AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1376760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376760 MtrunA17_Chr1g0193211 94.685 508 7 1 1 488 1 508 0.0 978
Msa1376760 MtrunA17_Chr7g0271351 75.246 509 100 3 1 488 1 504 0.0 800
Msa1376760 MtrunA17_Chr4g0069631 50.980 510 215 5 1 488 1 497 0.0 549
Msa1376760 MtrunA17_Chr4g0075181 53.831 522 204 7 1 488 1 519 0.0 542
Msa1376760 MtrunA17_Chr2g0288851 55.319 517 195 6 1 488 1 510 0.0 539
Msa1376760 MtrunA17_Chr2g0302421 50.197 508 222 6 6 488 1 502 0.0 526
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376760 AT1G11910.1 58.884 484 172 4 26 488 29 506 0.0 578
Msa1376760 AT1G11910.2 58.884 484 172 4 26 488 40 517 0.0 578
Msa1376760 AT1G62290.1 56.612 484 188 3 26 487 29 512 0.0 566
Msa1376760 AT1G62290.2 56.612 484 188 3 26 487 29 512 0.0 566
Msa1376760 AT4G04460.1 52.479 484 203 4 26 488 31 508 0.0 528
Msa1376760 AT1G62290.5 55.240 458 183 3 26 461 29 486 0.0 524
Msa1376760 AT4G04460.2 52.273 484 200 5 26 488 31 504 0.0 521
Msa1376760 AT1G62290.6 54.206 428 174 3 26 431 29 456 2.73e-165 475
Msa1376760 AT1G62290.4 54.206 428 174 3 26 431 29 456 2.73e-165 475
Msa1376760 AT1G62290.3 53.728 389 158 3 26 392 29 417 4.98e-145 422
Msa1376760 AT4G22050.1 37.247 247 131 5 69 293 30 274 3.72e-41 151
Msa1376760 AT4G22050.1 33.571 140 68 7 354 488 234 353 1.14e-11 66.6
Msa1376760 AT1G69100.1 36.220 254 131 10 77 302 39 289 3.28e-37 140
Msa1376760 AT1G69100.2 36.220 254 131 10 77 302 47 297 3.52e-37 140

Find 134 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGGGTTGCTTTCTGTTTC+TGG 0.027211 tig0019826:+69880 Msa1376760:CDS
ATTACTTGGGCTTGGCTTTC+AGG 0.101496 tig0019826:+70740 Msa1376760:CDS
TATTTGAATGCACAATATTA+TGG 0.213005 tig0019826:+70101 Msa1376760:CDS
TGGGGATCCAAAAGCGAAAA+AGG 0.245272 tig0019826:+71200 Msa1376760:CDS
TTCTACCCCACCTTCACTTT+TGG 0.252482 tig0019826:+68896 Msa1376760:five_prime_UTR
AAGGAAATTGTTACTGAATA+TGG 0.254211 tig0019826:+71879 Msa1376760:CDS
ACTTTCGTTTGAGTTGATTC+TGG 0.257963 tig0019826:-72466 None:intergenic
CCTGTCAGATGCTTGTGATT+TGG 0.258700 tig0019826:+72441 Msa1376760:CDS
CTGAATATGGAGAGTTGATA+TGG 0.273202 tig0019826:+71892 Msa1376760:CDS
GCACGTATGTAACTACTTAA+TGG 0.280619 tig0019826:+73480 Msa1376760:three_prime_UTR
AGGAAAGAGTCCACTGTTTC+TGG 0.287444 tig0019826:+68809 Msa1376760:five_prime_UTR
ACCATTCTTAGTATATGTTT+TGG 0.290296 tig0019826:-70344 None:intergenic
GTGGGTTGCTTTCTGTTTCT+GGG 0.300164 tig0019826:+69881 Msa1376760:CDS
TATCACACTGTCTTTGACTA+TGG 0.305502 tig0019826:+73355 Msa1376760:CDS
AACCCAAAGGTTCGAACTTC+CGG 0.323172 tig0019826:-70174 None:intergenic
CTTCTTCCTTCTTTCTCCTA+TGG 0.341567 tig0019826:+69918 Msa1376760:CDS
ATAATCCTTCAAAGGTACTA+TGG 0.366326 tig0019826:-70081 None:intergenic
ATACCGGAAGTTCGAACCTT+TGG 0.366601 tig0019826:+70171 Msa1376760:CDS
TTCATTGGAGGTCTCTCAAC+AGG 0.375201 tig0019826:+71421 Msa1376760:CDS
TATGGATCTGGAGCAATATC+TGG 0.380262 tig0019826:+70510 Msa1376760:CDS
GGCATCGTCGGATGATTTAC+TGG 0.385524 tig0019826:-70060 None:intergenic
TGTGCTGCTATTGTGGATTC+AGG 0.385643 tig0019826:+71693 Msa1376760:CDS
ACTGAAATCAACCATGCTAT+TGG 0.387536 tig0019826:+71828 Msa1376760:CDS
TTTGTGCTGGCAAAGTTTGA+TGG 0.391550 tig0019826:+70717 Msa1376760:CDS
GCACAATATTATGGAGAGAT+TGG 0.391737 tig0019826:+70110 Msa1376760:CDS
GCAAAGTTTGATGGATTACT+TGG 0.395124 tig0019826:+70726 Msa1376760:CDS
TACCGGAAGTTCGAACCTTT+GGG 0.402892 tig0019826:+70172 Msa1376760:CDS
ATTGCAACTGTCTGTCTTAG+TGG 0.405812 tig0019826:+73150 Msa1376760:CDS
TTTGATGGATTACTTGGGCT+TGG 0.408707 tig0019826:+70732 Msa1376760:CDS
CTCCTCCAAGGGGTCCTCTC+TGG 0.412726 tig0019826:+73193 Msa1376760:CDS
CGATGCCATAGTACCTTTGA+AGG 0.413136 tig0019826:+70076 Msa1376760:CDS
TATTATGGAGAGATTGGAAT+TGG 0.414971 tig0019826:+70116 Msa1376760:CDS
AGTTCTGAGTGTAGAATGTA+AGG 0.415661 tig0019826:+71860 Msa1376760:CDS
ATATGGGATCTCTTGGTAGC+AGG 0.416249 tig0019826:+71909 Msa1376760:CDS
TTTCAAAAGCTAACCTGCTC+TGG 0.419852 tig0019826:-72733 None:intergenic
TCAGGAACATCATTGCTTGC+TGG 0.420845 tig0019826:+71711 Msa1376760:CDS
TCTACTACCGACTCTCCATT+TGG 0.426333 tig0019826:-72643 None:intergenic
AAGGGTGGTGAGCTAATTCT+TGG 0.431483 tig0019826:+71219 Msa1376760:CDS
CCGATAGTGAACGAAATGTT+TGG 0.437728 tig0019826:-72688 None:intergenic
GATGGTGACTGAAAAGGAAC+AGG 0.445152 tig0019826:+72382 Msa1376760:CDS
ACATCATGTAAAATAGCATA+TGG 0.445708 tig0019826:+70492 Msa1376760:CDS
AAATAAAGAAACGAGTGTAT+TGG 0.447128 tig0019826:+68751 None:intergenic
TGTTCACAAGTTGGTTTATG+TGG 0.447600 tig0019826:+72066 Msa1376760:CDS
TCTTTGCCTTGTACCAATGA+TGG 0.454127 tig0019826:-70318 None:intergenic
TTGCAACTGTCTGTCTTAGT+GGG 0.456599 tig0019826:+73151 Msa1376760:CDS
AGGAAGAAGTGAGCATGTTA+AGG 0.461966 tig0019826:-69904 None:intergenic
AGTCAAGATAATGTTAAACT+TGG 0.466184 tig0019826:+70540 Msa1376760:CDS
AGGTAGTATTTCCTTTGTGC+TGG 0.466744 tig0019826:+70704 Msa1376760:CDS
ATATGTCCCAGTCACTCAAA+AGG 0.467120 tig0019826:+71278 Msa1376760:CDS
TCCAAAACATATACTAAGAA+TGG 0.470813 tig0019826:+70343 Msa1376760:CDS
GTAGTTTATTACTAGTATGT+AGG 0.472258 tig0019826:+73423 Msa1376760:three_prime_UTR
CCAAACATTTCGTTCACTAT+CGG 0.480158 tig0019826:+72688 Msa1376760:CDS
ACTCTTTCCTGCTCGTACAA+TGG 0.482508 tig0019826:-68796 None:intergenic
TGTAAAATAGCATATGGATC+TGG 0.485019 tig0019826:+70498 Msa1376760:CDS
AGGTGGCTGTGCTGCTATTG+TGG 0.487001 tig0019826:+71686 Msa1376760:CDS
AAAGTCAAGCAGACCTGTGT+TGG 0.487437 tig0019826:+70019 Msa1376760:CDS
CAGTCACTCAAAAGGGCTAT+TGG 0.490769 tig0019826:+71286 Msa1376760:CDS
GTACCAATGATGGGTGTAGC+AGG 0.494741 tig0019826:-70308 None:intergenic
TTGCCTGCTACACCCATCAT+TGG 0.494879 tig0019826:+70305 Msa1376760:CDS
AGAGTTGATATGGGATCTCT+TGG 0.497460 tig0019826:+71902 Msa1376760:CDS
GACTATGGAAATCTCCAACT+TGG 0.497542 tig0019826:+73370 Msa1376760:CDS
TTTAATGTCATATTTGATAC+CGG 0.504218 tig0019826:+70155 Msa1376760:CDS
CTTTGCCTTGTACCAATGAT+GGG 0.506920 tig0019826:-70317 None:intergenic
CAAAGGAAATACTACCTTCA+CGG 0.507736 tig0019826:-70698 None:intergenic
CTATGGCGAACAAGTATTTG+TGG 0.507847 tig0019826:+69862 Msa1376760:exon
TATGGCGAACAAGTATTTGT+GGG 0.510711 tig0019826:+69863 Msa1376760:exon
TTTCGTCCTCAGTCCAGAGC+AGG 0.513352 tig0019826:+72720 Msa1376760:CDS
ATATGACATTAAATGTCTGC+GGG 0.514798 tig0019826:-70145 None:intergenic
CACTCAAAAGGGCTATTGGC+AGG 0.514804 tig0019826:+71290 Msa1376760:CDS
AGGGTGGTGAGCTAATTCTT+GGG 0.521468 tig0019826:+71220 Msa1376760:CDS
CCAAATCACAAGCATCTGAC+AGG 0.525516 tig0019826:-72441 None:intergenic
AACCATGCTATTGGAGCTGA+AGG 0.532160 tig0019826:+71837 Msa1376760:CDS
ACCGACTCTCCATTTGGACT+TGG 0.532497 tig0019826:-72637 None:intergenic
GTTGATCCAAATCACTTCAA+AGG 0.533108 tig0019826:+71246 Msa1376760:CDS
AAAGGAAATACTACCTTCAC+GGG 0.535086 tig0019826:-70697 None:intergenic
GGTGATGTGTGTTCACAAGT+TGG 0.536807 tig0019826:+72057 Msa1376760:CDS
ACAAAATCCATTGTACGAGC+AGG 0.537967 tig0019826:+68789 Msa1376760:five_prime_UTR
AAGTCAAGCAGACCTGTGTT+GGG 0.541826 tig0019826:+70020 Msa1376760:CDS
CACAAATACTTGTTCGCCAT+AGG 0.542130 tig0019826:-69861 None:intergenic
ATAAATCCATAGGAGAAAGA+AGG 0.545243 tig0019826:-69924 None:intergenic
TTCATTGAGGCTACCCGTGA+AGG 0.546701 tig0019826:+70684 Msa1376760:CDS
CAAAGTTTGATGGATTACTT+GGG 0.547133 tig0019826:+70727 Msa1376760:CDS
AACACATAAACAACAAAAGT+AGG 0.547843 tig0019826:-68840 None:intergenic
TGAATATGGAGAGTTGATAT+GGG 0.547882 tig0019826:+71893 Msa1376760:CDS
AGCATACCAAAAGTGAAGGT+GGG 0.548644 tig0019826:-68902 None:intergenic
ACAAATACTTGTTCGCCATA+GGG 0.554513 tig0019826:-69860 None:intergenic
CAGAGAGGACCCCTTGGAGG+AGG 0.556555 tig0019826:-73192 None:intergenic
TATGTCCCAGTCACTCAAAA+GGG 0.557674 tig0019826:+71279 Msa1376760:CDS
CGATGTTGTTGTCAAGGATG+TGG 0.559094 tig0019826:+70563 Msa1376760:CDS
TTGGTTTATGTGGTGGCAAG+AGG 0.559110 tig0019826:+72076 Msa1376760:CDS
CTACACCCATCATTGGTACA+AGG 0.560382 tig0019826:+70312 Msa1376760:CDS
CAGCTTCAGCAAAACCAAGT+TGG 0.561265 tig0019826:-73384 None:intergenic
GATTGAGATGGTGACTGAAA+AGG 0.563634 tig0019826:+72376 Msa1376760:CDS
GAGAGCTTGCCAAGTCCAAA+TGG 0.564520 tig0019826:+72628 Msa1376760:CDS
GCAAGAGGGTACAATCTAAG+AGG 0.567144 tig0019826:+72091 Msa1376760:CDS
ACATACCAGAGAGGACCCCT+TGG 0.568366 tig0019826:-73198 None:intergenic
GCATTCAAATAATCCTTCAA+AGG 0.571708 tig0019826:-70089 None:intergenic
ACTTGTGAACACACATCACC+AGG 0.573452 tig0019826:-72054 None:intergenic
GGGTGGTGAGCTAATTCTTG+GGG 0.575026 tig0019826:+71221 Msa1376760:CDS
TATGGGATCTCTTGGTAGCA+GGG 0.575997 tig0019826:+71910 Msa1376760:CDS
TACCAGAGAGGACCCCTTGG+AGG 0.578063 tig0019826:-73195 None:intergenic
CTCCTTCAGCTCCAATAGCA+TGG 0.581282 tig0019826:-71839 None:intergenic
TAGCATTAGAGCTGCTAGGA+TGG 0.582888 tig0019826:+69983 Msa1376760:CDS
CAAAGGTACTATGGCATCGT+CGG 0.583586 tig0019826:-70072 None:intergenic
AATATGACATTAAATGTCTG+CGG 0.583626 tig0019826:-70146 None:intergenic
ATGTAACTACTTAATGGTGC+AGG 0.586719 tig0019826:+73486 Msa1376760:three_prime_UTR
ATACTTTAATACAACATACA+TGG 0.587797 tig0019826:-73602 None:intergenic
GAAACTGTAGGATTTCATTG+AGG 0.588396 tig0019826:+70671 Msa1376760:intron
AAGCATACCAAAAGTGAAGG+TGG 0.598100 tig0019826:-68903 None:intergenic
TGGTTTATGTGGTGGCAAGA+GGG 0.598763 tig0019826:+72077 Msa1376760:CDS
ACTTGGCGATGTTGTTGTCA+AGG 0.601776 tig0019826:+70557 Msa1376760:CDS
AAACTACCACAAGTCTCACT+AGG 0.604215 tig0019826:-73407 None:intergenic
GGAAAGCATACCAAAAGTGA+AGG 0.608581 tig0019826:-68906 None:intergenic
GCCAAGTCCAAATGGAGAGT+CGG 0.611187 tig0019826:+72636 Msa1376760:CDS
GCATACCAAAAGTGAAGGTG+GGG 0.611673 tig0019826:-68901 None:intergenic
ATGGGATCTCTTGGTAGCAG+GGG 0.615385 tig0019826:+71911 Msa1376760:CDS
CATAAACAACAAAAGTAGGA+AGG 0.615535 tig0019826:-68836 None:intergenic
TTTGACATTCCTCCTCCAAG+GGG 0.621730 tig0019826:+73183 Msa1376760:CDS
TTGATAGCATTAGAGCTGCT+AGG 0.621778 tig0019826:+69979 Msa1376760:CDS
TCACAAGTTGGTTTATGTGG+TGG 0.628952 tig0019826:+72069 Msa1376760:CDS
AACTACATGATACTTTAACA+TGG 0.631393 tig0019826:-73745 None:intergenic
CTGCAGCATGGGGATTGAGA+TGG 0.633556 tig0019826:+72364 Msa1376760:intron
ATCAAACTTTGCCAGCACAA+AGG 0.640448 tig0019826:-70715 None:intergenic
AGCTAACCTGCTCTGGACTG+AGG 0.651008 tig0019826:-72726 None:intergenic
TGATCATATGCACCCAACAC+AGG 0.654844 tig0019826:-70032 None:intergenic
GGAAGGTCGTCCAGAAACAG+TGG 0.656322 tig0019826:-68819 None:intergenic
ATGACATTAAATGTCTGCGG+GGG 0.693826 tig0019826:-70143 None:intergenic
ATGGTGACTGAAAAGGAACA+GGG 0.704689 tig0019826:+72383 Msa1376760:CDS
TATGACATTAAATGTCTGCG+GGG 0.719171 tig0019826:-70144 None:intergenic
ACTCAAACGAAAGTCAACCA+AGG 0.720996 tig0019826:+72475 Msa1376760:CDS
GGTGGTGAGCTAATTCTTGG+GGG 0.731770 tig0019826:+71222 Msa1376760:CDS
AAGCTGCCTAGTGAGACTTG+TGG 0.732793 tig0019826:+73401 Msa1376760:exon
ACTTTGATGATGGAACCCAA+AGG 0.766571 tig0019826:-70187 None:intergenic
GTAAGAGAAACATACCAGAG+AGG 0.774024 tig0019826:-73207 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTCTTTATATTTATTTA+TGG + tig0019826:69200-69219 Msa1376760:intron 10.0%
!! AGATTAAAATTGGAAAATAA+AGG - tig0019826:68930-68949 None:intergenic 15.0%
!! AAAAGATTGAAGATTAAAAT+TGG - tig0019826:68940-68959 None:intergenic 15.0%
!! AATGTAAAAAATAGACATTA+AGG + tig0019826:69634-69653 Msa1376760:intron 15.0%
!!! TTACTACTTTTATGTAAATT+TGG + tig0019826:69779-69798 Msa1376760:intron 15.0%
!!! TACTACTTTTATGTAAATTT+GGG + tig0019826:69780-69799 Msa1376760:intron 15.0%
!! ATTAATGTATAATTCAAACA+TGG - tig0019826:70888-70907 None:intergenic 15.0%
!!! TGTGTATATTTGTATATTTT+TGG + tig0019826:71593-71612 Msa1376760:intron 15.0%
!!! AACATGTTGATATTATTTTT+AGG + tig0019826:71654-71673 Msa1376760:intron 15.0%
!! AAATTGGTTGAAATTTAAAA+GGG + tig0019826:73699-73718 Msa1376760:intron 15.0%
!! TATCATATAATTTATGCTTC+AGG + tig0019826:68991-69010 Msa1376760:intron 20.0%
!! ATACTTATAAGATGTGATTT+AGG + tig0019826:69329-69348 Msa1376760:intron 20.0%
!! TTGAAACGAATAATAAAACA+AGG - tig0019826:69690-69709 None:intergenic 20.0%
!! TTTACATAAAAGTAGTAATG+AGG - tig0019826:69777-69796 None:intergenic 20.0%
!!! ATCAATTTTCATAAATCCAT+AGG - tig0019826:69937-69956 None:intergenic 20.0%
!! TATTTGAATGCACAATATTA+TGG + tig0019826:70101-70120 Msa1376760:CDS 20.0%
!! TTTAATGTCATATTTGATAC+CGG + tig0019826:70155-70174 Msa1376760:CDS 20.0%
!!! AAACAAAATTTAGTTTGATC+AGG + tig0019826:71319-71338 Msa1376760:intron 20.0%
!! ATAGTGAATACTGAAAAATA+AGG + tig0019826:71481-71500 Msa1376760:intron 20.0%
!! TAGTGAATACTGAAAAATAA+GGG + tig0019826:71482-71501 Msa1376760:intron 20.0%
!! AGCTATGATTGAATAATATA+TGG - tig0019826:71762-71781 None:intergenic 20.0%
!! AATCAATATTAAGCTCATTT+AGG - tig0019826:72023-72042 None:intergenic 20.0%
!!! TTAATATTGATTTTCAGGTA+CGG + tig0019826:72031-72050 Msa1376760:intron 20.0%
!! ATCGAAATACAATGAATTAA+AGG - tig0019826:72181-72200 None:intergenic 20.0%
!! TTAATTCATTGTATTTCGAT+TGG + tig0019826:72181-72200 Msa1376760:intron 20.0%
!!! TGTGAATATTTCAGATTTTT+AGG + tig0019826:72861-72880 Msa1376760:intron 20.0%
!! TTGATCTATAGTATATTTGT+TGG + tig0019826:73076-73095 Msa1376760:intron 20.0%
!!! TTTCAGTATATTTTGAAAAC+TGG + tig0019826:73120-73139 Msa1376760:intron 20.0%
!! ATACTTTAATACAACATACA+TGG - tig0019826:73605-73624 None:intergenic 20.0%
!! GAAATTGGTTGAAATTTAAA+AGG + tig0019826:73698-73717 Msa1376760:intron 20.0%
!! AATTGGTTGAAATTTAAAAG+GGG + tig0019826:73700-73719 Msa1376760:intron 20.0%
!!! TACAATGGATTTTGTATACT+TGG - tig0019826:68784-68803 None:intergenic 25.0%
! AACACATAAACAACAAAAGT+AGG - tig0019826:68843-68862 None:intergenic 25.0%
! ACTGAAAAGAAAAAGAATCA+TGG - tig0019826:69122-69141 None:intergenic 25.0%
!!! CTCAAAAGCATTTAGTATAT+GGG - tig0019826:69508-69527 None:intergenic 25.0%
!!! ACTCAAAAGCATTTAGTATA+TGG - tig0019826:69509-69528 None:intergenic 25.0%
! CGAATAATAAAACAAGGAAA+TGG - tig0019826:69684-69703 None:intergenic 25.0%
! TTTATGTAAATTTGGGAGTT+TGG + tig0019826:69787-69806 Msa1376760:intron 25.0%
! AATATGACATTAAATGTCTG+CGG - tig0019826:70149-70168 None:intergenic 25.0%
! TCCAAAACATATACTAAGAA+TGG + tig0019826:70343-70362 Msa1376760:CDS 25.0%
!! ACCATTCTTAGTATATGTTT+TGG - tig0019826:70347-70366 None:intergenic 25.0%
! TTACTCATATTCATTTGTAG+TGG + tig0019826:70382-70401 Msa1376760:intron 25.0%
! ACATCATGTAAAATAGCATA+TGG + tig0019826:70492-70511 Msa1376760:CDS 25.0%
! AGTCAAGATAATGTTAAACT+TGG + tig0019826:70540-70559 Msa1376760:CDS 25.0%
!! AGTTTTTATACAGCAAATCT+TGG + tig0019826:70631-70650 Msa1376760:intron 25.0%
! TTGCATGTCAGAATTAAATA+TGG + tig0019826:70835-70854 Msa1376760:intron 25.0%
! TCTGTTATGTCCATTAATTT+AGG + tig0019826:70862-70881 Msa1376760:intron 25.0%
!! CTTCATTTTATCTCTTGTTA+TGG - tig0019826:70954-70973 None:intergenic 25.0%
! TTCAAATGTGTAGTTTAATG+CGG + tig0019826:71349-71368 Msa1376760:intron 25.0%
!! TATACCTTTTCAGATTGAAA+TGG + tig0019826:71390-71409 Msa1376760:intron 25.0%
!! ATACCTTTTCAGATTGAAAT+GGG + tig0019826:71391-71410 Msa1376760:intron 25.0%
! ACTATCTTATTGTTGAAGAA+CGG - tig0019826:71455-71474 None:intergenic 25.0%
! AAAATAAGGGAGTAATTTAG+TGG + tig0019826:71495-71514 Msa1376760:intron 25.0%
!!! AAAGGTTTTAAGATATGGTA+TGG + tig0019826:71521-71540 Msa1376760:intron 25.0%
!!! CATTTATACTTTTTGTTGAC+CGG + tig0019826:71785-71804 Msa1376760:intron 25.0%
! AAGGAAATTGTTACTGAATA+TGG + tig0019826:71879-71898 Msa1376760:CDS 25.0%
!!! TGAGCTTAATATTGATTTTC+AGG + tig0019826:72026-72045 Msa1376760:intron 25.0%
!!! TTAGTTTCTTTTTTTGTCAC+TGG + tig0019826:72262-72281 Msa1376760:intron 25.0%
!!! TAGTTTCTTTTTTTGTCACT+GGG + tig0019826:72263-72282 Msa1376760:intron 25.0%
!! GTAGTTGAATATTTTATCCT+TGG - tig0019826:72495-72514 None:intergenic 25.0%
! ATAATTCGAAACATTAACTC+AGG - tig0019826:72557-72576 None:intergenic 25.0%
! AAAATACCTTTCCAAAAGAT+GGG + tig0019826:72965-72984 Msa1376760:intron 25.0%
!!! TATATTTTGAAAACTGGAGA+AGG + tig0019826:73126-73145 Msa1376760:CDS 25.0%
!!! AGCAAGATTTATTTTAAGCA+AGG - tig0019826:73278-73297 None:intergenic 25.0%
! GTAGTTTATTACTAGTATGT+AGG + tig0019826:73423-73442 Msa1376760:three_prime_UTR 25.0%
! ATATCATGTATCCATGTTTA+AGG + tig0019826:73648-73667 Msa1376760:intron 25.0%
CATAAACAACAAAAGTAGGA+AGG - tig0019826:68839-68858 None:intergenic 30.0%
AGAAGCAACATGAAAATATG+TGG - tig0019826:69090-69109 None:intergenic 30.0%
!! GTTAGTGATTAGTCTTACAT+CGG + tig0019826:69465-69484 Msa1376760:intron 30.0%
ATAAATCCATAGGAGAAAGA+AGG - tig0019826:69927-69946 None:intergenic 30.0%
!! ATAATCCTTCAAAGGTACTA+TGG - tig0019826:70084-70103 None:intergenic 30.0%
GCATTCAAATAATCCTTCAA+AGG - tig0019826:70092-70111 None:intergenic 30.0%
TATTATGGAGAGATTGGAAT+TGG + tig0019826:70116-70135 Msa1376760:CDS 30.0%
ATATGACATTAAATGTCTGC+GGG - tig0019826:70148-70167 None:intergenic 30.0%
GAAAAATAGCACTTTGATGA+TGG - tig0019826:70200-70219 None:intergenic 30.0%
GAATATGAGTAATGAGAAGA+TGG - tig0019826:70374-70393 None:intergenic 30.0%
GGACATTAGAACGTATTAAA+TGG - tig0019826:70450-70469 None:intergenic 30.0%
CCTGAATTGACAAGTAAAAA+AGG - tig0019826:70471-70490 None:intergenic 30.0%
!!! CCTTTTTTACTTGTCAATTC+AGG + tig0019826:70468-70487 Msa1376760:intron 30.0%
TGTAAAATAGCATATGGATC+TGG + tig0019826:70498-70517 Msa1376760:CDS 30.0%
! TTTTATACAGCAAATCTTGG+AGG + tig0019826:70634-70653 Msa1376760:intron 30.0%
TATATTGTCCTTGAAACTGT+AGG + tig0019826:70659-70678 Msa1376760:intron 30.0%
AATGAAATCCTACAGTTTCA+AGG - tig0019826:70670-70689 None:intergenic 30.0%
!! CAAAGTTTGATGGATTACTT+GGG + tig0019826:70727-70746 Msa1376760:CDS 30.0%
TCAGATGCAAATGAAATAAC+AGG - tig0019826:70815-70834 None:intergenic 30.0%
TCAAACATGGCCTAAATTAA+TGG - tig0019826:70875-70894 None:intergenic 30.0%
CCTATACATAAGCACTTATT+TGG - tig0019826:70925-70944 None:intergenic 30.0%
CCAAATAAGTGCTTATGTAT+AGG + tig0019826:70922-70941 Msa1376760:intron 30.0%
TGTATATCCTAGAGAACTTA+TGG + tig0019826:70986-71005 Msa1376760:intron 30.0%
CTTATTTCCATAAGTTCTCT+AGG - tig0019826:70996-71015 None:intergenic 30.0%
!! GATGTATAATGGATCACTAA+AGG - tig0019826:71119-71138 None:intergenic 30.0%
TTTGTACCTGTGATGTATAA+TGG - tig0019826:71130-71149 None:intergenic 30.0%
TATACATCACAGGTACAAAA+TGG + tig0019826:71131-71150 Msa1376760:intron 30.0%
!!! TGTTTTCCTTTGAAGTGATT+TGG - tig0019826:71255-71274 None:intergenic 30.0%
!!! GGTTGAAAGGTTTTAAGATA+TGG + tig0019826:71516-71535 Msa1376760:intron 30.0%
ATACACATTGTACATATGAG+AGG - tig0019826:71580-71599 None:intergenic 30.0%
TTACAAAGTGCATCTAATTG+TGG + tig0019826:71631-71650 Msa1376760:intron 30.0%
AAGATGTAAGTACATACAGT+TGG - tig0019826:71738-71757 None:intergenic 30.0%
!! TGAATATGGAGAGTTGATAT+GGG + tig0019826:71893-71912 Msa1376760:CDS 30.0%
! TTAAGCTCATTTAGGTTCAA+AGG - tig0019826:72015-72034 None:intergenic 30.0%
TGGTAATAATTTGAAGATGC+TGG + tig0019826:72201-72220 Msa1376760:intron 30.0%
CAGTGATTTATACTCTTCAT+TGG + tig0019826:72230-72249 Msa1376760:intron 30.0%
! ATTGCAATGCTACAAGATTT+TGG + tig0019826:72309-72328 Msa1376760:intron 30.0%
GAATTATCCTATTGCTTTGA+TGG + tig0019826:72570-72589 Msa1376760:intron 30.0%
AATCAATCCATCAAAGCAAT+AGG - tig0019826:72580-72599 None:intergenic 30.0%
!!! TTGCTTTGATGGATTGATTT+TGG + tig0019826:72581-72600 Msa1376760:intron 30.0%
!!! CATCTTTTGGAAAGGTATTT+TGG - tig0019826:72966-72985 None:intergenic 30.0%
CAAAATACCTTTCCAAAAGA+TGG + tig0019826:72964-72983 Msa1376760:intron 30.0%
TTACTCATATCTACATCCAA+AGG + tig0019826:73033-73052 Msa1376760:intron 30.0%
! TTGTCCTTTTTCTTTTCTGA+AGG + tig0019826:73305-73324 Msa1376760:intron 30.0%
GAATCCTTCAGAAAAGAAAA+AGG - tig0019826:73312-73331 None:intergenic 30.0%
!! TTTCTTTTCTGAAGGATTCT+TGG + tig0019826:73313-73332 Msa1376760:intron 30.0%
ATGTACATGATCCTTAAACA+TGG - tig0019826:73662-73681 None:intergenic 30.0%
TAACATGGATACATAATGCT+TGG - tig0019826:73733-73752 None:intergenic 30.0%
!!! TTTTTTGAATATTCCCCACG+TGG + tig0019826:69153-69172 Msa1376760:intron 35.0%
TTAAAGTCAGCAACAATCGA+AGG - tig0019826:69381-69400 None:intergenic 35.0%
!! AATGCTTTTGAGTGAAGATG+TGG + tig0019826:69516-69535 Msa1376760:intron 35.0%
TTTACAAACGTCAACGAAGT+TGG + tig0019826:69745-69764 Msa1376760:intron 35.0%
AAGAAGAAAGTAAGTGAAGG+TGG - tig0019826:69821-69840 None:intergenic 35.0%
GGTAAGAAGAAAGTAAGTGA+AGG - tig0019826:69824-69843 None:intergenic 35.0%
ACAAATACTTGTTCGCCATA+GGG - tig0019826:69863-69882 None:intergenic 35.0%
TATGGCGAACAAGTATTTGT+GGG + tig0019826:69863-69882 Msa1376760:exon 35.0%
GCACAATATTATGGAGAGAT+TGG + tig0019826:70110-70129 Msa1376760:CDS 35.0%
TATGACATTAAATGTCTGCG+GGG - tig0019826:70147-70166 None:intergenic 35.0%
TACACTTTGCGTGATTTCAT+CGG - tig0019826:70408-70427 None:intergenic 35.0%
GAAACTGTAGGATTTCATTG+AGG + tig0019826:70671-70690 Msa1376760:intron 35.0%
AAAGGAAATACTACCTTCAC+GGG - tig0019826:70700-70719 None:intergenic 35.0%
CAAAGGAAATACTACCTTCA+CGG - tig0019826:70701-70720 None:intergenic 35.0%
!! GCAAAGTTTGATGGATTACT+TGG + tig0019826:70726-70745 Msa1376760:CDS 35.0%
CACTAAAGGTCTGTTTGAAT+TGG - tig0019826:71105-71124 None:intergenic 35.0%
AGTGATCCATTATACATCAC+AGG + tig0019826:71121-71140 Msa1376760:intron 35.0%
!!! TGTTCTCTTTTTGGCTCAAT+GGG + tig0019826:71181-71200 Msa1376760:CDS 35.0%
GTTGATCCAAATCACTTCAA+AGG + tig0019826:71246-71265 Msa1376760:CDS 35.0%
GGAGTAATTTAGTGGTTGAA+AGG + tig0019826:71503-71522 Msa1376760:intron 35.0%
!!! TTATTTTTAGGCGTTTGCGA+AGG + tig0019826:71666-71685 Msa1376760:intron 35.0%
! ACAACAGTCTGAAATTCAAC+CGG - tig0019826:71807-71826 None:intergenic 35.0%
ACTGAAATCAACCATGCTAT+TGG + tig0019826:71828-71847 Msa1376760:CDS 35.0%
!! AGTTCTGAGTGTAGAATGTA+AGG + tig0019826:71860-71879 Msa1376760:CDS 35.0%
!! CTGAATATGGAGAGTTGATA+TGG + tig0019826:71892-71911 Msa1376760:CDS 35.0%
!! TGTTCACAAGTTGGTTTATG+TGG + tig0019826:72066-72085 Msa1376760:CDS 35.0%
!! ACTTTCGTTTGAGTTGATTC+TGG - tig0019826:72469-72488 None:intergenic 35.0%
CCAAACATTTCGTTCACTAT+CGG + tig0019826:72688-72707 Msa1376760:CDS 35.0%
!! ATCAAGAGTAAGTTAGCCTT+TGG - tig0019826:73052-73071 None:intergenic 35.0%
!! TTCTTGGCGATGTTTTTATG+AGG + tig0019826:73329-73348 Msa1376760:CDS 35.0%
!! TCTTGGCGATGTTTTTATGA+GGG + tig0019826:73330-73349 Msa1376760:CDS 35.0%
TATCACACTGTCTTTGACTA+TGG + tig0019826:73355-73374 Msa1376760:CDS 35.0%
GCACGTATGTAACTACTTAA+TGG + tig0019826:73480-73499 Msa1376760:three_prime_UTR 35.0%
ATGTAACTACTTAATGGTGC+AGG + tig0019826:73486-73505 Msa1376760:three_prime_UTR 35.0%
CTCTTTCAACACACTGAAAT+TGG + tig0019826:73683-73702 Msa1376760:intron 35.0%
ACAAAATCCATTGTACGAGC+AGG + tig0019826:68789-68808 Msa1376760:five_prime_UTR 40.0%
AGCATACCAAAAGTGAAGGT+GGG - tig0019826:68905-68924 None:intergenic 40.0%
AAGCATACCAAAAGTGAAGG+TGG - tig0019826:68906-68925 None:intergenic 40.0%
! GGAAAGCATACCAAAAGTGA+AGG - tig0019826:68909-68928 None:intergenic 40.0%
!! TTCTGGTTTGTTGATGGTCT+TGG + tig0019826:69541-69560 Msa1376760:intron 40.0%
CACAAATACTTGTTCGCCAT+AGG - tig0019826:69864-69883 None:intergenic 40.0%
CTATGGCGAACAAGTATTTG+TGG + tig0019826:69862-69881 Msa1376760:exon 40.0%
AGGAAGAAGTGAGCATGTTA+AGG - tig0019826:69907-69926 None:intergenic 40.0%
CTTCTTCCTTCTTTCTCCTA+TGG + tig0019826:69918-69937 Msa1376760:CDS 40.0%
! TTGATAGCATTAGAGCTGCT+AGG + tig0019826:69979-69998 Msa1376760:CDS 40.0%
ATGACATTAAATGTCTGCGG+GGG - tig0019826:70146-70165 None:intergenic 40.0%
!! ACTTTGATGATGGAACCCAA+AGG - tig0019826:70190-70209 None:intergenic 40.0%
CTTTGCCTTGTACCAATGAT+GGG - tig0019826:70320-70339 None:intergenic 40.0%
TCTTTGCCTTGTACCAATGA+TGG - tig0019826:70321-70340 None:intergenic 40.0%
! TATGGATCTGGAGCAATATC+TGG + tig0019826:70510-70529 Msa1376760:CDS 40.0%
AGGTAGTATTTCCTTTGTGC+TGG + tig0019826:70704-70723 Msa1376760:CDS 40.0%
ATCAAACTTTGCCAGCACAA+AGG - tig0019826:70718-70737 None:intergenic 40.0%
! TTTGTGCTGGCAAAGTTTGA+TGG + tig0019826:70717-70736 Msa1376760:CDS 40.0%
!! TTTGATGGATTACTTGGGCT+TGG + tig0019826:70732-70751 Msa1376760:CDS 40.0%
TTGAAAATGCTGTGCCAGTA+TGG + tig0019826:70772-70791 Msa1376760:intron 40.0%
CGTCGAAAAACATACCATAC+TGG - tig0019826:70789-70808 None:intergenic 40.0%
ACATCACAGGTACAAAATGG+TGG + tig0019826:71134-71153 Msa1376760:intron 40.0%
GCAAGATCTTGTAAATGAGC+AGG + tig0019826:71158-71177 Msa1376760:intron 40.0%
! ATGAGCAGGTGTTCTCTTTT+TGG + tig0019826:71172-71191 Msa1376760:intron 40.0%
!!! GTGTTCTCTTTTTGGCTCAA+TGG + tig0019826:71180-71199 Msa1376760:CDS 40.0%
!!! GTTCTCTTTTTGGCTCAATG+GGG + tig0019826:71182-71201 Msa1376760:CDS 40.0%
ATATGTCCCAGTCACTCAAA+AGG + tig0019826:71278-71297 Msa1376760:CDS 40.0%
TATGTCCCAGTCACTCAAAA+GGG + tig0019826:71279-71298 Msa1376760:CDS 40.0%
!! AATAGCCCTTTTGAGTGACT+GGG - tig0019826:71287-71306 None:intergenic 40.0%
TCGCCCATTTCAATCTGAAA+AGG - tig0019826:71397-71416 None:intergenic 40.0%
!!! GAAATGGGCGACTTTTTCAT+TGG + tig0019826:71406-71425 Msa1376760:CDS 40.0%
CACATTGTACATATGAGAGG+AGG - tig0019826:71577-71596 None:intergenic 40.0%
!! AGAGTTGATATGGGATCTCT+TGG + tig0019826:71902-71921 Msa1376760:CDS 40.0%
TAACAAGAAACACTGAAGGG+TGG - tig0019826:71950-71969 None:intergenic 40.0%
GGGTAACAAGAAACACTGAA+GGG - tig0019826:71953-71972 None:intergenic 40.0%
AGGGTAACAAGAAACACTGA+AGG - tig0019826:71954-71973 None:intergenic 40.0%
!! TCACAAGTTGGTTTATGTGG+TGG + tig0019826:72069-72088 Msa1376760:CDS 40.0%
TTTGTCACTGGGAAGAGTTT+AGG + tig0019826:72274-72293 Msa1376760:intron 40.0%
TAGCATTGCAATGCTGGAAT+AGG - tig0019826:72301-72320 None:intergenic 40.0%
ATCTTGTAGCATTGCAATGC+TGG - tig0019826:72307-72326 None:intergenic 40.0%
GATTGAGATGGTGACTGAAA+AGG + tig0019826:72376-72395 Msa1376760:CDS 40.0%
ATGGTGACTGAAAAGGAACA+GGG + tig0019826:72383-72402 Msa1376760:CDS 40.0%
ACTCAAACGAAAGTCAACCA+AGG + tig0019826:72475-72494 Msa1376760:CDS 40.0%
!! GTAAGCCTTTTGAAAGATCC+TGG + tig0019826:72524-72543 Msa1376760:intron 40.0%
TCTGACCAGGATCTTTCAAA+AGG - tig0019826:72532-72551 None:intergenic 40.0%
ATTAACTCAGGTTTCTGACC+AGG - tig0019826:72545-72564 None:intergenic 40.0%
CCGATAGTGAACGAAATGTT+TGG - tig0019826:72691-72710 None:intergenic 40.0%
TTTCAAAAGCTAACCTGCTC+TGG - tig0019826:72736-72755 None:intergenic 40.0%
! CAATTATGCTGCCCATCTTT+TGG - tig0019826:72979-72998 None:intergenic 40.0%
ATTGCAACTGTCTGTCTTAG+TGG + tig0019826:73150-73169 Msa1376760:CDS 40.0%
TTGCAACTGTCTGTCTTAGT+GGG + tig0019826:73151-73170 Msa1376760:CDS 40.0%
! TTTTGACATTCCTCCTCCAA+GGG + tig0019826:73182-73201 Msa1376760:CDS 40.0%
GTAAGAGAAACATACCAGAG+AGG - tig0019826:73210-73229 None:intergenic 40.0%
GACTATGGAAATCTCCAACT+TGG + tig0019826:73370-73389 Msa1376760:CDS 40.0%
AAACTACCACAAGTCTCACT+AGG - tig0019826:73410-73429 None:intergenic 40.0%
GGATACATAATGCTTGGACT+GGG - tig0019826:73727-73746 None:intergenic 40.0%
TGGATACATAATGCTTGGAC+TGG - tig0019826:73728-73747 None:intergenic 40.0%
ACTCTTTCCTGCTCGTACAA+TGG - tig0019826:68799-68818 None:intergenic 45.0%
AGGAAAGAGTCCACTGTTTC+TGG + tig0019826:68809-68828 Msa1376760:five_prime_UTR 45.0%
! TTCTACCCCACCTTCACTTT+TGG + tig0019826:68896-68915 Msa1376760:five_prime_UTR 45.0%
GCATACCAAAAGTGAAGGTG+GGG - tig0019826:68904-68923 None:intergenic 45.0%
TAGATTCACGCTATCCACGT+GGG - tig0019826:69170-69189 None:intergenic 45.0%
ATAGATTCACGCTATCCACG+TGG - tig0019826:69171-69190 None:intergenic 45.0%
AGTCAGCAACAATCGAAGGT+AGG - tig0019826:69377-69396 None:intergenic 45.0%
CGATATCCTAACCGATCAGT+AGG + tig0019826:69418-69437 Msa1376760:intron 45.0%
TGAGTGAAGATGTGGTGTTC+TGG + tig0019826:69524-69543 Msa1376760:intron 45.0%
!! GTGGTGTTCTGGTTTGTTGA+TGG + tig0019826:69535-69554 Msa1376760:intron 45.0%
AAACGTCAACGAAGTTGGAC+AGG + tig0019826:69750-69769 Msa1376760:intron 45.0%
TACTTTCTTCTTACCCTGCC+TGG + tig0019826:69829-69848 Msa1376760:intron 45.0%
! TGTGGGTTGCTTTCTGTTTC+TGG + tig0019826:69880-69899 Msa1376760:CDS 45.0%
! GTGGGTTGCTTTCTGTTTCT+GGG + tig0019826:69881-69900 Msa1376760:CDS 45.0%
TAGCATTAGAGCTGCTAGGA+TGG + tig0019826:69983-70002 Msa1376760:CDS 45.0%
AAAGTCAAGCAGACCTGTGT+TGG + tig0019826:70019-70038 Msa1376760:CDS 45.0%
AAGTCAAGCAGACCTGTGTT+GGG + tig0019826:70020-70039 Msa1376760:CDS 45.0%
TGATCATATGCACCCAACAC+AGG - tig0019826:70035-70054 None:intergenic 45.0%
!! CAAAGGTACTATGGCATCGT+CGG - tig0019826:70075-70094 None:intergenic 45.0%
CGATGCCATAGTACCTTTGA+AGG + tig0019826:70076-70095 Msa1376760:CDS 45.0%
ATACCGGAAGTTCGAACCTT+TGG + tig0019826:70171-70190 Msa1376760:CDS 45.0%
TACCGGAAGTTCGAACCTTT+GGG + tig0019826:70172-70191 Msa1376760:CDS 45.0%
AACCCAAAGGTTCGAACTTC+CGG - tig0019826:70177-70196 None:intergenic 45.0%
CTACACCCATCATTGGTACA+AGG + tig0019826:70312-70331 Msa1376760:CDS 45.0%
ACTTGGCGATGTTGTTGTCA+AGG + tig0019826:70557-70576 Msa1376760:CDS 45.0%
CGATGTTGTTGTCAAGGATG+TGG + tig0019826:70563-70582 Msa1376760:CDS 45.0%
! ATTACTTGGGCTTGGCTTTC+AGG + tig0019826:70740-70759 Msa1376760:CDS 45.0%
TGGGGATCCAAAAGCGAAAA+AGG + tig0019826:71200-71219 Msa1376760:CDS 45.0%
GGGGATCCAAAAGCGAAAAA+GGG + tig0019826:71201-71220 Msa1376760:CDS 45.0%
GATCCAAAAGCGAAAAAGGG+TGG + tig0019826:71204-71223 Msa1376760:CDS 45.0%
!! TCACCACCCTTTTTCGCTTT+TGG - tig0019826:71210-71229 None:intergenic 45.0%
AAGGGTGGTGAGCTAATTCT+TGG + tig0019826:71219-71238 Msa1376760:CDS 45.0%
AGGGTGGTGAGCTAATTCTT+GGG + tig0019826:71220-71239 Msa1376760:CDS 45.0%
!! CAATAGCCCTTTTGAGTGAC+TGG - tig0019826:71288-71307 None:intergenic 45.0%
CAGTCACTCAAAAGGGCTAT+TGG + tig0019826:71286-71305 Msa1376760:CDS 45.0%
!!! ATGGGCGACTTTTTCATTGG+AGG + tig0019826:71409-71428 Msa1376760:CDS 45.0%
TTCATTGGAGGTCTCTCAAC+AGG + tig0019826:71421-71440 Msa1376760:CDS 45.0%
!! TTTTTAGGCGTTTGCGAAGG+TGG + tig0019826:71669-71688 Msa1376760:intron 45.0%
! TGTGCTGCTATTGTGGATTC+AGG + tig0019826:71693-71712 Msa1376760:CDS 45.0%
TCAGGAACATCATTGCTTGC+TGG + tig0019826:71711-71730 Msa1376760:CDS 45.0%
AACCATGCTATTGGAGCTGA+AGG + tig0019826:71837-71856 Msa1376760:CDS 45.0%
! ATATGGGATCTCTTGGTAGC+AGG + tig0019826:71909-71928 Msa1376760:CDS 45.0%
! TATGGGATCTCTTGGTAGCA+GGG + tig0019826:71910-71929 Msa1376760:CDS 45.0%
AGAGCAACGACTACAAGTCA+GGG - tig0019826:71973-71992 None:intergenic 45.0%
AAGAGCAACGACTACAAGTC+AGG - tig0019826:71974-71993 None:intergenic 45.0%
!!! ATTGATTTTCAGGTACGGCC+TGG + tig0019826:72036-72055 Msa1376760:intron 45.0%
ACTTGTGAACACACATCACC+AGG - tig0019826:72057-72076 None:intergenic 45.0%
GGTGATGTGTGTTCACAAGT+TGG + tig0019826:72057-72076 Msa1376760:CDS 45.0%
TTGGTTTATGTGGTGGCAAG+AGG + tig0019826:72076-72095 Msa1376760:CDS 45.0%
TGGTTTATGTGGTGGCAAGA+GGG + tig0019826:72077-72096 Msa1376760:CDS 45.0%
! GCAAGAGGGTACAATCTAAG+AGG + tig0019826:72091-72110 Msa1376760:CDS 45.0%
TCTTTGAATCCTCTGCAGCA+TGG + tig0019826:72352-72371 Msa1376760:intron 45.0%
CTTTGAATCCTCTGCAGCAT+GGG + tig0019826:72353-72372 Msa1376760:intron 45.0%
TTTGAATCCTCTGCAGCATG+GGG + tig0019826:72354-72373 Msa1376760:intron 45.0%
GATGGTGACTGAAAAGGAAC+AGG + tig0019826:72382-72401 Msa1376760:CDS 45.0%
CCAAATCACAAGCATCTGAC+AGG - tig0019826:72444-72463 None:intergenic 45.0%
CCTGTCAGATGCTTGTGATT+TGG + tig0019826:72441-72460 Msa1376760:CDS 45.0%
!! TCTACTACCGACTCTCCATT+TGG - tig0019826:72646-72665 None:intergenic 45.0%
!! ATGCTGCCCATCTTTTGGAA+AGG - tig0019826:72974-72993 None:intergenic 45.0%
! CTTTTGACATTCCTCCTCCA+AGG + tig0019826:73181-73200 Msa1376760:CDS 45.0%
TTTGACATTCCTCCTCCAAG+GGG + tig0019826:73183-73202 Msa1376760:CDS 45.0%
CAGCTTCAGCAAAACCAAGT+TGG - tig0019826:73387-73406 None:intergenic 45.0%
AGATTCACGCTATCCACGTG+GGG - tig0019826:69169-69188 None:intergenic 50.0%
TCCTAACCGATCAGTAGGCA+AGG + tig0019826:69423-69442 Msa1376760:intron 50.0%
TCCTTGCCTACTGATCGGTT+AGG - tig0019826:69427-69446 None:intergenic 50.0%
AACCGATCAGTAGGCAAGGA+AGG + tig0019826:69427-69446 Msa1376760:intron 50.0%
CACCTTCCTTGCCTACTGAT+CGG - tig0019826:69432-69451 None:intergenic 50.0%
! TCAGTAGGCAAGGAAGGTGT+TGG + tig0019826:69433-69452 Msa1376760:intron 50.0%
TAGGGAAAATCTGCCAGGCA+GGG - tig0019826:69845-69864 None:intergenic 50.0%
ATAGGGAAAATCTGCCAGGC+AGG - tig0019826:69846-69865 None:intergenic 50.0%
! TGCCTGGCAGATTTTCCCTA+TGG + tig0019826:69845-69864 Msa1376760:intron 50.0%
GGCATCGTCGGATGATTTAC+TGG - tig0019826:70063-70082 None:intergenic 50.0%
TTGCCTGCTACACCCATCAT+TGG + tig0019826:70305-70324 Msa1376760:CDS 50.0%
!! GTACCAATGATGGGTGTAGC+AGG - tig0019826:70311-70330 None:intergenic 50.0%
TTCATTGAGGCTACCCGTGA+AGG + tig0019826:70684-70703 Msa1376760:CDS 50.0%
GGGTGGTGAGCTAATTCTTG+GGG + tig0019826:71221-71240 Msa1376760:CDS 50.0%
GGTGGTGAGCTAATTCTTGG+GGG + tig0019826:71222-71241 Msa1376760:CDS 50.0%
CACTCAAAAGGGCTATTGGC+AGG + tig0019826:71290-71309 Msa1376760:CDS 50.0%
CTCCTTCAGCTCCAATAGCA+TGG - tig0019826:71842-71861 None:intergenic 50.0%
! ATGGGATCTCTTGGTAGCAG+GGG + tig0019826:71911-71930 Msa1376760:CDS 50.0%
GAGAGCTTGCCAAGTCCAAA+TGG + tig0019826:72628-72647 Msa1376760:CDS 50.0%
GCCAAGTCCAAATGGAGAGT+CGG + tig0019826:72636-72655 Msa1376760:CDS 50.0%
! ACCGACTCTCCATTTGGACT+TGG - tig0019826:72640-72659 None:intergenic 50.0%
AAGCTGCCTAGTGAGACTTG+TGG + tig0019826:73401-73420 Msa1376760:exon 50.0%
GGAAGGTCGTCCAGAAACAG+TGG - tig0019826:68822-68841 None:intergenic 55.0%
CGCCATAGGGAAAATCTGCC+AGG - tig0019826:69850-69869 None:intergenic 55.0%
! AGGTGGCTGTGCTGCTATTG+TGG + tig0019826:71686-71705 Msa1376760:CDS 55.0%
TCTCAATCCCCATGCTGCAG+AGG - tig0019826:72364-72383 None:intergenic 55.0%
CTGCAGCATGGGGATTGAGA+TGG + tig0019826:72364-72383 Msa1376760:intron 55.0%
TTTCGTCCTCAGTCCAGAGC+AGG + tig0019826:72720-72739 Msa1376760:CDS 55.0%
! AGCTAACCTGCTCTGGACTG+AGG - tig0019826:72729-72748 None:intergenic 55.0%
ACATACCAGAGAGGACCCCT+TGG - tig0019826:73201-73220 None:intergenic 55.0%
TACCAGAGAGGACCCCTTGG+AGG - tig0019826:73198-73217 None:intergenic 60.0%
CAGAGAGGACCCCTTGGAGG+AGG - tig0019826:73195-73214 None:intergenic 65.0%
CTCCTCCAAGGGGTCCTCTC+TGG + tig0019826:73193-73212 Msa1376760:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0019826 gene 68757 73764 68757 ID=Msa1376760;Name=Msa1376760
tig0019826 mRNA 68757 73764 68757 ID=Msa1376760-mRNA-1;Parent=Msa1376760;Name=Msa1376760-mRNA-1;_AED=0.11;_eAED=0.11;_QI=170|0.92|0.86|1|0.92|0.86|15|284|488
tig0019826 exon 68757 68917 68757 ID=Msa1376760-mRNA-1:exon:5309;Parent=Msa1376760-mRNA-1
tig0019826 exon 69855 70220 69855 ID=Msa1376760-mRNA-1:exon:5310;Parent=Msa1376760-mRNA-1
tig0019826 exon 70304 70364 70304 ID=Msa1376760-mRNA-1:exon:5311;Parent=Msa1376760-mRNA-1
tig0019826 exon 70490 70584 70490 ID=Msa1376760-mRNA-1:exon:5312;Parent=Msa1376760-mRNA-1
tig0019826 exon 70681 70770 70681 ID=Msa1376760-mRNA-1:exon:5313;Parent=Msa1376760-mRNA-1
tig0019826 exon 71180 71311 71180 ID=Msa1376760-mRNA-1:exon:5314;Parent=Msa1376760-mRNA-1
tig0019826 exon 71403 71442 71403 ID=Msa1376760-mRNA-1:exon:5315;Parent=Msa1376760-mRNA-1
tig0019826 exon 71676 71740 71676 ID=Msa1376760-mRNA-1:exon:5316;Parent=Msa1376760-mRNA-1
tig0019826 exon 71819 71932 71819 ID=Msa1376760-mRNA-1:exon:5317;Parent=Msa1376760-mRNA-1
tig0019826 exon 72048 72112 72048 ID=Msa1376760-mRNA-1:exon:5318;Parent=Msa1376760-mRNA-1
tig0019826 exon 72370 72523 72370 ID=Msa1376760-mRNA-1:exon:5319;Parent=Msa1376760-mRNA-1
tig0019826 exon 72622 72741 72622 ID=Msa1376760-mRNA-1:exon:5320;Parent=Msa1376760-mRNA-1
tig0019826 exon 73126 73214 73126 ID=Msa1376760-mRNA-1:exon:5321;Parent=Msa1376760-mRNA-1
tig0019826 exon 73327 73664 73327 ID=Msa1376760-mRNA-1:exon:5322;Parent=Msa1376760-mRNA-1
tig0019826 exon 73734 73764 73734 ID=Msa1376760-mRNA-1:exon:5323;Parent=Msa1376760-mRNA-1
tig0019826 five_prime_UTR 68757 68917 68757 ID=Msa1376760-mRNA-1:five_prime_utr;Parent=Msa1376760-mRNA-1
tig0019826 five_prime_UTR 69855 69863 69855 ID=Msa1376760-mRNA-1:five_prime_utr;Parent=Msa1376760-mRNA-1
tig0019826 CDS 69864 70220 69864 ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1
tig0019826 CDS 70304 70364 70304 ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1
tig0019826 CDS 70490 70584 70490 ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1
tig0019826 CDS 70681 70770 70681 ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1
tig0019826 CDS 71180 71311 71180 ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1
tig0019826 CDS 71403 71442 71403 ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1
tig0019826 CDS 71676 71740 71676 ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1
tig0019826 CDS 71819 71932 71819 ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1
tig0019826 CDS 72048 72112 72048 ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1
tig0019826 CDS 72370 72523 72370 ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1
tig0019826 CDS 72622 72741 72622 ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1
tig0019826 CDS 73126 73214 73126 ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1
tig0019826 CDS 73327 73411 73327 ID=Msa1376760-mRNA-1:cds;Parent=Msa1376760-mRNA-1
tig0019826 three_prime_UTR 73412 73664 73412 ID=Msa1376760-mRNA-1:three_prime_utr;Parent=Msa1376760-mRNA-1
tig0019826 three_prime_UTR 73734 73764 73734 ID=Msa1376760-mRNA-1:three_prime_utr;Parent=Msa1376760-mRNA-1
Gene Sequence

>Msa1376760

ATGGCGAACAAGTATTTGTGGGTTGCTTTCTGTTTCTGGGCCTTAACATGCTCACTTCTTCCTTCTTTCTCCTATGGATTTATGAAAATTGATTTGAAGAAGAGAACTCTAGATCTTGATAGCATTAGAGCTGCTAGGATGGTAAGAGAAAAGCTAAAGTCAAGCAGACCTGTGTTGGGTGCATATGATCAGTATACCAGTAAATCATCCGACGATGCCATAGTACCTTTGAAGGATTATTTGAATGCACAATATTATGGAGAGATTGGAATTGGTACACCCCCGCAGACATTTAATGTCATATTTGATACCGGAAGTTCGAACCTTTGGGTTCCATCATCAAAGTGCTATTTTTCTATTGCCTGCTACACCCATCATTGGTACAAGGCAAAGAAATCCAAAACATATACTAAGAATGGAACATCATGTAAAATAGCATATGGATCTGGAGCAATATCTGGTTTTTTCAGTCAAGATAATGTTAAACTTGGCGATGTTGTTGTCAAGGATGTGGATTTCATTGAGGCTACCCGTGAAGGTAGTATTTCCTTTGTGCTGGCAAAGTTTGATGGATTACTTGGGCTTGGCTTTCAGGAGATCTCTGTGTTCTCTTTTTGGCTCAATGGGGATCCAAAAGCGAAAAAGGGTGGTGAGCTAATTCTTGGGGGTGTTGATCCAAATCACTTCAAAGGAAAACATACATATGTCCCAGTCACTCAAAAGGGCTATTGGCAGATTGAAATGGGCGACTTTTTCATTGGAGGTCTCTCAACAGGCGTTTGCGAAGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCATTGCTTGCTGGTCCAACTACTGTTGTGACTGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTGAGTGTAGAATGTAAGGAAATTGTTACTGAATATGGAGAGTTGATATGGGATCTCTTGGTAGCAGGGGTACGGCCTGGTGATGTGTGTTCACAAGTTGGTTTATGTGGTGGCAAGAGGGTACAATCTAAGAGCATGGGGATTGAGATGGTGACTGAAAAGGAACAGGGAGAGTTGTCTGCTAAAGATACTGCTTTGTGTTCTTCCTGTCAGATGCTTGTGATTTGGATCCAGAATCAACTCAAACGAAAGTCAACCAAGGATAAAATATTCAACTACGTAAATCAACTCTGCGAGAGCTTGCCAAGTCCAAATGGAGAGTCGGTAGTAGACTGTAATAGCATTTATCAATTGCCAAACATTTCGTTCACTATCGGAGAGAAATCTTTCGTCCTCAGTCCAGAGCAGTATATTTTGAAAACTGGAGAAGGCATTGCAACTGTCTGTCTTAGTGGGTTTATTGCTTTTGACATTCCTCCTCCAAGGGGTCCTCTCTGGATTCTTGGCGATGTTTTTATGAGGGTATATCACACTGTCTTTGACTATGGAAATCTCCAACTTGGTTTTGCTGAAGCTGCCTAG

Protein sequence

>Msa1376760

MANKYLWVAFCFWALTCSLLPSFSYGFMKIDLKKRTLDLDSIRAARMVREKLKSSRPVLGAYDQYTSKSSDDAIVPLKDYLNAQYYGEIGIGTPPQTFNVIFDTGSSNLWVPSSKCYFSIACYTHHWYKAKKSKTYTKNGTSCKIAYGSGAISGFFSQDNVKLGDVVVKDVDFIEATREGSISFVLAKFDGLLGLGFQEISVFSFWLNGDPKAKKGGELILGGVDPNHFKGKHTYVPVTQKGYWQIEMGDFFIGGLSTGVCEGGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSVECKEIVTEYGELIWDLLVAGVRPGDVCSQVGLCGGKRVQSKSMGIEMVTEKEQGELSAKDTALCSSCQMLVIWIQNQLKRKSTKDKIFNYVNQLCESLPSPNGESVVDCNSIYQLPNISFTIGEKSFVLSPEQYILKTGEGIATVCLSGFIAFDIPPPRGPLWILGDVFMRVYHTVFDYGNLQLGFAEAA*