AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0178720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178720 MtrunA17_Chr1g0208531 98.929 560 6 0 1 560 1 560 0.0 1140
Msa0178720 MtrunA17_Chr2g0304631 46.567 466 246 3 66 529 57 521 7.49e-139 412
Msa0178720 MtrunA17_Chr3g0137351 42.191 493 281 4 62 552 53 543 9.38e-133 399
Msa0178720 MtrunA17_Chr4g0065021 40.500 200 114 1 323 522 1 195 6.65e-46 160
Msa0178720 MtrunA17_Chr4g0065031 33.106 293 183 5 25 314 32 314 6.60e-42 153
Msa0178720 MtrunA17_Chr2g0329621 26.871 521 321 16 55 544 20 511 4.34e-40 152
Msa0178720 MtrunA17_Chr5g0401081 20.645 465 326 12 79 522 42 484 4.37e-16 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178720 AT1G71110.1 60.000 530 198 6 9 529 1 525 0.0 648
Msa0178720 AT2G12400.1 42.917 480 271 3 52 529 46 524 2.58e-131 394
Msa0178720 AT2G25270.1 38.104 538 320 5 14 538 3 540 2.81e-129 389
Msa0178720 AT1G80540.3 36.344 465 287 6 71 527 18 481 3.44e-95 299
Msa0178720 AT1G80540.1 36.344 465 287 6 71 527 64 527 9.41e-95 300
Msa0178720 AT1G80540.2 35.121 373 238 4 159 527 2 374 5.82e-73 238
Msa0178720 AT5G67550.1 21.830 481 335 14 76 534 35 496 9.86e-23 102

Find 152 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTATCTGGTTGACGTTTA+TGG 0.177193 1_4:-66121902 None:intergenic
AGCACAAAAGTGAAGAAAAT+TGG 0.182572 1_4:+66119653 Msa0178720:five_prime_UTR
TTCTGCTTTGCCTTGTTCTA+TGG 0.194171 1_4:+66123902 Msa0178720:CDS
ATAATCCAAAACATTATTAT+TGG 0.225525 1_4:+66119405 Msa0178720:five_prime_UTR
CACAAACACTTCTCCCCTTT+GGG 0.225734 1_4:-66123944 None:intergenic
GTTTCATTCTTGCCGTCTTA+TGG 0.256105 1_4:+66121059 Msa0178720:CDS
GTTGACAATATTTGCAATAT+TGG 0.267190 1_4:-66122898 None:intergenic
ACTGCACTCTATATACTAAA+AGG 0.268913 1_4:+66124110 Msa0178720:three_prime_UTR
ACTCATTTATATATCTATAT+TGG 0.270270 1_4:-66124248 None:intergenic
ATATTTCAGATCGGCATTAT+TGG 0.275242 1_4:+66120236 Msa0178720:CDS
CTCTTATTCTGGCGGCAAAT+AGG 0.276223 1_4:+66120161 Msa0178720:CDS
GTCTTATGGTTTGTCTCATT+TGG 0.281337 1_4:+66121073 Msa0178720:CDS
GTCCTACATTAATGATATTA+AGG 0.293341 1_4:-66123858 None:intergenic
TGTTATCACTGGATGGTTAC+TGG 0.300691 1_4:+66122435 Msa0178720:CDS
ATATTAAGGTAATGCTTTAA+TGG 0.308224 1_4:-66123844 None:intergenic
AATTCAGCTTTATCTTCAAC+TGG 0.310962 1_4:+66119804 Msa0178720:CDS
TATTTCAGATCGGCATTATT+GGG 0.318265 1_4:+66120237 Msa0178720:CDS
CGTGTTGTTCACTTTAATTT+TGG 0.335918 1_4:-66119429 None:intergenic
AGGTGATAATACTCTTATTC+TGG 0.339822 1_4:+66120150 Msa0178720:CDS
TTGGTCCAATAATAATGTTT+TGG 0.362968 1_4:-66119410 None:intergenic
TCACAAACACTTCTCCCCTT+TGG 0.370346 1_4:-66123945 None:intergenic
GCGCACGGCCTTGTTTGTTA+TGG 0.371299 1_4:+66122131 Msa0178720:CDS
TCACCTAGTGGCCCTGGTGC+TGG 0.373820 1_4:-66120133 None:intergenic
TTCTGATACTTGCATGGCTA+TGG 0.374645 1_4:+66122767 Msa0178720:CDS
CTCTTGGCTCTAACTGGACT+AGG 0.381640 1_4:+66122168 Msa0178720:CDS
CACCACATCAAGTTTATCAT+AGG 0.382134 1_4:+66119837 Msa0178720:CDS
TTGGGTCATAGAGTCTAAAA+TGG 0.387138 1_4:+66119672 Msa0178720:five_prime_UTR
ATGAAGGCTCATTCCTTCAA+TGG 0.388869 1_4:+66119732 Msa0178720:CDS
GGATGTATTCTCCTTTCTGT+TGG 0.395056 1_4:+66121766 Msa0178720:CDS
GCTAACTGCAAGTAAATCTC+TGG 0.399430 1_4:-66123706 None:intergenic
ATGGTTTGTCTCATTTGGCT+TGG 0.401760 1_4:+66121078 Msa0178720:CDS
TGAGCCTTCATTGTGGAATC+TGG 0.402599 1_4:-66119720 None:intergenic
TATACTTCACTGCCTGCATT+TGG 0.411119 1_4:-66124036 None:intergenic
TCGAAGAAAATCAGGTCTAT+TGG 0.415895 1_4:-66120185 None:intergenic
TGAAATCCTCGAAGAAAATC+AGG 0.422490 1_4:-66120193 None:intergenic
GCACAAAAGTGAAGAAAATT+GGG 0.425340 1_4:+66119654 Msa0178720:five_prime_UTR
CATCAGATGGAAGAAGTATC+TGG 0.429382 1_4:-66121915 None:intergenic
TAAGTTTCACGGCGAGGCCT+TGG 0.429494 1_4:+66121795 Msa0178720:CDS
TTCATCTGCCAATGCTTCAA+TGG 0.432553 1_4:+66123061 Msa0178720:CDS
TATTCTCCTTTCTGTTGGGC+AGG 0.443697 1_4:+66121771 Msa0178720:CDS
GATGTATTCTCCTTTCTGTT+GGG 0.445649 1_4:+66121767 Msa0178720:CDS
GGATAGCATAGTGGCGGCAT+TGG 0.448863 1_4:-66122993 None:intergenic
TGAAGGCTCATTCCTTCAAT+GGG 0.450995 1_4:+66119733 Msa0178720:CDS
TGTATGCGAGGTATCTGAAT+CGG 0.454253 1_4:+66123654 Msa0178720:CDS
ACGGCCTTGTTTGTTATGGC+AGG 0.454318 1_4:+66122135 Msa0178720:CDS
TTCATCGTTATCACGGTGGT+TGG 0.455519 1_4:+66120212 Msa0178720:CDS
GCAATGCTAAATTTGTGCTC+TGG 0.457671 1_4:-66124014 None:intergenic
ACTTCTTCCATCTGATGTCC+TGG 0.459835 1_4:+66121921 Msa0178720:CDS
GGAGGAAGAGGAGTGAATAT+AGG 0.462519 1_4:+66120079 Msa0178720:intron
TGATTCATCTATGCTGTGGA+TGG 0.465197 1_4:+66121107 Msa0178720:CDS
GCAACCACATTCATTCTTTG+CGG 0.465286 1_4:+66122460 Msa0178720:CDS
TCGGCAGTCCTGTCTCTCCT+TGG 0.466551 1_4:+66122284 Msa0178720:intron
GTATTTGCACTACAGTTGGC+AGG 0.466719 1_4:+66123677 Msa0178720:CDS
TCATCGTTATCACGGTGGTT+GGG 0.467508 1_4:+66120213 Msa0178720:CDS
TTCTCGAAATTGATTGTCAA+AGG 0.468444 1_4:-66123015 None:intergenic
GAGGAGTGAATATAGGTTCA+TGG 0.470463 1_4:+66120086 Msa0178720:CDS
CTTGCATGGCTATGGGAGAA+TGG 0.470490 1_4:+66122775 Msa0178720:CDS
ACACAAGTGGCTCCAGCACC+AGG 0.470901 1_4:+66120121 Msa0178720:CDS
ACAAATCCTTTGTGAACGAT+TGG 0.470926 1_4:-66121155 None:intergenic
TTTGTCAGGGATGCATTCAC+AGG 0.471664 1_4:+66123799 Msa0178720:CDS
GTTGCCAGATTCCACAATGA+AGG 0.472559 1_4:+66119716 Msa0178720:exon
AAACTTCTTGATTTGTACAT+TGG 0.474575 1_4:-66123040 None:intergenic
GTTGATATCCAAGGAGAGAC+AGG 0.479405 1_4:-66122292 None:intergenic
CTGTTATATTTGCAGTCAGT+TGG 0.479934 1_4:+66121019 Msa0178720:intron
GAGTGCAGTAAAACAATAGT+AGG 0.480887 1_4:-66124096 None:intergenic
AAATAATACCATTGAAGCAT+TGG 0.484010 1_4:-66123069 None:intergenic
GCGGCAGCTTCGCTCCACCT+TGG 0.484210 1_4:-66124139 None:intergenic
TTGCAGTCAGTTGGATTCAC+CGG 0.485005 1_4:+66121028 Msa0178720:intron
TAGCATAGTGGCGGCATTGG+AGG 0.485779 1_4:-66122990 None:intergenic
GGACTTGGCCTCATTTCAGT+TGG 0.492225 1_4:+66123877 Msa0178720:CDS
GTTGGATTCACCGGTGCCAC+GGG 0.493182 1_4:+66121037 Msa0178720:CDS
TTCACTTTCTTAGATCATAT+AGG 0.495375 1_4:+66119604 Msa0178720:five_prime_UTR
TTGCATGGCTATGGGAGAAT+GGG 0.496761 1_4:+66122776 Msa0178720:CDS
ATTCATCTATGCTGTGGATG+GGG 0.500948 1_4:+66121109 Msa0178720:CDS
TATAAAAGTCACATGGGTGT+GGG 0.504963 1_4:-66119543 None:intergenic
AAGAATGAAACCCGTGGCAC+CGG 0.505503 1_4:-66121047 None:intergenic
GTTGGGCAGGATAAGTTTCA+CGG 0.506973 1_4:+66121784 Msa0178720:CDS
AGTTGGATTCACCGGTGCCA+CGG 0.507428 1_4:+66121036 Msa0178720:CDS
TACCTTAATATCATTAATGT+AGG 0.508015 1_4:+66123856 Msa0178720:CDS
GTATTATCACCTAGTGGCCC+TGG 0.510784 1_4:-66120139 None:intergenic
TCTGATACTTGCATGGCTAT+GGG 0.511515 1_4:+66122768 Msa0178720:CDS
TTATAAAAGTCACATGGGTG+TGG 0.512834 1_4:-66119544 None:intergenic
TACAATTTCTGATACTTGCA+TGG 0.513443 1_4:+66122761 Msa0178720:CDS
ATGCTAAATTTGTGCTCTGG+TGG 0.516026 1_4:-66124011 None:intergenic
TTCTGAAGGCTAAGTAAAAG+TGG 0.518057 1_4:-66123769 None:intergenic
AATTTAGCATTGCCAAATGC+AGG 0.518871 1_4:+66124024 Msa0178720:CDS
AATATCATTAATGTAGGACT+TGG 0.522457 1_4:+66123862 Msa0178720:CDS
GCTCCAGCACCAGGGCCACT+AGG 0.526747 1_4:+66120130 Msa0178720:CDS
TCTCGAAATTGATTGTCAAA+GGG 0.529864 1_4:-66123014 None:intergenic
GCAGATTTGTTATCACTGGA+TGG 0.536855 1_4:+66122428 Msa0178720:intron
TCGGGTATTTGCACTACAGT+TGG 0.542192 1_4:+66123673 Msa0178720:CDS
GTATGCGAGGTATCTGAATC+GGG 0.545080 1_4:+66123655 Msa0178720:CDS
CTAACTGCAAGTAAATCTCT+GGG 0.545916 1_4:-66123705 None:intergenic
ACTTATCCTGCCCAACAGAA+AGG 0.546266 1_4:-66121777 None:intergenic
CTTCCATCTGATGTCCTGGA+TGG 0.547833 1_4:+66121925 Msa0178720:CDS
GATTCATCTATGCTGTGGAT+GGG 0.549596 1_4:+66121108 Msa0178720:CDS
ACAAACACTTCTCCCCTTTG+GGG 0.558946 1_4:-66123943 None:intergenic
GCAAACGTAAATGCAACAAA+GGG 0.559605 1_4:+66122939 Msa0178720:CDS
AATGCAACAAAGGGTCATCC+AGG 0.560684 1_4:+66122948 Msa0178720:CDS
TTCATCTATGCTGTGGATGG+GGG 0.565637 1_4:+66121110 Msa0178720:CDS
TTGCTATTGTCTATGAACTC+AGG 0.569871 1_4:-66124161 None:intergenic
TGCAAACGTAAATGCAACAA+AGG 0.571083 1_4:+66122938 Msa0178720:CDS
ATACCATCCAGGACATCAGA+TGG 0.573820 1_4:-66121928 None:intergenic
CGAGGATTTCATCGTTATCA+CGG 0.574421 1_4:+66120205 Msa0178720:CDS
TGACAAAATTGCAATTCTGA+AGG 0.579139 1_4:-66123783 None:intergenic
CATGGCTATGGGAGAATGGG+TGG 0.581284 1_4:+66122779 Msa0178720:CDS
GCAGAACACCAACTGAAATG+AGG 0.592050 1_4:-66123885 None:intergenic
TTCTTTGATCAACGCATGGA+AGG 0.594653 1_4:-66122836 None:intergenic
TGGTATTGATAAGTTGAATG+TGG 0.597976 1_4:+66121945 Msa0178720:CDS
AAAGTCTTACGATGCAGCAA+AGG 0.601124 1_4:-66121200 None:intergenic
CTTGTGATTCATCTATGCTG+TGG 0.603282 1_4:+66121103 Msa0178720:CDS
TCAACTTATCAATACCATCC+AGG 0.603553 1_4:-66121939 None:intergenic
TAGAAATTATAAAAGTCACA+TGG 0.608328 1_4:-66119550 None:intergenic
ATTCAGCTTTATCTTCAACT+GGG 0.608828 1_4:+66119805 Msa0178720:CDS
TTAAGGTAATGCTTTAATGG+AGG 0.616479 1_4:-66123841 None:intergenic
GCAAAATGAAGTTACACAAG+TGG 0.620200 1_4:+66120108 Msa0178720:CDS
CATAGAGTATCCATAGAACA+AGG 0.621481 1_4:-66123912 None:intergenic
TTGTCAAAGGGATAGCATAG+TGG 0.622154 1_4:-66123002 None:intergenic
TATTTGCACTACAGTTGGCA+GGG 0.623000 1_4:+66123678 Msa0178720:CDS
TTGGGAGAATTATGTATGCG+AGG 0.624037 1_4:+66123642 Msa0178720:CDS
ATAAAAGTCACATGGGTGTG+GGG 0.624614 1_4:-66119542 None:intergenic
TGATAATACTCTTATTCTGG+CGG 0.626823 1_4:+66120153 Msa0178720:CDS
AGAAATTATAAAAGTCACAT+GGG 0.627293 1_4:-66119549 None:intergenic
ATACTAAAAGGAAGAAACCA+AGG 0.631973 1_4:+66124122 Msa0178720:three_prime_UTR
GGGATTAACATAAAGGACAA+AGG 0.636198 1_4:+66121130 Msa0178720:CDS
AACCTATGATAAACTTGATG+TGG 0.636454 1_4:-66119839 None:intergenic
CAAACACTTCTCCCCTTTGG+GGG 0.639045 1_4:-66123942 None:intergenic
CTATTGTCTATGAACTCAGG+CGG 0.640227 1_4:-66124158 None:intergenic
TACTCCTGCCATAACAAACA+AGG 0.640964 1_4:-66122139 None:intergenic
GTGGTTCTTTGATCAACGCA+TGG 0.641600 1_4:-66122840 None:intergenic
TGATCTAAGAAAGTGAAGAA+CGG 0.642662 1_4:-66119598 None:intergenic
ATGAGTATTTACATATACAC+GGG 0.643174 1_4:-66124206 None:intergenic
TGATTGCATGTTGATATCCA+AGG 0.647031 1_4:-66122301 None:intergenic
AAAGTCACATGGGTGTGGGG+TGG 0.649539 1_4:-66119539 None:intergenic
AAATGAGACAAACCATAAGA+CGG 0.652641 1_4:-66121071 None:intergenic
GTGGTTGGGATATTTCAGAT+CGG 0.653513 1_4:+66120227 Msa0178720:CDS
GCAGACTCTGAGAAATGTCA+CGG 0.656398 1_4:+66121858 Msa0178720:CDS
TGTGGAACTAAATACTGCAG+CGG 0.659585 1_4:+66121963 Msa0178720:CDS
CTAAGAGCAGATTCTCTGTG+TGG 0.660144 1_4:-66122807 None:intergenic
GCAGGATAAGTTTCACGGCG+AGG 0.664395 1_4:+66121789 Msa0178720:CDS
TATTGCAAATATTGTCAACA+CGG 0.666087 1_4:+66122902 Msa0178720:CDS
TCAAAGGGATAGCATAGTGG+CGG 0.668642 1_4:-66122999 None:intergenic
GATGAGTATTTACATATACA+CGG 0.673410 1_4:-66124207 None:intergenic
GAAGGAATGAGCCTTCATTG+TGG 0.678202 1_4:-66119727 None:intergenic
CACAAGTGGCTCCAGCACCA+GGG 0.678997 1_4:+66120122 Msa0178720:CDS
AAGGATCCAATCGTTCACAA+AGG 0.682188 1_4:+66121149 Msa0178720:CDS
ATAAGAGTATTATCACCTAG+TGG 0.683571 1_4:-66120145 None:intergenic
GGATTTCATCGTTATCACGG+TGG 0.704106 1_4:+66120208 Msa0178720:CDS
CACTCCGCAAAGAATGAATG+TGG 0.705480 1_4:-66122464 None:intergenic
GACGGCAAGAATGAAACCCG+TGG 0.726515 1_4:-66121053 None:intergenic
CTAAAAGGAAGAAACCAAGG+TGG 0.757613 1_4:+66124125 Msa0178720:three_prime_UTR
TAACTGCAAGTAAATCTCTG+GGG 0.763572 1_4:-66123704 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CCTTTTAATTATTTTATTTT+CGG + chr1_4:66122265-66122284 Msa0178720:intron 10.0%
!! ATTCAAAATTTAAAGATAAT+TGG - chr1_4:66122670-66122689 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+TGG - chr1_4:66121323-66121342 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:66121323-66121342 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:66121323-66121342 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:66121323-66121342 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:66121323-66121342 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:66121323-66121342 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:66121323-66121342 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:66121323-66121342 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:66121323-66121342 None:intergenic 100.0%
!! ATAATCCAAAACATTATTAT+TGG + chr1_4:66119405-66119424 Msa0178720:five_prime_UTR 15.0%
!!! TTTAGATCTTTTAAATCTTA+GGG + chr1_4:66119912-66119931 Msa0178720:intron 15.0%
!! ATATTGGATTTATATGTTAT+AGG + chr1_4:66120485-66120504 Msa0178720:intron 15.0%
!!! ACTTTTTTTGCTTATATTTA+AGG - chr1_4:66120681-66120700 None:intergenic 15.0%
!!! GAATAATCTTCTAATTTTAA+CGG - chr1_4:66122019-66122038 None:intergenic 15.0%
!! CCGAAAATAAAATAATTAAA+AGG - chr1_4:66122268-66122287 None:intergenic 15.0%
!!! TTTTGAATTTTTTGTCTTTA+TGG + chr1_4:66122682-66122701 Msa0178720:intron 15.0%
!! AGCTTGATATATAAAATTAA+GGG - chr1_4:66123099-66123118 None:intergenic 15.0%
!! AAGCTTGATATATAAAATTA+AGG - chr1_4:66123100-66123119 None:intergenic 15.0%
!! AGTAAAAAAAATATCAACAT+AGG + chr1_4:66123515-66123534 Msa0178720:intron 15.0%
!! GTAAAAAAAATATCAACATA+GGG + chr1_4:66123516-66123535 Msa0178720:intron 15.0%
!!! TCATTTTGTTTAAATTTTTC+AGG + chr1_4:66123618-66123637 Msa0178720:intron 15.0%
!! ACTCATTTATATATCTATAT+TGG - chr1_4:66124251-66124270 None:intergenic 15.0%
!! AGAAATTATAAAAGTCACAT+GGG - chr1_4:66119552-66119571 None:intergenic 20.0%
!! TAGAAATTATAAAAGTCACA+TGG - chr1_4:66119553-66119572 None:intergenic 20.0%
!!! GTTTAGATCTTTTAAATCTT+AGG + chr1_4:66119911-66119930 Msa0178720:intron 20.0%
!! GATATTGTTGGATTATTATT+CGG + chr1_4:66120021-66120040 Msa0178720:intron 20.0%
!! ATATTGTTGGATTATTATTC+GGG + chr1_4:66120022-66120041 Msa0178720:intron 20.0%
!! GTATTTAGTCCAAATATTTA+AGG + chr1_4:66120705-66120724 Msa0178720:intron 20.0%
!!! CTTTTTTGCTTATATTTTCA+AGG - chr1_4:66120808-66120827 None:intergenic 20.0%
!! AACATTGAATTGAAGTAAAA+GGG - chr1_4:66122594-66122613 None:intergenic 20.0%
!! AAACATTGAATTGAAGTAAA+AGG - chr1_4:66122595-66122614 None:intergenic 20.0%
!!! TTTTGTCTTTATGGTAAAAA+AGG + chr1_4:66122691-66122710 Msa0178720:intron 20.0%
!! AGAATTAATTTATTCGTATC+AGG - chr1_4:66122734-66122753 None:intergenic 20.0%
!! TGTAATTTATAATGAGTGAT+TGG + chr1_4:66123220-66123239 Msa0178720:intron 20.0%
!!! TAATCTCTAAATTTTGTTCA+TGG + chr1_4:66123556-66123575 Msa0178720:intron 20.0%
!!! TTGTTTAAATTTTTCAGGTT+TGG + chr1_4:66123623-66123642 Msa0178720:intron 20.0%
!!! TGTTTAAATTTTTCAGGTTT+GGG + chr1_4:66123624-66123643 Msa0178720:intron 20.0%
!! ATATTAAGGTAATGCTTTAA+TGG - chr1_4:66123847-66123866 None:intergenic 20.0%
!! TACCTTAATATCATTAATGT+AGG + chr1_4:66123856-66123875 Msa0178720:CDS 20.0%
!!! GCTCTTTATTTTTTCTTTTA+AGG - chr1_4:66123977-66123996 None:intergenic 20.0%
!! TTGGTCCAATAATAATGTTT+TGG - chr1_4:66119413-66119432 None:intergenic 25.0%
! AAAGAACAAAACTAAAAACG+CGG - chr1_4:66119481-66119500 None:intergenic 25.0%
! TTCACTTTCTTAGATCATAT+AGG + chr1_4:66119604-66119623 Msa0178720:five_prime_UTR 25.0%
!! TTATTTGTGATTTTCTGTGA+TGG + chr1_4:66119883-66119902 Msa0178720:intron 25.0%
!! TATTTGTGATTTTCTGTGAT+GGG + chr1_4:66119884-66119903 Msa0178720:intron 25.0%
! CAATATCATAGAGAAATGAA+AGG - chr1_4:66120008-66120027 None:intergenic 25.0%
! TCATTTCTCTATGATATTGT+TGG + chr1_4:66120009-66120028 Msa0178720:intron 25.0%
!!! TTATTTGATTCCACTTTTTC+AGG + chr1_4:66120058-66120077 Msa0178720:intron 25.0%
!!! CATAATCATTTTTCTAGGTT+TGG + chr1_4:66120285-66120304 Msa0178720:intron 25.0%
! TACTTGTGTGATATCTATAT+TGG + chr1_4:66120469-66120488 Msa0178720:intron 25.0%
! ATGTTATAGGAAATGTGATA+TGG + chr1_4:66120498-66120517 Msa0178720:intron 25.0%
! GTATTTAGTCCAAGTATTTA+AGG + chr1_4:66120833-66120852 Msa0178720:intron 25.0%
!! CAGATTTTTATCTTCTTCTT+TGG + chr1_4:66121274-66121293 Msa0178720:intron 25.0%
! TTATATCTATGATGAAAGGA+GGG - chr1_4:66121353-66121372 None:intergenic 25.0%
! TTTATATCTATGATGAAAGG+AGG - chr1_4:66121354-66121373 None:intergenic 25.0%
!! GCTTTTATATCTATGATGAA+AGG - chr1_4:66121357-66121376 None:intergenic 25.0%
! NNNNNTCTATTTACATGTCG+TGG + chr1_4:66121545-66121564 Msa0178720:intron 25.0%
! TTCGTCAGAAATATATATGT+CGG + chr1_4:66121707-66121726 Msa0178720:intron 25.0%
! TTGATTGACAAAAAAATGGA+GGG - chr1_4:66121824-66121843 None:intergenic 25.0%
! ATTGATTGACAAAAAAATGG+AGG - chr1_4:66121825-66121844 None:intergenic 25.0%
! CTGATTGATTGACAAAAAAA+TGG - chr1_4:66121828-66121847 None:intergenic 25.0%
! ACAAAATATGCAGAATTTAG+AGG - chr1_4:66122072-66122091 None:intergenic 25.0%
! CTGAAATCTGTTAGATATAA+TGG - chr1_4:66122516-66122535 None:intergenic 25.0%
!!! TTGAACTGAATTCGTTTTTT+TGG + chr1_4:66122551-66122570 Msa0178720:intron 25.0%
! AATTGAAGTAAAAGGGTAAA+TGG - chr1_4:66122587-66122606 None:intergenic 25.0%
!!! TTCATTTCAGGTTTTGTTAT+GGG - chr1_4:66122626-66122645 None:intergenic 25.0%
!!! TTGAAAAAGTGTTTTGTTTG+TGG - chr1_4:66122862-66122881 None:intergenic 25.0%
! GTTGACAATATTTGCAATAT+TGG - chr1_4:66122901-66122920 None:intergenic 25.0%
! TATTGCAAATATTGTCAACA+CGG + chr1_4:66122902-66122921 Msa0178720:CDS 25.0%
!!! AAACTTCTTGATTTGTACAT+TGG - chr1_4:66123043-66123062 None:intergenic 25.0%
! AAATAATACCATTGAAGCAT+TGG - chr1_4:66123072-66123091 None:intergenic 25.0%
!!! CATTTAAAACATTGACTTGT+TGG + chr1_4:66123381-66123400 Msa0178720:intron 25.0%
! AAATATCAACATAGGGAAAT+TGG + chr1_4:66123523-66123542 Msa0178720:intron 25.0%
!! CTAAATTTTGTTCATGGTTT+CGG + chr1_4:66123562-66123581 Msa0178720:intron 25.0%
! GTCCTACATTAATGATATTA+AGG - chr1_4:66123861-66123880 None:intergenic 25.0%
! AATATCATTAATGTAGGACT+TGG + chr1_4:66123862-66123881 Msa0178720:CDS 25.0%
! ATGAGTATTTACATATACAC+GGG - chr1_4:66124209-66124228 None:intergenic 25.0%
! GATGAGTATTTACATATACA+CGG - chr1_4:66124210-66124229 None:intergenic 25.0%
!! CGTGTTGTTCACTTTAATTT+TGG - chr1_4:66119432-66119451 None:intergenic 30.0%
AAGAACAAAACTAAAAACGC+GGG - chr1_4:66119480-66119499 None:intergenic 30.0%
TGATCTAAGAAAGTGAAGAA+CGG - chr1_4:66119601-66119620 None:intergenic 30.0%
!!! CACTTTTGTGCTTTATTTTG+AGG - chr1_4:66119645-66119664 None:intergenic 30.0%
AGCACAAAAGTGAAGAAAAT+TGG + chr1_4:66119653-66119672 Msa0178720:five_prime_UTR 30.0%
GCACAAAAGTGAAGAAAATT+GGG + chr1_4:66119654-66119673 Msa0178720:five_prime_UTR 30.0%
! AATTCAGCTTTATCTTCAAC+TGG + chr1_4:66119804-66119823 Msa0178720:CDS 30.0%
! ATTCAGCTTTATCTTCAACT+GGG + chr1_4:66119805-66119824 Msa0178720:CDS 30.0%
AACCTATGATAAACTTGATG+TGG - chr1_4:66119842-66119861 None:intergenic 30.0%
! TTAAATCTTAGGGCTTTTGT+TGG + chr1_4:66119922-66119941 Msa0178720:intron 30.0%
!! TTGGATTATTATTCGGGTTT+TGG + chr1_4:66120028-66120047 Msa0178720:intron 30.0%
!! ATAAGAGTATTATCACCTAG+TGG - chr1_4:66120148-66120167 None:intergenic 30.0%
AGGTGATAATACTCTTATTC+TGG + chr1_4:66120150-66120169 Msa0178720:CDS 30.0%
TGATAATACTCTTATTCTGG+CGG + chr1_4:66120153-66120172 Msa0178720:CDS 30.0%
ATATTTCAGATCGGCATTAT+TGG + chr1_4:66120236-66120255 Msa0178720:CDS 30.0%
TATTTCAGATCGGCATTATT+GGG + chr1_4:66120237-66120256 Msa0178720:CDS 30.0%
AGAAAAATGATTATGAGCAG+AGG - chr1_4:66120280-66120299 None:intergenic 30.0%
!! CTGCTCATAATCATTTTTCT+AGG + chr1_4:66120280-66120299 Msa0178720:intron 30.0%
!! ATCATTTTTCTAGGTTTGGA+TGG + chr1_4:66120289-66120308 Msa0178720:intron 30.0%
TTATAGGAAATGTGATATGG+TGG + chr1_4:66120501-66120520 Msa0178720:intron 30.0%
ATGTCAATTATGCAGCAATA+TGG - chr1_4:66120627-66120646 None:intergenic 30.0%
! TCCAAATATTTAAGGCTAGA+GGG + chr1_4:66120713-66120732 Msa0178720:intron 30.0%
AAAGACAGAAAAACAGAGAA+GGG - chr1_4:66120747-66120766 None:intergenic 30.0%
TAAAGACAGAAAAACAGAGA+AGG - chr1_4:66120748-66120767 None:intergenic 30.0%
TAAAGATAGAAAGACAGAGA+AGG - chr1_4:66120875-66120894 None:intergenic 30.0%
AAATGAGACAAACCATAAGA+CGG - chr1_4:66121074-66121093 None:intergenic 30.0%
! CAGCTTTTTATCTTCTACTT+TGG + chr1_4:66121241-66121260 Msa0178720:intron 30.0%
TATATCTATGATGAAAGGAG+GGG - chr1_4:66121352-66121371 None:intergenic 30.0%
! ATCTAATCACTCTGTTTTCA+TGG + chr1_4:66121382-66121401 Msa0178720:intron 30.0%
! ATGGTTAGTTATCACTTATC+AGG + chr1_4:66121401-66121420 Msa0178720:intron 30.0%
TTCTGCTCAAGTTAAATTTC+TGG + chr1_4:66121663-66121682 Msa0178720:intron 30.0%
TTCTGACGAATAAAACATTG+AGG - chr1_4:66121697-66121716 None:intergenic 30.0%
!! TGGTATTGATAAGTTGAATG+TGG + chr1_4:66121945-66121964 Msa0178720:CDS 30.0%
!! GGAATTTTCATCTGTTGTTT+CGG - chr1_4:66121998-66122017 None:intergenic 30.0%
AGTTTAGCATCATACTATGA+TGG - chr1_4:66122096-66122115 None:intergenic 30.0%
!!! CTAAACTCTGCTTATTTTGT+AGG + chr1_4:66122109-66122128 Msa0178720:intron 30.0%
GTTGATCATAACTTCTTGAA+TGG + chr1_4:66122196-66122215 Msa0178720:intron 30.0%
!!! TTTTGCAGATTTGTTATCAC+TGG + chr1_4:66122424-66122443 Msa0178720:intron 30.0%
!!! GTTCATTTCAGGTTTTGTTA+TGG - chr1_4:66122627-66122646 None:intergenic 30.0%
! CAATATAACTGGTTCATTTC+AGG - chr1_4:66122638-66122657 None:intergenic 30.0%
GGATCTCAATTCAATATAAC+TGG - chr1_4:66122649-66122668 None:intergenic 30.0%
TACAATTTCTGATACTTGCA+TGG + chr1_4:66122761-66122780 Msa0178720:CDS 30.0%
TCTCGAAATTGATTGTCAAA+GGG - chr1_4:66123017-66123036 None:intergenic 30.0%
TTCTCGAAATTGATTGTCAA+AGG - chr1_4:66123018-66123037 None:intergenic 30.0%
ATATATCAAGCTTTGCTAGA+TGG + chr1_4:66123107-66123126 Msa0178720:intron 30.0%
! GTGAAAACCCATTTGAATTT+TGG - chr1_4:66123268-66123287 None:intergenic 30.0%
!! CAAGTCAATGTTTTAAATGC+CGG - chr1_4:66123380-66123399 None:intergenic 30.0%
TGTACTATACTTGGTACTAA+AGG + chr1_4:66123430-66123449 Msa0178720:intron 30.0%
! TTTTTACTCAGCTAACTGAT+CGG - chr1_4:66123503-66123522 None:intergenic 30.0%
TGACAAAATTGCAATTCTGA+AGG - chr1_4:66123786-66123805 None:intergenic 30.0%
! TTCAGAATTGCAATTTTGTC+AGG + chr1_4:66123785-66123804 Msa0178720:CDS 30.0%
! TCAGAATTGCAATTTTGTCA+GGG + chr1_4:66123786-66123805 Msa0178720:CDS 30.0%
TTAAGGTAATGCTTTAATGG+AGG - chr1_4:66123844-66123863 None:intergenic 30.0%
ACTGCACTCTATATACTAAA+AGG + chr1_4:66124110-66124129 Msa0178720:three_prime_UTR 30.0%
ATACTAAAAGGAAGAAACCA+AGG + chr1_4:66124122-66124141 Msa0178720:three_prime_UTR 30.0%
TATAAAAGTCACATGGGTGT+GGG - chr1_4:66119546-66119565 None:intergenic 35.0%
TTATAAAAGTCACATGGGTG+TGG - chr1_4:66119547-66119566 None:intergenic 35.0%
TTGGGTCATAGAGTCTAAAA+TGG + chr1_4:66119672-66119691 Msa0178720:five_prime_UTR 35.0%
GAAAAACGAAAACCCATTGA+AGG - chr1_4:66119748-66119767 None:intergenic 35.0%
CACCACATCAAGTTTATCAT+AGG + chr1_4:66119837-66119856 Msa0178720:CDS 35.0%
!!! TTTGATTCCACTTTTTCAGG+AGG + chr1_4:66120061-66120080 Msa0178720:intron 35.0%
GCAAAATGAAGTTACACAAG+TGG + chr1_4:66120108-66120127 Msa0178720:CDS 35.0%
TCGAAGAAAATCAGGTCTAT+TGG - chr1_4:66120188-66120207 None:intergenic 35.0%
! AATAGACCTGATTTTCTTCG+AGG + chr1_4:66120187-66120206 Msa0178720:CDS 35.0%
TGAAATCCTCGAAGAAAATC+AGG - chr1_4:66120196-66120215 None:intergenic 35.0%
ACAAATCTATGACATCATGC+TGG - chr1_4:66120363-66120382 None:intergenic 35.0%
TTCTCTGTGCAATGAAATCA+TGG + chr1_4:66120601-66120620 Msa0178720:intron 35.0%
! TTGCTTATATTTAAGGCCGA+GGG - chr1_4:66120674-66120693 None:intergenic 35.0%
! TTTGCTTATATTTAAGGCCG+AGG - chr1_4:66120675-66120694 None:intergenic 35.0%
! GTCCAAATATTTAAGGCTAG+AGG + chr1_4:66120712-66120731 Msa0178720:intron 35.0%
!! TCCCTCTAGCCTTAAATATT+TGG - chr1_4:66120717-66120736 None:intergenic 35.0%
! TCCAAGTATTTAAGGCTAGA+GGG + chr1_4:66120841-66120860 Msa0178720:intron 35.0%
CTGTTATATTTGCAGTCAGT+TGG + chr1_4:66121019-66121038 Msa0178720:intron 35.0%
! GTCTTATGGTTTGTCTCATT+TGG + chr1_4:66121073-66121092 Msa0178720:CDS 35.0%
GGGATTAACATAAAGGACAA+AGG + chr1_4:66121130-66121149 Msa0178720:CDS 35.0%
ACAAATCCTTTGTGAACGAT+TGG - chr1_4:66121158-66121177 None:intergenic 35.0%
ATATCTATGATGAAAGGAGG+GGG - chr1_4:66121351-66121370 None:intergenic 35.0%
TTTCCATGACTGAATTGCAA+AGG + chr1_4:66121582-66121601 Msa0178720:intron 35.0%
GATGTATTCTCCTTTCTGTT+GGG + chr1_4:66121767-66121786 Msa0178720:CDS 35.0%
!! AAAAAAATGGAGGGTATCCA+AGG - chr1_4:66121815-66121834 None:intergenic 35.0%
! GACGTTTATGGTTTTTGCAA+GGG - chr1_4:66121893-66121912 None:intergenic 35.0%
! TGACGTTTATGGTTTTTGCA+AGG - chr1_4:66121894-66121913 None:intergenic 35.0%
AAGTATCTGGTTGACGTTTA+TGG - chr1_4:66121905-66121924 None:intergenic 35.0%
TCAACTTATCAATACCATCC+AGG - chr1_4:66121942-66121961 None:intergenic 35.0%
TATGCAGAATTTAGAGGTCA+AGG - chr1_4:66122066-66122085 None:intergenic 35.0%
!!! ATTTTTCTCTTGGCTCTAAC+TGG + chr1_4:66122162-66122181 Msa0178720:CDS 35.0%
TGATTGCATGTTGATATCCA+AGG - chr1_4:66122304-66122323 None:intergenic 35.0%
AAAGGATCATTCAGATAGCT+AGG - chr1_4:66122372-66122391 None:intergenic 35.0%
TAAAAGGGTAAATGGCCAAA+GGG - chr1_4:66122579-66122598 None:intergenic 35.0%
TGCAAACGTAAATGCAACAA+AGG + chr1_4:66122938-66122957 Msa0178720:CDS 35.0%
GCAAACGTAAATGCAACAAA+GGG + chr1_4:66122939-66122958 Msa0178720:CDS 35.0%
! CAGGTTTTTACAATCAGTCT+GGG + chr1_4:66122967-66122986 Msa0178720:CDS 35.0%
! CTTTGCTAGATGGTGATTTT+TGG + chr1_4:66123117-66123136 Msa0178720:intron 35.0%
! CACACATACTCAAGTTTGTT+GGG - chr1_4:66123170-66123189 None:intergenic 35.0%
ACACACATACTCAAGTTTGT+TGG - chr1_4:66123171-66123190 None:intergenic 35.0%
! AGTGATTGGTTGATCCAAAT+AGG + chr1_4:66123234-66123253 Msa0178720:intron 35.0%
! GTGATTGGTTGATCCAAATA+GGG + chr1_4:66123235-66123254 Msa0178720:intron 35.0%
CCTTCAGCCAAAATTCAAAT+GGG + chr1_4:66123258-66123277 Msa0178720:intron 35.0%
! GTTTTCACTTGTATTCAACC+AGG + chr1_4:66123280-66123299 Msa0178720:intron 35.0%
!! TCAATGTTTTAAATGCCGGT+AGG - chr1_4:66123376-66123395 None:intergenic 35.0%
TTGACTCAGTGTACTATACT+TGG + chr1_4:66123421-66123440 Msa0178720:intron 35.0%
TAACTGCAAGTAAATCTCTG+GGG - chr1_4:66123707-66123726 None:intergenic 35.0%
CTAACTGCAAGTAAATCTCT+GGG - chr1_4:66123708-66123727 None:intergenic 35.0%
! TTCTGAAGGCTAAGTAAAAG+TGG - chr1_4:66123772-66123791 None:intergenic 35.0%
! CATAGAGTATCCATAGAACA+AGG - chr1_4:66123915-66123934 None:intergenic 35.0%
AATTTAGCATTGCCAAATGC+AGG + chr1_4:66124024-66124043 Msa0178720:CDS 35.0%
GAGTGCAGTAAAACAATAGT+AGG - chr1_4:66124099-66124118 None:intergenic 35.0%
! TTGCTATTGTCTATGAACTC+AGG - chr1_4:66124164-66124183 None:intergenic 35.0%
ATAAAAGTCACATGGGTGTG+GGG - chr1_4:66119545-66119564 None:intergenic 40.0%
ATGAAGGCTCATTCCTTCAA+TGG + chr1_4:66119732-66119751 Msa0178720:CDS 40.0%
TGAAGGCTCATTCCTTCAAT+GGG + chr1_4:66119733-66119752 Msa0178720:CDS 40.0%
!!! GTGATTTTCTGTGATGGGTT+TGG + chr1_4:66119889-66119908 Msa0178720:intron 40.0%
! AATCTTAGGGCTTTTGTTGG+TGG + chr1_4:66119925-66119944 Msa0178720:intron 40.0%
! ATCTTAGGGCTTTTGTTGGT+GGG + chr1_4:66119926-66119945 Msa0178720:intron 40.0%
GAGGAGTGAATATAGGTTCA+TGG + chr1_4:66120086-66120105 Msa0178720:CDS 40.0%
CGAGGATTTCATCGTTATCA+CGG + chr1_4:66120205-66120224 Msa0178720:CDS 40.0%
GTGGTTGGGATATTTCAGAT+CGG + chr1_4:66120227-66120246 Msa0178720:CDS 40.0%
TTATTGGGCTGTAAGTGCTT+TGG + chr1_4:66120252-66120271 Msa0178720:intron 40.0%
AGATCCTTGCTGCATTTAAG+TGG + chr1_4:66120403-66120422 Msa0178720:intron 40.0%
GATCCTTGCTGCATTTAAGT+GGG + chr1_4:66120404-66120423 Msa0178720:intron 40.0%
TTTCCCACTTAAATGCAGCA+AGG - chr1_4:66120410-66120429 None:intergenic 40.0%
TGCTGCATTTAAGTGGGAAA+TGG + chr1_4:66120410-66120429 Msa0178720:intron 40.0%
TGCACAGAGAACAACAATGA+TGG - chr1_4:66120592-66120611 None:intergenic 40.0%
TGAAGATGTACATACTCCCT+CGG + chr1_4:66120655-66120674 Msa0178720:intron 40.0%
! GTCCAAGTATTTAAGGCTAG+AGG + chr1_4:66120840-66120859 Msa0178720:intron 40.0%
!! TCCCTCTAGCCTTAAATACT+TGG - chr1_4:66120845-66120864 None:intergenic 40.0%
TTGTTGTCGAGTGAGAAGAT+TGG + chr1_4:66120976-66120995 Msa0178720:intron 40.0%
GTTTCATTCTTGCCGTCTTA+TGG + chr1_4:66121059-66121078 Msa0178720:CDS 40.0%
! ATGGTTTGTCTCATTTGGCT+TGG + chr1_4:66121078-66121097 Msa0178720:CDS 40.0%
CTTGTGATTCATCTATGCTG+TGG + chr1_4:66121103-66121122 Msa0178720:CDS 40.0%
TGATTCATCTATGCTGTGGA+TGG + chr1_4:66121107-66121126 Msa0178720:CDS 40.0%
GATTCATCTATGCTGTGGAT+GGG + chr1_4:66121108-66121127 Msa0178720:CDS 40.0%
ATTCATCTATGCTGTGGATG+GGG + chr1_4:66121109-66121128 Msa0178720:CDS 40.0%
TGGATGGGGGATTAACATAA+AGG + chr1_4:66121123-66121142 Msa0178720:CDS 40.0%
AAGGATCCAATCGTTCACAA+AGG + chr1_4:66121149-66121168 Msa0178720:CDS 40.0%
AAAGTCTTACGATGCAGCAA+AGG - chr1_4:66121203-66121222 None:intergenic 40.0%
TATCTATGATGAAAGGAGGG+GGG - chr1_4:66121350-66121369 None:intergenic 40.0%
CATCCTTTGCAATTCAGTCA+TGG - chr1_4:66121588-66121607 None:intergenic 40.0%
TTGCAATCTCTCAATCACAC+AGG + chr1_4:66121740-66121759 Msa0178720:intron 40.0%
GGATGTATTCTCCTTTCTGT+TGG + chr1_4:66121766-66121785 Msa0178720:CDS 40.0%
!! CATCAGATGGAAGAAGTATC+TGG - chr1_4:66121918-66121937 None:intergenic 40.0%
TGTGGAACTAAATACTGCAG+CGG + chr1_4:66121963-66121982 Msa0178720:CDS 40.0%
TACTCCTGCCATAACAAACA+AGG - chr1_4:66122142-66122161 None:intergenic 40.0%
! GGCAGGAGTAATTTTTCTCT+TGG + chr1_4:66122152-66122171 Msa0178720:CDS 40.0%
!! GCAGATTTGTTATCACTGGA+TGG + chr1_4:66122428-66122447 Msa0178720:intron 40.0%
TGTTATCACTGGATGGTTAC+TGG + chr1_4:66122435-66122454 Msa0178720:CDS 40.0%
GCAACCACATTCATTCTTTG+CGG + chr1_4:66122460-66122479 Msa0178720:CDS 40.0%
!!! TTCGTTTTTTTGGCTCCCTT+TGG + chr1_4:66122561-66122580 Msa0178720:intron 40.0%
GTAAAAGGGTAAATGGCCAA+AGG - chr1_4:66122580-66122599 None:intergenic 40.0%
TTCTGATACTTGCATGGCTA+TGG + chr1_4:66122767-66122786 Msa0178720:CDS 40.0%
TCTGATACTTGCATGGCTAT+GGG + chr1_4:66122768-66122787 Msa0178720:CDS 40.0%
TTCTTTGATCAACGCATGGA+AGG - chr1_4:66122839-66122858 None:intergenic 40.0%
CCAGACTGATTGTAAAAACC+TGG - chr1_4:66122969-66122988 None:intergenic 40.0%
! CCAGGTTTTTACAATCAGTC+TGG + chr1_4:66122966-66122985 Msa0178720:CDS 40.0%
TTGTCAAAGGGATAGCATAG+TGG - chr1_4:66123005-66123024 None:intergenic 40.0%
TTCATCTGCCAATGCTTCAA+TGG + chr1_4:66123061-66123080 Msa0178720:CDS 40.0%
!!! GCTAGATGGTGATTTTTGGT+AGG + chr1_4:66123121-66123140 Msa0178720:intron 40.0%
!! CATACTCAAGTTTGTTGGGA+TGG - chr1_4:66123166-66123185 None:intergenic 40.0%
GCCTTCAGCCAAAATTCAAA+TGG + chr1_4:66123257-66123276 Msa0178720:intron 40.0%
!!! CCCATTTGAATTTTGGCTGA+AGG - chr1_4:66123261-66123280 None:intergenic 40.0%
ACTAACCACCATGCAACATT+CGG - chr1_4:66123310-66123329 None:intergenic 40.0%
TTCGGTCTGTGAATCGTAAA+AGG + chr1_4:66123580-66123599 Msa0178720:intron 40.0%
TTGGGAGAATTATGTATGCG+AGG + chr1_4:66123642-66123661 Msa0178720:CDS 40.0%
! TGTATGCGAGGTATCTGAAT+CGG + chr1_4:66123654-66123673 Msa0178720:CDS 40.0%
TATTTGCACTACAGTTGGCA+GGG + chr1_4:66123678-66123697 Msa0178720:CDS 40.0%
GCTAACTGCAAGTAAATCTC+TGG - chr1_4:66123709-66123728 None:intergenic 40.0%
! TTCTGCTTTGCCTTGTTCTA+TGG + chr1_4:66123902-66123921 Msa0178720:CDS 40.0%
ATGCTAAATTTGTGCTCTGG+TGG - chr1_4:66124014-66124033 None:intergenic 40.0%
GCAATGCTAAATTTGTGCTC+TGG - chr1_4:66124017-66124036 None:intergenic 40.0%
TATACTTCACTGCCTGCATT+TGG - chr1_4:66124039-66124058 None:intergenic 40.0%
CTAAAAGGAAGAAACCAAGG+TGG + chr1_4:66124125-66124144 Msa0178720:three_prime_UTR 40.0%
CTATTGTCTATGAACTCAGG+CGG - chr1_4:66124161-66124180 None:intergenic 40.0%
GTTGCCAGATTCCACAATGA+AGG + chr1_4:66119716-66119735 Msa0178720:exon 45.0%
TGAGCCTTCATTGTGGAATC+TGG - chr1_4:66119723-66119742 None:intergenic 45.0%
GAAGGAATGAGCCTTCATTG+TGG - chr1_4:66119730-66119749 None:intergenic 45.0%
!!! TCCACTTTTTCAGGAGGAAG+AGG + chr1_4:66120067-66120086 Msa0178720:intron 45.0%
TCCTCTTCCTCCTGAAAAAG+TGG - chr1_4:66120071-66120090 None:intergenic 45.0%
GGAGGAAGAGGAGTGAATAT+AGG + chr1_4:66120079-66120098 Msa0178720:intron 45.0%
CTCTTATTCTGGCGGCAAAT+AGG + chr1_4:66120161-66120180 Msa0178720:CDS 45.0%
GGATTTCATCGTTATCACGG+TGG + chr1_4:66120208-66120227 Msa0178720:CDS 45.0%
TTCATCGTTATCACGGTGGT+TGG + chr1_4:66120212-66120231 Msa0178720:CDS 45.0%
TCATCGTTATCACGGTGGTT+GGG + chr1_4:66120213-66120232 Msa0178720:CDS 45.0%
TTGCAGTCAGTTGGATTCAC+CGG + chr1_4:66121028-66121047 Msa0178720:intron 45.0%
TTCATCTATGCTGTGGATGG+GGG + chr1_4:66121110-66121129 Msa0178720:CDS 45.0%
ATCTATGATGAAAGGAGGGG+GGG - chr1_4:66121349-66121368 None:intergenic 45.0%
ATCTCTCAATCACACAGGAC+TGG + chr1_4:66121745-66121764 Msa0178720:intron 45.0%
TATTCTCCTTTCTGTTGGGC+AGG + chr1_4:66121771-66121790 Msa0178720:CDS 45.0%
ACTTATCCTGCCCAACAGAA+AGG - chr1_4:66121780-66121799 None:intergenic 45.0%
GTTGGGCAGGATAAGTTTCA+CGG + chr1_4:66121784-66121803 Msa0178720:CDS 45.0%
! GCAGACTCTGAGAAATGTCA+CGG + chr1_4:66121858-66121877 Msa0178720:CDS 45.0%
ACTTCTTCCATCTGATGTCC+TGG + chr1_4:66121921-66121940 Msa0178720:CDS 45.0%
ATACCATCCAGGACATCAGA+TGG - chr1_4:66121931-66121950 None:intergenic 45.0%
!!! CTGCTTATTTTGTAGGCGCA+CGG + chr1_4:66122116-66122135 Msa0178720:intron 45.0%
GTTGATATCCAAGGAGAGAC+AGG - chr1_4:66122295-66122314 None:intergenic 45.0%
CAGATAGCTAGGCATAGCAA+AGG - chr1_4:66122361-66122380 None:intergenic 45.0%
CACTCCGCAAAGAATGAATG+TGG - chr1_4:66122467-66122486 None:intergenic 45.0%
TTGCATGGCTATGGGAGAAT+GGG + chr1_4:66122776-66122795 Msa0178720:CDS 45.0%
CTAAGAGCAGATTCTCTGTG+TGG - chr1_4:66122810-66122829 None:intergenic 45.0%
GTGGTTCTTTGATCAACGCA+TGG - chr1_4:66122843-66122862 None:intergenic 45.0%
AATGCAACAAAGGGTCATCC+AGG + chr1_4:66122948-66122967 Msa0178720:CDS 45.0%
TCAAAGGGATAGCATAGTGG+CGG - chr1_4:66123002-66123021 None:intergenic 45.0%
!! ACTCAAGTTTGTTGGGATGG+CGG - chr1_4:66123163-66123182 None:intergenic 45.0%
!! TTTTGGCTGAAGGCCCTATT+TGG - chr1_4:66123251-66123270 None:intergenic 45.0%
GGTCTGTGAATCGTAAAAGG+AGG + chr1_4:66123583-66123602 Msa0178720:intron 45.0%
! GTATGCGAGGTATCTGAATC+GGG + chr1_4:66123655-66123674 Msa0178720:CDS 45.0%
TCGGGTATTTGCACTACAGT+TGG + chr1_4:66123673-66123692 Msa0178720:CDS 45.0%
GTATTTGCACTACAGTTGGC+AGG + chr1_4:66123677-66123696 Msa0178720:CDS 45.0%
TTTGTCAGGGATGCATTCAC+AGG + chr1_4:66123799-66123818 Msa0178720:CDS 45.0%
GCAGAACACCAACTGAAATG+AGG - chr1_4:66123888-66123907 None:intergenic 45.0%
ACAAACACTTCTCCCCTTTG+GGG - chr1_4:66123946-66123965 None:intergenic 45.0%
CACAAACACTTCTCCCCTTT+GGG - chr1_4:66123947-66123966 None:intergenic 45.0%
TCACAAACACTTCTCCCCTT+TGG - chr1_4:66123948-66123967 None:intergenic 45.0%
!! TCTAAAAAATAAATAAAAAA+AGG - chr1_4:66122390-66122409 None:intergenic 5.0%
GTATTATCACCTAGTGGCCC+TGG - chr1_4:66120142-66120161 None:intergenic 50.0%
AAGAATGAAACCCGTGGCAC+CGG - chr1_4:66121050-66121069 None:intergenic 50.0%
TCTATGATGAAAGGAGGGGG+GGG - chr1_4:66121348-66121367 None:intergenic 50.0%
CTTCCATCTGATGTCCTGGA+TGG + chr1_4:66121925-66121944 Msa0178720:CDS 50.0%
!! ACGGCCTTGTTTGTTATGGC+AGG + chr1_4:66122135-66122154 Msa0178720:CDS 50.0%
!! CTCTTGGCTCTAACTGGACT+AGG + chr1_4:66122168-66122187 Msa0178720:CDS 50.0%
CTTGCATGGCTATGGGAGAA+TGG + chr1_4:66122775-66122794 Msa0178720:CDS 50.0%
!! TCAAGTTTGTTGGGATGGCG+GGG - chr1_4:66123161-66123180 None:intergenic 50.0%
!! CTCAAGTTTGTTGGGATGGC+GGG - chr1_4:66123162-66123181 None:intergenic 50.0%
CATGCAACATTCGGTTCACC+TGG - chr1_4:66123301-66123320 None:intergenic 50.0%
CAGGTGAACCGAATGTTGCA+TGG + chr1_4:66123299-66123318 Msa0178720:intron 50.0%
GTGAACCGAATGTTGCATGG+TGG + chr1_4:66123302-66123321 Msa0178720:intron 50.0%
GCGTGTTAGACATGACCTAC+CGG + chr1_4:66123358-66123377 Msa0178720:intron 50.0%
GGACTTGGCCTCATTTCAGT+TGG + chr1_4:66123877-66123896 Msa0178720:CDS 50.0%
CAAACACTTCTCCCCTTTGG+GGG - chr1_4:66123945-66123964 None:intergenic 50.0%
AAAGTCACATGGGTGTGGGG+TGG - chr1_4:66119542-66119561 None:intergenic 55.0%
! AGTTGGATTCACCGGTGCCA+CGG + chr1_4:66121036-66121055 Msa0178720:CDS 55.0%
GACGGCAAGAATGAAACCCG+TGG - chr1_4:66121056-66121075 None:intergenic 55.0%
TATGATGAAAGGAGGGGGGG+GGG - chr1_4:66121346-66121365 None:intergenic 55.0%
CTATGATGAAAGGAGGGGGG+GGG - chr1_4:66121347-66121366 None:intergenic 55.0%
GCAGGATAAGTTTCACGGCG+AGG + chr1_4:66121789-66121808 Msa0178720:CDS 55.0%
TAAGTTTCACGGCGAGGCCT+TGG + chr1_4:66121795-66121814 Msa0178720:CDS 55.0%
!! GCGCACGGCCTTGTTTGTTA+TGG + chr1_4:66122131-66122150 Msa0178720:CDS 55.0%
CATGGCTATGGGAGAATGGG+TGG + chr1_4:66122779-66122798 Msa0178720:CDS 55.0%
! TAGCATAGTGGCGGCATTGG+AGG - chr1_4:66122993-66123012 None:intergenic 55.0%
GGATAGCATAGTGGCGGCAT+TGG - chr1_4:66122996-66123015 None:intergenic 55.0%
ACACAAGTGGCTCCAGCACC+AGG + chr1_4:66120121-66120140 Msa0178720:CDS 60.0%
CACAAGTGGCTCCAGCACCA+GGG + chr1_4:66120122-66120141 Msa0178720:CDS 60.0%
!! GTTGGATTCACCGGTGCCAC+GGG + chr1_4:66121037-66121056 Msa0178720:CDS 60.0%
ATGATGAAAGGAGGGGGGGG+GGG - chr1_4:66121345-66121364 None:intergenic 60.0%
TCGGCAGTCCTGTCTCTCCT+TGG + chr1_4:66122284-66122303 Msa0178720:intron 60.0%
!! GTTTGTTGGGATGGCGGGGA+GGG - chr1_4:66123157-66123176 None:intergenic 60.0%
!! AGTTTGTTGGGATGGCGGGG+AGG - chr1_4:66123158-66123177 None:intergenic 60.0%
TCTATGCGAACCGCCCCCAA+AGG + chr1_4:66123929-66123948 Msa0178720:CDS 60.0%
CTATGCGAACCGCCCCCAAA+GGG + chr1_4:66123930-66123949 Msa0178720:CDS 60.0%
TATGCGAACCGCCCCCAAAG+GGG + chr1_4:66123931-66123950 Msa0178720:CDS 60.0%
! ACACTTCTCCCCTTTGGGGG+CGG - chr1_4:66123942-66123961 None:intergenic 60.0%
TCACCTAGTGGCCCTGGTGC+TGG - chr1_4:66120136-66120155 None:intergenic 65.0%
TGATGAAAGGAGGGGGGGGG+GGG - chr1_4:66121344-66121363 None:intergenic 65.0%
GCTCCAGCACCAGGGCCACT+AGG + chr1_4:66120130-66120149 Msa0178720:CDS 70.0%
ATGAAAGGAGGGGGGGGGGG+GGG - chr1_4:66121342-66121361 None:intergenic 70.0%
GATGAAAGGAGGGGGGGGGG+GGG - chr1_4:66121343-66121362 None:intergenic 70.0%
!! TTGGGATGGCGGGGAGGGAG+GGG - chr1_4:66123152-66123171 None:intergenic 70.0%
!! GTTGGGATGGCGGGGAGGGA+GGG - chr1_4:66123153-66123172 None:intergenic 70.0%
!! TGTTGGGATGGCGGGGAGGG+AGG - chr1_4:66123154-66123173 None:intergenic 70.0%
GCGGCAGCTTCGCTCCACCT+TGG - chr1_4:66124142-66124161 None:intergenic 70.0%
TGAAAGGAGGGGGGGGGGGG+GGG - chr1_4:66121341-66121360 None:intergenic 75.0%
!! TGGGATGGCGGGGAGGGAGG+GGG - chr1_4:66123151-66123170 None:intergenic 75.0%
! AAAGGAGGGGGGGGGGGGGG+GGG - chr1_4:66121339-66121358 None:intergenic 80.0%
! GAAAGGAGGGGGGGGGGGGG+GGG - chr1_4:66121340-66121359 None:intergenic 80.0%
!!! GGGATGGCGGGGAGGGAGGG+GGG - chr1_4:66123150-66123169 None:intergenic 80.0%
! AAGGAGGGGGGGGGGGGGGG+GGG - chr1_4:66121338-66121357 None:intergenic 85.0%
! AGGAGGGGGGGGGGGGGGGG+GGG - chr1_4:66121337-66121356 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:66121334-66121353 None:intergenic 95.0%
! GAGGGGGGGGGGGGGGGGGG+GGG - chr1_4:66121335-66121354 None:intergenic 95.0%
! GGAGGGGGGGGGGGGGGGGG+GGG - chr1_4:66121336-66121355 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 66119366 66124279 66119366 ID=Msa0178720;Name=Msa0178720
chr1_4 mRNA 66119366 66124279 66119366 ID=Msa0178720-mRNA-1;Parent=Msa0178720;Name=Msa0178720-mRNA-1;_AED=0.09;_eAED=0.09;_QI=366|1|1|1|1|1|9|220|560
chr1_4 exon 66119366 66119858 66119366 ID=Msa0178720-mRNA-1:exon:21558;Parent=Msa0178720-mRNA-1
chr1_4 exon 66120080 66120261 66120080 ID=Msa0178720-mRNA-1:exon:21559;Parent=Msa0178720-mRNA-1
chr1_4 exon 66121034 66121212 66121034 ID=Msa0178720-mRNA-1:exon:21560;Parent=Msa0178720-mRNA-1
chr1_4 exon 66121762 66122046 66121762 ID=Msa0178720-mRNA-1:exon:21561;Parent=Msa0178720-mRNA-1
chr1_4 exon 66122131 66122189 66122131 ID=Msa0178720-mRNA-1:exon:21562;Parent=Msa0178720-mRNA-1
chr1_4 exon 66122291 66122327 66122291 ID=Msa0178720-mRNA-1:exon:21563;Parent=Msa0178720-mRNA-1
chr1_4 exon 66122432 66122503 66122432 ID=Msa0178720-mRNA-1:exon:21564;Parent=Msa0178720-mRNA-1
chr1_4 exon 66122761 66123082 66122761 ID=Msa0178720-mRNA-1:exon:21565;Parent=Msa0178720-mRNA-1
chr1_4 exon 66123640 66124279 66123640 ID=Msa0178720-mRNA-1:exon:21566;Parent=Msa0178720-mRNA-1
chr1_4 five_prime_UTR 66119366 66119731 66119366 ID=Msa0178720-mRNA-1:five_prime_utr;Parent=Msa0178720-mRNA-1
chr1_4 CDS 66119732 66119858 66119732 ID=Msa0178720-mRNA-1:cds;Parent=Msa0178720-mRNA-1
chr1_4 CDS 66120080 66120261 66120080 ID=Msa0178720-mRNA-1:cds;Parent=Msa0178720-mRNA-1
chr1_4 CDS 66121034 66121212 66121034 ID=Msa0178720-mRNA-1:cds;Parent=Msa0178720-mRNA-1
chr1_4 CDS 66121762 66122046 66121762 ID=Msa0178720-mRNA-1:cds;Parent=Msa0178720-mRNA-1
chr1_4 CDS 66122131 66122189 66122131 ID=Msa0178720-mRNA-1:cds;Parent=Msa0178720-mRNA-1
chr1_4 CDS 66122291 66122327 66122291 ID=Msa0178720-mRNA-1:cds;Parent=Msa0178720-mRNA-1
chr1_4 CDS 66122432 66122503 66122432 ID=Msa0178720-mRNA-1:cds;Parent=Msa0178720-mRNA-1
chr1_4 CDS 66122761 66123082 66122761 ID=Msa0178720-mRNA-1:cds;Parent=Msa0178720-mRNA-1
chr1_4 CDS 66123640 66124059 66123640 ID=Msa0178720-mRNA-1:cds;Parent=Msa0178720-mRNA-1
chr1_4 three_prime_UTR 66124060 66124279 66124060 ID=Msa0178720-mRNA-1:three_prime_utr;Parent=Msa0178720-mRNA-1
Gene Sequence

>Msa0178720

ATGAAGGCTCATTCCTTCAATGGGTTTTCGTTTTTCTTGTTCATTTTTGTTTTTCTGCTGTTTTTGAGCTCGAATTCAGCTTTATCTTCAACTGGGTCGATTGATCACCACATCAAGTTTATCATAGGAGGAAGAGGAGTGAATATAGGTTCATGGCAAAATGAAGTTACACAAGTGGCTCCAGCACCAGGGCCACTAGGTGATAATACTCTTATTCTGGCGGCAAATAGGACCAATAGACCTGATTTTCTTCGAGGATTTCATCGTTATCACGGTGGTTGGGATATTTCAGATCGGCATTATTGGGCTTCAGTTGGATTCACCGGTGCCACGGGTTTCATTCTTGCCGTCTTATGGTTTGTCTCATTTGGCTTGGCACTTGTGATTCATCTATGCTGTGGATGGGGGATTAACATAAAGGACAAAGGATCCAATCGTTCACAAAGGATTTGTCTTATATTGCTTTTAATATTCACCTTTGCTGCATCGACTGGATGTATTCTCCTTTCTGTTGGGCAGGATAAGTTTCACGGCGAGGCCTTGGATACCCTCCATTTTTTTGTCAATCAATCAGACTATACAGTGCAGACTCTGAGAAATGTCACGGAATATCTCTCCCTTGCAAAAACCATAAACGTCAACCAGATACTTCTTCCATCTGATGTCCTGGATGGTATTGATAAGTTGAATGTGGAACTAAATACTGCAGCGGATACAATTTCCGAAACAACAGATGAAAATTCCGTTAAAATTAGAAGATTATTCAATTATGTGCGCACGGCCTTGTTTGTTATGGCAGGAGTAATTTTTCTCTTGGCTCTAACTGGACTAGTCCTGTCTCTCCTTGGATATCAACATGCAATCATCTTATTTGTTATCACTGGATGGTTACTGGTTGCAACCACATTCATTCTTTGCGGAGTGTTCATGATCGTTAATAATACAATTTCTGATACTTGCATGGCTATGGGAGAATGGGTGGAAAATCCACACAGAGAATCTGCTCTTAGCGACGTCCTTCCATGCGTTGATCAAAGAACCACAAACAAAACACTTTTTCAAAGCAAACAAGTCGTCACCAATATTGCAAATATTGTCAACACGGTCATCTATACTACTGCAAACGTAAATGCAACAAAGGGTCATCCAGGTTTTTACAATCAGTCTGGGCCTCCAATGCCGCCACTATGCTATCCCTTTGACAATCAATTTCGAGAACGCCAATGTACAAATCAAGAAGTTTCATCTGCCAATGCTTCAATGGTTTGGGAGAATTATGTATGCGAGGTATCTGAATCGGGTATTTGCACTACAGTTGGCAGGGTGACCCCAGAGATTTACTTGCAGTTAGCAGCTGCAGCTAACGAAAGCTATGCATTAGAACATTATGCTCCACTTTTACTTAGCCTTCAGAATTGCAATTTTGTCAGGGATGCATTCACAGGAATCACTACAAATTACTGTCCTCCATTAAAGCATTACCTTAATATCATTAATGTAGGACTTGGCCTCATTTCAGTTGGTGTTCTGCTTTGCCTTGTTCTATGGATACTCTATGCGAACCGCCCCCAAAGGGGAGAAGTGTTTGTGATGCTATCCTTAAAAGAAAAAATAAAGAGCAGATTTAACAAGAACCACCAGAGCACAAATTTAGCATTGCCAAATGCAGGCAGTGAAGTATAG

Protein sequence

>Msa0178720

MKAHSFNGFSFFLFIFVFLLFLSSNSALSSTGSIDHHIKFIIGGRGVNIGSWQNEVTQVAPAPGPLGDNTLILAANRTNRPDFLRGFHRYHGGWDISDRHYWASVGFTGATGFILAVLWFVSFGLALVIHLCCGWGINIKDKGSNRSQRICLILLLIFTFAASTGCILLSVGQDKFHGEALDTLHFFVNQSDYTVQTLRNVTEYLSLAKTINVNQILLPSDVLDGIDKLNVELNTAADTISETTDENSVKIRRLFNYVRTALFVMAGVIFLLALTGLVLSLLGYQHAIILFVITGWLLVATTFILCGVFMIVNNTISDTCMAMGEWVENPHRESALSDVLPCVDQRTTNKTLFQSKQVVTNIANIVNTVIYTTANVNATKGHPGFYNQSGPPMPPLCYPFDNQFRERQCTNQEVSSANASMVWENYVCEVSESGICTTVGRVTPEIYLQLAAAANESYALEHYAPLLLSLQNCNFVRDAFTGITTNYCPPLKHYLNIINVGLGLISVGVLLCLVLWILYANRPQRGEVFVMLSLKEKIKSRFNKNHQSTNLALPNAGSEV*