Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089730 | XP_003592554.2 | 98.750 | 560 | 7 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089730 | G7IAT4 | 98.750 | 560 | 7 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1138 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002250 | Msa0089730 | 0.811101 | 8.282734e-51 | -8.615850e-47 |
| Msa0004480 | Msa0089730 | 0.803469 | 3.433999e-49 | -8.615850e-47 |
| Msa0028620 | Msa0089730 | 0.803749 | 3.004944e-49 | -8.615850e-47 |
| Msa0042810 | Msa0089730 | 0.900558 | 6.494419e-78 | -8.615850e-47 |
| Msa0043850 | Msa0089730 | 0.801573 | 8.449962e-49 | -8.615850e-47 |
| Msa0054920 | Msa0089730 | 0.805338 | 1.400995e-49 | -8.615850e-47 |
| Msa0060070 | Msa0089730 | 0.801046 | 1.083210e-48 | -8.615850e-47 |
| Msa0089730 | Msa0090510 | 0.811190 | 7.925517e-51 | -8.615850e-47 |
| Msa0089730 | Msa0098290 | 0.825438 | 4.687463e-54 | -8.615850e-47 |
| Msa0089730 | Msa0136630 | 0.834824 | 2.396546e-56 | -8.615850e-47 |
| Msa0089730 | Msa0144530 | 0.816881 | 4.398632e-52 | -8.615850e-47 |
| Msa0089730 | Msa0152560 | 0.812240 | 4.683803e-51 | -8.615850e-47 |
| Msa0089730 | Msa0160960 | 0.810541 | 1.095219e-50 | -8.615850e-47 |
| Msa0089730 | Msa0178720 | 0.847393 | 1.189898e-59 | -8.615850e-47 |
| Msa0089730 | Msa0224130 | 0.820566 | 6.408933e-53 | -8.615850e-47 |
| Msa0089730 | Msa0231920 | 0.831569 | 1.549820e-55 | -8.615850e-47 |
| Msa0089730 | Msa0265270 | 0.822799 | 1.951928e-53 | -8.615850e-47 |
| Msa0089730 | Msa0269560 | 0.809525 | 1.812724e-50 | -8.615850e-47 |
| Msa0089730 | Msa0271220 | 0.834870 | 2.333466e-56 | -8.615850e-47 |
| Msa0089730 | Msa0287870 | 0.811141 | 8.122287e-51 | -8.615850e-47 |
| Msa0089730 | Msa0305840 | 0.823774 | 1.155537e-53 | -8.615850e-47 |
| Msa0089730 | Msa0364790 | 0.808620 | 2.831402e-50 | -8.615850e-47 |
| Msa0089730 | Msa0372460 | 0.830072 | 3.608823e-55 | -8.615850e-47 |
| Msa0089730 | Msa0380600 | 0.815377 | 9.537985e-52 | -8.615850e-47 |
| Msa0089730 | Msa0388360 | 0.992849 | 7.906285e-196 | -8.615850e-47 |
| Msa0089730 | Msa0428200 | 0.803896 | 2.800972e-49 | -8.615850e-47 |
| Msa0089730 | Msa0430240 | 0.815444 | 9.217385e-52 | -8.615850e-47 |
| Msa0089730 | Msa0470880 | 0.800413 | 1.458344e-48 | -8.615850e-47 |
| Msa0089730 | Msa0512980 | 0.803998 | 2.667022e-49 | -8.615850e-47 |
| Msa0089730 | Msa0519160 | 0.845391 | 4.180709e-59 | -8.615850e-47 |
| Msa0089730 | Msa0536350 | 0.805862 | 1.087299e-49 | -8.615850e-47 |
| Msa0089730 | Msa0545050 | 0.827995 | 1.149789e-54 | -8.615850e-47 |
| Msa0089730 | Msa0600590 | 0.832422 | 9.539022e-56 | -8.615850e-47 |
| Msa0089730 | Msa0641130 | 0.833546 | 5.011114e-56 | -8.615850e-47 |
| Msa0089730 | Msa0654900 | 0.844252 | 8.482626e-59 | -8.615850e-47 |
| Msa0089730 | Msa0665530 | -0.802396 | 5.722331e-49 | -8.615850e-47 |
| Msa0089730 | Msa0698450 | 0.832287 | 1.030472e-55 | -8.615850e-47 |
| Msa0089730 | Msa0698460 | 0.841472 | 4.655840e-58 | -8.615850e-47 |
| Msa0089730 | Msa0742430 | 0.812906 | 3.348192e-51 | -8.615850e-47 |
| Msa0089730 | Msa0743930 | 0.812230 | 4.707251e-51 | -8.615850e-47 |
| Msa0089730 | Msa0772280 | 0.833523 | 5.079650e-56 | -8.615850e-47 |
| Msa0089730 | Msa0810440 | 0.836691 | 8.067756e-57 | -8.615850e-47 |
| Msa0089730 | Msa0816130 | 0.812739 | 3.643441e-51 | -8.615850e-47 |
| Msa0089730 | Msa0823540 | 0.859053 | 5.395220e-63 | -8.615850e-47 |
| Msa0089730 | Msa0846860 | 0.809824 | 1.563593e-50 | -8.615850e-47 |
| Msa0089730 | Msa0862620 | 0.851908 | 6.529934e-61 | -8.615850e-47 |
| Msa0089730 | Msa0863990 | 0.803785 | 2.953814e-49 | -8.615850e-47 |
| Msa0089730 | Msa0870510 | 0.802543 | 5.337180e-49 | -8.615850e-47 |
| Msa0089730 | Msa0878220 | 0.806301 | 8.790511e-50 | -8.615850e-47 |
| Msa0089730 | Msa0965290 | 0.802763 | 4.808318e-49 | -8.615850e-47 |
| Msa0089730 | Msa0999680 | 0.800440 | 1.439903e-48 | -8.615850e-47 |
| Msa0089730 | Msa1013070 | 0.806459 | 8.141942e-50 | -8.615850e-47 |
| Msa0089730 | Msa1054510 | 0.809728 | 1.639207e-50 | -8.615850e-47 |
| Msa0089730 | Msa1070540 | 0.808336 | 3.255586e-50 | -8.615850e-47 |
| Msa0089730 | Msa1089190 | 0.809296 | 2.030112e-50 | -8.615850e-47 |
| Msa0089730 | Msa1101240 | 0.803986 | 2.682534e-49 | -8.615850e-47 |
| Msa0089730 | Msa1107200 | 0.811053 | 8.483666e-51 | -8.615850e-47 |
| Msa0089730 | Msa1158390 | 0.804976 | 1.667891e-49 | -8.615850e-47 |
| Msa0089730 | Msa1183140 | 0.837876 | 4.013575e-57 | -8.615850e-47 |
| Msa0089730 | Msa1208990 | 0.800544 | 1.371550e-48 | -8.615850e-47 |
| Msa0089730 | Msa1212050 | 0.805595 | 1.237408e-49 | -8.615850e-47 |
| Msa0089730 | Msa1212130 | 0.803649 | 3.151497e-49 | -8.615850e-47 |
| Msa0089730 | Msa1214170 | 0.802337 | 5.885253e-49 | -8.615850e-47 |
| Msa0089730 | Msa1236440 | 0.817032 | 4.068479e-52 | -8.615850e-47 |
| Msa0089730 | Msa1238600 | 0.810750 | 9.867957e-51 | -8.615850e-47 |
| Msa0089730 | Msa1245440 | 0.802826 | 4.666496e-49 | -8.615850e-47 |
| Msa0089730 | Msa1259860 | 0.820541 | 6.493968e-53 | -8.615850e-47 |
| Msa0089730 | Msa1260680 | 0.810895 | 9.180900e-51 | -8.615850e-47 |
| Msa0089730 | Msa1277670 | 0.812409 | 4.301975e-51 | -8.615850e-47 |
| Msa0089730 | Msa1280090 | 0.807717 | 4.410417e-50 | -8.615850e-47 |
| Msa0089730 | Msa1309760 | 0.827936 | 1.187664e-54 | -8.615850e-47 |
| Msa0089730 | Msa1319560 | 0.824447 | 8.033034e-54 | -8.615850e-47 |
| Msa0089730 | Msa1364080 | 0.819337 | 1.224495e-52 | -8.615850e-47 |
| Msa0089730 | Msa1369920 | -0.830336 | 3.110197e-55 | -8.615850e-47 |
| Msa0089730 | Msa1380220 | 0.803191 | 3.922646e-49 | -8.615850e-47 |
| Msa0089730 | Msa1386890 | 0.807547 | 4.792451e-50 | -8.615850e-47 |
| Msa0089730 | Msa1430550 | 0.821060 | 4.934577e-53 | -8.615850e-47 |
| Msa0089730 | Msa1442920 | 0.804233 | 2.383904e-49 | -8.615850e-47 |
| Msa0089730 | Msa1458680 | 0.807384 | 5.190444e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089730 | MtrunA17_Chr1g0208531 | 98.750 | 560 | 7 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1138 |
| Msa0089730 | MtrunA17_Chr2g0304631 | 46.567 | 466 | 246 | 3 | 66 | 529 | 57 | 521 | 8.25e-139 | 412 |
| Msa0089730 | MtrunA17_Chr3g0137351 | 42.191 | 493 | 281 | 4 | 62 | 552 | 53 | 543 | 9.28e-133 | 399 |
| Msa0089730 | MtrunA17_Chr4g0065021 | 40.000 | 200 | 115 | 1 | 323 | 522 | 1 | 195 | 3.69e-45 | 158 |
| Msa0089730 | MtrunA17_Chr4g0065031 | 33.106 | 293 | 183 | 5 | 25 | 314 | 32 | 314 | 6.54e-42 | 153 |
| Msa0089730 | MtrunA17_Chr2g0329621 | 26.871 | 521 | 321 | 16 | 55 | 544 | 20 | 511 | 7.98e-40 | 152 |
| Msa0089730 | MtrunA17_Chr5g0401081 | 20.645 | 465 | 326 | 12 | 79 | 522 | 42 | 484 | 6.74e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089730 | AT1G71110.1 | 60.000 | 530 | 198 | 6 | 9 | 529 | 1 | 525 | 0.0 | 647 |
| Msa0089730 | AT2G12400.1 | 42.917 | 480 | 271 | 3 | 52 | 529 | 46 | 524 | 4.34e-131 | 394 |
| Msa0089730 | AT2G25270.1 | 38.104 | 538 | 320 | 5 | 14 | 538 | 3 | 540 | 4.62e-129 | 388 |
| Msa0089730 | AT1G80540.3 | 36.344 | 465 | 287 | 6 | 71 | 527 | 18 | 481 | 3.95e-95 | 299 |
| Msa0089730 | AT1G80540.1 | 36.344 | 465 | 287 | 6 | 71 | 527 | 64 | 527 | 9.71e-95 | 300 |
| Msa0089730 | AT1G80540.2 | 35.121 | 373 | 238 | 4 | 159 | 527 | 2 | 374 | 6.47e-73 | 238 |
| Msa0089730 | AT5G67550.1 | 21.622 | 481 | 336 | 14 | 76 | 534 | 35 | 496 | 4.54e-22 | 100 |
Find 150 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTATCTGGTTGACGTTTA+TGG | 0.177193 | 1_2:-71400273 | None:intergenic |
| AGCACAAAAGTGAAGAAAAT+TGG | 0.182572 | 1_2:+71398145 | Msa0089730:five_prime_UTR |
| TTCTGCTTTGCCTTGTTCTA+TGG | 0.194171 | 1_2:+71402273 | Msa0089730:CDS |
| ATAATCCAAAACATTATTAT+TGG | 0.225525 | 1_2:+71397897 | Msa0089730:five_prime_UTR |
| CACAAACACTTCTCCCCTTT+GGG | 0.225734 | 1_2:-71402315 | None:intergenic |
| GTTTCATTCTTGCCGTCTTA+TGG | 0.256105 | 1_2:+71399550 | Msa0089730:CDS |
| GTTGACAATATTTGCAATAT+TGG | 0.267190 | 1_2:-71401269 | None:intergenic |
| ACTGCACTCTATATACTAAA+AGG | 0.268913 | 1_2:+71402481 | Msa0089730:three_prime_UTR |
| ACTCATTTATATATCTATAT+TGG | 0.270270 | 1_2:-71402619 | None:intergenic |
| ATATTTCAGATCGGCATTAT+TGG | 0.275242 | 1_2:+71398728 | Msa0089730:CDS |
| CTCTTATTCTGGCGGCAAAT+AGG | 0.276223 | 1_2:+71398653 | Msa0089730:CDS |
| GTCTTATGGTTTGTCTCATT+TGG | 0.281337 | 1_2:+71399564 | Msa0089730:CDS |
| GTCCTACATTAATGATATTA+AGG | 0.293341 | 1_2:-71402229 | None:intergenic |
| TGTTATCACTGGATGGTTAC+TGG | 0.300691 | 1_2:+71400806 | Msa0089730:CDS |
| ATATTAAGGTAATGCTTTAA+TGG | 0.308224 | 1_2:-71402215 | None:intergenic |
| AATTCAGCTTTATCTTCAAC+TGG | 0.310962 | 1_2:+71398297 | Msa0089730:CDS |
| TATTTCAGATCGGCATTATT+GGG | 0.318265 | 1_2:+71398729 | Msa0089730:CDS |
| GAGTGCAGTAAAACAATAAT+AGG | 0.322407 | 1_2:-71402467 | None:intergenic |
| CGTGTTGTTCACTTTAATTT+TGG | 0.335918 | 1_2:-71397921 | None:intergenic |
| AGGTGATAATACTCTTATTC+TGG | 0.339822 | 1_2:+71398642 | Msa0089730:CDS |
| TTGGTCCAATAATAATGTTT+TGG | 0.362968 | 1_2:-71397902 | None:intergenic |
| TCACAAACACTTCTCCCCTT+TGG | 0.370346 | 1_2:-71402316 | None:intergenic |
| GCGCACGGCCTTGTTTGTTA+TGG | 0.371299 | 1_2:+71400502 | Msa0089730:CDS |
| TCACCTAGTGGCCCTGGTGC+TGG | 0.373820 | 1_2:-71398625 | None:intergenic |
| TTCTGATACTTGCATGGCTA+TGG | 0.374645 | 1_2:+71401138 | Msa0089730:CDS |
| CTCTTGGCTCTAACTGGACT+AGG | 0.381640 | 1_2:+71400539 | Msa0089730:CDS |
| CACCACATCAAGTTTATCAT+AGG | 0.382134 | 1_2:+71398330 | Msa0089730:CDS |
| ATGAAGGCTCATTCCTTCAA+TGG | 0.388869 | 1_2:+71398225 | Msa0089730:CDS |
| GGATGTATTCTCCTTTCTGT+TGG | 0.395056 | 1_2:+71400137 | Msa0089730:CDS |
| GCTAACTGCAAGTAAATCTC+TGG | 0.399430 | 1_2:-71402077 | None:intergenic |
| ATGGTTTGTCTCATTTGGCT+TGG | 0.401760 | 1_2:+71399569 | Msa0089730:CDS |
| TAGACTTCACTGCCTGCATT+TGG | 0.410089 | 1_2:-71402407 | None:intergenic |
| TCGAAGAAAATCAGGTCTAT+TGG | 0.415895 | 1_2:-71398677 | None:intergenic |
| TGAAATCCTCGAAGAAAATC+AGG | 0.422490 | 1_2:-71398685 | None:intergenic |
| GCACAAAAGTGAAGAAAATT+GGG | 0.425340 | 1_2:+71398146 | Msa0089730:five_prime_UTR |
| CATCAGATGGAAGAAGTATC+TGG | 0.429382 | 1_2:-71400286 | None:intergenic |
| TAAGTTTCACGGCGAGGCCT+TGG | 0.429494 | 1_2:+71400166 | Msa0089730:CDS |
| TTCATCTGCCAATGCTTCAA+TGG | 0.432553 | 1_2:+71401432 | Msa0089730:CDS |
| TATTCTCCTTTCTGTTGGGC+AGG | 0.443697 | 1_2:+71400142 | Msa0089730:CDS |
| GATGTATTCTCCTTTCTGTT+GGG | 0.445649 | 1_2:+71400138 | Msa0089730:CDS |
| GGATAGCATAGTGGCGGCAT+TGG | 0.448863 | 1_2:-71401364 | None:intergenic |
| TGAAGGCTCATTCCTTCAAT+GGG | 0.450995 | 1_2:+71398226 | Msa0089730:CDS |
| ACGGCCTTGTTTGTTATGGC+AGG | 0.454318 | 1_2:+71400506 | Msa0089730:CDS |
| TGGGTTCATAGAGTCTAAAA+TGG | 0.455185 | 1_2:+71398165 | Msa0089730:five_prime_UTR |
| TTCATCGTTATCACGGTGGT+TGG | 0.455519 | 1_2:+71398704 | Msa0089730:CDS |
| GCAATGCTAAATTTGTGCTC+TGG | 0.457671 | 1_2:-71402385 | None:intergenic |
| ACTTCTTCCATCTGATGTCC+TGG | 0.459835 | 1_2:+71400292 | Msa0089730:CDS |
| GGAGGAAGAGGAGTGAATAT+AGG | 0.462519 | 1_2:+71398571 | Msa0089730:intron |
| TGATTCATCTATGCTGTGGA+TGG | 0.465197 | 1_2:+71399598 | Msa0089730:CDS |
| GCAACCACATTCATTCTTTG+CGG | 0.465286 | 1_2:+71400831 | Msa0089730:CDS |
| TCGGCAGTCCTGTCTCTCCT+TGG | 0.466551 | 1_2:+71400655 | Msa0089730:intron |
| GTATGCGAGGTATCTGAATC+AGG | 0.466931 | 1_2:+71402026 | Msa0089730:CDS |
| TCATCGTTATCACGGTGGTT+GGG | 0.467508 | 1_2:+71398705 | Msa0089730:CDS |
| TTCTCGAAATTGATTGTCAA+AGG | 0.468444 | 1_2:-71401386 | None:intergenic |
| GAGGAGTGAATATAGGTTCA+TGG | 0.470463 | 1_2:+71398578 | Msa0089730:CDS |
| CTTGCATGGCTATGGGAGAA+TGG | 0.470490 | 1_2:+71401146 | Msa0089730:CDS |
| ACACAAGTGGCTCCAGCACC+AGG | 0.470901 | 1_2:+71398613 | Msa0089730:CDS |
| ACAAATCCTTTGTGAACGAT+TGG | 0.470926 | 1_2:-71399646 | None:intergenic |
| TTTGTCAGGGATGCATTCAC+AGG | 0.471664 | 1_2:+71402170 | Msa0089730:CDS |
| AAACTTCTTGATTTGTACAT+TGG | 0.474575 | 1_2:-71401411 | None:intergenic |
| GTTGATATCCAAGGAGAGAC+AGG | 0.479405 | 1_2:-71400663 | None:intergenic |
| CTGTTATATTTGCAGTCAGT+TGG | 0.479934 | 1_2:+71399510 | Msa0089730:intron |
| AAATAATACCATTGAAGCAT+TGG | 0.484010 | 1_2:-71401440 | None:intergenic |
| GCGGCAGCTTCGCTCCACCT+TGG | 0.484210 | 1_2:-71402510 | None:intergenic |
| GTTGCAAGAATCCACAATGA+AGG | 0.484798 | 1_2:+71398209 | Msa0089730:exon |
| TTGCAGTCAGTTGGATTCAC+CGG | 0.485005 | 1_2:+71399519 | Msa0089730:intron |
| TAGCATAGTGGCGGCATTGG+AGG | 0.485779 | 1_2:-71401361 | None:intergenic |
| GTATTTGCACTACAGTTGGC+AGG | 0.490378 | 1_2:+71402048 | Msa0089730:CDS |
| GGACTTGGCCTCATTTCAGT+TGG | 0.492225 | 1_2:+71402248 | Msa0089730:CDS |
| GTTGGATTCACCGGTGCCAC+GGG | 0.493182 | 1_2:+71399528 | Msa0089730:CDS |
| TTCACTTTCTTAGATCATAT+AGG | 0.495375 | 1_2:+71398096 | Msa0089730:five_prime_UTR |
| TTGCATGGCTATGGGAGAAT+GGG | 0.496761 | 1_2:+71401147 | Msa0089730:CDS |
| ATTCATCTATGCTGTGGATG+GGG | 0.500948 | 1_2:+71399600 | Msa0089730:CDS |
| TATAAAAGTCACATGGGTGT+GGG | 0.504963 | 1_2:-71398035 | None:intergenic |
| AAGAATGAAACCCGTGGCAC+CGG | 0.505503 | 1_2:-71399538 | None:intergenic |
| GTTGGGCAGGATAAGTTTCA+CGG | 0.506973 | 1_2:+71400155 | Msa0089730:CDS |
| AGTTGGATTCACCGGTGCCA+CGG | 0.507428 | 1_2:+71399527 | Msa0089730:CDS |
| TACCTTAATATCATTAATGT+AGG | 0.508015 | 1_2:+71402227 | Msa0089730:CDS |
| GTATTATCACCTAGTGGCCC+TGG | 0.510784 | 1_2:-71398631 | None:intergenic |
| TCTGATACTTGCATGGCTAT+GGG | 0.511515 | 1_2:+71401139 | Msa0089730:CDS |
| TTATAAAAGTCACATGGGTG+TGG | 0.512834 | 1_2:-71398036 | None:intergenic |
| TACAATTTCTGATACTTGCA+TGG | 0.513443 | 1_2:+71401132 | Msa0089730:CDS |
| ATGCTAAATTTGTGCTCTGG+TGG | 0.516026 | 1_2:-71402382 | None:intergenic |
| TTCTGAAGGCTAAGTAAAAG+TGG | 0.518057 | 1_2:-71402140 | None:intergenic |
| AATTTAGCATTGCCAAATGC+AGG | 0.518871 | 1_2:+71402395 | Msa0089730:CDS |
| AATATCATTAATGTAGGACT+TGG | 0.522457 | 1_2:+71402233 | Msa0089730:CDS |
| GCTCCAGCACCAGGGCCACT+AGG | 0.526747 | 1_2:+71398622 | Msa0089730:CDS |
| TCTCGAAATTGATTGTCAAA+GGG | 0.529864 | 1_2:-71401385 | None:intergenic |
| GCAGATTTGTTATCACTGGA+TGG | 0.536855 | 1_2:+71400799 | Msa0089730:intron |
| TCAGGTATTTGCACTACAGT+TGG | 0.539896 | 1_2:+71402044 | Msa0089730:CDS |
| CTAACTGCAAGTAAATCTCT+GGG | 0.545916 | 1_2:-71402076 | None:intergenic |
| ACTTATCCTGCCCAACAGAA+AGG | 0.546266 | 1_2:-71400148 | None:intergenic |
| CTTCCATCTGATGTCCTGGA+TGG | 0.547833 | 1_2:+71400296 | Msa0089730:CDS |
| GATTCATCTATGCTGTGGAT+GGG | 0.549596 | 1_2:+71399599 | Msa0089730:CDS |
| ACAAACACTTCTCCCCTTTG+GGG | 0.558946 | 1_2:-71402314 | None:intergenic |
| GCAAACGTAAATGCAACAAA+GGG | 0.559605 | 1_2:+71401310 | Msa0089730:CDS |
| AATGCAACAAAGGGTCATCC+AGG | 0.560684 | 1_2:+71401319 | Msa0089730:CDS |
| TTCATCTATGCTGTGGATGG+GGG | 0.565637 | 1_2:+71399601 | Msa0089730:CDS |
| TTGCTATTGTCTATGAACTC+AGG | 0.569871 | 1_2:-71402532 | None:intergenic |
| TGCAAACGTAAATGCAACAA+AGG | 0.571083 | 1_2:+71401309 | Msa0089730:CDS |
| ATACCATCCAGGACATCAGA+TGG | 0.573820 | 1_2:-71400299 | None:intergenic |
| CGAGGATTTCATCGTTATCA+CGG | 0.574421 | 1_2:+71398697 | Msa0089730:CDS |
| TGACAAAATTGCAATTCTGA+AGG | 0.579139 | 1_2:-71402154 | None:intergenic |
| CATGGCTATGGGAGAATGGG+TGG | 0.581284 | 1_2:+71401150 | Msa0089730:CDS |
| GCAGAACACCAACTGAAATG+AGG | 0.592050 | 1_2:-71402256 | None:intergenic |
| TTCTTTGATCAACGCATGGA+AGG | 0.594653 | 1_2:-71401207 | None:intergenic |
| TGGTATTGATAAGTTGAATG+TGG | 0.597976 | 1_2:+71400316 | Msa0089730:CDS |
| AAAGTCTTACGATGCAGCAA+AGG | 0.601124 | 1_2:-71399691 | None:intergenic |
| CTTGTGATTCATCTATGCTG+TGG | 0.603282 | 1_2:+71399594 | Msa0089730:CDS |
| TCAACTTATCAATACCATCC+AGG | 0.603553 | 1_2:-71400310 | None:intergenic |
| TAGAAATTATAAAAGTCACA+TGG | 0.608328 | 1_2:-71398042 | None:intergenic |
| ATTCAGCTTTATCTTCAACT+GGG | 0.608828 | 1_2:+71398298 | Msa0089730:CDS |
| TATTTGCACTACAGTTGGCA+GGG | 0.613241 | 1_2:+71402049 | Msa0089730:CDS |
| TTAAGGTAATGCTTTAATGG+AGG | 0.616479 | 1_2:-71402212 | None:intergenic |
| GCAAAATGAAGTTACACAAG+TGG | 0.620200 | 1_2:+71398600 | Msa0089730:CDS |
| CATAGAGTATCCATAGAACA+AGG | 0.621481 | 1_2:-71402283 | None:intergenic |
| TTGTCAAAGGGATAGCATAG+TGG | 0.622154 | 1_2:-71401373 | None:intergenic |
| TTGGGAGAATTATGTATGCG+AGG | 0.624037 | 1_2:+71402013 | Msa0089730:CDS |
| ATAAAAGTCACATGGGTGTG+GGG | 0.624614 | 1_2:-71398034 | None:intergenic |
| TGATAATACTCTTATTCTGG+CGG | 0.626823 | 1_2:+71398645 | Msa0089730:CDS |
| AGAAATTATAAAAGTCACAT+GGG | 0.627293 | 1_2:-71398041 | None:intergenic |
| ATACTAAAAGGAAGAAACCA+AGG | 0.631973 | 1_2:+71402493 | Msa0089730:three_prime_UTR |
| GGGATTAACATAAAGGACAA+AGG | 0.636198 | 1_2:+71399621 | Msa0089730:CDS |
| AACCTATGATAAACTTGATG+TGG | 0.636454 | 1_2:-71398332 | None:intergenic |
| CAAACACTTCTCCCCTTTGG+GGG | 0.639045 | 1_2:-71402313 | None:intergenic |
| CTATTGTCTATGAACTCAGG+CGG | 0.640227 | 1_2:-71402529 | None:intergenic |
| TACTCCTGCCATAACAAACA+AGG | 0.640964 | 1_2:-71400510 | None:intergenic |
| GTGGTTCTTTGATCAACGCA+TGG | 0.641600 | 1_2:-71401211 | None:intergenic |
| TGATCTAAGAAAGTGAAGAA+CGG | 0.642662 | 1_2:-71398090 | None:intergenic |
| ATGAGTATTTACATATACAC+GGG | 0.643174 | 1_2:-71402577 | None:intergenic |
| TGATTGCATGTTGATATCCA+AGG | 0.647031 | 1_2:-71400672 | None:intergenic |
| AAAGTCACATGGGTGTGGGG+TGG | 0.649539 | 1_2:-71398031 | None:intergenic |
| AAATGAGACAAACCATAAGA+CGG | 0.652641 | 1_2:-71399562 | None:intergenic |
| GTGGTTGGGATATTTCAGAT+CGG | 0.653513 | 1_2:+71398719 | Msa0089730:CDS |
| GCAGACTCTGAGAAATGTCA+CGG | 0.656398 | 1_2:+71400229 | Msa0089730:CDS |
| TGTGGAACTAAATACTGCAG+CGG | 0.659585 | 1_2:+71400334 | Msa0089730:CDS |
| CTAAGAGCAGATTCTCTGTG+TGG | 0.660144 | 1_2:-71401178 | None:intergenic |
| GCAGGATAAGTTTCACGGCG+AGG | 0.664395 | 1_2:+71400160 | Msa0089730:CDS |
| TATTGCAAATATTGTCAACA+CGG | 0.666087 | 1_2:+71401273 | Msa0089730:CDS |
| TCAAAGGGATAGCATAGTGG+CGG | 0.668642 | 1_2:-71401370 | None:intergenic |
| GAAGGAATGAGCCTTCATTG+TGG | 0.668831 | 1_2:-71398220 | None:intergenic |
| GATGAGTATTTACATATACA+CGG | 0.673410 | 1_2:-71402578 | None:intergenic |
| CACAAGTGGCTCCAGCACCA+GGG | 0.678997 | 1_2:+71398614 | Msa0089730:CDS |
| AAGGATCCAATCGTTCACAA+AGG | 0.682188 | 1_2:+71399640 | Msa0089730:CDS |
| ATAAGAGTATTATCACCTAG+TGG | 0.683571 | 1_2:-71398637 | None:intergenic |
| GGATTTCATCGTTATCACGG+TGG | 0.704106 | 1_2:+71398700 | Msa0089730:CDS |
| CACTCCGCAAAGAATGAATG+TGG | 0.705480 | 1_2:-71400835 | None:intergenic |
| GACGGCAAGAATGAAACCCG+TGG | 0.726515 | 1_2:-71399544 | None:intergenic |
| CTAAAAGGAAGAAACCAAGG+TGG | 0.757613 | 1_2:+71402496 | Msa0089730:three_prime_UTR |
| TAACTGCAAGTAAATCTCTG+GGG | 0.763572 | 1_2:-71402075 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CCTTTTAATTATTTTATTTT+CGG | + | chr1_2:71400636-71400655 | Msa0089730:intron | 10.0% |
| !! | ATTCAAAATTTAAAGATAAT+TGG | - | chr1_2:71401041-71401060 | None:intergenic | 10.0% |
| !! | ATAATCCAAAACATTATTAT+TGG | + | chr1_2:71397897-71397916 | Msa0089730:five_prime_UTR | 15.0% |
| !!! | TTTAGATCTTTTAAATCTTA+GGG | + | chr1_2:71398405-71398424 | Msa0089730:intron | 15.0% |
| !! | ATATTGGATTTATATGTTAT+AGG | + | chr1_2:71398976-71398995 | Msa0089730:intron | 15.0% |
| !!! | ACTTTTTTTGCTTATATTTA+AGG | - | chr1_2:71399172-71399191 | None:intergenic | 15.0% |
| !!! | GAATAATCTTCTAATTTTAA+CGG | - | chr1_2:71400390-71400409 | None:intergenic | 15.0% |
| !! | CCGAAAATAAAATAATTAAA+AGG | - | chr1_2:71400639-71400658 | None:intergenic | 15.0% |
| !!! | TTTTGAATTTTTTGTCTTTA+TGG | + | chr1_2:71401053-71401072 | Msa0089730:intron | 15.0% |
| !! | AGCTTGATATATAAAATTAA+GGG | - | chr1_2:71401470-71401489 | None:intergenic | 15.0% |
| !! | AAGCTTGATATATAAAATTA+AGG | - | chr1_2:71401471-71401490 | None:intergenic | 15.0% |
| !! | AGTAAAAAAAATATCAACAT+AGG | + | chr1_2:71401886-71401905 | Msa0089730:intron | 15.0% |
| !! | GTAAAAAAAATATCAACATA+GGG | + | chr1_2:71401887-71401906 | Msa0089730:intron | 15.0% |
| !!! | TCATTTTGTTTAAATTTTTC+AGG | + | chr1_2:71401989-71402008 | Msa0089730:intron | 15.0% |
| !! | ACTCATTTATATATCTATAT+TGG | - | chr1_2:71402622-71402641 | None:intergenic | 15.0% |
| !! | AGAAATTATAAAAGTCACAT+GGG | - | chr1_2:71398044-71398063 | None:intergenic | 20.0% |
| !! | TAGAAATTATAAAAGTCACA+TGG | - | chr1_2:71398045-71398064 | None:intergenic | 20.0% |
| !!! | GTTTAGATCTTTTAAATCTT+AGG | + | chr1_2:71398404-71398423 | Msa0089730:intron | 20.0% |
| !! | GATATTGTTGGATTATTATT+CGG | + | chr1_2:71398513-71398532 | Msa0089730:intron | 20.0% |
| !! | ATATTGTTGGATTATTATTC+GGG | + | chr1_2:71398514-71398533 | Msa0089730:intron | 20.0% |
| !! | GTATTTAGTCCAAATATTTA+AGG | + | chr1_2:71399196-71399215 | Msa0089730:intron | 20.0% |
| !!! | CTTTTTTGCTTATATTTTCA+AGG | - | chr1_2:71399299-71399318 | None:intergenic | 20.0% |
| !! | TTCAAGAACAAAAATAAAGA+AGG | - | chr1_2:71399407-71399426 | None:intergenic | 20.0% |
| !! | AACATTGAATTGAAGTAAAA+GGG | - | chr1_2:71400965-71400984 | None:intergenic | 20.0% |
| !! | AAACATTGAATTGAAGTAAA+AGG | - | chr1_2:71400966-71400985 | None:intergenic | 20.0% |
| !!! | TTTTGTCTTTATGGTAAAAA+AGG | + | chr1_2:71401062-71401081 | Msa0089730:intron | 20.0% |
| !! | AGAATTAATTTATTCGTATC+AGG | - | chr1_2:71401105-71401124 | None:intergenic | 20.0% |
| !! | TGTAATTTATAATGAGTGAT+TGG | + | chr1_2:71401591-71401610 | Msa0089730:intron | 20.0% |
| !!! | TAATCTCTAAATTTTGTTCA+TGG | + | chr1_2:71401927-71401946 | Msa0089730:intron | 20.0% |
| !!! | TTGTTTAAATTTTTCAGGTT+TGG | + | chr1_2:71401994-71402013 | Msa0089730:intron | 20.0% |
| !!! | TGTTTAAATTTTTCAGGTTT+GGG | + | chr1_2:71401995-71402014 | Msa0089730:intron | 20.0% |
| !! | ATATTAAGGTAATGCTTTAA+TGG | - | chr1_2:71402218-71402237 | None:intergenic | 20.0% |
| !! | TACCTTAATATCATTAATGT+AGG | + | chr1_2:71402227-71402246 | Msa0089730:CDS | 20.0% |
| !!! | GCTCTTTATTTTTTCTTTTA+AGG | - | chr1_2:71402348-71402367 | None:intergenic | 20.0% |
| !! | TTGGTCCAATAATAATGTTT+TGG | - | chr1_2:71397905-71397924 | None:intergenic | 25.0% |
| ! | AAAGAACAAAACTAAAAACG+CGG | - | chr1_2:71397973-71397992 | None:intergenic | 25.0% |
| ! | TTCACTTTCTTAGATCATAT+AGG | + | chr1_2:71398096-71398115 | Msa0089730:five_prime_UTR | 25.0% |
| !! | TTATTTGTGATTTTCTGTGA+TGG | + | chr1_2:71398376-71398395 | Msa0089730:intron | 25.0% |
| !! | TATTTGTGATTTTCTGTGAT+GGG | + | chr1_2:71398377-71398396 | Msa0089730:intron | 25.0% |
| ! | CAATATCATAGAGAAATGAA+AGG | - | chr1_2:71398500-71398519 | None:intergenic | 25.0% |
| ! | TCATTTCTCTATGATATTGT+TGG | + | chr1_2:71398501-71398520 | Msa0089730:intron | 25.0% |
| !!! | TTATTTGATTCCACTTTTTC+AGG | + | chr1_2:71398550-71398569 | Msa0089730:intron | 25.0% |
| !!! | TCATAATCATTTTTCTAGGT+TGG | + | chr1_2:71398776-71398795 | Msa0089730:intron | 25.0% |
| ! | TACTTGTGTGATATCTATAT+TGG | + | chr1_2:71398960-71398979 | Msa0089730:intron | 25.0% |
| ! | ATGTTATAGGAAATGTGATA+TGG | + | chr1_2:71398989-71399008 | Msa0089730:intron | 25.0% |
| ! | GTATTTAGTCCAAGTATTTA+AGG | + | chr1_2:71399324-71399343 | Msa0089730:intron | 25.0% |
| !! | CAGATTTTTATCTTCTTCTT+TGG | + | chr1_2:71399765-71399784 | Msa0089730:intron | 25.0% |
| ! | TTATATCTATGATGAAAGGA+GGG | - | chr1_2:71399824-71399843 | None:intergenic | 25.0% |
| ! | TTTATATCTATGATGAAAGG+AGG | - | chr1_2:71399825-71399844 | None:intergenic | 25.0% |
| !! | GCTTTTATATCTATGATGAA+AGG | - | chr1_2:71399828-71399847 | None:intergenic | 25.0% |
| ! | TTCGTCAGAAATATATATGT+CGG | + | chr1_2:71400078-71400097 | Msa0089730:intron | 25.0% |
| ! | TTGATTGACAAAAAAATGGA+GGG | - | chr1_2:71400195-71400214 | None:intergenic | 25.0% |
| ! | ATTGATTGACAAAAAAATGG+AGG | - | chr1_2:71400196-71400215 | None:intergenic | 25.0% |
| ! | CTGATTGATTGACAAAAAAA+TGG | - | chr1_2:71400199-71400218 | None:intergenic | 25.0% |
| ! | ACAAAATATGCAGAATTTAG+AGG | - | chr1_2:71400443-71400462 | None:intergenic | 25.0% |
| ! | CTGAAATCTGTTAGATATAA+TGG | - | chr1_2:71400887-71400906 | None:intergenic | 25.0% |
| !!! | TTGAACTGAATTCGTTTTTT+TGG | + | chr1_2:71400922-71400941 | Msa0089730:intron | 25.0% |
| ! | AATTGAAGTAAAAGGGTAAA+TGG | - | chr1_2:71400958-71400977 | None:intergenic | 25.0% |
| !!! | TTCATTTCAGGTTTTGTTAT+GGG | - | chr1_2:71400997-71401016 | None:intergenic | 25.0% |
| !!! | TTGAAAAAGTGTTTTGTTTG+TGG | - | chr1_2:71401233-71401252 | None:intergenic | 25.0% |
| ! | GTTGACAATATTTGCAATAT+TGG | - | chr1_2:71401272-71401291 | None:intergenic | 25.0% |
| ! | TATTGCAAATATTGTCAACA+CGG | + | chr1_2:71401273-71401292 | Msa0089730:CDS | 25.0% |
| !!! | AAACTTCTTGATTTGTACAT+TGG | - | chr1_2:71401414-71401433 | None:intergenic | 25.0% |
| ! | AAATAATACCATTGAAGCAT+TGG | - | chr1_2:71401443-71401462 | None:intergenic | 25.0% |
| !!! | CATTTAAAACATTGACTTGT+TGG | + | chr1_2:71401752-71401771 | Msa0089730:intron | 25.0% |
| ! | AAATATCAACATAGGGAAAT+TGG | + | chr1_2:71401894-71401913 | Msa0089730:intron | 25.0% |
| !! | CTAAATTTTGTTCATGGTTT+CGG | + | chr1_2:71401933-71401952 | Msa0089730:intron | 25.0% |
| ! | GTCCTACATTAATGATATTA+AGG | - | chr1_2:71402232-71402251 | None:intergenic | 25.0% |
| ! | AATATCATTAATGTAGGACT+TGG | + | chr1_2:71402233-71402252 | Msa0089730:CDS | 25.0% |
| ! | ATGAGTATTTACATATACAC+GGG | - | chr1_2:71402580-71402599 | None:intergenic | 25.0% |
| ! | GATGAGTATTTACATATACA+CGG | - | chr1_2:71402581-71402600 | None:intergenic | 25.0% |
| !! | CGTGTTGTTCACTTTAATTT+TGG | - | chr1_2:71397924-71397943 | None:intergenic | 30.0% |
| AAGAACAAAACTAAAAACGC+GGG | - | chr1_2:71397972-71397991 | None:intergenic | 30.0% | |
| TGATCTAAGAAAGTGAAGAA+CGG | - | chr1_2:71398093-71398112 | None:intergenic | 30.0% | |
| !!! | CACTTTTGTGCTTTATTTTG+AGG | - | chr1_2:71398137-71398156 | None:intergenic | 30.0% |
| AGCACAAAAGTGAAGAAAAT+TGG | + | chr1_2:71398145-71398164 | Msa0089730:five_prime_UTR | 30.0% | |
| GCACAAAAGTGAAGAAAATT+GGG | + | chr1_2:71398146-71398165 | Msa0089730:five_prime_UTR | 30.0% | |
| ! | AATTCAGCTTTATCTTCAAC+TGG | + | chr1_2:71398297-71398316 | Msa0089730:CDS | 30.0% |
| ! | ATTCAGCTTTATCTTCAACT+GGG | + | chr1_2:71398298-71398317 | Msa0089730:CDS | 30.0% |
| AACCTATGATAAACTTGATG+TGG | - | chr1_2:71398335-71398354 | None:intergenic | 30.0% | |
| ! | TTAAATCTTAGGGCTTTTGT+TGG | + | chr1_2:71398415-71398434 | Msa0089730:intron | 30.0% |
| !! | TTGGATTATTATTCGGGTTT+TGG | + | chr1_2:71398520-71398539 | Msa0089730:intron | 30.0% |
| !! | ATAAGAGTATTATCACCTAG+TGG | - | chr1_2:71398640-71398659 | None:intergenic | 30.0% |
| AGGTGATAATACTCTTATTC+TGG | + | chr1_2:71398642-71398661 | Msa0089730:CDS | 30.0% | |
| TGATAATACTCTTATTCTGG+CGG | + | chr1_2:71398645-71398664 | Msa0089730:CDS | 30.0% | |
| ATATTTCAGATCGGCATTAT+TGG | + | chr1_2:71398728-71398747 | Msa0089730:CDS | 30.0% | |
| TATTTCAGATCGGCATTATT+GGG | + | chr1_2:71398729-71398748 | Msa0089730:CDS | 30.0% | |
| AGAAAAATGATTATGAGCAG+AGG | - | chr1_2:71398772-71398791 | None:intergenic | 30.0% | |
| !! | CTGCTCATAATCATTTTTCT+AGG | + | chr1_2:71398772-71398791 | Msa0089730:intron | 30.0% |
| !! | AATCATTTTTCTAGGTTGGA+TGG | + | chr1_2:71398780-71398799 | Msa0089730:intron | 30.0% |
| TTATAGGAAATGTGATATGG+TGG | + | chr1_2:71398992-71399011 | Msa0089730:intron | 30.0% | |
| ATGTCAATTATGCAGCAATA+TGG | - | chr1_2:71399118-71399137 | None:intergenic | 30.0% | |
| ! | TCCAAATATTTAAGGCTAGA+GGG | + | chr1_2:71399204-71399223 | Msa0089730:intron | 30.0% |
| AAAGACAGAAAAACAGAGAA+GGG | - | chr1_2:71399238-71399257 | None:intergenic | 30.0% | |
| TAAAGACAGAAAAACAGAGA+AGG | - | chr1_2:71399239-71399258 | None:intergenic | 30.0% | |
| TAAAGATAGAAAGACAGAGA+AGG | - | chr1_2:71399366-71399385 | None:intergenic | 30.0% | |
| AAATGAGACAAACCATAAGA+CGG | - | chr1_2:71399565-71399584 | None:intergenic | 30.0% | |
| ! | CAGCTTTTTATCTTCTACTT+TGG | + | chr1_2:71399732-71399751 | Msa0089730:intron | 30.0% |
| TATATCTATGATGAAAGGAG+GGG | - | chr1_2:71399823-71399842 | None:intergenic | 30.0% | |
| ! | ATCTAATCACTCTGTTTTCA+TGG | + | chr1_2:71399853-71399872 | Msa0089730:intron | 30.0% |
| ! | ATGGTTAGTTATCACTTATC+AGG | + | chr1_2:71399872-71399891 | Msa0089730:intron | 30.0% |
| GAAAATCTATTTACATGTCG+TGG | + | chr1_2:71399916-71399935 | Msa0089730:intron | 30.0% | |
| TTCTGCTCAAGTTAAATTTC+TGG | + | chr1_2:71400034-71400053 | Msa0089730:intron | 30.0% | |
| TTCTGACGAATAAAACATTG+AGG | - | chr1_2:71400068-71400087 | None:intergenic | 30.0% | |
| !! | TGGTATTGATAAGTTGAATG+TGG | + | chr1_2:71400316-71400335 | Msa0089730:CDS | 30.0% |
| !! | GGAATTTTCATCTGTTGTTT+CGG | - | chr1_2:71400369-71400388 | None:intergenic | 30.0% |
| AGTTTAGCATCATACTATGA+TGG | - | chr1_2:71400467-71400486 | None:intergenic | 30.0% | |
| !!! | CTAAACTCTGCTTATTTTGT+AGG | + | chr1_2:71400480-71400499 | Msa0089730:intron | 30.0% |
| !!! | TTTTGCAGATTTGTTATCAC+TGG | + | chr1_2:71400795-71400814 | Msa0089730:intron | 30.0% |
| !!! | GTTCATTTCAGGTTTTGTTA+TGG | - | chr1_2:71400998-71401017 | None:intergenic | 30.0% |
| ! | CAATATAACTGGTTCATTTC+AGG | - | chr1_2:71401009-71401028 | None:intergenic | 30.0% |
| GGATCTCAATTCAATATAAC+TGG | - | chr1_2:71401020-71401039 | None:intergenic | 30.0% | |
| TACAATTTCTGATACTTGCA+TGG | + | chr1_2:71401132-71401151 | Msa0089730:CDS | 30.0% | |
| TCTCGAAATTGATTGTCAAA+GGG | - | chr1_2:71401388-71401407 | None:intergenic | 30.0% | |
| TTCTCGAAATTGATTGTCAA+AGG | - | chr1_2:71401389-71401408 | None:intergenic | 30.0% | |
| ATATATCAAGCTTTGCTAGA+TGG | + | chr1_2:71401478-71401497 | Msa0089730:intron | 30.0% | |
| ! | GTGAAAACCCATTTGAATTT+TGG | - | chr1_2:71401639-71401658 | None:intergenic | 30.0% |
| !! | CAAGTCAATGTTTTAAATGC+CGG | - | chr1_2:71401751-71401770 | None:intergenic | 30.0% |
| TGTACTATACTTGGTACTAA+AGG | + | chr1_2:71401801-71401820 | Msa0089730:intron | 30.0% | |
| ! | TTTTTACTCAGCTAACTGAT+CGG | - | chr1_2:71401874-71401893 | None:intergenic | 30.0% |
| TGACAAAATTGCAATTCTGA+AGG | - | chr1_2:71402157-71402176 | None:intergenic | 30.0% | |
| ! | TTCAGAATTGCAATTTTGTC+AGG | + | chr1_2:71402156-71402175 | Msa0089730:CDS | 30.0% |
| ! | TCAGAATTGCAATTTTGTCA+GGG | + | chr1_2:71402157-71402176 | Msa0089730:CDS | 30.0% |
| TTAAGGTAATGCTTTAATGG+AGG | - | chr1_2:71402215-71402234 | None:intergenic | 30.0% | |
| GAGTGCAGTAAAACAATAAT+AGG | - | chr1_2:71402470-71402489 | None:intergenic | 30.0% | |
| ACTGCACTCTATATACTAAA+AGG | + | chr1_2:71402481-71402500 | Msa0089730:three_prime_UTR | 30.0% | |
| ATACTAAAAGGAAGAAACCA+AGG | + | chr1_2:71402493-71402512 | Msa0089730:three_prime_UTR | 30.0% | |
| TATAAAAGTCACATGGGTGT+GGG | - | chr1_2:71398038-71398057 | None:intergenic | 35.0% | |
| TTATAAAAGTCACATGGGTG+TGG | - | chr1_2:71398039-71398058 | None:intergenic | 35.0% | |
| TGGGTTCATAGAGTCTAAAA+TGG | + | chr1_2:71398165-71398184 | Msa0089730:five_prime_UTR | 35.0% | |
| GAAAAACGAAAACCCATTGA+AGG | - | chr1_2:71398241-71398260 | None:intergenic | 35.0% | |
| CACCACATCAAGTTTATCAT+AGG | + | chr1_2:71398330-71398349 | Msa0089730:CDS | 35.0% | |
| !!! | TTTGATTCCACTTTTTCAGG+AGG | + | chr1_2:71398553-71398572 | Msa0089730:intron | 35.0% |
| GCAAAATGAAGTTACACAAG+TGG | + | chr1_2:71398600-71398619 | Msa0089730:CDS | 35.0% | |
| TCGAAGAAAATCAGGTCTAT+TGG | - | chr1_2:71398680-71398699 | None:intergenic | 35.0% | |
| ! | AATAGACCTGATTTTCTTCG+AGG | + | chr1_2:71398679-71398698 | Msa0089730:CDS | 35.0% |
| TGAAATCCTCGAAGAAAATC+AGG | - | chr1_2:71398688-71398707 | None:intergenic | 35.0% | |
| ACAAATCTATGACATCATGC+TGG | - | chr1_2:71398854-71398873 | None:intergenic | 35.0% | |
| TTCTCTGTGCAATGAAATCA+TGG | + | chr1_2:71399092-71399111 | Msa0089730:intron | 35.0% | |
| ! | TTGCTTATATTTAAGGCCGA+GGG | - | chr1_2:71399165-71399184 | None:intergenic | 35.0% |
| ! | TTTGCTTATATTTAAGGCCG+AGG | - | chr1_2:71399166-71399185 | None:intergenic | 35.0% |
| ! | GTCCAAATATTTAAGGCTAG+AGG | + | chr1_2:71399203-71399222 | Msa0089730:intron | 35.0% |
| !! | TCCCTCTAGCCTTAAATATT+TGG | - | chr1_2:71399208-71399227 | None:intergenic | 35.0% |
| ! | TCCAAGTATTTAAGGCTAGA+GGG | + | chr1_2:71399332-71399351 | Msa0089730:intron | 35.0% |
| CTGTTATATTTGCAGTCAGT+TGG | + | chr1_2:71399510-71399529 | Msa0089730:intron | 35.0% | |
| ! | GTCTTATGGTTTGTCTCATT+TGG | + | chr1_2:71399564-71399583 | Msa0089730:CDS | 35.0% |
| GGGATTAACATAAAGGACAA+AGG | + | chr1_2:71399621-71399640 | Msa0089730:CDS | 35.0% | |
| ACAAATCCTTTGTGAACGAT+TGG | - | chr1_2:71399649-71399668 | None:intergenic | 35.0% | |
| ATATCTATGATGAAAGGAGG+GGG | - | chr1_2:71399822-71399841 | None:intergenic | 35.0% | |
| TTTCCATGACTGAATTGCAA+AGG | + | chr1_2:71399953-71399972 | Msa0089730:intron | 35.0% | |
| GATGTATTCTCCTTTCTGTT+GGG | + | chr1_2:71400138-71400157 | Msa0089730:CDS | 35.0% | |
| !! | AAAAAAATGGAGGGTATCCA+AGG | - | chr1_2:71400186-71400205 | None:intergenic | 35.0% |
| ! | GACGTTTATGGTTTTTGCAA+GGG | - | chr1_2:71400264-71400283 | None:intergenic | 35.0% |
| ! | TGACGTTTATGGTTTTTGCA+AGG | - | chr1_2:71400265-71400284 | None:intergenic | 35.0% |
| AAGTATCTGGTTGACGTTTA+TGG | - | chr1_2:71400276-71400295 | None:intergenic | 35.0% | |
| TCAACTTATCAATACCATCC+AGG | - | chr1_2:71400313-71400332 | None:intergenic | 35.0% | |
| TATGCAGAATTTAGAGGTCA+AGG | - | chr1_2:71400437-71400456 | None:intergenic | 35.0% | |
| !!! | ATTTTTCTCTTGGCTCTAAC+TGG | + | chr1_2:71400533-71400552 | Msa0089730:CDS | 35.0% |
| TGATTGCATGTTGATATCCA+AGG | - | chr1_2:71400675-71400694 | None:intergenic | 35.0% | |
| AAAGGATCATTCAGATAGCT+AGG | - | chr1_2:71400743-71400762 | None:intergenic | 35.0% | |
| TAAAAGGGTAAATGGCCAAA+GGG | - | chr1_2:71400950-71400969 | None:intergenic | 35.0% | |
| TGCAAACGTAAATGCAACAA+AGG | + | chr1_2:71401309-71401328 | Msa0089730:CDS | 35.0% | |
| GCAAACGTAAATGCAACAAA+GGG | + | chr1_2:71401310-71401329 | Msa0089730:CDS | 35.0% | |
| ! | CAGGTTTTTACAATCAGTCT+GGG | + | chr1_2:71401338-71401357 | Msa0089730:CDS | 35.0% |
| ! | CTTTGCTAGATGGTGATTTT+TGG | + | chr1_2:71401488-71401507 | Msa0089730:intron | 35.0% |
| ! | CACACATACTCAAGTTTGTT+GGG | - | chr1_2:71401541-71401560 | None:intergenic | 35.0% |
| ACACACATACTCAAGTTTGT+TGG | - | chr1_2:71401542-71401561 | None:intergenic | 35.0% | |
| ! | AGTGATTGGTTGATCCAAAT+AGG | + | chr1_2:71401605-71401624 | Msa0089730:intron | 35.0% |
| ! | GTGATTGGTTGATCCAAATA+GGG | + | chr1_2:71401606-71401625 | Msa0089730:intron | 35.0% |
| CCTTCAGCCAAAATTCAAAT+GGG | + | chr1_2:71401629-71401648 | Msa0089730:intron | 35.0% | |
| ! | GTTTTCACTTGTATTCAACC+AGG | + | chr1_2:71401651-71401670 | Msa0089730:intron | 35.0% |
| !! | TCAATGTTTTAAATGCCGGT+AGG | - | chr1_2:71401747-71401766 | None:intergenic | 35.0% |
| TTGACTCAGTGTACTATACT+TGG | + | chr1_2:71401792-71401811 | Msa0089730:intron | 35.0% | |
| TAACTGCAAGTAAATCTCTG+GGG | - | chr1_2:71402078-71402097 | None:intergenic | 35.0% | |
| CTAACTGCAAGTAAATCTCT+GGG | - | chr1_2:71402079-71402098 | None:intergenic | 35.0% | |
| ! | TTCTGAAGGCTAAGTAAAAG+TGG | - | chr1_2:71402143-71402162 | None:intergenic | 35.0% |
| ! | CATAGAGTATCCATAGAACA+AGG | - | chr1_2:71402286-71402305 | None:intergenic | 35.0% |
| AATTTAGCATTGCCAAATGC+AGG | + | chr1_2:71402395-71402414 | Msa0089730:CDS | 35.0% | |
| ! | TTGCTATTGTCTATGAACTC+AGG | - | chr1_2:71402535-71402554 | None:intergenic | 35.0% |
| ATAAAAGTCACATGGGTGTG+GGG | - | chr1_2:71398037-71398056 | None:intergenic | 40.0% | |
| GTTGCAAGAATCCACAATGA+AGG | + | chr1_2:71398209-71398228 | Msa0089730:exon | 40.0% | |
| ATGAAGGCTCATTCCTTCAA+TGG | + | chr1_2:71398225-71398244 | Msa0089730:CDS | 40.0% | |
| TGAAGGCTCATTCCTTCAAT+GGG | + | chr1_2:71398226-71398245 | Msa0089730:CDS | 40.0% | |
| !!! | GTGATTTTCTGTGATGGGTT+TGG | + | chr1_2:71398382-71398401 | Msa0089730:intron | 40.0% |
| ! | AATCTTAGGGCTTTTGTTGG+TGG | + | chr1_2:71398418-71398437 | Msa0089730:intron | 40.0% |
| ! | ATCTTAGGGCTTTTGTTGGT+GGG | + | chr1_2:71398419-71398438 | Msa0089730:intron | 40.0% |
| GAGGAGTGAATATAGGTTCA+TGG | + | chr1_2:71398578-71398597 | Msa0089730:CDS | 40.0% | |
| CGAGGATTTCATCGTTATCA+CGG | + | chr1_2:71398697-71398716 | Msa0089730:CDS | 40.0% | |
| GTGGTTGGGATATTTCAGAT+CGG | + | chr1_2:71398719-71398738 | Msa0089730:CDS | 40.0% | |
| TTATTGGGCTGTAAGTGCTT+TGG | + | chr1_2:71398744-71398763 | Msa0089730:intron | 40.0% | |
| AGATCCTTGCTGCATTTAAG+TGG | + | chr1_2:71398894-71398913 | Msa0089730:intron | 40.0% | |
| GATCCTTGCTGCATTTAAGT+GGG | + | chr1_2:71398895-71398914 | Msa0089730:intron | 40.0% | |
| TTTCCCACTTAAATGCAGCA+AGG | - | chr1_2:71398901-71398920 | None:intergenic | 40.0% | |
| TGCTGCATTTAAGTGGGAAA+TGG | + | chr1_2:71398901-71398920 | Msa0089730:intron | 40.0% | |
| TGCACAGAGAACAACAATGA+TGG | - | chr1_2:71399083-71399102 | None:intergenic | 40.0% | |
| TGAAGATGTACATACTCCCT+CGG | + | chr1_2:71399146-71399165 | Msa0089730:intron | 40.0% | |
| ! | GTCCAAGTATTTAAGGCTAG+AGG | + | chr1_2:71399331-71399350 | Msa0089730:intron | 40.0% |
| !! | TCCCTCTAGCCTTAAATACT+TGG | - | chr1_2:71399336-71399355 | None:intergenic | 40.0% |
| TTGTTGTCGAGTGAGAAGAT+TGG | + | chr1_2:71399467-71399486 | Msa0089730:intron | 40.0% | |
| GTTTCATTCTTGCCGTCTTA+TGG | + | chr1_2:71399550-71399569 | Msa0089730:CDS | 40.0% | |
| ! | ATGGTTTGTCTCATTTGGCT+TGG | + | chr1_2:71399569-71399588 | Msa0089730:CDS | 40.0% |
| CTTGTGATTCATCTATGCTG+TGG | + | chr1_2:71399594-71399613 | Msa0089730:CDS | 40.0% | |
| TGATTCATCTATGCTGTGGA+TGG | + | chr1_2:71399598-71399617 | Msa0089730:CDS | 40.0% | |
| GATTCATCTATGCTGTGGAT+GGG | + | chr1_2:71399599-71399618 | Msa0089730:CDS | 40.0% | |
| ATTCATCTATGCTGTGGATG+GGG | + | chr1_2:71399600-71399619 | Msa0089730:CDS | 40.0% | |
| TGGATGGGGGATTAACATAA+AGG | + | chr1_2:71399614-71399633 | Msa0089730:CDS | 40.0% | |
| AAGGATCCAATCGTTCACAA+AGG | + | chr1_2:71399640-71399659 | Msa0089730:CDS | 40.0% | |
| AAAGTCTTACGATGCAGCAA+AGG | - | chr1_2:71399694-71399713 | None:intergenic | 40.0% | |
| TATCTATGATGAAAGGAGGG+GGG | - | chr1_2:71399821-71399840 | None:intergenic | 40.0% | |
| CATCCTTTGCAATTCAGTCA+TGG | - | chr1_2:71399959-71399978 | None:intergenic | 40.0% | |
| TTGCAATCTCTCAATCACAC+AGG | + | chr1_2:71400111-71400130 | Msa0089730:intron | 40.0% | |
| GGATGTATTCTCCTTTCTGT+TGG | + | chr1_2:71400137-71400156 | Msa0089730:CDS | 40.0% | |
| !! | CATCAGATGGAAGAAGTATC+TGG | - | chr1_2:71400289-71400308 | None:intergenic | 40.0% |
| TGTGGAACTAAATACTGCAG+CGG | + | chr1_2:71400334-71400353 | Msa0089730:CDS | 40.0% | |
| TACTCCTGCCATAACAAACA+AGG | - | chr1_2:71400513-71400532 | None:intergenic | 40.0% | |
| ! | GGCAGGAGTAATTTTTCTCT+TGG | + | chr1_2:71400523-71400542 | Msa0089730:CDS | 40.0% |
| !! | GCAGATTTGTTATCACTGGA+TGG | + | chr1_2:71400799-71400818 | Msa0089730:intron | 40.0% |
| TGTTATCACTGGATGGTTAC+TGG | + | chr1_2:71400806-71400825 | Msa0089730:CDS | 40.0% | |
| GCAACCACATTCATTCTTTG+CGG | + | chr1_2:71400831-71400850 | Msa0089730:CDS | 40.0% | |
| !!! | TTCGTTTTTTTGGCTCCCTT+TGG | + | chr1_2:71400932-71400951 | Msa0089730:intron | 40.0% |
| GTAAAAGGGTAAATGGCCAA+AGG | - | chr1_2:71400951-71400970 | None:intergenic | 40.0% | |
| TTCTGATACTTGCATGGCTA+TGG | + | chr1_2:71401138-71401157 | Msa0089730:CDS | 40.0% | |
| TCTGATACTTGCATGGCTAT+GGG | + | chr1_2:71401139-71401158 | Msa0089730:CDS | 40.0% | |
| TTCTTTGATCAACGCATGGA+AGG | - | chr1_2:71401210-71401229 | None:intergenic | 40.0% | |
| CCAGACTGATTGTAAAAACC+TGG | - | chr1_2:71401340-71401359 | None:intergenic | 40.0% | |
| ! | CCAGGTTTTTACAATCAGTC+TGG | + | chr1_2:71401337-71401356 | Msa0089730:CDS | 40.0% |
| TTGTCAAAGGGATAGCATAG+TGG | - | chr1_2:71401376-71401395 | None:intergenic | 40.0% | |
| TTCATCTGCCAATGCTTCAA+TGG | + | chr1_2:71401432-71401451 | Msa0089730:CDS | 40.0% | |
| !!! | GCTAGATGGTGATTTTTGGT+AGG | + | chr1_2:71401492-71401511 | Msa0089730:intron | 40.0% |
| !! | CATACTCAAGTTTGTTGGGA+TGG | - | chr1_2:71401537-71401556 | None:intergenic | 40.0% |
| GCCTTCAGCCAAAATTCAAA+TGG | + | chr1_2:71401628-71401647 | Msa0089730:intron | 40.0% | |
| !!! | CCCATTTGAATTTTGGCTGA+AGG | - | chr1_2:71401632-71401651 | None:intergenic | 40.0% |
| ACTAACCACCATGCAACATT+CGG | - | chr1_2:71401681-71401700 | None:intergenic | 40.0% | |
| TTCGGTCTGTGAATCGTAAA+AGG | + | chr1_2:71401951-71401970 | Msa0089730:intron | 40.0% | |
| TTGGGAGAATTATGTATGCG+AGG | + | chr1_2:71402013-71402032 | Msa0089730:CDS | 40.0% | |
| TCAGGTATTTGCACTACAGT+TGG | + | chr1_2:71402044-71402063 | Msa0089730:CDS | 40.0% | |
| TATTTGCACTACAGTTGGCA+GGG | + | chr1_2:71402049-71402068 | Msa0089730:CDS | 40.0% | |
| GCTAACTGCAAGTAAATCTC+TGG | - | chr1_2:71402080-71402099 | None:intergenic | 40.0% | |
| ! | TTCTGCTTTGCCTTGTTCTA+TGG | + | chr1_2:71402273-71402292 | Msa0089730:CDS | 40.0% |
| ATGCTAAATTTGTGCTCTGG+TGG | - | chr1_2:71402385-71402404 | None:intergenic | 40.0% | |
| GCAATGCTAAATTTGTGCTC+TGG | - | chr1_2:71402388-71402407 | None:intergenic | 40.0% | |
| CTAAAAGGAAGAAACCAAGG+TGG | + | chr1_2:71402496-71402515 | Msa0089730:three_prime_UTR | 40.0% | |
| CTATTGTCTATGAACTCAGG+CGG | - | chr1_2:71402532-71402551 | None:intergenic | 40.0% | |
| GAAGGAATGAGCCTTCATTG+TGG | - | chr1_2:71398223-71398242 | None:intergenic | 45.0% | |
| !!! | TCCACTTTTTCAGGAGGAAG+AGG | + | chr1_2:71398559-71398578 | Msa0089730:intron | 45.0% |
| TCCTCTTCCTCCTGAAAAAG+TGG | - | chr1_2:71398563-71398582 | None:intergenic | 45.0% | |
| GGAGGAAGAGGAGTGAATAT+AGG | + | chr1_2:71398571-71398590 | Msa0089730:intron | 45.0% | |
| CTCTTATTCTGGCGGCAAAT+AGG | + | chr1_2:71398653-71398672 | Msa0089730:CDS | 45.0% | |
| GGATTTCATCGTTATCACGG+TGG | + | chr1_2:71398700-71398719 | Msa0089730:CDS | 45.0% | |
| TTCATCGTTATCACGGTGGT+TGG | + | chr1_2:71398704-71398723 | Msa0089730:CDS | 45.0% | |
| TCATCGTTATCACGGTGGTT+GGG | + | chr1_2:71398705-71398724 | Msa0089730:CDS | 45.0% | |
| TTGCAGTCAGTTGGATTCAC+CGG | + | chr1_2:71399519-71399538 | Msa0089730:intron | 45.0% | |
| TTCATCTATGCTGTGGATGG+GGG | + | chr1_2:71399601-71399620 | Msa0089730:CDS | 45.0% | |
| ATCTATGATGAAAGGAGGGG+GGG | - | chr1_2:71399820-71399839 | None:intergenic | 45.0% | |
| ATCTCTCAATCACACAGGAC+TGG | + | chr1_2:71400116-71400135 | Msa0089730:intron | 45.0% | |
| TATTCTCCTTTCTGTTGGGC+AGG | + | chr1_2:71400142-71400161 | Msa0089730:CDS | 45.0% | |
| ACTTATCCTGCCCAACAGAA+AGG | - | chr1_2:71400151-71400170 | None:intergenic | 45.0% | |
| GTTGGGCAGGATAAGTTTCA+CGG | + | chr1_2:71400155-71400174 | Msa0089730:CDS | 45.0% | |
| ! | GCAGACTCTGAGAAATGTCA+CGG | + | chr1_2:71400229-71400248 | Msa0089730:CDS | 45.0% |
| ACTTCTTCCATCTGATGTCC+TGG | + | chr1_2:71400292-71400311 | Msa0089730:CDS | 45.0% | |
| ATACCATCCAGGACATCAGA+TGG | - | chr1_2:71400302-71400321 | None:intergenic | 45.0% | |
| !!! | CTGCTTATTTTGTAGGCGCA+CGG | + | chr1_2:71400487-71400506 | Msa0089730:intron | 45.0% |
| GTTGATATCCAAGGAGAGAC+AGG | - | chr1_2:71400666-71400685 | None:intergenic | 45.0% | |
| CAGATAGCTAGGCATAGCAA+AGG | - | chr1_2:71400732-71400751 | None:intergenic | 45.0% | |
| CACTCCGCAAAGAATGAATG+TGG | - | chr1_2:71400838-71400857 | None:intergenic | 45.0% | |
| TTGCATGGCTATGGGAGAAT+GGG | + | chr1_2:71401147-71401166 | Msa0089730:CDS | 45.0% | |
| CTAAGAGCAGATTCTCTGTG+TGG | - | chr1_2:71401181-71401200 | None:intergenic | 45.0% | |
| GTGGTTCTTTGATCAACGCA+TGG | - | chr1_2:71401214-71401233 | None:intergenic | 45.0% | |
| AATGCAACAAAGGGTCATCC+AGG | + | chr1_2:71401319-71401338 | Msa0089730:CDS | 45.0% | |
| TCAAAGGGATAGCATAGTGG+CGG | - | chr1_2:71401373-71401392 | None:intergenic | 45.0% | |
| !! | ACTCAAGTTTGTTGGGATGG+CGG | - | chr1_2:71401534-71401553 | None:intergenic | 45.0% |
| !! | TTTTGGCTGAAGGCCCTATT+TGG | - | chr1_2:71401622-71401641 | None:intergenic | 45.0% |
| GTGTGTTAGACATGACCTAC+CGG | + | chr1_2:71401729-71401748 | Msa0089730:intron | 45.0% | |
| GGTCTGTGAATCGTAAAAGG+AGG | + | chr1_2:71401954-71401973 | Msa0089730:intron | 45.0% | |
| ! | GTATGCGAGGTATCTGAATC+AGG | + | chr1_2:71402026-71402045 | Msa0089730:CDS | 45.0% |
| GTATTTGCACTACAGTTGGC+AGG | + | chr1_2:71402048-71402067 | Msa0089730:CDS | 45.0% | |
| TTTGTCAGGGATGCATTCAC+AGG | + | chr1_2:71402170-71402189 | Msa0089730:CDS | 45.0% | |
| GCAGAACACCAACTGAAATG+AGG | - | chr1_2:71402259-71402278 | None:intergenic | 45.0% | |
| ACAAACACTTCTCCCCTTTG+GGG | - | chr1_2:71402317-71402336 | None:intergenic | 45.0% | |
| CACAAACACTTCTCCCCTTT+GGG | - | chr1_2:71402318-71402337 | None:intergenic | 45.0% | |
| TCACAAACACTTCTCCCCTT+TGG | - | chr1_2:71402319-71402338 | None:intergenic | 45.0% | |
| TAGACTTCACTGCCTGCATT+TGG | - | chr1_2:71402410-71402429 | None:intergenic | 45.0% | |
| !! | TCTAAAAAATAAATAAAAAA+AGG | - | chr1_2:71400761-71400780 | None:intergenic | 5.0% |
| GTATTATCACCTAGTGGCCC+TGG | - | chr1_2:71398634-71398653 | None:intergenic | 50.0% | |
| AAGAATGAAACCCGTGGCAC+CGG | - | chr1_2:71399541-71399560 | None:intergenic | 50.0% | |
| TCTATGATGAAAGGAGGGGG+GGG | - | chr1_2:71399819-71399838 | None:intergenic | 50.0% | |
| CTTCCATCTGATGTCCTGGA+TGG | + | chr1_2:71400296-71400315 | Msa0089730:CDS | 50.0% | |
| !! | ACGGCCTTGTTTGTTATGGC+AGG | + | chr1_2:71400506-71400525 | Msa0089730:CDS | 50.0% |
| !! | CTCTTGGCTCTAACTGGACT+AGG | + | chr1_2:71400539-71400558 | Msa0089730:CDS | 50.0% |
| CTTGCATGGCTATGGGAGAA+TGG | + | chr1_2:71401146-71401165 | Msa0089730:CDS | 50.0% | |
| !! | TCAAGTTTGTTGGGATGGCG+GGG | - | chr1_2:71401532-71401551 | None:intergenic | 50.0% |
| !! | CTCAAGTTTGTTGGGATGGC+GGG | - | chr1_2:71401533-71401552 | None:intergenic | 50.0% |
| CATGCAACATTCGGTTCACC+TGG | - | chr1_2:71401672-71401691 | None:intergenic | 50.0% | |
| CAGGTGAACCGAATGTTGCA+TGG | + | chr1_2:71401670-71401689 | Msa0089730:intron | 50.0% | |
| GTGAACCGAATGTTGCATGG+TGG | + | chr1_2:71401673-71401692 | Msa0089730:intron | 50.0% | |
| GGACTTGGCCTCATTTCAGT+TGG | + | chr1_2:71402248-71402267 | Msa0089730:CDS | 50.0% | |
| CAAACACTTCTCCCCTTTGG+GGG | - | chr1_2:71402316-71402335 | None:intergenic | 50.0% | |
| AAAGTCACATGGGTGTGGGG+TGG | - | chr1_2:71398034-71398053 | None:intergenic | 55.0% | |
| ! | AGTTGGATTCACCGGTGCCA+CGG | + | chr1_2:71399527-71399546 | Msa0089730:CDS | 55.0% |
| GACGGCAAGAATGAAACCCG+TGG | - | chr1_2:71399547-71399566 | None:intergenic | 55.0% | |
| TATGATGAAAGGAGGGGGGG+GGG | - | chr1_2:71399817-71399836 | None:intergenic | 55.0% | |
| CTATGATGAAAGGAGGGGGG+GGG | - | chr1_2:71399818-71399837 | None:intergenic | 55.0% | |
| GCAGGATAAGTTTCACGGCG+AGG | + | chr1_2:71400160-71400179 | Msa0089730:CDS | 55.0% | |
| TAAGTTTCACGGCGAGGCCT+TGG | + | chr1_2:71400166-71400185 | Msa0089730:CDS | 55.0% | |
| !! | GCGCACGGCCTTGTTTGTTA+TGG | + | chr1_2:71400502-71400521 | Msa0089730:CDS | 55.0% |
| CATGGCTATGGGAGAATGGG+TGG | + | chr1_2:71401150-71401169 | Msa0089730:CDS | 55.0% | |
| ! | TAGCATAGTGGCGGCATTGG+AGG | - | chr1_2:71401364-71401383 | None:intergenic | 55.0% |
| GGATAGCATAGTGGCGGCAT+TGG | - | chr1_2:71401367-71401386 | None:intergenic | 55.0% | |
| ACACAAGTGGCTCCAGCACC+AGG | + | chr1_2:71398613-71398632 | Msa0089730:CDS | 60.0% | |
| CACAAGTGGCTCCAGCACCA+GGG | + | chr1_2:71398614-71398633 | Msa0089730:CDS | 60.0% | |
| !! | GTTGGATTCACCGGTGCCAC+GGG | + | chr1_2:71399528-71399547 | Msa0089730:CDS | 60.0% |
| ATGATGAAAGGAGGGGGGGG+GGG | - | chr1_2:71399816-71399835 | None:intergenic | 60.0% | |
| TCGGCAGTCCTGTCTCTCCT+TGG | + | chr1_2:71400655-71400674 | Msa0089730:intron | 60.0% | |
| !! | GTTTGTTGGGATGGCGGGGA+GGG | - | chr1_2:71401528-71401547 | None:intergenic | 60.0% |
| !! | AGTTTGTTGGGATGGCGGGG+AGG | - | chr1_2:71401529-71401548 | None:intergenic | 60.0% |
| TCTATGCGAACCGCCCCCAA+AGG | + | chr1_2:71402300-71402319 | Msa0089730:CDS | 60.0% | |
| CTATGCGAACCGCCCCCAAA+GGG | + | chr1_2:71402301-71402320 | Msa0089730:CDS | 60.0% | |
| TATGCGAACCGCCCCCAAAG+GGG | + | chr1_2:71402302-71402321 | Msa0089730:CDS | 60.0% | |
| ! | ACACTTCTCCCCTTTGGGGG+CGG | - | chr1_2:71402313-71402332 | None:intergenic | 60.0% |
| TCACCTAGTGGCCCTGGTGC+TGG | - | chr1_2:71398628-71398647 | None:intergenic | 65.0% | |
| TGATGAAAGGAGGGGGGGGG+GGG | - | chr1_2:71399815-71399834 | None:intergenic | 65.0% | |
| GCTCCAGCACCAGGGCCACT+AGG | + | chr1_2:71398622-71398641 | Msa0089730:CDS | 70.0% | |
| GATGAAAGGAGGGGGGGGGG+GGG | - | chr1_2:71399814-71399833 | None:intergenic | 70.0% | |
| !! | TTGGGATGGCGGGGAGGGAG+GGG | - | chr1_2:71401523-71401542 | None:intergenic | 70.0% |
| !! | GTTGGGATGGCGGGGAGGGA+GGG | - | chr1_2:71401524-71401543 | None:intergenic | 70.0% |
| !! | TGTTGGGATGGCGGGGAGGG+AGG | - | chr1_2:71401525-71401544 | None:intergenic | 70.0% |
| GCGGCAGCTTCGCTCCACCT+TGG | - | chr1_2:71402513-71402532 | None:intergenic | 70.0% | |
| !! | TGGGATGGCGGGGAGGGAGG+GGG | - | chr1_2:71401522-71401541 | None:intergenic | 75.0% |
| !!! | GGGATGGCGGGGAGGGAGGG+GGG | - | chr1_2:71401521-71401540 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 71397858 | 71402650 | 71397858 | ID=Msa0089730;Name=Msa0089730 |
| chr1_2 | mRNA | 71397858 | 71402650 | 71397858 | ID=Msa0089730-mRNA-1;Parent=Msa0089730;Name=Msa0089730-mRNA-1;_AED=0.07;_eAED=0.07;_QI=367|1|1|1|1|1|9|220|560 |
| chr1_2 | exon | 71397858 | 71398351 | 71397858 | ID=Msa0089730-mRNA-1:exon:24615;Parent=Msa0089730-mRNA-1 |
| chr1_2 | exon | 71398572 | 71398753 | 71398572 | ID=Msa0089730-mRNA-1:exon:24616;Parent=Msa0089730-mRNA-1 |
| chr1_2 | exon | 71399525 | 71399703 | 71399525 | ID=Msa0089730-mRNA-1:exon:24617;Parent=Msa0089730-mRNA-1 |
| chr1_2 | exon | 71400133 | 71400417 | 71400133 | ID=Msa0089730-mRNA-1:exon:24618;Parent=Msa0089730-mRNA-1 |
| chr1_2 | exon | 71400502 | 71400560 | 71400502 | ID=Msa0089730-mRNA-1:exon:24619;Parent=Msa0089730-mRNA-1 |
| chr1_2 | exon | 71400662 | 71400698 | 71400662 | ID=Msa0089730-mRNA-1:exon:24620;Parent=Msa0089730-mRNA-1 |
| chr1_2 | exon | 71400803 | 71400874 | 71400803 | ID=Msa0089730-mRNA-1:exon:24621;Parent=Msa0089730-mRNA-1 |
| chr1_2 | exon | 71401132 | 71401453 | 71401132 | ID=Msa0089730-mRNA-1:exon:24622;Parent=Msa0089730-mRNA-1 |
| chr1_2 | exon | 71402011 | 71402650 | 71402011 | ID=Msa0089730-mRNA-1:exon:24623;Parent=Msa0089730-mRNA-1 |
| chr1_2 | five_prime_UTR | 71397858 | 71398224 | 71397858 | ID=Msa0089730-mRNA-1:five_prime_utr;Parent=Msa0089730-mRNA-1 |
| chr1_2 | CDS | 71398225 | 71398351 | 71398225 | ID=Msa0089730-mRNA-1:cds;Parent=Msa0089730-mRNA-1 |
| chr1_2 | CDS | 71398572 | 71398753 | 71398572 | ID=Msa0089730-mRNA-1:cds;Parent=Msa0089730-mRNA-1 |
| chr1_2 | CDS | 71399525 | 71399703 | 71399525 | ID=Msa0089730-mRNA-1:cds;Parent=Msa0089730-mRNA-1 |
| chr1_2 | CDS | 71400133 | 71400417 | 71400133 | ID=Msa0089730-mRNA-1:cds;Parent=Msa0089730-mRNA-1 |
| chr1_2 | CDS | 71400502 | 71400560 | 71400502 | ID=Msa0089730-mRNA-1:cds;Parent=Msa0089730-mRNA-1 |
| chr1_2 | CDS | 71400662 | 71400698 | 71400662 | ID=Msa0089730-mRNA-1:cds;Parent=Msa0089730-mRNA-1 |
| chr1_2 | CDS | 71400803 | 71400874 | 71400803 | ID=Msa0089730-mRNA-1:cds;Parent=Msa0089730-mRNA-1 |
| chr1_2 | CDS | 71401132 | 71401453 | 71401132 | ID=Msa0089730-mRNA-1:cds;Parent=Msa0089730-mRNA-1 |
| chr1_2 | CDS | 71402011 | 71402430 | 71402011 | ID=Msa0089730-mRNA-1:cds;Parent=Msa0089730-mRNA-1 |
| chr1_2 | three_prime_UTR | 71402431 | 71402650 | 71402431 | ID=Msa0089730-mRNA-1:three_prime_utr;Parent=Msa0089730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
