Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029990 | sp|Q9SS87|SEOB_ARATH | 26.308 | 707 | 422 | 25 | 16 | 640 | 39 | 728 | 3.23e-49 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0029990 | 0.902360 | 1.050302e-78 | -8.615850e-47 |
| Msa0015570 | Msa0029990 | 0.806694 | 7.263817e-50 | -8.615850e-47 |
| Msa0029960 | Msa0029990 | 0.885195 | 1.002521e-71 | -8.615850e-47 |
| Msa0029990 | Msa0064120 | 0.882543 | 9.536418e-71 | -8.615850e-47 |
| Msa0029990 | Msa0071840 | 0.989279 | 1.908412e-177 | -8.615850e-47 |
| Msa0029990 | Msa0071850 | 0.839276 | 1.746026e-57 | -8.615850e-47 |
| Msa0029990 | Msa0071860 | 0.825610 | 4.266717e-54 | -8.615850e-47 |
| Msa0029990 | Msa0072520 | 0.801230 | 9.930506e-49 | -8.615850e-47 |
| Msa0029990 | Msa0108880 | 0.881710 | 1.914827e-70 | -8.615850e-47 |
| Msa0029990 | Msa0121330 | 0.800710 | 1.268621e-48 | -8.615850e-47 |
| Msa0029990 | Msa0125200 | 0.848298 | 6.702631e-60 | -8.615850e-47 |
| Msa0029990 | Msa0125210 | 0.839249 | 1.774085e-57 | -8.615850e-47 |
| Msa0029990 | Msa0125220 | 0.841167 | 5.599319e-58 | -8.615850e-47 |
| Msa0029990 | Msa0125590 | 0.808378 | 3.189816e-50 | -8.615850e-47 |
| Msa0029990 | Msa0132700 | 0.808551 | 2.929906e-50 | -8.615850e-47 |
| Msa0029990 | Msa0141640 | 0.808242 | 3.410077e-50 | -8.615850e-47 |
| Msa0029990 | Msa0146650 | 0.804393 | 2.207516e-49 | -8.615850e-47 |
| Msa0029990 | Msa0155180 | 0.904838 | 8.069716e-80 | -8.615850e-47 |
| Msa0029990 | Msa0156050 | 0.808771 | 2.629000e-50 | -8.615850e-47 |
| Msa0029990 | Msa0156090 | 0.800013 | 1.758679e-48 | -8.615850e-47 |
| Msa0029990 | Msa0170070 | 0.823693 | 1.207398e-53 | -8.615850e-47 |
| Msa0029990 | Msa0177140 | 0.804087 | 2.556538e-49 | -8.615850e-47 |
| Msa0029990 | Msa0181880 | 0.806862 | 6.694042e-50 | -8.615850e-47 |
| Msa0029990 | Msa0359010 | 0.826048 | 3.359427e-54 | -8.615850e-47 |
| Msa0029990 | Msa0373170 | 0.802698 | 4.958609e-49 | -8.615850e-47 |
| Msa0029990 | Msa0382530 | 0.846688 | 1.856210e-59 | -8.615850e-47 |
| Msa0029990 | Msa0432320 | 0.834388 | 3.084767e-56 | -8.615850e-47 |
| Msa0029990 | Msa0433760 | 0.810838 | 9.444952e-51 | -8.615850e-47 |
| Msa0029990 | Msa0451170 | 0.832629 | 8.478633e-56 | -8.615850e-47 |
| Msa0029990 | Msa0466520 | 0.810178 | 1.311745e-50 | -8.615850e-47 |
| Msa0029990 | Msa0467690 | 0.802263 | 6.095550e-49 | -8.615850e-47 |
| Msa0029990 | Msa0477630 | 0.801778 | 7.667885e-49 | -8.615850e-47 |
| Msa0029990 | Msa0498610 | 0.822746 | 2.008341e-53 | -8.615850e-47 |
| Msa0029990 | Msa0514020 | 0.807467 | 4.982869e-50 | -8.615850e-47 |
| Msa0029990 | Msa0520870 | 0.804711 | 1.895046e-49 | -8.615850e-47 |
| Msa0029990 | Msa0521680 | 0.820189 | 7.821707e-53 | -8.615850e-47 |
| Msa0029990 | Msa0525210 | 0.849500 | 3.107299e-60 | -8.615850e-47 |
| Msa0029990 | Msa0541740 | 0.812943 | 3.286325e-51 | -8.615850e-47 |
| Msa0029990 | Msa0554300 | 0.801421 | 9.077708e-49 | -8.615850e-47 |
| Msa0029990 | Msa0564980 | 0.814930 | 1.198644e-51 | -8.615850e-47 |
| Msa0029990 | Msa0570010 | 0.835501 | 1.617642e-56 | -8.615850e-47 |
| Msa0029990 | Msa0580810 | 0.804113 | 2.524683e-49 | -8.615850e-47 |
| Msa0029990 | Msa0588920 | 0.822084 | 2.861567e-53 | -8.615850e-47 |
| Msa0029990 | Msa0612520 | 0.801221 | 9.973437e-49 | -8.615850e-47 |
| Msa0029990 | Msa0619710 | 0.816577 | 5.147108e-52 | -8.615850e-47 |
| Msa0029990 | Msa0621710 | 0.801771 | 7.694258e-49 | -8.615850e-47 |
| Msa0029990 | Msa0648760 | 0.805182 | 1.510558e-49 | -8.615850e-47 |
| Msa0029990 | Msa0657210 | 0.814594 | 1.422669e-51 | -8.615850e-47 |
| Msa0029990 | Msa0666700 | 0.805318 | 1.414546e-49 | -8.615850e-47 |
| Msa0029990 | Msa0695560 | 0.816409 | 5.614576e-52 | -8.615850e-47 |
| Msa0029990 | Msa0701250 | 0.811354 | 7.300750e-51 | -8.615850e-47 |
| Msa0029990 | Msa0706150 | 0.826854 | 2.158145e-54 | -8.615850e-47 |
| Msa0029990 | Msa0716480 | 0.801206 | 1.004619e-48 | -8.615850e-47 |
| Msa0029990 | Msa0738700 | 0.803534 | 3.329431e-49 | -8.615850e-47 |
| Msa0029990 | Msa0740090 | 0.841635 | 4.216579e-58 | -8.615850e-47 |
| Msa0029990 | Msa0740710 | 0.817810 | 2.717893e-52 | -8.615850e-47 |
| Msa0029990 | Msa0780910 | 0.813630 | 2.322709e-51 | -8.615850e-47 |
| Msa0029990 | Msa0782750 | 0.820412 | 6.953495e-53 | -8.615850e-47 |
| Msa0029990 | Msa0820380 | 0.824908 | 6.254151e-54 | -8.615850e-47 |
| Msa0029990 | Msa0821160 | 0.800061 | 1.719909e-48 | -8.615850e-47 |
| Msa0029990 | Msa0837460 | 0.807453 | 5.017300e-50 | -8.615850e-47 |
| Msa0029990 | Msa0900760 | 0.810400 | 1.174655e-50 | -8.615850e-47 |
| Msa0029990 | Msa0909760 | 0.805033 | 1.622736e-49 | -8.615850e-47 |
| Msa0029990 | Msa1000970 | 0.803116 | 4.065086e-49 | -8.615850e-47 |
| Msa0029990 | Msa1014320 | 0.873483 | 1.420235e-67 | -8.615850e-47 |
| Msa0029990 | Msa1021780 | 0.803294 | 3.733251e-49 | -8.615850e-47 |
| Msa0029990 | Msa1055310 | 0.855620 | 5.582542e-62 | -8.615850e-47 |
| Msa0029990 | Msa1061900 | 0.801101 | 1.055510e-48 | -8.615850e-47 |
| Msa0029990 | Msa1078820 | 0.801862 | 7.369470e-49 | -8.615850e-47 |
| Msa0029990 | Msa1078880 | 0.816842 | 4.490001e-52 | -8.615850e-47 |
| Msa0029990 | Msa1078970 | 0.803262 | 3.791872e-49 | -8.615850e-47 |
| Msa0029990 | Msa1079640 | 0.801343 | 9.415686e-49 | -8.615850e-47 |
| Msa0029990 | Msa1123970 | 0.801537 | 8.594955e-49 | -8.615850e-47 |
| Msa0029990 | Msa1169190 | 0.815209 | 1.039277e-51 | -8.615850e-47 |
| Msa0029990 | Msa1169650 | 0.805343 | 1.397175e-49 | -8.615850e-47 |
| Msa0029990 | Msa1188170 | 0.810181 | 1.309488e-50 | -8.615850e-47 |
| Msa0029990 | Msa1209320 | 0.809597 | 1.748831e-50 | -8.615850e-47 |
| Msa0029990 | Msa1219770 | 0.804117 | 2.519493e-49 | -8.615850e-47 |
| Msa0029990 | Msa1254540 | 0.813955 | 1.969126e-51 | -8.615850e-47 |
| Msa0029990 | Msa1263780 | 0.813923 | 2.001330e-51 | -8.615850e-47 |
| Msa0029990 | Msa1267930 | 0.812041 | 5.176710e-51 | -8.615850e-47 |
| Msa0029990 | Msa1290380 | 0.813255 | 2.807219e-51 | -8.615850e-47 |
| Msa0029990 | Msa1290440 | 0.809320 | 2.005771e-50 | -8.615850e-47 |
| Msa0029990 | Msa1294460 | 0.800745 | 1.247831e-48 | -8.615850e-47 |
| Msa0029990 | Msa1308850 | 0.803921 | 2.767087e-49 | -8.615850e-47 |
| Msa0029990 | Msa1356220 | 0.800122 | 1.671250e-48 | -8.615850e-47 |
| Msa0029990 | Msa1380120 | 0.811483 | 6.845517e-51 | -8.615850e-47 |
| Msa0029990 | Msa1381030 | 0.807318 | 5.358790e-50 | -8.615850e-47 |
| Msa0029990 | Msa1381470 | 0.820917 | 5.323640e-53 | -8.615850e-47 |
| Msa0029990 | Msa1383310 | 0.808009 | 3.822499e-50 | -8.615850e-47 |
| Msa0029990 | Msa1387500 | 0.815616 | 8.437600e-52 | -8.615850e-47 |
| Msa0029990 | Msa1406720 | 0.813786 | 2.145554e-51 | -8.615850e-47 |
| Msa0029990 | Msa1409410 | 0.806133 | 9.538654e-50 | -8.615850e-47 |
| Msa0029990 | Msa1429860 | 0.833866 | 4.169887e-56 | -8.615850e-47 |
| Msa0029990 | Msa1435630 | 0.848907 | 4.544117e-60 | -8.615850e-47 |
| Msa0029990 | Msa1440430 | 0.805604 | 1.231752e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029990 | MtrunA17_Chr1g0187001 | 93.252 | 652 | 36 | 4 | 1 | 650 | 1 | 646 | 0.0 | 1230 |
| Msa0029990 | MtrunA17_Chr1g0186981 | 58.931 | 655 | 251 | 10 | 2 | 648 | 24 | 668 | 0.0 | 779 |
| Msa0029990 | MtrunA17_Chr1g0186991 | 50.606 | 660 | 296 | 11 | 2 | 643 | 22 | 669 | 0.0 | 660 |
| Msa0029990 | MtrunA17_Chr1g0165791 | 46.972 | 677 | 306 | 16 | 2 | 640 | 16 | 677 | 0.0 | 575 |
| Msa0029990 | MtrunA17_Chr1g0186841 | 32.606 | 687 | 395 | 21 | 3 | 650 | 13 | 670 | 3.28e-102 | 325 |
| Msa0029990 | MtrunA17_Chr1g0186851 | 31.297 | 671 | 396 | 19 | 11 | 643 | 20 | 663 | 1.45e-99 | 318 |
| Msa0029990 | MtrunA17_Chr1g0186861 | 31.540 | 669 | 393 | 17 | 11 | 640 | 20 | 662 | 6.41e-94 | 303 |
| Msa0029990 | MtrunA17_Chr1g0187041 | 31.055 | 673 | 397 | 20 | 11 | 643 | 20 | 665 | 8.44e-93 | 301 |
| Msa0029990 | MtrunA17_Chr1g0186911 | 32.423 | 586 | 351 | 15 | 74 | 640 | 1 | 560 | 1.71e-83 | 273 |
| Msa0029990 | MtrunA17_Chr7g0226571 | 26.621 | 725 | 425 | 26 | 3 | 644 | 14 | 714 | 1.31e-51 | 190 |
| Msa0029990 | MtrunA17_Chr8g0381301 | 26.688 | 637 | 393 | 22 | 60 | 641 | 87 | 704 | 3.01e-47 | 177 |
| Msa0029990 | MtrunA17_Chr8g0364451 | 89.011 | 91 | 10 | 0 | 74 | 164 | 49 | 139 | 7.62e-46 | 160 |
| Msa0029990 | MtrunA17_Chr3g0116601 | 26.167 | 707 | 408 | 27 | 16 | 639 | 29 | 704 | 3.82e-43 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029990 | AT3G01680.1 | 26.308 | 707 | 422 | 25 | 16 | 640 | 39 | 728 | 3.28e-50 | 186 |
| Msa0029990 | AT3G01670.1 | 24.045 | 628 | 358 | 25 | 87 | 639 | 237 | 820 | 2.06e-32 | 134 |
| Msa0029990 | AT3G01670.2 | 24.045 | 628 | 358 | 25 | 87 | 639 | 261 | 844 | 2.19e-32 | 134 |
Find 129 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATATAGCTTATATAATT+TGG | 0.082389 | 1_1:+55873754 | Msa0029990:three_prime_UTR |
| TTATCCCTGTTGCTGTTTAT+TGG | 0.147041 | 1_1:+55871735 | Msa0029990:CDS |
| TAACCATCTTGTTTCCTAAA+AGG | 0.185586 | 1_1:-55872872 | None:intergenic |
| TAAGAGAGCATTTGAACTTT+TGG | 0.194897 | 1_1:+55872756 | Msa0029990:CDS |
| GCTGCTTTCACTTTGGAATA+TGG | 0.196918 | 1_1:+55871494 | Msa0029990:CDS |
| TGGTGGTGCCATCATATATT+AGG | 0.251348 | 1_1:-55872368 | None:intergenic |
| AGCTTCATTGTGCGAAATTC+TGG | 0.265635 | 1_1:-55871167 | None:intergenic |
| AAGAAATCTATAATATCTTT+AGG | 0.277385 | 1_1:-55872312 | None:intergenic |
| CTATATAGCTTATATAATTT+GGG | 0.294561 | 1_1:+55873755 | Msa0029990:three_prime_UTR |
| TTATCAGTAAATAAGTAAAT+TGG | 0.307838 | 1_1:-55870226 | None:intergenic |
| ATATTGATAAATTCAACTTT+AGG | 0.321318 | 1_1:-55870252 | None:intergenic |
| CAAGGGTGGAAAATAAATTA+TGG | 0.321706 | 1_1:+55873886 | Msa0029990:three_prime_UTR |
| AAGAATCAAATCTGGTCTTC+TGG | 0.333101 | 1_1:-55872670 | None:intergenic |
| AGATTTGGTGGAGTTGATAA+TGG | 0.334362 | 1_1:+55871622 | Msa0029990:CDS |
| GTCCCGGTGTTGGGCCCTTT+AGG | 0.341084 | 1_1:+55872791 | Msa0029990:CDS |
| ATTATCCAATAAACAGCAAC+AGG | 0.344665 | 1_1:-55871740 | None:intergenic |
| AAACTAATCAAATCACAAAT+AGG | 0.346211 | 1_1:+55872136 | Msa0029990:CDS |
| ACACGTCCACAAGTAGGATT+TGG | 0.347065 | 1_1:-55873623 | None:intergenic |
| AAGCTTAACATTGTAGCCTT+TGG | 0.355728 | 1_1:-55873399 | None:intergenic |
| CACTGTCCCTGTCACAGATT+TGG | 0.361754 | 1_1:+55871607 | Msa0029990:CDS |
| AATCCACAAGAAGCCATAAA+AGG | 0.362833 | 1_1:+55872596 | Msa0029990:CDS |
| CATTCATTATTTCACCTAAA+GGG | 0.366267 | 1_1:-55872805 | None:intergenic |
| AAGCCTATCGTCCCGGTGTT+GGG | 0.368586 | 1_1:+55872782 | Msa0029990:CDS |
| GCTTCCATTGTTGCTGCTAC+TGG | 0.377751 | 1_1:+55871764 | Msa0029990:CDS |
| AAAGGCATGAAACTATCTTA+AGG | 0.378342 | 1_1:+55873192 | Msa0029990:CDS |
| AATGAAGCTGATTTCTTGCC+AGG | 0.380951 | 1_1:+55871181 | Msa0029990:CDS |
| TGAGACTCATCCAGATCAAA+TGG | 0.384707 | 1_1:-55870306 | None:intergenic |
| ATTCTTCAAAGAATCAAATC+TGG | 0.385444 | 1_1:-55872678 | None:intergenic |
| GACAGATACATATTCATCTA+TGG | 0.392442 | 1_1:+55873116 | Msa0029990:CDS |
| TTCTGTCCAATGTTATACTT+AGG | 0.403805 | 1_1:+55870400 | Msa0029990:CDS |
| AACAGCTGAAAACCTATTCA+TGG | 0.408837 | 1_1:+55871447 | Msa0029990:CDS |
| AACCATCTTGTTTCCTAAAA+GGG | 0.413161 | 1_1:-55872871 | None:intergenic |
| TCATTCATTATTTCACCTAA+AGG | 0.415370 | 1_1:-55872806 | None:intergenic |
| CTCTATCCATGACAGATTGC+AGG | 0.421873 | 1_1:+55872571 | Msa0029990:CDS |
| ATCTATAATATCTTTAGGAT+TGG | 0.424394 | 1_1:-55872307 | None:intergenic |
| TCTTCTGAGTTACCTGGCAT+TGG | 0.425740 | 1_1:+55872728 | Msa0029990:CDS |
| TAAGCCTATCGTCCCGGTGT+TGG | 0.429788 | 1_1:+55872781 | Msa0029990:CDS |
| TGGCATTGGAGAAAACAAAA+AGG | 0.433834 | 1_1:+55873174 | Msa0029990:CDS |
| GAGAGTGAATCTTGGAATAC+AGG | 0.438911 | 1_1:+55872937 | Msa0029990:CDS |
| CCAAGACTTCACCTTGGCAT+TGG | 0.446662 | 1_1:+55873160 | Msa0029990:CDS |
| AAGGCATGAAACTATCTTAA+GGG | 0.447013 | 1_1:+55873193 | Msa0029990:CDS |
| CAAAGAGTATTATGAGACTA+AGG | 0.449914 | 1_1:+55873514 | Msa0029990:CDS |
| TCATCCAGATCAAATGGGTT+TGG | 0.454944 | 1_1:-55870300 | None:intergenic |
| GTGAATCTGAGAGAGGGAAG+AGG | 0.455450 | 1_1:+55873715 | Msa0029990:exon |
| GTTTGGCAGCTTAGTTCCAT+TGG | 0.455711 | 1_1:-55870283 | None:intergenic |
| AATGTTGATAATAATATCAA+TGG | 0.456433 | 1_1:+55873575 | Msa0029990:CDS |
| TTCTGGTCATTGTCAAAGAC+GGG | 0.456488 | 1_1:-55872653 | None:intergenic |
| CTTGTTTACCCTTTGATGCA+AGG | 0.463925 | 1_1:+55873868 | Msa0029990:three_prime_UTR |
| GCTGCCAAACCCATTTGATC+TGG | 0.469209 | 1_1:+55870296 | Msa0029990:CDS |
| ATTCACTTCTTGCCATTCTG+TGG | 0.472187 | 1_1:-55873698 | None:intergenic |
| CACGTCCACAAGTAGGATTT+GGG | 0.476123 | 1_1:-55873622 | None:intergenic |
| GCTGCTACTGGCAACATCAT+TGG | 0.481288 | 1_1:+55871776 | Msa0029990:CDS |
| AGCCCTAGCTGCTTTCACTT+TGG | 0.482034 | 1_1:+55871487 | Msa0029990:CDS |
| CATTGGACAGAATGTGGAAA+AGG | 0.482515 | 1_1:-55870389 | None:intergenic |
| TTGTTTACCCTTTGATGCAA+GGG | 0.484761 | 1_1:+55873869 | Msa0029990:three_prime_UTR |
| CACCTAAAGGGCCCAACACC+GGG | 0.486188 | 1_1:-55872793 | None:intergenic |
| TCAGCCAAAGTTTGATACAT+AGG | 0.489989 | 1_1:-55873437 | None:intergenic |
| CAAACAAGATCCACAAGGTT+GGG | 0.491870 | 1_1:+55873367 | Msa0029990:CDS |
| TGTCCCTGTCACAGATTTGG+TGG | 0.499340 | 1_1:+55871610 | Msa0029990:CDS |
| GTAACAAAGAGAGTGAATCT+TGG | 0.499439 | 1_1:+55872929 | Msa0029990:CDS |
| AACTCCACCAAATCTGTGAC+AGG | 0.502153 | 1_1:-55871614 | None:intergenic |
| TCTGGATGAGTCTCAAATCC+TGG | 0.503173 | 1_1:+55870314 | Msa0029990:CDS |
| CCAATGCCAAGGTGAAGTCT+TGG | 0.503482 | 1_1:-55873160 | None:intergenic |
| ATATTCATGAGTGGGCCACT+TGG | 0.511273 | 1_1:+55871657 | Msa0029990:CDS |
| TCTGTCCAATGTTATACTTA+GGG | 0.511965 | 1_1:+55870401 | Msa0029990:CDS |
| ATCAATATGTCATTGTCCAA+TGG | 0.513280 | 1_1:+55870267 | Msa0029990:exon |
| GAGTCAGATAAACTTTATCC+AGG | 0.515757 | 1_1:-55870332 | None:intergenic |
| GGGCCCAACACCGGGACGAT+AGG | 0.519433 | 1_1:-55872785 | None:intergenic |
| GAGACTCATCCAGATCAAAT+GGG | 0.522606 | 1_1:-55870305 | None:intergenic |
| GGAGATTATCTCCATTGCGT+TGG | 0.528009 | 1_1:-55872347 | None:intergenic |
| AGGCTAGCAGAAAGCAGAGC+TGG | 0.533062 | 1_1:+55871137 | Msa0029990:CDS |
| TCTCACAGTCTATAGCATCT+TGG | 0.533674 | 1_1:-55873313 | None:intergenic |
| GATAATCTCCTAATATATGA+TGG | 0.534586 | 1_1:+55872360 | Msa0029990:CDS |
| TATCACACTTGTCATCATCA+TGG | 0.537605 | 1_1:-55870359 | None:intergenic |
| TCCTACTTGTGGACGTGTGA+TGG | 0.538034 | 1_1:+55873628 | Msa0029990:CDS |
| TCAAACAAGATCCACAAGGT+TGG | 0.540906 | 1_1:+55873366 | Msa0029990:CDS |
| ATTCCAAAGTGAAAGCAGCT+AGG | 0.545603 | 1_1:-55871490 | None:intergenic |
| TCACCTAAAGGGCCCAACAC+CGG | 0.548774 | 1_1:-55872794 | None:intergenic |
| TGAGCCTATGTATCAAACTT+TGG | 0.551435 | 1_1:+55873433 | Msa0029990:CDS |
| TTCCAAAGTGAAAGCAGCTA+GGG | 0.561594 | 1_1:-55871489 | None:intergenic |
| TTGGGATAAGCCTATCGTCC+CGG | 0.562483 | 1_1:+55872775 | Msa0029990:CDS |
| GTTAACAAGTTGATCTGATG+AGG | 0.564705 | 1_1:-55871546 | None:intergenic |
| ATAATAGAACACTATCACTT+GGG | 0.564964 | 1_1:+55873224 | Msa0029990:CDS |
| GATTACTCTTCTGAGTTACC+TGG | 0.567472 | 1_1:+55872722 | Msa0029990:CDS |
| TGTGTGAGTTACTAGGTGAA+AGG | 0.570225 | 1_1:+55873092 | Msa0029990:intron |
| TATAATAGAACACTATCACT+TGG | 0.574606 | 1_1:+55873223 | Msa0029990:CDS |
| ACAGCTGAAAACCTATTCAT+GGG | 0.576028 | 1_1:+55871448 | Msa0029990:CDS |
| TGGGCCACTTGGTCTAGTGT+TGG | 0.577097 | 1_1:+55871668 | Msa0029990:CDS |
| TTTCATCGTCAACTTTGTTG+AGG | 0.579673 | 1_1:-55872535 | None:intergenic |
| CTTCTGGTCATTGTCAAAGA+CGG | 0.580916 | 1_1:-55872654 | None:intergenic |
| GATTGTCCTGCAATCTGTCA+TGG | 0.583670 | 1_1:-55872577 | None:intergenic |
| TGCAATGCATCAGACAAAGA+AGG | 0.586363 | 1_1:-55871710 | None:intergenic |
| TTTACCCTTTGATGCAAGGG+TGG | 0.587178 | 1_1:+55873872 | Msa0029990:three_prime_UTR |
| CAAGAAGTGAATCTGAGAGA+GGG | 0.590834 | 1_1:+55873709 | Msa0029990:exon |
| GTATAACATTGGACAGAATG+TGG | 0.592797 | 1_1:-55870395 | None:intergenic |
| GTTTACCCTAAGTATAACAT+TGG | 0.592906 | 1_1:-55870406 | None:intergenic |
| GTTGCCAGTAGCAGCAACAA+TGG | 0.594515 | 1_1:-55871768 | None:intergenic |
| CTTGCATCAAAGGGTAAACA+AGG | 0.595102 | 1_1:-55873867 | None:intergenic |
| ATAGCGTTCGCCACGAGGCG+TGG | 0.598525 | 1_1:-55871396 | None:intergenic |
| AATAATGAATGATGATGCAA+TGG | 0.598632 | 1_1:+55872817 | Msa0029990:CDS |
| TGCTTCTGCATATTCATGAG+TGG | 0.600233 | 1_1:+55871648 | Msa0029990:CDS |
| CAAATAGGTGACACACTTGG+TGG | 0.600326 | 1_1:+55872151 | Msa0029990:CDS |
| TCATGCCCAAATCCTACTTG+TGG | 0.601063 | 1_1:+55873617 | Msa0029990:CDS |
| AAGCTTCTGATCCAACGCAA+TGG | 0.610030 | 1_1:+55872336 | Msa0029990:CDS |
| GTGAGAATAACCCAACCTTG+TGG | 0.613884 | 1_1:-55873377 | None:intergenic |
| GCTTCTGCATATTCATGAGT+GGG | 0.617235 | 1_1:+55871649 | Msa0029990:CDS |
| TCTCTTATGAGTCCAATGCC+AGG | 0.617372 | 1_1:-55872740 | None:intergenic |
| GGTTGGGTTATTCTCACCAA+AGG | 0.619142 | 1_1:+55873383 | Msa0029990:CDS |
| GATGATGCTGCTCCACAGAA+TGG | 0.625297 | 1_1:+55873686 | Msa0029990:CDS |
| GCAAGAAGTGAATCTGAGAG+AGG | 0.633849 | 1_1:+55873708 | Msa0029990:exon |
| TCACAAATAGGTGACACACT+TGG | 0.636561 | 1_1:+55872148 | Msa0029990:CDS |
| TGCACATAGCGTTCGCCACG+AGG | 0.640747 | 1_1:-55871401 | None:intergenic |
| TCCATCACACGTCCACAAGT+AGG | 0.659029 | 1_1:-55873629 | None:intergenic |
| AGATACATATTCATCTATGG+AGG | 0.660945 | 1_1:+55873119 | Msa0029990:CDS |
| TCTGTGGAGCAGCATCATCA+CGG | 0.661090 | 1_1:-55873682 | None:intergenic |
| ATAACCAACACTAGACCAAG+TGG | 0.664243 | 1_1:-55871672 | None:intergenic |
| ATGGATCCAAGACTTCACCT+TGG | 0.666513 | 1_1:+55873154 | Msa0029990:CDS |
| TCAACATTGATCATTTCACA+TGG | 0.671206 | 1_1:-55873560 | None:intergenic |
| CAGATGATAACCACGCCTCG+TGG | 0.673775 | 1_1:+55871386 | Msa0029990:intron |
| TACTTGTGGACGTGTGATGG+AGG | 0.687419 | 1_1:+55873631 | Msa0029990:CDS |
| ACTCCACCAAATCTGTGACA+GGG | 0.697458 | 1_1:-55871613 | None:intergenic |
| CACACTTGTCATCATCATGG+AGG | 0.700312 | 1_1:-55870356 | None:intergenic |
| GCATCAAAGGGTAAACAAGG+TGG | 0.700502 | 1_1:-55873864 | None:intergenic |
| ATGTGCATCAAACAACAATG+TGG | 0.704575 | 1_1:+55871417 | Msa0029990:CDS |
| TCTGGTCATTGTCAAAGACG+GGG | 0.714834 | 1_1:-55872652 | None:intergenic |
| TGTCTCAAACAAGATCCACA+AGG | 0.723177 | 1_1:+55873362 | Msa0029990:CDS |
| TTATCCAATAAACAGCAACA+GGG | 0.754754 | 1_1:-55871739 | None:intergenic |
| GTGGAGCAGCATCATCACGG+TGG | 0.758327 | 1_1:-55873679 | None:intergenic |
| ATGAGGTTGAAGTCTCAGTG+AGG | 0.764223 | 1_1:-55871529 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAATGTTTCAAAAAT+GGG | + | chr1_1:55871282-55871301 | Msa0029990:intron | 10.0% |
| !! | TTATCAGTAAATAAGTAAAT+TGG | - | chr1_1:55870229-55870248 | None:intergenic | 15.0% |
| !! | ATATTGATAAATTCAACTTT+AGG | - | chr1_1:55870255-55870274 | None:intergenic | 15.0% |
| !! | AATAAAAAATGAACATAAGA+AGG | - | chr1_1:55870435-55870454 | None:intergenic | 15.0% |
| !!! | CAAATATAAGTTAAATTTTG+AGG | - | chr1_1:55870916-55870935 | None:intergenic | 15.0% |
| !! | TCCAAAAAAAAAAAAATATC+CGG | - | chr1_1:55871076-55871095 | None:intergenic | 15.0% |
| !!! | CTTTTATAATGTTTCAAAAA+TGG | + | chr1_1:55871281-55871300 | Msa0029990:intron | 15.0% |
| !!! | TTTTTTTTTTTTCTTGTTTC+AGG | + | chr1_1:55872047-55872066 | Msa0029990:intron | 15.0% |
| !!! | TTTTTTTTTTTCTTGTTTCA+GGG | + | chr1_1:55872048-55872067 | Msa0029990:intron | 15.0% |
| !!! | ATTTTTTTTGTATACATGTT+AGG | + | chr1_1:55872176-55872195 | Msa0029990:intron | 15.0% |
| !!! | AAGTTATTTTCAATCATTTT+TGG | + | chr1_1:55872204-55872223 | Msa0029990:intron | 15.0% |
| !! | AAGAAATCTATAATATCTTT+AGG | - | chr1_1:55872315-55872334 | None:intergenic | 15.0% |
| !! | TTAAGTTTATTATAAGATCT+AGG | + | chr1_1:55873000-55873019 | Msa0029990:intron | 15.0% |
| !!! | AATGTTGATAATAATATCAA+TGG | + | chr1_1:55873575-55873594 | Msa0029990:CDS | 15.0% |
| !! | CTATATAGCTTATATAATTT+GGG | + | chr1_1:55873755-55873774 | Msa0029990:three_prime_UTR | 15.0% |
| !!! | TATAACATTTTTCTATGTAG+TGG | - | chr1_1:55870752-55870771 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAAATATCCGG+CGG | - | chr1_1:55871073-55871092 | None:intergenic | 20.0% |
| !! | TGTCTTACATTTATAACTTA+AGG | - | chr1_1:55871844-55871863 | None:intergenic | 20.0% |
| !! | AGAACGAAAAATAAACTTAA+CGG | - | chr1_1:55871874-55871893 | None:intergenic | 20.0% |
| !! | AAACTAATCAAATCACAAAT+AGG | + | chr1_1:55872136-55872155 | Msa0029990:CDS | 20.0% |
| !!! | ATCTATAATATCTTTAGGAT+TGG | - | chr1_1:55872310-55872329 | None:intergenic | 20.0% |
| !!! | TATTATAAGATCTAGGTTTT+AGG | + | chr1_1:55873007-55873026 | Msa0029990:intron | 20.0% |
| !! | GCTATATAGCTTATATAATT+TGG | + | chr1_1:55873754-55873773 | Msa0029990:three_prime_UTR | 20.0% |
| ! | TAATGATTTCCTATAAAGCA+CGG | + | chr1_1:55870486-55870505 | Msa0029990:intron | 25.0% |
| !!! | TTACTTTTGTGGATTAAAGT+TGG | - | chr1_1:55870834-55870853 | None:intergenic | 25.0% |
| !!! | ATCGTAAACTTTTACTTTTG+TGG | - | chr1_1:55870845-55870864 | None:intergenic | 25.0% |
| ! | TCTTAGACATTATGACAATA+AGG | - | chr1_1:55870868-55870887 | None:intergenic | 25.0% |
| ! | TATAGGCTTGAAATAAACAA+GGG | - | chr1_1:55870943-55870962 | None:intergenic | 25.0% |
| ! | ATATAGGCTTGAAATAAACA+AGG | - | chr1_1:55870944-55870963 | None:intergenic | 25.0% |
| ! | GAGTCAAAGATAACATATAT+AGG | - | chr1_1:55870960-55870979 | None:intergenic | 25.0% |
| ! | ACAAGGGAAAACAAATATAA+GGG | - | chr1_1:55870927-55870946 | None:intergenic | 25.0% |
| ! | AACAAGGGAAAACAAATATA+AGG | - | chr1_1:55870928-55870947 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAAATATCCGGC+GGG | - | chr1_1:55871072-55871091 | None:intergenic | 25.0% |
| !!! | GCCGGATATTTTTTTTTTTT+TGG | + | chr1_1:55871072-55871091 | Msa0029990:intron | 25.0% |
| !! | TGGAGAACTAACATTTTTAT+TGG | + | chr1_1:55871092-55871111 | Msa0029990:intron | 25.0% |
| ! | TTATGCCATAATAATTAACC+TGG | - | chr1_1:55871202-55871221 | None:intergenic | 25.0% |
| !!! | TCTGTTTTGAATTTGATTCA+GGG | - | chr1_1:55871582-55871601 | None:intergenic | 25.0% |
| !!! | TTCTGTTTTGAATTTGATTC+AGG | - | chr1_1:55871583-55871602 | None:intergenic | 25.0% |
| ! | TATAACTTAAGGAACCAAAA+TGG | - | chr1_1:55871833-55871852 | None:intergenic | 25.0% |
| !!! | TTTTGTTGATTCTAAGTTGA+AGG | + | chr1_1:55872105-55872124 | Msa0029990:CDS | 25.0% |
| ! | GAATCTGCAACAAATATATA+TGG | - | chr1_1:55872252-55872271 | None:intergenic | 25.0% |
| ! | GATAATCTCCTAATATATGA+TGG | + | chr1_1:55872360-55872379 | Msa0029990:CDS | 25.0% |
| ! | ATAACAATAAACAAAAGTCG+AGG | - | chr1_1:55872418-55872437 | None:intergenic | 25.0% |
| !!! | TTTGTTTTCATGTATCAAAC+AGG | + | chr1_1:55872466-55872485 | Msa0029990:intron | 25.0% |
| !!! | CTCTTTTTTGTAACCTTTTA+TGG | - | chr1_1:55872612-55872631 | None:intergenic | 25.0% |
| ! | CATAAAAGGTTACAAAAAAG+AGG | + | chr1_1:55872610-55872629 | Msa0029990:CDS | 25.0% |
| ! | ATTCTTCAAAGAATCAAATC+TGG | - | chr1_1:55872681-55872700 | None:intergenic | 25.0% |
| ! | CATTCATTATTTCACCTAAA+GGG | - | chr1_1:55872808-55872827 | None:intergenic | 25.0% |
| ! | TCATTCATTATTTCACCTAA+AGG | - | chr1_1:55872809-55872828 | None:intergenic | 25.0% |
| !! | AATAATGAATGATGATGCAA+TGG | + | chr1_1:55872817-55872836 | Msa0029990:CDS | 25.0% |
| !!! | AATGGACTTGATTTTTCAAT+GGG | + | chr1_1:55872835-55872854 | Msa0029990:CDS | 25.0% |
| ! | GTTATGATCTTACTCAAAAA+TGG | + | chr1_1:55872891-55872910 | Msa0029990:CDS | 25.0% |
| ! | TATAATAGAACACTATCACT+TGG | + | chr1_1:55873223-55873242 | Msa0029990:CDS | 25.0% |
| ! | ATAATAGAACACTATCACTT+GGG | + | chr1_1:55873224-55873243 | Msa0029990:CDS | 25.0% |
| ATCAATATGTCATTGTCCAA+TGG | + | chr1_1:55870267-55870286 | Msa0029990:exon | 30.0% | |
| TTCTGTCCAATGTTATACTT+AGG | + | chr1_1:55870400-55870419 | Msa0029990:CDS | 30.0% | |
| TCTGTCCAATGTTATACTTA+GGG | + | chr1_1:55870401-55870420 | Msa0029990:CDS | 30.0% | |
| GTTTACCCTAAGTATAACAT+TGG | - | chr1_1:55870409-55870428 | None:intergenic | 30.0% | |
| TATGAAACACAGACAATCTT+TGG | - | chr1_1:55870634-55870653 | None:intergenic | 30.0% | |
| ATATCAGTACATTGAGAAAG+TGG | - | chr1_1:55870699-55870718 | None:intergenic | 30.0% | |
| ! | CGTAGGTTTGAAATAAACAA+GGG | - | chr1_1:55871037-55871056 | None:intergenic | 30.0% |
| TCTTGCCAGGTTAATTATTA+TGG | + | chr1_1:55871194-55871213 | Msa0029990:intron | 30.0% | |
| TTATCCAATAAACAGCAACA+GGG | - | chr1_1:55871742-55871761 | None:intergenic | 30.0% | |
| ATTATCCAATAAACAGCAAC+AGG | - | chr1_1:55871743-55871762 | None:intergenic | 30.0% | |
| ! | ATCTTCTTTTCGTTCCATTT+TGG | + | chr1_1:55871816-55871835 | Msa0029990:intron | 30.0% |
| ! | AAGAGGATTTCAAGATTTTG+TGG | + | chr1_1:55872627-55872646 | Msa0029990:CDS | 30.0% |
| ! | TAAGATCAGATTTTATGCAG+TGG | + | chr1_1:55872700-55872719 | Msa0029990:CDS | 30.0% |
| !!! | TAAGAGAGCATTTGAACTTT+TGG | + | chr1_1:55872756-55872775 | Msa0029990:CDS | 30.0% |
| !!! | AAGAGAGCATTTGAACTTTT+GGG | + | chr1_1:55872757-55872776 | Msa0029990:CDS | 30.0% |
| !! | CAATGGACTTGATTTTTCAA+TGG | + | chr1_1:55872834-55872853 | Msa0029990:CDS | 30.0% |
| !! | ATGGACTTGATTTTTCAATG+GGG | + | chr1_1:55872836-55872855 | Msa0029990:CDS | 30.0% |
| ! | AACCATCTTGTTTCCTAAAA+GGG | - | chr1_1:55872874-55872893 | None:intergenic | 30.0% |
| ! | TAACCATCTTGTTTCCTAAA+AGG | - | chr1_1:55872875-55872894 | None:intergenic | 30.0% |
| ATCTTACTCAAAAATGGAAG+TGG | + | chr1_1:55872897-55872916 | Msa0029990:CDS | 30.0% | |
| ! | TCAAAAATGGAAGTGGTTTT+GGG | + | chr1_1:55872904-55872923 | Msa0029990:CDS | 30.0% |
| GACAGATACATATTCATCTA+TGG | + | chr1_1:55873116-55873135 | Msa0029990:CDS | 30.0% | |
| AGATACATATTCATCTATGG+AGG | + | chr1_1:55873119-55873138 | Msa0029990:CDS | 30.0% | |
| ! | AAAGGCATGAAACTATCTTA+AGG | + | chr1_1:55873192-55873211 | Msa0029990:CDS | 30.0% |
| AAGGCATGAAACTATCTTAA+GGG | + | chr1_1:55873193-55873212 | Msa0029990:CDS | 30.0% | |
| TCTATTTCAATCCAAAAACG+AGG | - | chr1_1:55873272-55873291 | None:intergenic | 30.0% | |
| ! | GCTACAATGTTAAGCTTTTA+GGG | + | chr1_1:55873405-55873424 | Msa0029990:CDS | 30.0% |
| !! | CAAAGAGTATTATGAGACTA+AGG | + | chr1_1:55873514-55873533 | Msa0029990:CDS | 30.0% |
| TCAACATTGATCATTTCACA+TGG | - | chr1_1:55873563-55873582 | None:intergenic | 30.0% | |
| CAAGGGTGGAAAATAAATTA+TGG | + | chr1_1:55873886-55873905 | Msa0029990:three_prime_UTR | 30.0% | |
| GAGTCAGATAAACTTTATCC+AGG | - | chr1_1:55870335-55870354 | None:intergenic | 35.0% | |
| TATCACACTTGTCATCATCA+TGG | - | chr1_1:55870362-55870381 | None:intergenic | 35.0% | |
| GTATAACATTGGACAGAATG+TGG | - | chr1_1:55870398-55870417 | None:intergenic | 35.0% | |
| TGTAATCATATGTGTCGTGT+CGG | + | chr1_1:55870569-55870588 | Msa0029990:intron | 35.0% | |
| ACACAGACAATCTTTGGATT+AGG | - | chr1_1:55870628-55870647 | None:intergenic | 35.0% | |
| TAGTAGACCACCTTAAACTT+TGG | + | chr1_1:55870802-55870821 | Msa0029990:intron | 35.0% | |
| ! | GCGTAGGTTTGAAATAAACA+AGG | - | chr1_1:55871038-55871057 | None:intergenic | 35.0% |
| TACCAAATGAATCACAGACA+AGG | + | chr1_1:55871117-55871136 | Msa0029990:intron | 35.0% | |
| !! | ATCTGTTGATAATGTCAGAG+AGG | - | chr1_1:55871371-55871390 | None:intergenic | 35.0% |
| ATGTGCATCAAACAACAATG+TGG | + | chr1_1:55871417-55871436 | Msa0029990:CDS | 35.0% | |
| AACAGCTGAAAACCTATTCA+TGG | + | chr1_1:55871447-55871466 | Msa0029990:CDS | 35.0% | |
| ACAGCTGAAAACCTATTCAT+GGG | + | chr1_1:55871448-55871467 | Msa0029990:CDS | 35.0% | |
| !! | GTTAACAAGTTGATCTGATG+AGG | - | chr1_1:55871549-55871568 | None:intergenic | 35.0% |
| !! | AGATTTGGTGGAGTTGATAA+TGG | + | chr1_1:55871622-55871641 | Msa0029990:CDS | 35.0% |
| !! | TTATCCCTGTTGCTGTTTAT+TGG | + | chr1_1:55871735-55871754 | Msa0029990:CDS | 35.0% |
| !!! | AGTGCTAACCGTTTTGTTTT+TGG | - | chr1_1:55872391-55872410 | None:intergenic | 35.0% |
| TTTCATCGTCAACTTTGTTG+AGG | - | chr1_1:55872538-55872557 | None:intergenic | 35.0% | |
| AATCCACAAGAAGCCATAAA+AGG | + | chr1_1:55872596-55872615 | Msa0029990:CDS | 35.0% | |
| ! | TAACCTTTTATGGCTTCTTG+TGG | - | chr1_1:55872602-55872621 | None:intergenic | 35.0% |
| ! | AAGAATCAAATCTGGTCTTC+TGG | - | chr1_1:55872673-55872692 | None:intergenic | 35.0% |
| !! | TGGACTTGATTTTTCAATGG+GGG | + | chr1_1:55872837-55872856 | Msa0029990:CDS | 35.0% |
| ! | CTCAAAAATGGAAGTGGTTT+TGG | + | chr1_1:55872903-55872922 | Msa0029990:CDS | 35.0% |
| GTAACAAAGAGAGTGAATCT+TGG | + | chr1_1:55872929-55872948 | Msa0029990:CDS | 35.0% | |
| ! | TGTTTTCTGTGTGAGTTACT+AGG | + | chr1_1:55873085-55873104 | Msa0029990:intron | 35.0% |
| !!! | TTTTGTTTTCTCCAATGCCA+AGG | - | chr1_1:55873174-55873193 | None:intergenic | 35.0% |
| ! | TGGCATTGGAGAAAACAAAA+AGG | + | chr1_1:55873174-55873193 | Msa0029990:CDS | 35.0% |
| AAAAACGAGGAACGATCTTA+GGG | - | chr1_1:55873259-55873278 | None:intergenic | 35.0% | |
| AAGCTTAACATTGTAGCCTT+TGG | - | chr1_1:55873402-55873421 | None:intergenic | 35.0% | |
| ! | GGCTACAATGTTAAGCTTTT+AGG | + | chr1_1:55873404-55873423 | Msa0029990:CDS | 35.0% |
| !!! | AATGTTAAGCTTTTAGGGCA+TGG | + | chr1_1:55873410-55873429 | Msa0029990:CDS | 35.0% |
| TGAGCCTATGTATCAAACTT+TGG | + | chr1_1:55873433-55873452 | Msa0029990:CDS | 35.0% | |
| TCAGCCAAAGTTTGATACAT+AGG | - | chr1_1:55873440-55873459 | None:intergenic | 35.0% | |
| !! | CTTTGGCTGATTTTGATGTA+TGG | + | chr1_1:55873450-55873469 | Msa0029990:CDS | 35.0% |
| ! | GATAGAGTGCTACAAAAAGA+AGG | + | chr1_1:55873476-55873495 | Msa0029990:CDS | 35.0% |
| TTGTTTACCCTTTGATGCAA+GGG | + | chr1_1:55873869-55873888 | Msa0029990:three_prime_UTR | 35.0% | |
| ! | TCATCCAGATCAAATGGGTT+TGG | - | chr1_1:55870303-55870322 | None:intergenic | 40.0% |
| GAGACTCATCCAGATCAAAT+GGG | - | chr1_1:55870308-55870327 | None:intergenic | 40.0% | |
| TGAGACTCATCCAGATCAAA+TGG | - | chr1_1:55870309-55870328 | None:intergenic | 40.0% | |
| CATTGGACAGAATGTGGAAA+AGG | - | chr1_1:55870392-55870411 | None:intergenic | 40.0% | |
| GTCAGTATCCGTATCATATC+TGG | - | chr1_1:55870515-55870534 | None:intergenic | 40.0% | |
| ! | TCTTTGGATTAGGTGTGTCT+TGG | - | chr1_1:55870618-55870637 | None:intergenic | 40.0% |
| TTGGTTAGCGCCAAAGTTTA+AGG | - | chr1_1:55870815-55870834 | None:intergenic | 40.0% | |
| ! | AGCCTTGTCTGTGATTCATT+TGG | - | chr1_1:55871122-55871141 | None:intergenic | 40.0% |
| AGCTTCATTGTGCGAAATTC+TGG | - | chr1_1:55871170-55871189 | None:intergenic | 40.0% | |
| ! | AATGAAGCTGATTTCTTGCC+AGG | + | chr1_1:55871181-55871200 | Msa0029990:CDS | 40.0% |
| ! | TGCTTTTGCATCCCATGAAT+AGG | - | chr1_1:55871462-55871481 | None:intergenic | 40.0% |
| TTCCAAAGTGAAAGCAGCTA+GGG | - | chr1_1:55871492-55871511 | None:intergenic | 40.0% | |
| ATTCCAAAGTGAAAGCAGCT+AGG | - | chr1_1:55871493-55871512 | None:intergenic | 40.0% | |
| !! | GCTGCTTTCACTTTGGAATA+TGG | + | chr1_1:55871494-55871513 | Msa0029990:CDS | 40.0% |
| TGCTTCTGCATATTCATGAG+TGG | + | chr1_1:55871648-55871667 | Msa0029990:CDS | 40.0% | |
| GCTTCTGCATATTCATGAGT+GGG | + | chr1_1:55871649-55871668 | Msa0029990:CDS | 40.0% | |
| ATAACCAACACTAGACCAAG+TGG | - | chr1_1:55871675-55871694 | None:intergenic | 40.0% | |
| TGCAATGCATCAGACAAAGA+AGG | - | chr1_1:55871713-55871732 | None:intergenic | 40.0% | |
| TCACAAATAGGTGACACACT+TGG | + | chr1_1:55872148-55872167 | Msa0029990:CDS | 40.0% | |
| !! | TGGTGGTGCCATCATATATT+AGG | - | chr1_1:55872371-55872390 | None:intergenic | 40.0% |
| TGGCACCACCAAAAACAAAA+CGG | + | chr1_1:55872380-55872399 | Msa0029990:CDS | 40.0% | |
| !!! | GCTAACCGTTTTGTTTTTGG+TGG | - | chr1_1:55872388-55872407 | None:intergenic | 40.0% |
| TTCTGGTCATTGTCAAAGAC+GGG | - | chr1_1:55872656-55872675 | None:intergenic | 40.0% | |
| CTTCTGGTCATTGTCAAAGA+CGG | - | chr1_1:55872657-55872676 | None:intergenic | 40.0% | |
| GATTACTCTTCTGAGTTACC+TGG | + | chr1_1:55872722-55872741 | Msa0029990:CDS | 40.0% | |
| !! | CTCCCTTTTAGGAAACAAGA+TGG | + | chr1_1:55872869-55872888 | Msa0029990:CDS | 40.0% |
| GAGAGTGAATCTTGGAATAC+AGG | + | chr1_1:55872937-55872956 | Msa0029990:CDS | 40.0% | |
| TGTGTGAGTTACTAGGTGAA+AGG | + | chr1_1:55873092-55873111 | Msa0029990:intron | 40.0% | |
| ATGGAGGCAGAGACAAAAAA+TGG | + | chr1_1:55873135-55873154 | Msa0029990:CDS | 40.0% | |
| CAAAAACGAGGAACGATCTT+AGG | - | chr1_1:55873260-55873279 | None:intergenic | 40.0% | |
| ! | CTAAGATCGTTCCTCGTTTT+TGG | + | chr1_1:55873258-55873277 | Msa0029990:CDS | 40.0% |
| TCTCACAGTCTATAGCATCT+TGG | - | chr1_1:55873316-55873335 | None:intergenic | 40.0% | |
| TGTCTCAAACAAGATCCACA+AGG | + | chr1_1:55873362-55873381 | Msa0029990:CDS | 40.0% | |
| TCAAACAAGATCCACAAGGT+TGG | + | chr1_1:55873366-55873385 | Msa0029990:CDS | 40.0% | |
| CAAACAAGATCCACAAGGTT+GGG | + | chr1_1:55873367-55873386 | Msa0029990:CDS | 40.0% | |
| ATTCACTTCTTGCCATTCTG+TGG | - | chr1_1:55873701-55873720 | None:intergenic | 40.0% | |
| CAAGAAGTGAATCTGAGAGA+GGG | + | chr1_1:55873709-55873728 | Msa0029990:exon | 40.0% | |
| CTTGCATCAAAGGGTAAACA+AGG | - | chr1_1:55873870-55873889 | None:intergenic | 40.0% | |
| CTTGTTTACCCTTTGATGCA+AGG | + | chr1_1:55873868-55873887 | Msa0029990:three_prime_UTR | 40.0% | |
| ! | TTTTCCACCCTTGCATCAAA+GGG | - | chr1_1:55873879-55873898 | None:intergenic | 40.0% |
| ! | ATTTTCCACCCTTGCATCAA+AGG | - | chr1_1:55873880-55873899 | None:intergenic | 40.0% |
| GTTTGGCAGCTTAGTTCCAT+TGG | - | chr1_1:55870286-55870305 | None:intergenic | 45.0% | |
| TCTGGATGAGTCTCAAATCC+TGG | + | chr1_1:55870314-55870333 | Msa0029990:CDS | 45.0% | |
| CACACTTGTCATCATCATGG+AGG | - | chr1_1:55870359-55870378 | None:intergenic | 45.0% | |
| ! | CATATGTGTCGTGTCGGTAT+CGG | + | chr1_1:55870575-55870594 | Msa0029990:intron | 45.0% |
| GTTAGCGCCAAAGTTTAAGG+TGG | - | chr1_1:55870812-55870831 | None:intergenic | 45.0% | |
| ATGAGGTTGAAGTCTCAGTG+AGG | - | chr1_1:55871532-55871551 | None:intergenic | 45.0% | |
| ACTCCACCAAATCTGTGACA+GGG | - | chr1_1:55871616-55871635 | None:intergenic | 45.0% | |
| AACTCCACCAAATCTGTGAC+AGG | - | chr1_1:55871617-55871636 | None:intergenic | 45.0% | |
| ATATTCATGAGTGGGCCACT+TGG | + | chr1_1:55871657-55871676 | Msa0029990:CDS | 45.0% | |
| CAAATAGGTGACACACTTGG+TGG | + | chr1_1:55872151-55872170 | Msa0029990:CDS | 45.0% | |
| AAGCTTCTGATCCAACGCAA+TGG | + | chr1_1:55872336-55872355 | Msa0029990:CDS | 45.0% | |
| GGAGATTATCTCCATTGCGT+TGG | - | chr1_1:55872350-55872369 | None:intergenic | 45.0% | |
| CTCTATCCATGACAGATTGC+AGG | + | chr1_1:55872571-55872590 | Msa0029990:CDS | 45.0% | |
| GATTGTCCTGCAATCTGTCA+TGG | - | chr1_1:55872580-55872599 | None:intergenic | 45.0% | |
| TCTGGTCATTGTCAAAGACG+GGG | - | chr1_1:55872655-55872674 | None:intergenic | 45.0% | |
| TCTTCTGAGTTACCTGGCAT+TGG | + | chr1_1:55872728-55872747 | Msa0029990:CDS | 45.0% | |
| TCTCTTATGAGTCCAATGCC+AGG | - | chr1_1:55872743-55872762 | None:intergenic | 45.0% | |
| ! | GGATAGATGCACTCCCTTTT+AGG | + | chr1_1:55872858-55872877 | Msa0029990:CDS | 45.0% |
| ATGGATCCAAGACTTCACCT+TGG | + | chr1_1:55873154-55873173 | Msa0029990:CDS | 45.0% | |
| GTGAGAATAACCCAACCTTG+TGG | - | chr1_1:55873380-55873399 | None:intergenic | 45.0% | |
| GGTTGGGTTATTCTCACCAA+AGG | + | chr1_1:55873383-55873402 | Msa0029990:CDS | 45.0% | |
| TCATGCCCAAATCCTACTTG+TGG | + | chr1_1:55873617-55873636 | Msa0029990:CDS | 45.0% | |
| CACGTCCACAAGTAGGATTT+GGG | - | chr1_1:55873625-55873644 | None:intergenic | 45.0% | |
| ACACGTCCACAAGTAGGATT+TGG | - | chr1_1:55873626-55873645 | None:intergenic | 45.0% | |
| GCAAGAAGTGAATCTGAGAG+AGG | + | chr1_1:55873708-55873727 | Msa0029990:exon | 45.0% | |
| GCATCAAAGGGTAAACAAGG+TGG | - | chr1_1:55873867-55873886 | None:intergenic | 45.0% | |
| TTTACCCTTTGATGCAAGGG+TGG | + | chr1_1:55873872-55873891 | Msa0029990:three_prime_UTR | 45.0% | |
| GCTGCCAAACCCATTTGATC+TGG | + | chr1_1:55870296-55870315 | Msa0029990:CDS | 50.0% | |
| ATCTGGCGTCCGTGCTTTAT+AGG | - | chr1_1:55870498-55870517 | None:intergenic | 50.0% | |
| CACGGACGCCAGATATGATA+CGG | + | chr1_1:55870504-55870523 | Msa0029990:intron | 50.0% | |
| !! | GTGTCTTGGTGTCGACACAT+CGG | - | chr1_1:55870604-55870623 | None:intergenic | 50.0% |
| TGACTCTAGCTACTGTGCGT+TGG | + | chr1_1:55870974-55870993 | Msa0029990:intron | 50.0% | |
| ! | AGCCCTAGCTGCTTTCACTT+TGG | + | chr1_1:55871487-55871506 | Msa0029990:CDS | 50.0% |
| CACTGTCCCTGTCACAGATT+TGG | + | chr1_1:55871607-55871626 | Msa0029990:CDS | 50.0% | |
| TGTCCCTGTCACAGATTTGG+TGG | + | chr1_1:55871610-55871629 | Msa0029990:CDS | 50.0% | |
| GCTTCCATTGTTGCTGCTAC+TGG | + | chr1_1:55871764-55871783 | Msa0029990:CDS | 50.0% | |
| GTTGCCAGTAGCAGCAACAA+TGG | - | chr1_1:55871771-55871790 | None:intergenic | 50.0% | |
| GCTGCTACTGGCAACATCAT+TGG | + | chr1_1:55871776-55871795 | Msa0029990:CDS | 50.0% | |
| TTGGGATAAGCCTATCGTCC+CGG | + | chr1_1:55872775-55872794 | Msa0029990:CDS | 50.0% | |
| CCAATGCCAAGGTGAAGTCT+TGG | - | chr1_1:55873163-55873182 | None:intergenic | 50.0% | |
| CCAAGACTTCACCTTGGCAT+TGG | + | chr1_1:55873160-55873179 | Msa0029990:CDS | 50.0% | |
| TCCTACTTGTGGACGTGTGA+TGG | + | chr1_1:55873628-55873647 | Msa0029990:CDS | 50.0% | |
| TCCATCACACGTCCACAAGT+AGG | - | chr1_1:55873632-55873651 | None:intergenic | 50.0% | |
| TACTTGTGGACGTGTGATGG+AGG | + | chr1_1:55873631-55873650 | Msa0029990:CDS | 50.0% | |
| TCTGTGGAGCAGCATCATCA+CGG | - | chr1_1:55873685-55873704 | None:intergenic | 50.0% | |
| GATGATGCTGCTCCACAGAA+TGG | + | chr1_1:55873686-55873705 | Msa0029990:CDS | 50.0% | |
| GTGAATCTGAGAGAGGGAAG+AGG | + | chr1_1:55873715-55873734 | Msa0029990:exon | 50.0% | |
| TATCCGGCGGGAGTAACTAG+AGG | - | chr1_1:55871060-55871079 | None:intergenic | 55.0% | |
| AGGCTAGCAGAAAGCAGAGC+TGG | + | chr1_1:55871137-55871156 | Msa0029990:CDS | 55.0% | |
| CAGATGATAACCACGCCTCG+TGG | + | chr1_1:55871386-55871405 | Msa0029990:intron | 55.0% | |
| TGGGCCACTTGGTCTAGTGT+TGG | + | chr1_1:55871668-55871687 | Msa0029990:CDS | 55.0% | |
| TAAGCCTATCGTCCCGGTGT+TGG | + | chr1_1:55872781-55872800 | Msa0029990:CDS | 55.0% | |
| AAGCCTATCGTCCCGGTGTT+GGG | + | chr1_1:55872782-55872801 | Msa0029990:CDS | 55.0% | |
| TCACCTAAAGGGCCCAACAC+CGG | - | chr1_1:55872797-55872816 | None:intergenic | 55.0% | |
| ! | GCGGGAGTAACTAGAGGCGT+AGG | - | chr1_1:55871054-55871073 | None:intergenic | 60.0% |
| ACGCCTCTAGTTACTCCCGC+CGG | + | chr1_1:55871054-55871073 | Msa0029990:intron | 60.0% | |
| TGCACATAGCGTTCGCCACG+AGG | - | chr1_1:55871404-55871423 | None:intergenic | 60.0% | |
| CACCTAAAGGGCCCAACACC+GGG | - | chr1_1:55872796-55872815 | None:intergenic | 60.0% | |
| GTGGAGCAGCATCATCACGG+TGG | - | chr1_1:55873682-55873701 | None:intergenic | 60.0% | |
| ATAGCGTTCGCCACGAGGCG+TGG | - | chr1_1:55871399-55871418 | None:intergenic | 65.0% | |
| ! | GTCCCGGTGTTGGGCCCTTT+AGG | + | chr1_1:55872791-55872810 | Msa0029990:CDS | 65.0% |
| GGGCCCAACACCGGGACGAT+AGG | - | chr1_1:55872788-55872807 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 55870219 | 55873988 | 55870219 | ID=Msa0029990;Name=Msa0029990 |
| chr1_1 | mRNA | 55870219 | 55873988 | 55870219 | ID=Msa0029990-mRNA-1;Parent=Msa0029990;Name=Msa0029990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=54|0.83|0.85|1|1|1|7|270|651 |
| chr1_1 | exon | 55870219 | 55870422 | 55870219 | ID=Msa0029990-mRNA-1:exon:16637;Parent=Msa0029990-mRNA-1 |
| chr1_1 | exon | 55871134 | 55871202 | 55871134 | ID=Msa0029990-mRNA-1:exon:16638;Parent=Msa0029990-mRNA-1 |
| chr1_1 | exon | 55871389 | 55871804 | 55871389 | ID=Msa0029990-mRNA-1:exon:16639;Parent=Msa0029990-mRNA-1 |
| chr1_1 | exon | 55872069 | 55872172 | 55872069 | ID=Msa0029990-mRNA-1:exon:16640;Parent=Msa0029990-mRNA-1 |
| chr1_1 | exon | 55872268 | 55872401 | 55872268 | ID=Msa0029990-mRNA-1:exon:16641;Parent=Msa0029990-mRNA-1 |
| chr1_1 | exon | 55872488 | 55872958 | 55872488 | ID=Msa0029990-mRNA-1:exon:16642;Parent=Msa0029990-mRNA-1 |
| chr1_1 | exon | 55873107 | 55873988 | 55873107 | ID=Msa0029990-mRNA-1:exon:16643;Parent=Msa0029990-mRNA-1 |
| chr1_1 | five_prime_UTR | 55870219 | 55870272 | 55870219 | ID=Msa0029990-mRNA-1:five_prime_utr;Parent=Msa0029990-mRNA-1 |
| chr1_1 | CDS | 55870273 | 55870422 | 55870273 | ID=Msa0029990-mRNA-1:cds;Parent=Msa0029990-mRNA-1 |
| chr1_1 | CDS | 55871134 | 55871202 | 55871134 | ID=Msa0029990-mRNA-1:cds;Parent=Msa0029990-mRNA-1 |
| chr1_1 | CDS | 55871389 | 55871804 | 55871389 | ID=Msa0029990-mRNA-1:cds;Parent=Msa0029990-mRNA-1 |
| chr1_1 | CDS | 55872069 | 55872172 | 55872069 | ID=Msa0029990-mRNA-1:cds;Parent=Msa0029990-mRNA-1 |
| chr1_1 | CDS | 55872268 | 55872401 | 55872268 | ID=Msa0029990-mRNA-1:cds;Parent=Msa0029990-mRNA-1 |
| chr1_1 | CDS | 55872488 | 55872958 | 55872488 | ID=Msa0029990-mRNA-1:cds;Parent=Msa0029990-mRNA-1 |
| chr1_1 | CDS | 55873107 | 55873718 | 55873107 | ID=Msa0029990-mRNA-1:cds;Parent=Msa0029990-mRNA-1 |
| chr1_1 | three_prime_UTR | 55873719 | 55873988 | 55873719 | ID=Msa0029990-mRNA-1:three_prime_utr;Parent=Msa0029990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
