AlfalfaGEDB | Msa0179160

M. sativa cultivar zhongmu-4 / Msa0179160

KEGG: K02980|K20308
GO: GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0012505 GO:0015031 GO:0015833 GO:0015935 GO:0016020 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0022626 GO:0022627 GO:0030867 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042175 GO:0042788 GO:0042886 GO:0042981 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
PFAM: PF00253.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0179160	XP_023772684.2	100.000	56	0	0	1	56	31	86	1.46e-34	122

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0179160	sp\|Q680P8\|RS29_ARATH	92.857	56	4	0	1	56	1	56	6.73e-33	109

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0179160	A0A6S7LBD4	96.429	56	2	0	1	56	88	143	3.48e-34	122

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0136220	Msa0179160	0.807511	4.877769e-50	-8.615850e-47
Msa0179160	Msa0373350	0.841336	5.054393e-58	-8.615850e-47
Msa0179160	Msa0388520	0.804590	2.007911e-49	-8.615850e-47
Msa0179160	Msa1130680	0.808556	2.922220e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
Msa0179160	MtrunA17_Chr3g0143891	100.000	56	1	56	1	56	7.63e-38	119
Msa0179160	MtrunA17_Chr5g0393701	100.000	56	1	56	1	56	7.63e-38	119
Msa0179160	MtrunA17_Chr1g0207501	100.000	56	1	56	1	56	7.63e-38	119

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0179160	AT3G44010.1	92.857	56	4	1	56	1	56	6.84e-34	109
Msa0179160	AT3G44010.2	92.857	56	4	1	56	1	56	6.84e-34	109
Msa0179160	AT3G43980.1	92.857	56	4	1	56	1	56	6.84e-34	109
Msa0179160	AT4G33865.1	92.857	56	4	1	56	1	56	6.84e-34	109

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Find 56 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAGGACCATAGGTCTTG+GGG	0.597207	1_4:-66590782	None:intergenic
AACTCTCACCCCAAGACCTA+TGG	0.505813	1_4:+66590774	Msa0179160:CDS
AAGAATGAATATACCAAGTG+CGG	0.579658	1_4:-66590806	None:intergenic
AAGGCCATGGTATACAGATT+GGG	0.453002	1_4:+66591860	Msa0179160:three_prime_UTR
AGAATGAATATACCAAGTGC+GGG	0.603783	1_4:-66590805	None:intergenic
AGACTCAAATGCTCTGCAGC+TGG	0.485140	1_4:-66590706	None:intergenic
AGCAAGGAAGTCATAGTAAA+AGG	0.306874	1_4:-66591756	None:intergenic
AGCATTGCCTGCAGCACATA+AGG	0.453112	1_4:-66591435	None:intergenic
AGTATGGCCTTATGTGCTGC+AGG	0.540472	1_4:+66591428	Msa0179160:CDS
AGTGCGGGAACCAGGACCAT+AGG	0.585453	1_4:-66590790	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATGAATATACCAAGTG+CGG	-	chr1_4:66590809-66590828	None:intergenic	30.0%
ATAACATCAGCTGATATCAA+AGG	-	chr1_4:66591069-66591088	None:intergenic	30.0%
TCTGAACATATGTAGTTTAG+TGG	+	chr1_4:66591180-66591199	Msa0179160:intron	30.0%
CAAAGAAAATAGCTCTTCAA+CGG	-	chr1_4:66591583-66591602	None:intergenic	30.0%
AAGAATGAATATACCAAGTG+CGG	-	chr1_4:66590809-66590828	None:intergenic	30.0%
ATAACATCAGCTGATATCAA+AGG	-	chr1_4:66591069-66591088	None:intergenic	30.0%
TCTGAACATATGTAGTTTAG+TGG	+	chr1_4:66591180-66591199	Msa0179160:intron	30.0%
CAAAGAAAATAGCTCTTCAA+CGG	-	chr1_4:66591583-66591602	None:intergenic	30.0%
CGATCAAATCAACAAACCAT+GGG	+	chr1_4:66590735-66590754	Msa0179160:exon	35.0%
AGAATGAATATACCAAGTGC+GGG	-	chr1_4:66590808-66590827	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	66590600	66592089	66590600	ID=Msa0179160;Name=Msa0179160
chr1_4	mRNA	66590600	66592089	66590600	ID=Msa0179160-mRNA-1;Parent=Msa0179160;Name=Msa0179160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=153\|1\|1\|1\|0.5\|0.66\|3\|503\|56
chr1_4	exon	66590600	66590814	66590600	ID=Msa0179160-mRNA-1:exon:21819;Parent=Msa0179160-mRNA-1
chr1_4	exon	66591393	66591492	66591393	ID=Msa0179160-mRNA-1:exon:21820;Parent=Msa0179160-mRNA-1
chr1_4	exon	66591578	66592089	66591578	ID=Msa0179160-mRNA-1:exon:21821;Parent=Msa0179160-mRNA-1
chr1_4	five_prime_UTR	66590600	66590752	66590600	ID=Msa0179160-mRNA-1:five_prime_utr;Parent=Msa0179160-mRNA-1
chr1_4	CDS	66590753	66590814	66590753	ID=Msa0179160-mRNA-1:cds;Parent=Msa0179160-mRNA-1
chr1_4	CDS	66591393	66591492	66591393	ID=Msa0179160-mRNA-1:cds;Parent=Msa0179160-mRNA-1
chr1_4	CDS	66591578	66591586	66591578	ID=Msa0179160-mRNA-1:cds;Parent=Msa0179160-mRNA-1
chr1_4	three_prime_UTR	66591587	66592089	66591587	ID=Msa0179160-mRNA-1:three_prime_utr;Parent=Msa0179160-mRNA-1

Gene Sequence	>Msa0179160 ATGGGACACTCAAATGTTTGGAACTCTCACCCCAAGACCTATGGTCCTGGTTCCCGCACTTGCCGTGTGTGCGGGAATTCACATGGATTGATAAGGAAGTATGGCCTTATGTGCTGCAGGCAATGCTTCCACAGCAATGCCAAGGAAATTGGCTTCATTAAGTACCGTTGA
Protein sequence	>Msa0179160 MGHSNVWNSHPKTYGPGSRTCRVCGNSHGLIRKYGLMCCRQCFHSNAKEIGFIKYR*