69864 | Msa1376760:intron | 50.0% |
GGCATCGTCGGATGATTTAC+TGG | - | tig0019826:70063-70082 | None:intergenic | 50.0% | |
TTGCCTGCTACACCCATCAT+TGG | + | tig0019826:70305-70324 | Msa1376760:CDS | 50.0% | |
!! | GTACCAATGATGGGTGTAGC+AGG | - | tig0019826:70311-70330 | None:intergenic | 50.0% |
TTCATTGAGGCTACCCGTGA+AGG | + | tig0019826:70684-70703 | Msa1376760:CDS | 50.0% | |
GGGTGGTGAGCTAATTCTTG+GGG | + | tig0019826:71221-71240 | Msa1376760:CDS | 50.0% | |
GGTGGTGAGCTAATTCTTGG+GGG | + | tig0019826:71222-71241 | Msa1376760:CDS | 50.0% | |
CACTCAAAAGGGCTATTGGC+AGG | + | tig0019826:71290-71309 | Msa1376760:CDS | 50.0% | |
CTCCTTCAGCTCCAATAGCA+TGG | - | tig0019826:71842-71861 | None:intergenic | 50.0% | |
! | ATGGGATCTCTTGGTAGCAG+GGG | + | tig0019826:71911-71930 | Msa1376760:CDS | 50.0% |
GAGAGCTTGCCAAGTCCAAA+TGG | + | tig0019826:72628-72647 | Msa1376760:CDS | 50.0% | |
GCCAAGTCCAAATGGAGAGT+CGG | + | tig0019826:72636-72655 | Msa1376760:CDS | 50.0% | |
! | ACCGACTCTCCATTTGGACT+TGG | - | tig0019826:72640-72659 | None:intergenic | 50.0% |
AAGCTGCCTAGTGAGACTTG+TGG | + | tig0019826:73401-73420 | Msa1376760:exon | 50.0% | |
GGAAGGTCGTCCAGAAACAG+TGG | - | tig0019826:68822-68841 | None:intergenic | 55.0% | |
CGCCATAGGGAAAATCTGCC+AGG | - | tig0019826:69850-69869 | None:intergenic | 55.0% | |
! | AGGTGGCTGTGCTGCTATTG+TGG | + | tig0019826:71686-71705 | Msa1376760:CDS | 55.0% |
TCTCAATCCCCATGCTGCAG+AGG | - | tig0019826:72364-72383 | None:intergenic | 55.0% | |
CTGCAGCATGGGGATTGAGA+TGG | + | tig0019826:72364-72383 | Msa1376760:intron | 55.0% | |
TTTCGTCCTCAGTCCAGAGC+AGG | + | tig0019826:72720-72739 | Msa1376760:CDS | 55.0% | |
! | AGCTAACCTGCTCTGGACTG+AGG | - | tig0019826:72729-72748 | None:intergenic | 55.0% |
ACATACCAGAGAGGACCCCT+TGG | - | tig0019826:73201-73220 | None:intergenic | 55.0% | |
TACCAGAGAGGACCCCTTGG+AGG | - | tig0019826:73198-73217 | None:intergenic | 60.0% | |
CAGAGAGGACCCCTTGGAGG+AGG | - | tig0019826:73195-73214 | None:intergenic | 65.0% | |
CTCCTCCAAGGGGTCCTCTC+TGG | + | tig0019826:73193-73212 | Msa1376760:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0019826 | gene | 68757 | 73764 | 68757 | ID=Msa1376760;Name=Msa1376760 |
tig0019826 | mRNA | 68757 | 73764 | 68757 | ID=Msa1376760-mRNA-1;Parent=Msa1376760;Name=Msa1376760-mRNA-1;_AED=0.11;_eAED=0.11;_QI=170|0.92|0.86|1|0.92|0.86|15|284|488 |
tig0019826 | exon | 68757 | 68917 | 68757 | ID=Msa1376760-mRNA-1:exon:5309;Parent=Msa1376760-mRNA-1 |
tig0019826 | exon | 69855 | 70220 | 69855 | ID=Msa1376760-mRNA-1:exon:5310;Parent=Msa1376760-mRNA-1 |
tig0019826 | exon | 70304 | 70364 | 70304 | ID=Msa1376760-mRNA-1:exon:5311;Parent=Msa1376760-mRNA-1 |
tig0019826 | exon | 70490 | 70584 | 70490 | ID=Msa1376760-mRNA-1:exon:5312;Parent=Msa1376760-mRNA-1 |
tig0019826 | exon | 70681 | 70770 | 70681 | ID=Msa1376760-mRNA-1:exon:5313;Parent=Msa1376760-mRNA-1 |
tig0019826 | exon | 71180 | 71311 | 71180 | ID=Msa1376760-mRNA-1:exon:5314;Parent=Msa1376760-mRNA-1 |
tig0019826 | exon | 71403 | 71442 | 71403 | ID=Msa1376760-mRNA-1:exon:5315;Parent=Msa1376760-mRNA-1 |
tig0019826 | exon | 71676 | 71740 | 71676 | ID=Msa1376760-mRNA-1:exon:5316;Parent=Msa1376760-mRNA-1 |
tig0019826 | exon | 71819 | 71932 | 71819 | ID=Msa1376760-mRNA-1:exon:5317;Parent=Msa1376760-mRNA-1 |
tig0019826 | exon | 72048 | 72112 | 72048 | ID=Msa1376760-mRNA-1:exon:5318;Parent=Msa1376760-mRNA-1 |
tig0019826 | exon | 72370 | 72523 | 72370 | ID=Msa1376760-mRNA-1:exon:5319;Parent=Msa1376760-mRNA-1 |
tig0019826 | exon | 72622 | 72741 | 72622 | ID=Msa1376760-mRNA-1:exon:5320;Parent=Msa1376760-mRNA-1 |
tig0019826 | exon | 73126 | 73214 | 73126 | ID=Msa1376760-mRNA-1:exon:5321;Parent=Msa1376760-mRNA-1 |
tig0019826 | exon | 73327 | 73664 | 73327 | ID=Msa1376760-mRNA-1:exon:5322;Parent=Msa1376760-mRNA-1 |
tig0019826 | exon | 73734 | 73764 | 73734 | ID=Msa1376760-mRNA-1:exon:5323;Parent=Msa1376760-mRNA-1 |
tig0019826 | five_prime_UTR | 68757 | 68917 | 68757 | ID=Msa1376760-mRNA-1:five_prime_utr;Parent=Msa1376760-mRNA-1 |
tig0019826 | five_prime_UTR | 69855 | 69863 | 69855 | ID=Msa1376760-mRNA-1:five_prime_utr;Parent=Msa1376760-mRNA-1 |
tig0019826 | CDS | 69864 | 70220 | 69864 | ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1 |
tig0019826 | CDS | 70304 | 70364 | 70304 | ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1 |
tig0019826 | CDS | 70490 | 70584 | 70490 | ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1 |
tig0019826 | CDS | 70681 | 70770 | 70681 | ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1 |
tig0019826 | CDS | 71180 | 71311 | 71180 | ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1 |
tig0019826 | CDS | 71403 | 71442 | 71403 | ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1 |
tig0019826 | CDS | 71676 | 71740 | 71676 | ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1 |
tig0019826 | CDS | 71819 | 71932 | 71819 | ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1 |
tig0019826 | CDS | 72048 | 72112 | 72048 | ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1 |
tig0019826 | CDS | 72370 | 72523 | 72370 | ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1 |
tig0019826 | CDS | 72622 | 72741 | 72622 | ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1 |
tig0019826 | CDS | 73126 | 73214 | 73126 | ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1 |
tig0019826 | CDS | 73327 | 73411 | 73327 | ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1 |
tig0019826 | three_prime_UTR | 73412 | 73664 | 73412 | ID=Msa1376760-mRNA-1:three_prime_utr;Parent=Msa1376760-mRNA-1 |
tig0019826 | three_prime_UTR | 73734 | 73764 | 73734 | ID=Msa1376760-mRNA-1:three_prime_utr;Parent=Msa1376760-mRNA-1 |
Gene Sequence |
Protein sequence |