AlfalfaGEDB | Msa0071840

M. sativa cultivar zhongmu-4 / Msa0071840

KEGG: -
GO: -
PFAM: PF14576.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0071840	XP_003590781.1	93.558	652	34	4	1	650	1	646	0.0	1234

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0071840	sp\|Q9SS87\|SEOB_ARATH	26.308	707	422	25	16	640	39	728	1.95e-49	187

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0071840	A8C978	93.558	652	34	4	1	650	1	646	0.0	1234

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0009780	Msa0071840	0.800176	1.629169e-48	-8.615850e-47
Msa0015150	Msa0071840	0.907413	5.208020e-81	-8.615850e-47
Msa0015570	Msa0071840	0.801380	9.252632e-49	-8.615850e-47
Msa0029960	Msa0071840	0.884470	1.865992e-71	-8.615850e-47
Msa0029970	Msa0071840	0.800031	1.744131e-48	-8.615850e-47
Msa0029990	Msa0071840	0.989279	1.908412e-177	-8.615850e-47
Msa0064120	Msa0071840	0.885062	1.123482e-71	-8.615850e-47
Msa0071840	Msa0071850	0.840397	8.913293e-58	-8.615850e-47
Msa0071840	Msa0071860	0.825335	4.958574e-54	-8.615850e-47
Msa0071840	Msa0072520	0.806738	7.109427e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0071840	MtrunA17_Chr1g0187001	93.558	652	34	4	1	650	1	646	0.0	1234
Msa0071840	MtrunA17_Chr1g0186981	59.084	655	250	10	2	648	24	668	0.0	782
Msa0071840	MtrunA17_Chr1g0186991	50.840	655	292	11	7	643	27	669	0.0	662
Msa0071840	MtrunA17_Chr1g0165791	47.120	677	305	16	2	640	16	677	0.0	578
Msa0071840	MtrunA17_Chr1g0186841	32.314	687	397	20	3	650	13	670	1.15e-101	324
Msa0071840	MtrunA17_Chr1g0186851	31.148	671	397	18	11	643	20	663	1.49e-99	318
Msa0071840	MtrunA17_Chr1g0186861	31.390	669	394	16	11	640	20	662	8.17e-94	303
Msa0071840	MtrunA17_Chr1g0187041	31.204	673	396	20	11	643	20	665	4.59e-93	301
Msa0071840	MtrunA17_Chr1g0186911	32.253	586	352	14	74	640	1	560	2.37e-83	273
Msa0071840	MtrunA17_Chr7g0226571	26.345	725	427	25	3	644	14	714	4.17e-52	191

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0071840	AT3G01680.1	26.308	707	422	25	16	640	39	728	1.99e-50	187
Msa0071840	AT3G01670.1	24.444	630	353	26	87	639	237	820	9.20e-33	135
Msa0071840	AT3G01670.2	24.444	630	353	26	87	639	261	844	9.62e-33	135

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Find 129 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTAATCAAATCACAAAT+AGG	0.346211	1_2:+44132220	Msa0071840:CDS
AAAGGCATGAAACTATCTTA+AGG	0.378342	1_2:+44133278	Msa0071840:CDS
AACAGCTGAAAACCTATTCA+TGG	0.408837	1_2:+44131532	Msa0071840:CDS
AACCATCTTGTTTCCTAAAA+GGG	0.413161	1_2:-44132955	None:intergenic
AACTCCACCAAATCTGTGAC+AGG	0.502153	1_2:-44131699	None:intergenic
AAGAAATCTATAATATCTTT+AGG	0.277385	1_2:-44132396	None:intergenic
AAGAATCAAATCTGGTCTTC+TGG	0.333101	1_2:-44132754	None:intergenic
AAGCCTATCGTCCCGGTGTT+GGG	0.368586	1_2:+44132866	Msa0071840:CDS
AAGCTTAACATTGTAGCCTT+TGG	0.355728	1_2:-44133485	None:intergenic
AAGCTTCTGATCCAACGCAA+TGG	0.610030	1_2:+44132420	Msa0071840:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAATATGTCATTGTCCAA+TGG	+	chr1_2:44130353-44130372	Msa0071840:exon	30.0%
TTCTGTCCAATGTTATACTT+AGG	+	chr1_2:44130486-44130505	Msa0071840:CDS	30.0%
TCTGTCCAATGTTATACTTA+GGG	+	chr1_2:44130487-44130506	Msa0071840:CDS	30.0%
GTTTACCCTAAGTATAACAT+TGG	-	chr1_2:44130495-44130514	None:intergenic	30.0%
TATGAAACACAGACAATCTT+TGG	-	chr1_2:44130720-44130739	None:intergenic	30.0%
ATATCAGTACATTGAGAAAG+TGG	-	chr1_2:44130785-44130804	None:intergenic	30.0%
CATAGGCTTGAAATAAACAA+GGG	-	chr1_2:44131029-44131048	None:intergenic	30.0%
ACATAGGCTTGAAATAAACA+AGG	-	chr1_2:44131030-44131049	None:intergenic	30.0%
TCTTGCCAGGTTAATTATTA+TGG	+	chr1_2:44131279-44131298	Msa0071840:intron	30.0%
TTATCCAATAAACAGCAACA+GGG	-	chr1_2:44131827-44131846	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	44130305	44134074	44130305	ID=Msa0071840;Name=Msa0071840
chr1_2	mRNA	44130305	44134074	44130305	ID=Msa0071840-mRNA-1;Parent=Msa0071840;Name=Msa0071840-mRNA-1;_AED=0.04;_eAED=0.04;_QI=54\|0.83\|0.85\|1\|1\|1\|7\|270\|651
chr1_2	exon	44130305	44130508	44130305	ID=Msa0071840-mRNA-1:exon:13295;Parent=Msa0071840-mRNA-1
chr1_2	exon	44131219	44131287	44131219	ID=Msa0071840-mRNA-1:exon:13296;Parent=Msa0071840-mRNA-1
chr1_2	exon	44131474	44131889	44131474	ID=Msa0071840-mRNA-1:exon:13297;Parent=Msa0071840-mRNA-1
chr1_2	exon	44132153	44132256	44132153	ID=Msa0071840-mRNA-1:exon:13298;Parent=Msa0071840-mRNA-1
chr1_2	exon	44132352	44132485	44132352	ID=Msa0071840-mRNA-1:exon:13299;Parent=Msa0071840-mRNA-1
chr1_2	exon	44132572	44133042	44132572	ID=Msa0071840-mRNA-1:exon:13300;Parent=Msa0071840-mRNA-1
chr1_2	exon	44133193	44134074	44133193	ID=Msa0071840-mRNA-1:exon:13301;Parent=Msa0071840-mRNA-1
chr1_2	five_prime_UTR	44130305	44130358	44130305	ID=Msa0071840-mRNA-1:five_prime_utr;Parent=Msa0071840-mRNA-1
chr1_2	CDS	44130359	44130508	44130359	ID=Msa0071840-mRNA-1:cds;Parent=Msa0071840-mRNA-1
chr1_2	CDS	44131219	44131287	44131219	ID=Msa0071840-mRNA-1:cds;Parent=Msa0071840-mRNA-1
chr1_2	CDS	44131474	44131889	44131474	ID=Msa0071840-mRNA-1:cds;Parent=Msa0071840-mRNA-1
chr1_2	CDS	44132153	44132256	44132153	ID=Msa0071840-mRNA-1:cds;Parent=Msa0071840-mRNA-1
chr1_2	CDS	44132352	44132485	44132352	ID=Msa0071840-mRNA-1:cds;Parent=Msa0071840-mRNA-1
chr1_2	CDS	44132572	44133042	44132572	ID=Msa0071840-mRNA-1:cds;Parent=Msa0071840-mRNA-1
chr1_2	CDS	44133193	44133804	44133193	ID=Msa0071840-mRNA-1:cds;Parent=Msa0071840-mRNA-1
chr1_2	three_prime_UTR	44133805	44134074	44133805	ID=Msa0071840-mRNA-1:three_prime_utr;Parent=Msa0071840-mRNA-1

Gene Sequence

>Msa0071840

ATGTCATTGTCCAATGGAACTAAGCTGCCAAACCCATTTGATCTGGATGAGTCTCAAATCCTGGATAAAGTTTATCTGACTCACCTCCATGATGATGACAAGTGTGATAAAGATGTCCTTTTCCACATTCTGTCCAATGTTATACTTAGGACAAGGCTAGCAGAAAGCAGAGCTGGTTTCGAGCCAGAATTTCGCACAATGAAGCTGATTTCTTGCCAGATGATAACCACGCCTCGTGGCGAACGCTATGTGCATCAAACAACAATGTGGATACTTCAACAGCTGAAAACCTATTCATGGGATGCAAAAGCACTTGTAGCCCTAGCTGCTTTCACTTTGGAATATGGAAATCTTTTGTACCTCACTGAGACTTCAACCTCATCAGATCAACTTGTTAACTCTTTGAAAACCCTGAATCAAATTCAAAACAGAAAGATCACTGTCCCTGTCACAGATTTGGTGGAGTTGATAATGGAAGTGCTTCTGCATATTCATGAGTGGGCCACTTGGTCTAGTGTTGGTTATGACACTCTTGATGTTCCTTCTTTGTCTGATGCATTGCAAGTTATCCCTGTTGCTGTTTATTGGATAATTGCTTCCATTGTTGCTGCTACTGGCAACATCATTGGTGTATCGGACTATACACTATCAGATTTTAAAGACAAACTTAATTTTGTTGATTCTAAGTTGAAGGAACATCTGAAACTAATCAAATCACAAATAGGTGACACACTTGGTGATTCTGTTGAAGAATACTTGAAGCGCAAGAAAGCAATTTCCAATCCTAAAGATATTATAGATTTCTTGAAGCTTCTGATCCAACGCAATGGAGATAATCTCCTAATATATGATGGCACCACCAAAAACAAAACGGATTTAGAAGTCTTCAAAGACAAATATGTGCTGTTGTTCATTTCAAGCCTCAACAAAGTTGACGATGAAATTCTGCTGTTAAACTCTATCCATGACAGATTGCAGGACAATCCACAAGAAGCCATAAAAGGTTACAAAAAAGAGGATTTCAAGATTTTGTGGATCCCCGTCTTTGACGATGACCAGAAGACCAGATTTGATTCTTTGAAGAATAAGATCAGATTTTATGCAGTGGATTACTCTTCTGAGTTACCTGGCATTGGACTCATAAGAGAGCATTTGAACTTTTGGGATAAGCCTATCGTCCCGGTGTTGGGCCCTTTAGGTGAAATAATGAATGATGATGCAATGGACTTGATTTTTCAATGGGGGATAGATGCACTCCCTTTTAGGAAACAAGATGGTTATGATCTTACTCAAAAATGGAAGTGGTTTTGGGATGTAACAAAGAGAGTGAATCTTGGAATACAGGTGAAAGGAGACAGATACATATTCATCTATGGAGGCAGTGACAAAAAATGGATCCAAGACTTCACCTTGGCATTGGAGAAAACAAAAAGGCATGAAACTATCTTAAGGGCAGATGCTATAATAGAACACTATCACTTGGGAAAAGACGACCCTAAGATCGTTCCTCGTTTTTGGATTGAAATAGAAAACAAGAGACTCAAGAAACACCAAGATGCTATAGACTGTGAGATTCAAGATATTGTGAAGAGTTTGCTTTGTCTCAAACAAGATCCACAAGGTTGGGTTATTCTCACCAAAGGCTACAATGTTAAGCTTTTAGGGCATGGTGAGCCTATGTATCAAACTTTGGCTGATTTTGATGTATGGAAAGATAGAGTGCTACAAAAAGAAGGATTTGATATTGCATTCAAAGAGTATTATGAGACTAAGGTTAAAGATACATATGCTAAGCAACCATGTGAAATGATCAATGTTGATAATAATATCAATGGAAATGTTATAGCAACTATATCATGCCCAAATCCTACTTGTGGACGTGTGATGGAGGTGACTTCTGTTAACTACAAGTGTTGCCACCGTGATGATGCTGCTCCACAGAATGGCAAGAAGTGA

Protein sequence

>Msa0071840

MSLSNGTKLPNPFDLDESQILDKVYLTHLHDDDKCDKDVLFHILSNVILRTRLAESRAGFEPEFRTMKLISCQMITTPRGERYVHQTTMWILQQLKTYSWDAKALVALAAFTLEYGNLLYLTETSTSSDQLVNSLKTLNQIQNRKITVPVTDLVELIMEVLLHIHEWATWSSVGYDTLDVPSLSDALQVIPVAVYWIIASIVAATGNIIGVSDYTLSDFKDKLNFVDSKLKEHLKLIKSQIGDTLGDSVEEYLKRKKAISNPKDIIDFLKLLIQRNGDNLLIYDGTTKNKTDLEVFKDKYVLLFISSLNKVDDEILLLNSIHDRLQDNPQEAIKGYKKEDFKILWIPVFDDDQKTRFDSLKNKIRFYAVDYSSELPGIGLIREHLNFWDKPIVPVLGPLGEIMNDDAMDLIFQWGIDALPFRKQDGYDLTQKWKWFWDVTKRVNLGIQVKGDRYIFIYGGSDKKWIQDFTLALEKTKRHETILRADAIIEHYHLGKDDPKIVPRFWIEIENKRLKKHQDAIDCEIQDIVKSLLCLKQDPQGWVILTKGYNVKLLGHGEPMYQTLADFDVWKDRVLQKEGFDIAFKEYYETKVKDTYAKQPCEMINVDNNINGNVIATISCPNPTCGRVMEVTSVNYKCCHRDDAAPQNGKK*