Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071840 | XP_003590781.1 | 93.558 | 652 | 34 | 4 | 1 | 650 | 1 | 646 | 0.0 | 1234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071840 | sp|Q9SS87|SEOB_ARATH | 26.308 | 707 | 422 | 25 | 16 | 640 | 39 | 728 | 1.95e-49 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071840 | A8C978 | 93.558 | 652 | 34 | 4 | 1 | 650 | 1 | 646 | 0.0 | 1234 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009780 | Msa0071840 | 0.800176 | 1.629169e-48 | -8.615850e-47 |
| Msa0015150 | Msa0071840 | 0.907413 | 5.208020e-81 | -8.615850e-47 |
| Msa0015570 | Msa0071840 | 0.801380 | 9.252632e-49 | -8.615850e-47 |
| Msa0029960 | Msa0071840 | 0.884470 | 1.865992e-71 | -8.615850e-47 |
| Msa0029970 | Msa0071840 | 0.800031 | 1.744131e-48 | -8.615850e-47 |
| Msa0029990 | Msa0071840 | 0.989279 | 1.908412e-177 | -8.615850e-47 |
| Msa0064120 | Msa0071840 | 0.885062 | 1.123482e-71 | -8.615850e-47 |
| Msa0071840 | Msa0071850 | 0.840397 | 8.913293e-58 | -8.615850e-47 |
| Msa0071840 | Msa0071860 | 0.825335 | 4.958574e-54 | -8.615850e-47 |
| Msa0071840 | Msa0072520 | 0.806738 | 7.109427e-50 | -8.615850e-47 |
| Msa0071840 | Msa0108880 | 0.886255 | 4.011124e-72 | -8.615850e-47 |
| Msa0071840 | Msa0125200 | 0.853020 | 3.149430e-61 | -8.615850e-47 |
| Msa0071840 | Msa0125210 | 0.836610 | 8.459235e-57 | -8.615850e-47 |
| Msa0071840 | Msa0125220 | 0.843671 | 1.214281e-58 | -8.615850e-47 |
| Msa0071840 | Msa0125590 | 0.812247 | 4.667508e-51 | -8.615850e-47 |
| Msa0071840 | Msa0132700 | 0.815352 | 9.659255e-52 | -8.615850e-47 |
| Msa0071840 | Msa0141640 | 0.800261 | 1.565901e-48 | -8.615850e-47 |
| Msa0071840 | Msa0146650 | 0.806223 | 9.129630e-50 | -8.615850e-47 |
| Msa0071840 | Msa0155180 | 0.909550 | 5.030440e-82 | -8.615850e-47 |
| Msa0071840 | Msa0156050 | 0.807357 | 5.257976e-50 | -8.615850e-47 |
| Msa0071840 | Msa0170070 | 0.821257 | 4.446094e-53 | -8.615850e-47 |
| Msa0071840 | Msa0177140 | 0.802648 | 5.078884e-49 | -8.615850e-47 |
| Msa0071840 | Msa0181880 | 0.812151 | 4.898074e-51 | -8.615850e-47 |
| Msa0071840 | Msa0359010 | 0.827148 | 1.836114e-54 | -8.615850e-47 |
| Msa0071840 | Msa0373170 | 0.803374 | 3.593767e-49 | -8.615850e-47 |
| Msa0071840 | Msa0382530 | 0.847223 | 1.324528e-59 | -8.615850e-47 |
| Msa0071840 | Msa0432320 | 0.836282 | 1.025295e-56 | -8.615850e-47 |
| Msa0071840 | Msa0433760 | 0.812014 | 5.245840e-51 | -8.615850e-47 |
| Msa0071840 | Msa0451170 | 0.834173 | 3.492612e-56 | -8.615850e-47 |
| Msa0071840 | Msa0460550 | 0.800182 | 1.624828e-48 | -8.615850e-47 |
| Msa0071840 | Msa0466520 | 0.809017 | 2.329642e-50 | -8.615850e-47 |
| Msa0071840 | Msa0467690 | 0.804726 | 1.881508e-49 | -8.615850e-47 |
| Msa0071840 | Msa0477630 | 0.805571 | 1.252138e-49 | -8.615850e-47 |
| Msa0071840 | Msa0498610 | 0.825617 | 4.250388e-54 | -8.615850e-47 |
| Msa0071840 | Msa0513080 | 0.800036 | 1.740258e-48 | -8.615850e-47 |
| Msa0071840 | Msa0514020 | 0.807595 | 4.682071e-50 | -8.615850e-47 |
| Msa0071840 | Msa0520260 | 0.802477 | 5.507593e-49 | -8.615850e-47 |
| Msa0071840 | Msa0520870 | 0.802462 | 5.546922e-49 | -8.615850e-47 |
| Msa0071840 | Msa0521680 | 0.822219 | 2.663054e-53 | -8.615850e-47 |
| Msa0071840 | Msa0525210 | 0.850378 | 1.765734e-60 | -8.615850e-47 |
| Msa0071840 | Msa0541740 | 0.818614 | 1.788125e-52 | -8.615850e-47 |
| Msa0071840 | Msa0564980 | 0.810737 | 9.933685e-51 | -8.615850e-47 |
| Msa0071840 | Msa0570010 | 0.827992 | 1.151394e-54 | -8.615850e-47 |
| Msa0071840 | Msa0580810 | 0.800120 | 1.672479e-48 | -8.615850e-47 |
| Msa0071840 | Msa0588920 | 0.811341 | 7.348915e-51 | -8.615850e-47 |
| Msa0071840 | Msa0612520 | 0.803911 | 2.781215e-49 | -8.615850e-47 |
| Msa0071840 | Msa0619710 | 0.810057 | 1.393006e-50 | -8.615850e-47 |
| Msa0071840 | Msa0621710 | 0.800397 | 1.469482e-48 | -8.615850e-47 |
| Msa0071840 | Msa0648760 | 0.802971 | 4.354438e-49 | -8.615850e-47 |
| Msa0071840 | Msa0657210 | 0.819229 | 1.296286e-52 | -8.615850e-47 |
| Msa0071840 | Msa0666700 | 0.807110 | 5.931026e-50 | -8.615850e-47 |
| Msa0071840 | Msa0695560 | 0.821558 | 3.787077e-53 | -8.615850e-47 |
| Msa0071840 | Msa0701250 | 0.817293 | 3.555516e-52 | -8.615850e-47 |
| Msa0071840 | Msa0706150 | 0.821527 | 3.851130e-53 | -8.615850e-47 |
| Msa0071840 | Msa0716480 | 0.800374 | 1.484775e-48 | -8.615850e-47 |
| Msa0071840 | Msa0738700 | 0.806283 | 8.867966e-50 | -8.615850e-47 |
| Msa0071840 | Msa0740090 | 0.845410 | 4.132257e-59 | -8.615850e-47 |
| Msa0071840 | Msa0740710 | 0.816153 | 6.405422e-52 | -8.615850e-47 |
| Msa0071840 | Msa0780910 | 0.812446 | 4.222991e-51 | -8.615850e-47 |
| Msa0071840 | Msa0782750 | 0.819380 | 1.197369e-52 | -8.615850e-47 |
| Msa0071840 | Msa0820380 | 0.825723 | 4.012979e-54 | -8.615850e-47 |
| Msa0071840 | Msa0821160 | 0.800273 | 1.556818e-48 | -8.615850e-47 |
| Msa0071840 | Msa0837460 | 0.804479 | 2.118390e-49 | -8.615850e-47 |
| Msa0071840 | Msa0900760 | 0.808651 | 2.788565e-50 | -8.615850e-47 |
| Msa0071840 | Msa0909760 | 0.803891 | 2.807042e-49 | -8.615850e-47 |
| Msa0071840 | Msa1014320 | 0.876241 | 1.633105e-68 | -8.615850e-47 |
| Msa0071840 | Msa1021780 | 0.801439 | 8.999252e-49 | -8.615850e-47 |
| Msa0071840 | Msa1055310 | 0.857319 | 1.769361e-62 | -8.615850e-47 |
| Msa0071840 | Msa1061900 | 0.813386 | 2.627527e-51 | -8.615850e-47 |
| Msa0071840 | Msa1078880 | 0.809145 | 2.186755e-50 | -8.615850e-47 |
| Msa0071840 | Msa1166190 | 0.800502 | 1.398548e-48 | -8.615850e-47 |
| Msa0071840 | Msa1169190 | 0.807763 | 4.311487e-50 | -8.615850e-47 |
| Msa0071840 | Msa1188170 | 0.812844 | 3.454890e-51 | -8.615850e-47 |
| Msa0071840 | Msa1209320 | 0.805139 | 1.541948e-49 | -8.615850e-47 |
| Msa0071840 | Msa1254540 | 0.814896 | 1.219475e-51 | -8.615850e-47 |
| Msa0071840 | Msa1262860 | 0.803037 | 4.220245e-49 | -8.615850e-47 |
| Msa0071840 | Msa1263780 | 0.809466 | 1.866101e-50 | -8.615850e-47 |
| Msa0071840 | Msa1267930 | 0.818141 | 2.288292e-52 | -8.615850e-47 |
| Msa0071840 | Msa1290380 | 0.809577 | 1.766871e-50 | -8.615850e-47 |
| Msa0071840 | Msa1290440 | 0.805553 | 1.262918e-49 | -8.615850e-47 |
| Msa0071840 | Msa1308850 | 0.803010 | 4.275569e-49 | -8.615850e-47 |
| Msa0071840 | Msa1356220 | 0.805952 | 1.041285e-49 | -8.615850e-47 |
| Msa0071840 | Msa1380120 | 0.803060 | 4.174157e-49 | -8.615850e-47 |
| Msa0071840 | Msa1381030 | 0.816130 | 6.479456e-52 | -8.615850e-47 |
| Msa0071840 | Msa1381470 | 0.822935 | 1.815078e-53 | -8.615850e-47 |
| Msa0071840 | Msa1383310 | 0.811325 | 7.406495e-51 | -8.615850e-47 |
| Msa0071840 | Msa1387500 | 0.813964 | 1.960285e-51 | -8.615850e-47 |
| Msa0071840 | Msa1406720 | 0.812599 | 3.909277e-51 | -8.615850e-47 |
| Msa0071840 | Msa1409410 | 0.805337 | 1.401782e-49 | -8.615850e-47 |
| Msa0071840 | Msa1429860 | 0.836367 | 9.757691e-57 | -8.615850e-47 |
| Msa0071840 | Msa1435630 | 0.849475 | 3.156907e-60 | -8.615850e-47 |
| Msa0071840 | Msa1440430 | 0.814894 | 1.221266e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071840 | MtrunA17_Chr1g0187001 | 93.558 | 652 | 34 | 4 | 1 | 650 | 1 | 646 | 0.0 | 1234 |
| Msa0071840 | MtrunA17_Chr1g0186981 | 59.084 | 655 | 250 | 10 | 2 | 648 | 24 | 668 | 0.0 | 782 |
| Msa0071840 | MtrunA17_Chr1g0186991 | 50.840 | 655 | 292 | 11 | 7 | 643 | 27 | 669 | 0.0 | 662 |
| Msa0071840 | MtrunA17_Chr1g0165791 | 47.120 | 677 | 305 | 16 | 2 | 640 | 16 | 677 | 0.0 | 578 |
| Msa0071840 | MtrunA17_Chr1g0186841 | 32.314 | 687 | 397 | 20 | 3 | 650 | 13 | 670 | 1.15e-101 | 324 |
| Msa0071840 | MtrunA17_Chr1g0186851 | 31.148 | 671 | 397 | 18 | 11 | 643 | 20 | 663 | 1.49e-99 | 318 |
| Msa0071840 | MtrunA17_Chr1g0186861 | 31.390 | 669 | 394 | 16 | 11 | 640 | 20 | 662 | 8.17e-94 | 303 |
| Msa0071840 | MtrunA17_Chr1g0187041 | 31.204 | 673 | 396 | 20 | 11 | 643 | 20 | 665 | 4.59e-93 | 301 |
| Msa0071840 | MtrunA17_Chr1g0186911 | 32.253 | 586 | 352 | 14 | 74 | 640 | 1 | 560 | 2.37e-83 | 273 |
| Msa0071840 | MtrunA17_Chr7g0226571 | 26.345 | 725 | 427 | 25 | 3 | 644 | 14 | 714 | 4.17e-52 | 191 |
| Msa0071840 | MtrunA17_Chr8g0381301 | 26.688 | 637 | 393 | 22 | 60 | 641 | 87 | 704 | 3.48e-47 | 177 |
| Msa0071840 | MtrunA17_Chr8g0364451 | 89.011 | 91 | 10 | 0 | 74 | 164 | 49 | 139 | 7.31e-46 | 160 |
| Msa0071840 | MtrunA17_Chr3g0116601 | 26.167 | 707 | 408 | 27 | 16 | 639 | 29 | 704 | 4.16e-43 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071840 | AT3G01680.1 | 26.308 | 707 | 422 | 25 | 16 | 640 | 39 | 728 | 1.99e-50 | 187 |
| Msa0071840 | AT3G01670.1 | 24.444 | 630 | 353 | 26 | 87 | 639 | 237 | 820 | 9.20e-33 | 135 |
| Msa0071840 | AT3G01670.2 | 24.444 | 630 | 353 | 26 | 87 | 639 | 261 | 844 | 9.62e-33 | 135 |
Find 129 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATATAGCTTATATAATT+TGG | 0.082389 | 1_2:+44133840 | Msa0071840:three_prime_UTR |
| TTATCCCTGTTGCTGTTTAT+TGG | 0.147041 | 1_2:+44131820 | Msa0071840:CDS |
| TAACCATCTTGTTTCCTAAA+AGG | 0.185586 | 1_2:-44132956 | None:intergenic |
| TAAGAGAGCATTTGAACTTT+TGG | 0.194897 | 1_2:+44132840 | Msa0071840:CDS |
| GCTGCTTTCACTTTGGAATA+TGG | 0.196918 | 1_2:+44131579 | Msa0071840:CDS |
| TGGTGGTGCCATCATATATT+AGG | 0.251348 | 1_2:-44132452 | None:intergenic |
| AGCTTCATTGTGCGAAATTC+TGG | 0.265635 | 1_2:-44131252 | None:intergenic |
| AAGAAATCTATAATATCTTT+AGG | 0.277385 | 1_2:-44132396 | None:intergenic |
| CTATATAGCTTATATAATTT+GGG | 0.294561 | 1_2:+44133841 | Msa0071840:three_prime_UTR |
| TTATCAGTAAATAAGTAAAT+TGG | 0.307838 | 1_2:-44130312 | None:intergenic |
| ATATTGATAAATTCAACTTT+AGG | 0.321318 | 1_2:-44130338 | None:intergenic |
| CAAGGGTGGAAAATAAATTA+TGG | 0.321706 | 1_2:+44133972 | Msa0071840:three_prime_UTR |
| AAGAATCAAATCTGGTCTTC+TGG | 0.333101 | 1_2:-44132754 | None:intergenic |
| AGATTTGGTGGAGTTGATAA+TGG | 0.334362 | 1_2:+44131707 | Msa0071840:CDS |
| GTCCCGGTGTTGGGCCCTTT+AGG | 0.341084 | 1_2:+44132875 | Msa0071840:CDS |
| ATTATCCAATAAACAGCAAC+AGG | 0.344665 | 1_2:-44131825 | None:intergenic |
| AAACTAATCAAATCACAAAT+AGG | 0.346211 | 1_2:+44132220 | Msa0071840:CDS |
| ACACGTCCACAAGTAGGATT+TGG | 0.347065 | 1_2:-44133709 | None:intergenic |
| AAGCTTAACATTGTAGCCTT+TGG | 0.355728 | 1_2:-44133485 | None:intergenic |
| CACTGTCCCTGTCACAGATT+TGG | 0.361754 | 1_2:+44131692 | Msa0071840:CDS |
| AATCCACAAGAAGCCATAAA+AGG | 0.362833 | 1_2:+44132680 | Msa0071840:CDS |
| CATTCATTATTTCACCTAAA+GGG | 0.366267 | 1_2:-44132889 | None:intergenic |
| AAGCCTATCGTCCCGGTGTT+GGG | 0.368586 | 1_2:+44132866 | Msa0071840:CDS |
| GCTTCCATTGTTGCTGCTAC+TGG | 0.377751 | 1_2:+44131849 | Msa0071840:CDS |
| AAAGGCATGAAACTATCTTA+AGG | 0.378342 | 1_2:+44133278 | Msa0071840:CDS |
| AATGAAGCTGATTTCTTGCC+AGG | 0.380951 | 1_2:+44131266 | Msa0071840:CDS |
| TGAGACTCATCCAGATCAAA+TGG | 0.384707 | 1_2:-44130392 | None:intergenic |
| ATTCTTCAAAGAATCAAATC+TGG | 0.385444 | 1_2:-44132762 | None:intergenic |
| GACAGATACATATTCATCTA+TGG | 0.392442 | 1_2:+44133202 | Msa0071840:CDS |
| TTCTGTCCAATGTTATACTT+AGG | 0.403805 | 1_2:+44130486 | Msa0071840:CDS |
| AACAGCTGAAAACCTATTCA+TGG | 0.408837 | 1_2:+44131532 | Msa0071840:CDS |
| AACCATCTTGTTTCCTAAAA+GGG | 0.413161 | 1_2:-44132955 | None:intergenic |
| TCATTCATTATTTCACCTAA+AGG | 0.415370 | 1_2:-44132890 | None:intergenic |
| CTCTATCCATGACAGATTGC+AGG | 0.421873 | 1_2:+44132655 | Msa0071840:CDS |
| ATCTATAATATCTTTAGGAT+TGG | 0.424394 | 1_2:-44132391 | None:intergenic |
| TCTTCTGAGTTACCTGGCAT+TGG | 0.425740 | 1_2:+44132812 | Msa0071840:CDS |
| TAAGCCTATCGTCCCGGTGT+TGG | 0.429788 | 1_2:+44132865 | Msa0071840:CDS |
| TGGCATTGGAGAAAACAAAA+AGG | 0.433834 | 1_2:+44133260 | Msa0071840:CDS |
| GAGAGTGAATCTTGGAATAC+AGG | 0.438911 | 1_2:+44133021 | Msa0071840:CDS |
| CCAAGACTTCACCTTGGCAT+TGG | 0.446662 | 1_2:+44133246 | Msa0071840:CDS |
| AAGGCATGAAACTATCTTAA+GGG | 0.447013 | 1_2:+44133279 | Msa0071840:CDS |
| CAAAGAGTATTATGAGACTA+AGG | 0.449914 | 1_2:+44133600 | Msa0071840:CDS |
| TCATCCAGATCAAATGGGTT+TGG | 0.454944 | 1_2:-44130386 | None:intergenic |
| GTGAATCTGAGAGAGGGAAG+AGG | 0.455450 | 1_2:+44133801 | Msa0071840:exon |
| GTTTGGCAGCTTAGTTCCAT+TGG | 0.455711 | 1_2:-44130369 | None:intergenic |
| AATGTTGATAATAATATCAA+TGG | 0.456433 | 1_2:+44133661 | Msa0071840:CDS |
| CTTGTTTACCCTTTGATGCA+AGG | 0.463925 | 1_2:+44133954 | Msa0071840:three_prime_UTR |
| GCTGCCAAACCCATTTGATC+TGG | 0.469209 | 1_2:+44130382 | Msa0071840:CDS |
| ATTCACTTCTTGCCATTCTG+TGG | 0.472187 | 1_2:-44133784 | None:intergenic |
| CACGTCCACAAGTAGGATTT+GGG | 0.476123 | 1_2:-44133708 | None:intergenic |
| TTCTGGTCATCGTCAAAGAC+GGG | 0.481056 | 1_2:-44132737 | None:intergenic |
| GCTGCTACTGGCAACATCAT+TGG | 0.481288 | 1_2:+44131861 | Msa0071840:CDS |
| AGCCCTAGCTGCTTTCACTT+TGG | 0.482034 | 1_2:+44131572 | Msa0071840:CDS |
| CATTGGACAGAATGTGGAAA+AGG | 0.482515 | 1_2:-44130475 | None:intergenic |
| TTGTTTACCCTTTGATGCAA+GGG | 0.484761 | 1_2:+44133955 | Msa0071840:three_prime_UTR |
| CACCTAAAGGGCCCAACACC+GGG | 0.486188 | 1_2:-44132877 | None:intergenic |
| TCAGCCAAAGTTTGATACAT+AGG | 0.489989 | 1_2:-44133523 | None:intergenic |
| CAAACAAGATCCACAAGGTT+GGG | 0.491870 | 1_2:+44133453 | Msa0071840:CDS |
| TGTCCCTGTCACAGATTTGG+TGG | 0.499340 | 1_2:+44131695 | Msa0071840:CDS |
| GTAACAAAGAGAGTGAATCT+TGG | 0.499439 | 1_2:+44133013 | Msa0071840:CDS |
| AACTCCACCAAATCTGTGAC+AGG | 0.502153 | 1_2:-44131699 | None:intergenic |
| TCTGGATGAGTCTCAAATCC+TGG | 0.503173 | 1_2:+44130400 | Msa0071840:CDS |
| CCAATGCCAAGGTGAAGTCT+TGG | 0.503482 | 1_2:-44133246 | None:intergenic |
| ATATTCATGAGTGGGCCACT+TGG | 0.511273 | 1_2:+44131742 | Msa0071840:CDS |
| TCTGTCCAATGTTATACTTA+GGG | 0.511965 | 1_2:+44130487 | Msa0071840:CDS |
| ATCAATATGTCATTGTCCAA+TGG | 0.513280 | 1_2:+44130353 | Msa0071840:exon |
| GAGTCAGATAAACTTTATCC+AGG | 0.515757 | 1_2:-44130418 | None:intergenic |
| GGGCCCAACACCGGGACGAT+AGG | 0.519433 | 1_2:-44132869 | None:intergenic |
| GAGACTCATCCAGATCAAAT+GGG | 0.522606 | 1_2:-44130391 | None:intergenic |
| GGAGATTATCTCCATTGCGT+TGG | 0.528009 | 1_2:-44132431 | None:intergenic |
| AGGCTAGCAGAAAGCAGAGC+TGG | 0.533062 | 1_2:+44131222 | Msa0071840:CDS |
| TCTCACAGTCTATAGCATCT+TGG | 0.533674 | 1_2:-44133399 | None:intergenic |
| GATAATCTCCTAATATATGA+TGG | 0.534586 | 1_2:+44132444 | Msa0071840:CDS |
| TATCACACTTGTCATCATCA+TGG | 0.537605 | 1_2:-44130445 | None:intergenic |
| TCCTACTTGTGGACGTGTGA+TGG | 0.538034 | 1_2:+44133714 | Msa0071840:CDS |
| TCAAACAAGATCCACAAGGT+TGG | 0.540906 | 1_2:+44133452 | Msa0071840:CDS |
| ATTCCAAAGTGAAAGCAGCT+AGG | 0.545603 | 1_2:-44131575 | None:intergenic |
| TCACCTAAAGGGCCCAACAC+CGG | 0.548774 | 1_2:-44132878 | None:intergenic |
| TGAGCCTATGTATCAAACTT+TGG | 0.551435 | 1_2:+44133519 | Msa0071840:CDS |
| TTCCAAAGTGAAAGCAGCTA+GGG | 0.561594 | 1_2:-44131574 | None:intergenic |
| TTGGGATAAGCCTATCGTCC+CGG | 0.562483 | 1_2:+44132859 | Msa0071840:CDS |
| GTTAACAAGTTGATCTGATG+AGG | 0.564705 | 1_2:-44131631 | None:intergenic |
| ATAATAGAACACTATCACTT+GGG | 0.564964 | 1_2:+44133310 | Msa0071840:CDS |
| GATTACTCTTCTGAGTTACC+TGG | 0.567472 | 1_2:+44132806 | Msa0071840:CDS |
| TGTGTGAGTTACTAGGTGAA+AGG | 0.570225 | 1_2:+44133178 | Msa0071840:intron |
| CTTCTGGTCATCGTCAAAGA+CGG | 0.570611 | 1_2:-44132738 | None:intergenic |
| TATAATAGAACACTATCACT+TGG | 0.574606 | 1_2:+44133309 | Msa0071840:CDS |
| ACAGCTGAAAACCTATTCAT+GGG | 0.576028 | 1_2:+44131533 | Msa0071840:CDS |
| TGGGCCACTTGGTCTAGTGT+TGG | 0.577097 | 1_2:+44131753 | Msa0071840:CDS |
| TTTCATCGTCAACTTTGTTG+AGG | 0.579673 | 1_2:-44132619 | None:intergenic |
| GATTGTCCTGCAATCTGTCA+TGG | 0.583670 | 1_2:-44132661 | None:intergenic |
| TGCAATGCATCAGACAAAGA+AGG | 0.586363 | 1_2:-44131795 | None:intergenic |
| TTTACCCTTTGATGCAAGGG+TGG | 0.587178 | 1_2:+44133958 | Msa0071840:three_prime_UTR |
| CAAGAAGTGAATCTGAGAGA+GGG | 0.590834 | 1_2:+44133795 | Msa0071840:exon |
| GTATAACATTGGACAGAATG+TGG | 0.592797 | 1_2:-44130481 | None:intergenic |
| GTTTACCCTAAGTATAACAT+TGG | 0.592906 | 1_2:-44130492 | None:intergenic |
| GTTGCCAGTAGCAGCAACAA+TGG | 0.594515 | 1_2:-44131853 | None:intergenic |
| CTTGCATCAAAGGGTAAACA+AGG | 0.595102 | 1_2:-44133953 | None:intergenic |
| ATAGCGTTCGCCACGAGGCG+TGG | 0.598525 | 1_2:-44131481 | None:intergenic |
| AATAATGAATGATGATGCAA+TGG | 0.598632 | 1_2:+44132901 | Msa0071840:CDS |
| TGCTTCTGCATATTCATGAG+TGG | 0.600233 | 1_2:+44131733 | Msa0071840:CDS |
| CAAATAGGTGACACACTTGG+TGG | 0.600326 | 1_2:+44132235 | Msa0071840:CDS |
| TCATGCCCAAATCCTACTTG+TGG | 0.601063 | 1_2:+44133703 | Msa0071840:CDS |
| AAGCTTCTGATCCAACGCAA+TGG | 0.610030 | 1_2:+44132420 | Msa0071840:CDS |
| GTGAGAATAACCCAACCTTG+TGG | 0.613884 | 1_2:-44133463 | None:intergenic |
| GCTTCTGCATATTCATGAGT+GGG | 0.617235 | 1_2:+44131734 | Msa0071840:CDS |
| TCTCTTATGAGTCCAATGCC+AGG | 0.617372 | 1_2:-44132824 | None:intergenic |
| GGTTGGGTTATTCTCACCAA+AGG | 0.619142 | 1_2:+44133469 | Msa0071840:CDS |
| GATGATGCTGCTCCACAGAA+TGG | 0.625297 | 1_2:+44133772 | Msa0071840:CDS |
| GCAAGAAGTGAATCTGAGAG+AGG | 0.633849 | 1_2:+44133794 | Msa0071840:exon |
| TCACAAATAGGTGACACACT+TGG | 0.636561 | 1_2:+44132232 | Msa0071840:CDS |
| TGCACATAGCGTTCGCCACG+AGG | 0.640747 | 1_2:-44131486 | None:intergenic |
| TCCATCACACGTCCACAAGT+AGG | 0.659029 | 1_2:-44133715 | None:intergenic |
| AGATACATATTCATCTATGG+AGG | 0.660945 | 1_2:+44133205 | Msa0071840:CDS |
| TCTGTGGAGCAGCATCATCA+CGG | 0.661090 | 1_2:-44133768 | None:intergenic |
| ATAACCAACACTAGACCAAG+TGG | 0.664243 | 1_2:-44131757 | None:intergenic |
| ATGGATCCAAGACTTCACCT+TGG | 0.666513 | 1_2:+44133240 | Msa0071840:CDS |
| TCAACATTGATCATTTCACA+TGG | 0.671206 | 1_2:-44133646 | None:intergenic |
| CAGATGATAACCACGCCTCG+TGG | 0.673775 | 1_2:+44131471 | Msa0071840:intron |
| TCTGGTCATCGTCAAAGACG+GGG | 0.681366 | 1_2:-44132736 | None:intergenic |
| TACTTGTGGACGTGTGATGG+AGG | 0.687419 | 1_2:+44133717 | Msa0071840:CDS |
| ACTCCACCAAATCTGTGACA+GGG | 0.697458 | 1_2:-44131698 | None:intergenic |
| CACACTTGTCATCATCATGG+AGG | 0.700312 | 1_2:-44130442 | None:intergenic |
| GCATCAAAGGGTAAACAAGG+TGG | 0.700502 | 1_2:-44133950 | None:intergenic |
| ATGTGCATCAAACAACAATG+TGG | 0.704575 | 1_2:+44131502 | Msa0071840:CDS |
| TGTCTCAAACAAGATCCACA+AGG | 0.723177 | 1_2:+44133448 | Msa0071840:CDS |
| TTATCCAATAAACAGCAACA+GGG | 0.754754 | 1_2:-44131824 | None:intergenic |
| GTGGAGCAGCATCATCACGG+TGG | 0.758327 | 1_2:-44133765 | None:intergenic |
| ATGAGGTTGAAGTCTCAGTG+AGG | 0.764223 | 1_2:-44131614 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGATATTTTTTATTTTTTTT+TGG | + | chr1_2:44131157-44131176 | Msa0071840:intron | 10.0% |
| !!! | TTTTATAATGTTTCAAAAAT+GGG | + | chr1_2:44131367-44131386 | Msa0071840:intron | 10.0% |
| !! | TTATCAGTAAATAAGTAAAT+TGG | - | chr1_2:44130315-44130334 | None:intergenic | 15.0% |
| !! | ATATTGATAAATTCAACTTT+AGG | - | chr1_2:44130341-44130360 | None:intergenic | 15.0% |
| !! | AATAAAAAATGAACATAAGA+AGG | - | chr1_2:44130521-44130540 | None:intergenic | 15.0% |
| !!! | CAAATATAAGTTAAATTTTG+AGG | - | chr1_2:44131002-44131021 | None:intergenic | 15.0% |
| !!! | CTTTTATAATGTTTCAAAAA+TGG | + | chr1_2:44131366-44131385 | Msa0071840:intron | 15.0% |
| !!! | TTTTTTTTTTTTCTTGTTTC+AGG | + | chr1_2:44132131-44132150 | Msa0071840:intron | 15.0% |
| !!! | TTTTTTTTTTTCTTGTTTCA+GGG | + | chr1_2:44132132-44132151 | Msa0071840:intron | 15.0% |
| !!! | ATTTTTTTTGTATACATGTT+AGG | + | chr1_2:44132260-44132279 | Msa0071840:intron | 15.0% |
| !!! | AAGTTATTTTCAATCATTTT+TGG | + | chr1_2:44132288-44132307 | Msa0071840:intron | 15.0% |
| !! | AAGAAATCTATAATATCTTT+AGG | - | chr1_2:44132399-44132418 | None:intergenic | 15.0% |
| !! | TTAAGTTTATTATAAGATCT+AGG | + | chr1_2:44133084-44133103 | Msa0071840:intron | 15.0% |
| !!! | AATGTTGATAATAATATCAA+TGG | + | chr1_2:44133661-44133680 | Msa0071840:CDS | 15.0% |
| !! | CTATATAGCTTATATAATTT+GGG | + | chr1_2:44133841-44133860 | Msa0071840:three_prime_UTR | 15.0% |
| !!! | TATAACATTTTTCTATGTAG+TGG | - | chr1_2:44130838-44130857 | None:intergenic | 20.0% |
| !! | AAAAAATAAAAAATATCCGG+CGG | - | chr1_2:44131155-44131174 | None:intergenic | 20.0% |
| !! | TGTCTTACATTTATAACTTA+AGG | - | chr1_2:44131929-44131948 | None:intergenic | 20.0% |
| !! | AGAACGAAAAATAAACTTAA+CGG | - | chr1_2:44131959-44131978 | None:intergenic | 20.0% |
| !! | AAACTAATCAAATCACAAAT+AGG | + | chr1_2:44132220-44132239 | Msa0071840:CDS | 20.0% |
| !!! | ATCTATAATATCTTTAGGAT+TGG | - | chr1_2:44132394-44132413 | None:intergenic | 20.0% |
| !!! | TATTATAAGATCTAGGTTTT+AGG | + | chr1_2:44133091-44133110 | Msa0071840:intron | 20.0% |
| !! | GCTATATAGCTTATATAATT+TGG | + | chr1_2:44133840-44133859 | Msa0071840:three_prime_UTR | 20.0% |
| ! | TAATGATTTCCTATAAAGCA+CGG | + | chr1_2:44130572-44130591 | Msa0071840:intron | 25.0% |
| !!! | TTACTTTTGTGGATTAAAGT+TGG | - | chr1_2:44130920-44130939 | None:intergenic | 25.0% |
| !!! | ATCGTAAACTTTTACTTTTG+TGG | - | chr1_2:44130931-44130950 | None:intergenic | 25.0% |
| ! | TCTTAGACATTATGACAATA+AGG | - | chr1_2:44130954-44130973 | None:intergenic | 25.0% |
| ! | ACAAGGGAAAACAAATATAA+GGG | - | chr1_2:44131013-44131032 | None:intergenic | 25.0% |
| ! | AACAAGGGAAAACAAATATA+AGG | - | chr1_2:44131014-44131033 | None:intergenic | 25.0% |
| ! | AAAAATAAAAAATATCCGGC+GGG | - | chr1_2:44131154-44131173 | None:intergenic | 25.0% |
| !! | TGGAGAACTAACATTTTTAT+TGG | + | chr1_2:44131177-44131196 | Msa0071840:intron | 25.0% |
| ! | TTATGCCATAATAATTAACC+TGG | - | chr1_2:44131287-44131306 | None:intergenic | 25.0% |
| !!! | TCTGTTTTGAATTTGATTCA+GGG | - | chr1_2:44131667-44131686 | None:intergenic | 25.0% |
| !!! | TTCTGTTTTGAATTTGATTC+AGG | - | chr1_2:44131668-44131687 | None:intergenic | 25.0% |
| ! | TATAACTTAAGGAACCAAAA+TGG | - | chr1_2:44131918-44131937 | None:intergenic | 25.0% |
| !!! | TTTTGTTGATTCTAAGTTGA+AGG | + | chr1_2:44132189-44132208 | Msa0071840:CDS | 25.0% |
| ! | GAATCTGCAACAAATATATA+TGG | - | chr1_2:44132336-44132355 | None:intergenic | 25.0% |
| ! | GATAATCTCCTAATATATGA+TGG | + | chr1_2:44132444-44132463 | Msa0071840:CDS | 25.0% |
| ! | ATAACAATAAACAAAAGTCG+AGG | - | chr1_2:44132502-44132521 | None:intergenic | 25.0% |
| !!! | TTTGTTTTCATGTATCAAAC+AGG | + | chr1_2:44132550-44132569 | Msa0071840:intron | 25.0% |
| !!! | CTCTTTTTTGTAACCTTTTA+TGG | - | chr1_2:44132696-44132715 | None:intergenic | 25.0% |
| ! | CATAAAAGGTTACAAAAAAG+AGG | + | chr1_2:44132694-44132713 | Msa0071840:CDS | 25.0% |
| ! | ATTCTTCAAAGAATCAAATC+TGG | - | chr1_2:44132765-44132784 | None:intergenic | 25.0% |
| ! | CATTCATTATTTCACCTAAA+GGG | - | chr1_2:44132892-44132911 | None:intergenic | 25.0% |
| ! | TCATTCATTATTTCACCTAA+AGG | - | chr1_2:44132893-44132912 | None:intergenic | 25.0% |
| !! | AATAATGAATGATGATGCAA+TGG | + | chr1_2:44132901-44132920 | Msa0071840:CDS | 25.0% |
| !!! | AATGGACTTGATTTTTCAAT+GGG | + | chr1_2:44132919-44132938 | Msa0071840:CDS | 25.0% |
| ! | GTTATGATCTTACTCAAAAA+TGG | + | chr1_2:44132975-44132994 | Msa0071840:CDS | 25.0% |
| ! | TATAATAGAACACTATCACT+TGG | + | chr1_2:44133309-44133328 | Msa0071840:CDS | 25.0% |
| ! | ATAATAGAACACTATCACTT+GGG | + | chr1_2:44133310-44133329 | Msa0071840:CDS | 25.0% |
| ATCAATATGTCATTGTCCAA+TGG | + | chr1_2:44130353-44130372 | Msa0071840:exon | 30.0% | |
| TTCTGTCCAATGTTATACTT+AGG | + | chr1_2:44130486-44130505 | Msa0071840:CDS | 30.0% | |
| TCTGTCCAATGTTATACTTA+GGG | + | chr1_2:44130487-44130506 | Msa0071840:CDS | 30.0% | |
| GTTTACCCTAAGTATAACAT+TGG | - | chr1_2:44130495-44130514 | None:intergenic | 30.0% | |
| TATGAAACACAGACAATCTT+TGG | - | chr1_2:44130720-44130739 | None:intergenic | 30.0% | |
| ATATCAGTACATTGAGAAAG+TGG | - | chr1_2:44130785-44130804 | None:intergenic | 30.0% | |
| CATAGGCTTGAAATAAACAA+GGG | - | chr1_2:44131029-44131048 | None:intergenic | 30.0% | |
| ACATAGGCTTGAAATAAACA+AGG | - | chr1_2:44131030-44131049 | None:intergenic | 30.0% | |
| ! | CGTAGGTTTGAAATAAACAA+GGG | - | chr1_2:44131119-44131138 | None:intergenic | 30.0% |
| TCTTGCCAGGTTAATTATTA+TGG | + | chr1_2:44131279-44131298 | Msa0071840:intron | 30.0% | |
| TTATCCAATAAACAGCAACA+GGG | - | chr1_2:44131827-44131846 | None:intergenic | 30.0% | |
| ATTATCCAATAAACAGCAAC+AGG | - | chr1_2:44131828-44131847 | None:intergenic | 30.0% | |
| ! | ATCTTCTTTTCGTTCCATTT+TGG | + | chr1_2:44131901-44131920 | Msa0071840:intron | 30.0% |
| ! | AAGAGGATTTCAAGATTTTG+TGG | + | chr1_2:44132711-44132730 | Msa0071840:CDS | 30.0% |
| ! | TAAGATCAGATTTTATGCAG+TGG | + | chr1_2:44132784-44132803 | Msa0071840:CDS | 30.0% |
| !!! | TAAGAGAGCATTTGAACTTT+TGG | + | chr1_2:44132840-44132859 | Msa0071840:CDS | 30.0% |
| !!! | AAGAGAGCATTTGAACTTTT+GGG | + | chr1_2:44132841-44132860 | Msa0071840:CDS | 30.0% |
| !! | CAATGGACTTGATTTTTCAA+TGG | + | chr1_2:44132918-44132937 | Msa0071840:CDS | 30.0% |
| !! | ATGGACTTGATTTTTCAATG+GGG | + | chr1_2:44132920-44132939 | Msa0071840:CDS | 30.0% |
| ! | AACCATCTTGTTTCCTAAAA+GGG | - | chr1_2:44132958-44132977 | None:intergenic | 30.0% |
| ! | TAACCATCTTGTTTCCTAAA+AGG | - | chr1_2:44132959-44132978 | None:intergenic | 30.0% |
| ATCTTACTCAAAAATGGAAG+TGG | + | chr1_2:44132981-44133000 | Msa0071840:CDS | 30.0% | |
| ! | TCAAAAATGGAAGTGGTTTT+GGG | + | chr1_2:44132988-44133007 | Msa0071840:CDS | 30.0% |
| GACAGATACATATTCATCTA+TGG | + | chr1_2:44133202-44133221 | Msa0071840:CDS | 30.0% | |
| AGATACATATTCATCTATGG+AGG | + | chr1_2:44133205-44133224 | Msa0071840:CDS | 30.0% | |
| ! | AAAGGCATGAAACTATCTTA+AGG | + | chr1_2:44133278-44133297 | Msa0071840:CDS | 30.0% |
| AAGGCATGAAACTATCTTAA+GGG | + | chr1_2:44133279-44133298 | Msa0071840:CDS | 30.0% | |
| TCTATTTCAATCCAAAAACG+AGG | - | chr1_2:44133358-44133377 | None:intergenic | 30.0% | |
| ! | GCTACAATGTTAAGCTTTTA+GGG | + | chr1_2:44133491-44133510 | Msa0071840:CDS | 30.0% |
| !! | CAAAGAGTATTATGAGACTA+AGG | + | chr1_2:44133600-44133619 | Msa0071840:CDS | 30.0% |
| TCAACATTGATCATTTCACA+TGG | - | chr1_2:44133649-44133668 | None:intergenic | 30.0% | |
| CAAGGGTGGAAAATAAATTA+TGG | + | chr1_2:44133972-44133991 | Msa0071840:three_prime_UTR | 30.0% | |
| GAGTCAGATAAACTTTATCC+AGG | - | chr1_2:44130421-44130440 | None:intergenic | 35.0% | |
| TATCACACTTGTCATCATCA+TGG | - | chr1_2:44130448-44130467 | None:intergenic | 35.0% | |
| GTATAACATTGGACAGAATG+TGG | - | chr1_2:44130484-44130503 | None:intergenic | 35.0% | |
| TGTAATCATATGTGTCGTGT+CGG | + | chr1_2:44130655-44130674 | Msa0071840:intron | 35.0% | |
| ACACAGACAATCTTTGGATT+AGG | - | chr1_2:44130714-44130733 | None:intergenic | 35.0% | |
| TAGTAGACCACCTTAAACTT+TGG | + | chr1_2:44130888-44130907 | Msa0071840:intron | 35.0% | |
| GCTAGAGTCAAAGATAACAT+AGG | - | chr1_2:44131046-44131065 | None:intergenic | 35.0% | |
| ! | GCGTAGGTTTGAAATAAACA+AGG | - | chr1_2:44131120-44131139 | None:intergenic | 35.0% |
| TACCAAATGAATCACAGACA+AGG | + | chr1_2:44131202-44131221 | Msa0071840:intron | 35.0% | |
| !! | ATCTGTTGATAATGTCAGAG+AGG | - | chr1_2:44131456-44131475 | None:intergenic | 35.0% |
| ATGTGCATCAAACAACAATG+TGG | + | chr1_2:44131502-44131521 | Msa0071840:CDS | 35.0% | |
| AACAGCTGAAAACCTATTCA+TGG | + | chr1_2:44131532-44131551 | Msa0071840:CDS | 35.0% | |
| ACAGCTGAAAACCTATTCAT+GGG | + | chr1_2:44131533-44131552 | Msa0071840:CDS | 35.0% | |
| !! | GTTAACAAGTTGATCTGATG+AGG | - | chr1_2:44131634-44131653 | None:intergenic | 35.0% |
| !! | AGATTTGGTGGAGTTGATAA+TGG | + | chr1_2:44131707-44131726 | Msa0071840:CDS | 35.0% |
| !! | TTATCCCTGTTGCTGTTTAT+TGG | + | chr1_2:44131820-44131839 | Msa0071840:CDS | 35.0% |
| !!! | AGTGCTAACCGTTTTGTTTT+TGG | - | chr1_2:44132475-44132494 | None:intergenic | 35.0% |
| TTTCATCGTCAACTTTGTTG+AGG | - | chr1_2:44132622-44132641 | None:intergenic | 35.0% | |
| AATCCACAAGAAGCCATAAA+AGG | + | chr1_2:44132680-44132699 | Msa0071840:CDS | 35.0% | |
| ! | TAACCTTTTATGGCTTCTTG+TGG | - | chr1_2:44132686-44132705 | None:intergenic | 35.0% |
| ! | AAGAATCAAATCTGGTCTTC+TGG | - | chr1_2:44132757-44132776 | None:intergenic | 35.0% |
| !! | TGGACTTGATTTTTCAATGG+GGG | + | chr1_2:44132921-44132940 | Msa0071840:CDS | 35.0% |
| ! | CTCAAAAATGGAAGTGGTTT+TGG | + | chr1_2:44132987-44133006 | Msa0071840:CDS | 35.0% |
| GTAACAAAGAGAGTGAATCT+TGG | + | chr1_2:44133013-44133032 | Msa0071840:CDS | 35.0% | |
| ! | TGTTTTCTGTGTGAGTTACT+AGG | + | chr1_2:44133171-44133190 | Msa0071840:intron | 35.0% |
| !!! | TTTTGTTTTCTCCAATGCCA+AGG | - | chr1_2:44133260-44133279 | None:intergenic | 35.0% |
| ! | TGGCATTGGAGAAAACAAAA+AGG | + | chr1_2:44133260-44133279 | Msa0071840:CDS | 35.0% |
| AAAAACGAGGAACGATCTTA+GGG | - | chr1_2:44133345-44133364 | None:intergenic | 35.0% | |
| AAGCTTAACATTGTAGCCTT+TGG | - | chr1_2:44133488-44133507 | None:intergenic | 35.0% | |
| ! | GGCTACAATGTTAAGCTTTT+AGG | + | chr1_2:44133490-44133509 | Msa0071840:CDS | 35.0% |
| !!! | AATGTTAAGCTTTTAGGGCA+TGG | + | chr1_2:44133496-44133515 | Msa0071840:CDS | 35.0% |
| TGAGCCTATGTATCAAACTT+TGG | + | chr1_2:44133519-44133538 | Msa0071840:CDS | 35.0% | |
| TCAGCCAAAGTTTGATACAT+AGG | - | chr1_2:44133526-44133545 | None:intergenic | 35.0% | |
| !! | CTTTGGCTGATTTTGATGTA+TGG | + | chr1_2:44133536-44133555 | Msa0071840:CDS | 35.0% |
| ! | GATAGAGTGCTACAAAAAGA+AGG | + | chr1_2:44133562-44133581 | Msa0071840:CDS | 35.0% |
| TTGTTTACCCTTTGATGCAA+GGG | + | chr1_2:44133955-44133974 | Msa0071840:three_prime_UTR | 35.0% | |
| ! | TCATCCAGATCAAATGGGTT+TGG | - | chr1_2:44130389-44130408 | None:intergenic | 40.0% |
| GAGACTCATCCAGATCAAAT+GGG | - | chr1_2:44130394-44130413 | None:intergenic | 40.0% | |
| TGAGACTCATCCAGATCAAA+TGG | - | chr1_2:44130395-44130414 | None:intergenic | 40.0% | |
| CATTGGACAGAATGTGGAAA+AGG | - | chr1_2:44130478-44130497 | None:intergenic | 40.0% | |
| GTCAGTATCCGTATCATATC+TGG | - | chr1_2:44130601-44130620 | None:intergenic | 40.0% | |
| ! | TCTTTGGATTAGGTGTGTCT+TGG | - | chr1_2:44130704-44130723 | None:intergenic | 40.0% |
| TTGGTTAGCGCCAAAGTTTA+AGG | - | chr1_2:44130901-44130920 | None:intergenic | 40.0% | |
| ! | AGCCTTGTCTGTGATTCATT+TGG | - | chr1_2:44131207-44131226 | None:intergenic | 40.0% |
| AGCTTCATTGTGCGAAATTC+TGG | - | chr1_2:44131255-44131274 | None:intergenic | 40.0% | |
| ! | AATGAAGCTGATTTCTTGCC+AGG | + | chr1_2:44131266-44131285 | Msa0071840:CDS | 40.0% |
| ! | TGCTTTTGCATCCCATGAAT+AGG | - | chr1_2:44131547-44131566 | None:intergenic | 40.0% |
| TTCCAAAGTGAAAGCAGCTA+GGG | - | chr1_2:44131577-44131596 | None:intergenic | 40.0% | |
| ATTCCAAAGTGAAAGCAGCT+AGG | - | chr1_2:44131578-44131597 | None:intergenic | 40.0% | |
| !! | GCTGCTTTCACTTTGGAATA+TGG | + | chr1_2:44131579-44131598 | Msa0071840:CDS | 40.0% |
| TGCTTCTGCATATTCATGAG+TGG | + | chr1_2:44131733-44131752 | Msa0071840:CDS | 40.0% | |
| GCTTCTGCATATTCATGAGT+GGG | + | chr1_2:44131734-44131753 | Msa0071840:CDS | 40.0% | |
| ATAACCAACACTAGACCAAG+TGG | - | chr1_2:44131760-44131779 | None:intergenic | 40.0% | |
| TGCAATGCATCAGACAAAGA+AGG | - | chr1_2:44131798-44131817 | None:intergenic | 40.0% | |
| TCACAAATAGGTGACACACT+TGG | + | chr1_2:44132232-44132251 | Msa0071840:CDS | 40.0% | |
| !! | TGGTGGTGCCATCATATATT+AGG | - | chr1_2:44132455-44132474 | None:intergenic | 40.0% |
| TGGCACCACCAAAAACAAAA+CGG | + | chr1_2:44132464-44132483 | Msa0071840:CDS | 40.0% | |
| !!! | GCTAACCGTTTTGTTTTTGG+TGG | - | chr1_2:44132472-44132491 | None:intergenic | 40.0% |
| GATTACTCTTCTGAGTTACC+TGG | + | chr1_2:44132806-44132825 | Msa0071840:CDS | 40.0% | |
| !! | CTCCCTTTTAGGAAACAAGA+TGG | + | chr1_2:44132953-44132972 | Msa0071840:CDS | 40.0% |
| GAGAGTGAATCTTGGAATAC+AGG | + | chr1_2:44133021-44133040 | Msa0071840:CDS | 40.0% | |
| TGTGTGAGTTACTAGGTGAA+AGG | + | chr1_2:44133178-44133197 | Msa0071840:intron | 40.0% | |
| ATGGAGGCAGTGACAAAAAA+TGG | + | chr1_2:44133221-44133240 | Msa0071840:CDS | 40.0% | |
| CAAAAACGAGGAACGATCTT+AGG | - | chr1_2:44133346-44133365 | None:intergenic | 40.0% | |
| ! | CTAAGATCGTTCCTCGTTTT+TGG | + | chr1_2:44133344-44133363 | Msa0071840:CDS | 40.0% |
| TCTCACAGTCTATAGCATCT+TGG | - | chr1_2:44133402-44133421 | None:intergenic | 40.0% | |
| TGTCTCAAACAAGATCCACA+AGG | + | chr1_2:44133448-44133467 | Msa0071840:CDS | 40.0% | |
| TCAAACAAGATCCACAAGGT+TGG | + | chr1_2:44133452-44133471 | Msa0071840:CDS | 40.0% | |
| CAAACAAGATCCACAAGGTT+GGG | + | chr1_2:44133453-44133472 | Msa0071840:CDS | 40.0% | |
| ATTCACTTCTTGCCATTCTG+TGG | - | chr1_2:44133787-44133806 | None:intergenic | 40.0% | |
| CAAGAAGTGAATCTGAGAGA+GGG | + | chr1_2:44133795-44133814 | Msa0071840:exon | 40.0% | |
| CTTGCATCAAAGGGTAAACA+AGG | - | chr1_2:44133956-44133975 | None:intergenic | 40.0% | |
| CTTGTTTACCCTTTGATGCA+AGG | + | chr1_2:44133954-44133973 | Msa0071840:three_prime_UTR | 40.0% | |
| ! | TTTTCCACCCTTGCATCAAA+GGG | - | chr1_2:44133965-44133984 | None:intergenic | 40.0% |
| ! | ATTTTCCACCCTTGCATCAA+AGG | - | chr1_2:44133966-44133985 | None:intergenic | 40.0% |
| GTTTGGCAGCTTAGTTCCAT+TGG | - | chr1_2:44130372-44130391 | None:intergenic | 45.0% | |
| TCTGGATGAGTCTCAAATCC+TGG | + | chr1_2:44130400-44130419 | Msa0071840:CDS | 45.0% | |
| CACACTTGTCATCATCATGG+AGG | - | chr1_2:44130445-44130464 | None:intergenic | 45.0% | |
| ! | CATATGTGTCGTGTCGGTAT+CGG | + | chr1_2:44130661-44130680 | Msa0071840:intron | 45.0% |
| GTTAGCGCCAAAGTTTAAGG+TGG | - | chr1_2:44130898-44130917 | None:intergenic | 45.0% | |
| ATGAGGTTGAAGTCTCAGTG+AGG | - | chr1_2:44131617-44131636 | None:intergenic | 45.0% | |
| ACTCCACCAAATCTGTGACA+GGG | - | chr1_2:44131701-44131720 | None:intergenic | 45.0% | |
| AACTCCACCAAATCTGTGAC+AGG | - | chr1_2:44131702-44131721 | None:intergenic | 45.0% | |
| ATATTCATGAGTGGGCCACT+TGG | + | chr1_2:44131742-44131761 | Msa0071840:CDS | 45.0% | |
| CAAATAGGTGACACACTTGG+TGG | + | chr1_2:44132235-44132254 | Msa0071840:CDS | 45.0% | |
| AAGCTTCTGATCCAACGCAA+TGG | + | chr1_2:44132420-44132439 | Msa0071840:CDS | 45.0% | |
| GGAGATTATCTCCATTGCGT+TGG | - | chr1_2:44132434-44132453 | None:intergenic | 45.0% | |
| CTCTATCCATGACAGATTGC+AGG | + | chr1_2:44132655-44132674 | Msa0071840:CDS | 45.0% | |
| GATTGTCCTGCAATCTGTCA+TGG | - | chr1_2:44132664-44132683 | None:intergenic | 45.0% | |
| TTCTGGTCATCGTCAAAGAC+GGG | - | chr1_2:44132740-44132759 | None:intergenic | 45.0% | |
| CTTCTGGTCATCGTCAAAGA+CGG | - | chr1_2:44132741-44132760 | None:intergenic | 45.0% | |
| TCTTCTGAGTTACCTGGCAT+TGG | + | chr1_2:44132812-44132831 | Msa0071840:CDS | 45.0% | |
| TCTCTTATGAGTCCAATGCC+AGG | - | chr1_2:44132827-44132846 | None:intergenic | 45.0% | |
| ! | GGATAGATGCACTCCCTTTT+AGG | + | chr1_2:44132942-44132961 | Msa0071840:CDS | 45.0% |
| ATGGATCCAAGACTTCACCT+TGG | + | chr1_2:44133240-44133259 | Msa0071840:CDS | 45.0% | |
| GTGAGAATAACCCAACCTTG+TGG | - | chr1_2:44133466-44133485 | None:intergenic | 45.0% | |
| GGTTGGGTTATTCTCACCAA+AGG | + | chr1_2:44133469-44133488 | Msa0071840:CDS | 45.0% | |
| TCATGCCCAAATCCTACTTG+TGG | + | chr1_2:44133703-44133722 | Msa0071840:CDS | 45.0% | |
| CACGTCCACAAGTAGGATTT+GGG | - | chr1_2:44133711-44133730 | None:intergenic | 45.0% | |
| ACACGTCCACAAGTAGGATT+TGG | - | chr1_2:44133712-44133731 | None:intergenic | 45.0% | |
| GCAAGAAGTGAATCTGAGAG+AGG | + | chr1_2:44133794-44133813 | Msa0071840:exon | 45.0% | |
| GCATCAAAGGGTAAACAAGG+TGG | - | chr1_2:44133953-44133972 | None:intergenic | 45.0% | |
| TTTACCCTTTGATGCAAGGG+TGG | + | chr1_2:44133958-44133977 | Msa0071840:three_prime_UTR | 45.0% | |
| !! | AAAAAAAAATAAAAAATATC+CGG | - | chr1_2:44131158-44131177 | None:intergenic | 5.0% |
| GCTGCCAAACCCATTTGATC+TGG | + | chr1_2:44130382-44130401 | Msa0071840:CDS | 50.0% | |
| ATCTGGCGTCCGTGCTTTAT+AGG | - | chr1_2:44130584-44130603 | None:intergenic | 50.0% | |
| CACGGACGCCAGATATGATA+CGG | + | chr1_2:44130590-44130609 | Msa0071840:intron | 50.0% | |
| !! | GTGTCTTGGTGTCGACACAT+CGG | - | chr1_2:44130690-44130709 | None:intergenic | 50.0% |
| TGACTCTAGCTACTGTGCGT+TGG | + | chr1_2:44131056-44131075 | Msa0071840:intron | 50.0% | |
| ! | AGCCCTAGCTGCTTTCACTT+TGG | + | chr1_2:44131572-44131591 | Msa0071840:CDS | 50.0% |
| CACTGTCCCTGTCACAGATT+TGG | + | chr1_2:44131692-44131711 | Msa0071840:CDS | 50.0% | |
| TGTCCCTGTCACAGATTTGG+TGG | + | chr1_2:44131695-44131714 | Msa0071840:CDS | 50.0% | |
| GCTTCCATTGTTGCTGCTAC+TGG | + | chr1_2:44131849-44131868 | Msa0071840:CDS | 50.0% | |
| GTTGCCAGTAGCAGCAACAA+TGG | - | chr1_2:44131856-44131875 | None:intergenic | 50.0% | |
| GCTGCTACTGGCAACATCAT+TGG | + | chr1_2:44131861-44131880 | Msa0071840:CDS | 50.0% | |
| TCTGGTCATCGTCAAAGACG+GGG | - | chr1_2:44132739-44132758 | None:intergenic | 50.0% | |
| TTGGGATAAGCCTATCGTCC+CGG | + | chr1_2:44132859-44132878 | Msa0071840:CDS | 50.0% | |
| CCAATGCCAAGGTGAAGTCT+TGG | - | chr1_2:44133249-44133268 | None:intergenic | 50.0% | |
| CCAAGACTTCACCTTGGCAT+TGG | + | chr1_2:44133246-44133265 | Msa0071840:CDS | 50.0% | |
| TCCTACTTGTGGACGTGTGA+TGG | + | chr1_2:44133714-44133733 | Msa0071840:CDS | 50.0% | |
| TCCATCACACGTCCACAAGT+AGG | - | chr1_2:44133718-44133737 | None:intergenic | 50.0% | |
| TACTTGTGGACGTGTGATGG+AGG | + | chr1_2:44133717-44133736 | Msa0071840:CDS | 50.0% | |
| TCTGTGGAGCAGCATCATCA+CGG | - | chr1_2:44133771-44133790 | None:intergenic | 50.0% | |
| GATGATGCTGCTCCACAGAA+TGG | + | chr1_2:44133772-44133791 | Msa0071840:CDS | 50.0% | |
| GTGAATCTGAGAGAGGGAAG+AGG | + | chr1_2:44133801-44133820 | Msa0071840:exon | 50.0% | |
| TATCCGGCGGGAGTAACTAG+AGG | - | chr1_2:44131142-44131161 | None:intergenic | 55.0% | |
| AGGCTAGCAGAAAGCAGAGC+TGG | + | chr1_2:44131222-44131241 | Msa0071840:CDS | 55.0% | |
| CAGATGATAACCACGCCTCG+TGG | + | chr1_2:44131471-44131490 | Msa0071840:intron | 55.0% | |
| TGGGCCACTTGGTCTAGTGT+TGG | + | chr1_2:44131753-44131772 | Msa0071840:CDS | 55.0% | |
| TAAGCCTATCGTCCCGGTGT+TGG | + | chr1_2:44132865-44132884 | Msa0071840:CDS | 55.0% | |
| AAGCCTATCGTCCCGGTGTT+GGG | + | chr1_2:44132866-44132885 | Msa0071840:CDS | 55.0% | |
| TCACCTAAAGGGCCCAACAC+CGG | - | chr1_2:44132881-44132900 | None:intergenic | 55.0% | |
| ! | GCGGGAGTAACTAGAGGCGT+AGG | - | chr1_2:44131136-44131155 | None:intergenic | 60.0% |
| ACGCCTCTAGTTACTCCCGC+CGG | + | chr1_2:44131136-44131155 | Msa0071840:intron | 60.0% | |
| TGCACATAGCGTTCGCCACG+AGG | - | chr1_2:44131489-44131508 | None:intergenic | 60.0% | |
| CACCTAAAGGGCCCAACACC+GGG | - | chr1_2:44132880-44132899 | None:intergenic | 60.0% | |
| GTGGAGCAGCATCATCACGG+TGG | - | chr1_2:44133768-44133787 | None:intergenic | 60.0% | |
| ATAGCGTTCGCCACGAGGCG+TGG | - | chr1_2:44131484-44131503 | None:intergenic | 65.0% | |
| ! | GTCCCGGTGTTGGGCCCTTT+AGG | + | chr1_2:44132875-44132894 | Msa0071840:CDS | 65.0% |
| GGGCCCAACACCGGGACGAT+AGG | - | chr1_2:44132872-44132891 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 44130305 | 44134074 | 44130305 | ID=Msa0071840;Name=Msa0071840 |
| chr1_2 | mRNA | 44130305 | 44134074 | 44130305 | ID=Msa0071840-mRNA-1;Parent=Msa0071840;Name=Msa0071840-mRNA-1;_AED=0.04;_eAED=0.04;_QI=54|0.83|0.85|1|1|1|7|270|651 |
| chr1_2 | exon | 44130305 | 44130508 | 44130305 | ID=Msa0071840-mRNA-1:exon:13295;Parent=Msa0071840-mRNA-1 |
| chr1_2 | exon | 44131219 | 44131287 | 44131219 | ID=Msa0071840-mRNA-1:exon:13296;Parent=Msa0071840-mRNA-1 |
| chr1_2 | exon | 44131474 | 44131889 | 44131474 | ID=Msa0071840-mRNA-1:exon:13297;Parent=Msa0071840-mRNA-1 |
| chr1_2 | exon | 44132153 | 44132256 | 44132153 | ID=Msa0071840-mRNA-1:exon:13298;Parent=Msa0071840-mRNA-1 |
| chr1_2 | exon | 44132352 | 44132485 | 44132352 | ID=Msa0071840-mRNA-1:exon:13299;Parent=Msa0071840-mRNA-1 |
| chr1_2 | exon | 44132572 | 44133042 | 44132572 | ID=Msa0071840-mRNA-1:exon:13300;Parent=Msa0071840-mRNA-1 |
| chr1_2 | exon | 44133193 | 44134074 | 44133193 | ID=Msa0071840-mRNA-1:exon:13301;Parent=Msa0071840-mRNA-1 |
| chr1_2 | five_prime_UTR | 44130305 | 44130358 | 44130305 | ID=Msa0071840-mRNA-1:five_prime_utr;Parent=Msa0071840-mRNA-1 |
| chr1_2 | CDS | 44130359 | 44130508 | 44130359 | ID=Msa0071840-mRNA-1:cds;Parent=Msa0071840-mRNA-1 |
| chr1_2 | CDS | 44131219 | 44131287 | 44131219 | ID=Msa0071840-mRNA-1:cds;Parent=Msa0071840-mRNA-1 |
| chr1_2 | CDS | 44131474 | 44131889 | 44131474 | ID=Msa0071840-mRNA-1:cds;Parent=Msa0071840-mRNA-1 |
| chr1_2 | CDS | 44132153 | 44132256 | 44132153 | ID=Msa0071840-mRNA-1:cds;Parent=Msa0071840-mRNA-1 |
| chr1_2 | CDS | 44132352 | 44132485 | 44132352 | ID=Msa0071840-mRNA-1:cds;Parent=Msa0071840-mRNA-1 |
| chr1_2 | CDS | 44132572 | 44133042 | 44132572 | ID=Msa0071840-mRNA-1:cds;Parent=Msa0071840-mRNA-1 |
| chr1_2 | CDS | 44133193 | 44133804 | 44133193 | ID=Msa0071840-mRNA-1:cds;Parent=Msa0071840-mRNA-1 |
| chr1_2 | three_prime_UTR | 44133805 | 44134074 | 44133805 | ID=Msa0071840-mRNA-1:three_prime_utr;Parent=Msa0071840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
