Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388520 | XP_013450311.1 | 98.068 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 1.43e-146 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388520 | sp|O65731|RS5_CICAR | 93.333 | 195 | 13 | 0 | 13 | 207 | 3 | 197 | 2.98e-133 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388520 | I3SKT5 | 98.068 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 6.84e-147 | 416 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa0388520 | 0.831968 | 1.235281e-55 | -8.615850e-47 |
| Msa0016440 | Msa0388520 | 0.806117 | 9.613358e-50 | -8.615850e-47 |
| Msa0029730 | Msa0388520 | 0.816303 | 5.927795e-52 | -8.615850e-47 |
| Msa0037230 | Msa0388520 | 0.801021 | 1.095928e-48 | -8.615850e-47 |
| Msa0042510 | Msa0388520 | 0.868795 | 5.006783e-66 | -8.615850e-47 |
| Msa0071640 | Msa0388520 | 0.811667 | 6.242546e-51 | -8.615850e-47 |
| Msa0079560 | Msa0388520 | 0.875620 | 2.669681e-68 | -8.615850e-47 |
| Msa0086160 | Msa0388520 | 0.837161 | 6.119536e-57 | -8.615850e-47 |
| Msa0089540 | Msa0388520 | 0.808879 | 2.493488e-50 | -8.615850e-47 |
| Msa0094210 | Msa0388520 | 0.864237 | 1.405100e-64 | -8.615850e-47 |
| Msa0127230 | Msa0388520 | 0.870689 | 1.206921e-66 | -8.615850e-47 |
| Msa0132460 | Msa0388520 | 0.841329 | 5.077589e-58 | -8.615850e-47 |
| Msa0146910 | Msa0388520 | 0.829674 | 4.511592e-55 | -8.615850e-47 |
| Msa0167860 | Msa0388520 | 0.827306 | 1.682889e-54 | -8.615850e-47 |
| Msa0168320 | Msa0388520 | 0.815497 | 8.968740e-52 | -8.615850e-47 |
| Msa0169710 | Msa0388520 | 0.828910 | 6.911604e-55 | -8.615850e-47 |
| Msa0179160 | Msa0388520 | 0.804590 | 2.007911e-49 | -8.615850e-47 |
| Msa0182050 | Msa0388520 | 0.841819 | 3.771552e-58 | -8.615850e-47 |
| Msa0182100 | Msa0388520 | 0.863238 | 2.870807e-64 | -8.615850e-47 |
| Msa0183840 | Msa0388520 | 0.820020 | 8.552238e-53 | -8.615850e-47 |
| Msa0188740 | Msa0388520 | 0.863135 | 3.089941e-64 | -8.615850e-47 |
| Msa0192300 | Msa0388520 | 0.860081 | 2.648899e-63 | -8.615850e-47 |
| Msa0195030 | Msa0388520 | 0.841451 | 4.715169e-58 | -8.615850e-47 |
| Msa0220410 | Msa0388520 | -0.809699 | 1.663376e-50 | -8.615850e-47 |
| Msa0237180 | Msa0388520 | 0.850617 | 1.512311e-60 | -8.615850e-47 |
| Msa0371490 | Msa0388520 | 0.871629 | 5.909819e-67 | -8.615850e-47 |
| Msa0373350 | Msa0388520 | 0.861725 | 8.381196e-64 | -8.615850e-47 |
| Msa0376850 | Msa0388520 | 0.839622 | 1.419316e-57 | -8.615850e-47 |
| Msa0377370 | Msa0388520 | 0.808245 | 3.404648e-50 | -8.615850e-47 |
| Msa0378620 | Msa0388520 | -0.819406 | 1.180781e-52 | -8.615850e-47 |
| Msa0379850 | Msa0388520 | -0.805915 | 1.059900e-49 | -8.615850e-47 |
| Msa0380590 | Msa0388520 | 0.841408 | 4.839194e-58 | -8.615850e-47 |
| Msa0382670 | Msa0388520 | 0.822220 | 2.661440e-53 | -8.615850e-47 |
| Msa0387290 | Msa0388520 | 0.838256 | 3.204724e-57 | -8.615850e-47 |
| Msa0388520 | Msa0416470 | 0.830754 | 2.457342e-55 | -8.615850e-47 |
| Msa0388520 | Msa0421920 | 0.834986 | 2.182146e-56 | -8.615850e-47 |
| Msa0388520 | Msa0426090 | 0.800270 | 1.559110e-48 | -8.615850e-47 |
| Msa0388520 | Msa0426940 | 0.829063 | 6.348390e-55 | -8.615850e-47 |
| Msa0388520 | Msa0430130 | 0.815956 | 7.088539e-52 | -8.615850e-47 |
| Msa0388520 | Msa0450150 | 0.804245 | 2.369554e-49 | -8.615850e-47 |
| Msa0388520 | Msa0467740 | 0.807921 | 3.990151e-50 | -8.615850e-47 |
| Msa0388520 | Msa0469430 | 0.822369 | 2.458227e-53 | -8.615850e-47 |
| Msa0388520 | Msa0472480 | 0.803062 | 4.169273e-49 | -8.615850e-47 |
| Msa0388520 | Msa0476730 | -0.801696 | 7.971483e-49 | -8.615850e-47 |
| Msa0388520 | Msa0500420 | 0.841080 | 5.900503e-58 | -8.615850e-47 |
| Msa0388520 | Msa0511760 | 0.839433 | 1.589193e-57 | -8.615850e-47 |
| Msa0388520 | Msa0514130 | 0.807390 | 5.174509e-50 | -8.615850e-47 |
| Msa0388520 | Msa0515110 | 0.801735 | 7.825776e-49 | -8.615850e-47 |
| Msa0388520 | Msa0516830 | 0.838977 | 2.086431e-57 | -8.615850e-47 |
| Msa0388520 | Msa0521100 | -0.803824 | 2.898307e-49 | -8.615850e-47 |
| Msa0388520 | Msa0521730 | 0.823886 | 1.087711e-53 | -8.615850e-47 |
| Msa0388520 | Msa0524340 | 0.823575 | 1.286397e-53 | -8.615850e-47 |
| Msa0388520 | Msa0547920 | 0.811092 | 8.323882e-51 | -8.615850e-47 |
| Msa0388520 | Msa0573550 | 0.877648 | 5.311259e-69 | -8.615850e-47 |
| Msa0388520 | Msa0574780 | 0.826393 | 2.781070e-54 | -8.615850e-47 |
| Msa0388520 | Msa0578010 | 0.850374 | 1.769763e-60 | -8.615850e-47 |
| Msa0388520 | Msa0582070 | 0.839791 | 1.282817e-57 | -8.615850e-47 |
| Msa0388520 | Msa0597240 | 0.801094 | 1.058885e-48 | -8.615850e-47 |
| Msa0388520 | Msa0602900 | 0.815512 | 8.899541e-52 | -8.615850e-47 |
| Msa0388520 | Msa0609120 | 0.836999 | 6.733543e-57 | -8.615850e-47 |
| Msa0388520 | Msa0619230 | 0.868771 | 5.096861e-66 | -8.615850e-47 |
| Msa0388520 | Msa0621190 | 0.901220 | 3.340887e-78 | -8.615850e-47 |
| Msa0388520 | Msa0643960 | 0.811825 | 5.769077e-51 | -8.615850e-47 |
| Msa0388520 | Msa0656450 | 0.867329 | 1.483161e-65 | -8.615850e-47 |
| Msa0388520 | Msa0691760 | 0.849541 | 3.025720e-60 | -8.615850e-47 |
| Msa0388520 | Msa0700370 | 0.859079 | 5.298727e-63 | -8.615850e-47 |
| Msa0388520 | Msa0708630 | 0.842582 | 2.368459e-58 | -8.615850e-47 |
| Msa0388520 | Msa0718560 | 0.812619 | 3.869828e-51 | -8.615850e-47 |
| Msa0388520 | Msa0738420 | 0.830101 | 3.550571e-55 | -8.615850e-47 |
| Msa0388520 | Msa0790450 | 0.852622 | 4.090719e-61 | -8.615850e-47 |
| Msa0388520 | Msa0846900 | 0.802593 | 5.212856e-49 | -8.615850e-47 |
| Msa0388520 | Msa0852620 | 0.809180 | 2.149607e-50 | -8.615850e-47 |
| Msa0388520 | Msa0881240 | 0.816672 | 4.900785e-52 | -8.615850e-47 |
| Msa0388520 | Msa0929700 | 0.863543 | 2.309785e-64 | -8.615850e-47 |
| Msa0388520 | Msa0930360 | 0.854120 | 1.521160e-61 | -8.615850e-47 |
| Msa0388520 | Msa0930790 | 0.851239 | 1.010030e-60 | -8.615850e-47 |
| Msa0388520 | Msa0930890 | 0.814244 | 1.700517e-51 | -8.615850e-47 |
| Msa0388520 | Msa1001620 | 0.812980 | 3.226696e-51 | -8.615850e-47 |
| Msa0388520 | Msa1025200 | 0.823983 | 1.032131e-53 | -8.615850e-47 |
| Msa0388520 | Msa1025220 | 0.833831 | 4.253892e-56 | -8.615850e-47 |
| Msa0388520 | Msa1035040 | 0.841888 | 3.615981e-58 | -8.615850e-47 |
| Msa0388520 | Msa1076200 | 0.801505 | 8.725624e-49 | -8.615850e-47 |
| Msa0388520 | Msa1082050 | 0.821316 | 4.308410e-53 | -8.615850e-47 |
| Msa0388520 | Msa1085850 | 0.820322 | 7.291978e-53 | -8.615850e-47 |
| Msa0388520 | Msa1124980 | 0.807122 | 5.898079e-50 | -8.615850e-47 |
| Msa0388520 | Msa1126690 | 0.841112 | 5.789181e-58 | -8.615850e-47 |
| Msa0388520 | Msa1130680 | 0.800348 | 1.503077e-48 | -8.615850e-47 |
| Msa0388520 | Msa1144610 | 0.884508 | 1.806578e-71 | -8.615850e-47 |
| Msa0388520 | Msa1144630 | 0.841223 | 5.413594e-58 | -8.615850e-47 |
| Msa0388520 | Msa1156830 | 0.839766 | 1.302334e-57 | -8.615850e-47 |
| Msa0388520 | Msa1163320 | 0.800125 | 1.668559e-48 | -8.615850e-47 |
| Msa0388520 | Msa1165700 | 0.813477 | 2.509608e-51 | -8.615850e-47 |
| Msa0388520 | Msa1166670 | 0.828516 | 8.607984e-55 | -8.615850e-47 |
| Msa0388520 | Msa1167360 | 0.801494 | 8.767212e-49 | -8.615850e-47 |
| Msa0388520 | Msa1227350 | 0.870548 | 1.342846e-66 | -8.615850e-47 |
| Msa0388520 | Msa1235950 | 0.802234 | 6.180544e-49 | -8.615850e-47 |
| Msa0388520 | Msa1235980 | 0.803861 | 2.848114e-49 | -8.615850e-47 |
| Msa0388520 | Msa1237040 | 0.830285 | 3.200272e-55 | -8.615850e-47 |
| Msa0388520 | Msa1245270 | 0.859995 | 2.811330e-63 | -8.615850e-47 |
| Msa0388520 | Msa1266720 | -0.808717 | 2.699458e-50 | -8.615850e-47 |
| Msa0388520 | Msa1269250 | -0.802506 | 5.432423e-49 | -8.615850e-47 |
| Msa0388520 | Msa1284800 | 0.883931 | 2.953695e-71 | -8.615850e-47 |
| Msa0388520 | Msa1317390 | 0.820987 | 5.129448e-53 | -8.615850e-47 |
| Msa0388520 | Msa1334560 | 0.806521 | 7.900970e-50 | -8.615850e-47 |
| Msa0388520 | Msa1347610 | 0.812137 | 4.932284e-51 | -8.615850e-47 |
| Msa0388520 | Msa1351020 | 0.857655 | 1.407850e-62 | -8.615850e-47 |
| Msa0388520 | Msa1363910 | 0.863356 | 2.638461e-64 | -8.615850e-47 |
| Msa0388520 | Msa1363930 | 0.840965 | 6.328693e-58 | -8.615850e-47 |
| Msa0388520 | Msa1366540 | 0.824815 | 6.580427e-54 | -8.615850e-47 |
| Msa0388520 | Msa1387750 | 0.881001 | 3.447266e-70 | -8.615850e-47 |
| Msa0388520 | Msa1390760 | 0.871849 | 4.994298e-67 | -8.615850e-47 |
| Msa0388520 | Msa1403520 | 0.860557 | 1.901413e-63 | -8.615850e-47 |
| Msa0388520 | Msa1407550 | 0.824116 | 9.610242e-54 | -8.615850e-47 |
| Msa0388520 | Msa1413570 | 0.869505 | 2.944339e-66 | -8.615850e-47 |
| Msa0388520 | Msa1424570 | 0.831816 | 1.347067e-55 | -8.615850e-47 |
| Msa0388520 | Msa1432310 | 0.840762 | 7.153182e-58 | -8.615850e-47 |
| Msa0388520 | Msa1446510 | 0.899646 | 1.611874e-77 | -8.615850e-47 |
| Msa0388520 | Msa1449160 | 0.834354 | 3.146870e-56 | -8.615850e-47 |
| Msa0388520 | Msa1450560 | 0.851952 | 6.345841e-61 | -8.615850e-47 |
| Msa0388520 | Msa1463510 | 0.807508 | 4.883776e-50 | -8.615850e-47 |
| Msa0388520 | Msa1465700 | 0.810211 | 1.290141e-50 | -8.615850e-47 |
| Msa0388520 | Msa1465890 | 0.846560 | 2.011234e-59 | -8.615850e-47 |
| Msa0239420 | Msa0388520 | 0.825645 | 4.187943e-54 | -8.615850e-47 |
| Msa0266380 | Msa0388520 | -0.810695 | 1.014522e-50 | -8.615850e-47 |
| Msa0270160 | Msa0388520 | 0.864309 | 1.334468e-64 | -8.615850e-47 |
| Msa0274940 | Msa0388520 | 0.839211 | 1.814276e-57 | -8.615850e-47 |
| Msa0277600 | Msa0388520 | 0.813026 | 3.152122e-51 | -8.615850e-47 |
| Msa0281370 | Msa0388520 | 0.806817 | 6.841997e-50 | -8.615850e-47 |
| Msa0299540 | Msa0388520 | -0.809513 | 1.822912e-50 | -8.615850e-47 |
| Msa0301250 | Msa0388520 | 0.855345 | 6.714383e-62 | -8.615850e-47 |
| Msa0313060 | Msa0388520 | 0.862552 | 4.675632e-64 | -8.615850e-47 |
| Msa0315660 | Msa0388520 | 0.845276 | 4.493392e-59 | -8.615850e-47 |
| Msa0341860 | Msa0388520 | -0.813330 | 2.703994e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388520 | MtrunA17_Chr7g0268431 | 98.068 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 1.32e-150 | 416 |
| Msa0388520 | MtrunA17_Chr1g0176261 | 94.737 | 209 | 7 | 3 | 1 | 207 | 33 | 239 | 7.11e-141 | 392 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388520 | AT2G37270.1 | 88.557 | 201 | 22 | 1 | 8 | 207 | 7 | 207 | 6.29e-132 | 369 |
| Msa0388520 | AT2G37270.2 | 88.557 | 201 | 22 | 1 | 8 | 207 | 7 | 207 | 6.29e-132 | 369 |
| Msa0388520 | AT3G11940.1 | 89.529 | 191 | 20 | 0 | 17 | 207 | 17 | 207 | 2.40e-130 | 365 |
| Msa0388520 | AT3G11940.2 | 89.529 | 191 | 20 | 0 | 17 | 207 | 17 | 207 | 2.40e-130 | 365 |
Find 75 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATATAAATACAAATCT+AGG | 0.236520 | 3_1:+92985967 | None:intergenic |
| CAGCTATGCGATCAAGAAAA+AGG | 0.316264 | 3_1:+92989634 | Msa0388520:intron |
| GCATCAACTATAACTTGAAT+TGG | 0.326315 | 3_1:-92986924 | None:intergenic |
| TCCTCTTCGTCGGGTTAATC+AGG | 0.327028 | 3_1:+92989399 | Msa0388520:CDS |
| GAGGAAAATAAACCAGTAAA+AGG | 0.332564 | 3_1:-92989789 | None:intergenic |
| GAGCTTGACTTCGTTTAGAT+TGG | 0.348914 | 3_1:-92986201 | None:intergenic |
| ACCAGTTGTTAGAAGATATA+TGG | 0.352278 | 3_1:-92989422 | None:intergenic |
| AGAGAAGATGCAACCAGAAT+TGG | 0.353281 | 3_1:+92989337 | Msa0388520:CDS |
| ATGGAGCTTCGACGACGTTC+AGG | 0.358685 | 3_1:+92986232 | Msa0388520:CDS |
| AACACGTCAGCTTGGAAAAC+TGG | 0.359904 | 3_1:-92989947 | None:intergenic |
| GTGCCCGTGAAGCTGCATTT+AGG | 0.361118 | 3_1:+92989443 | Msa0388520:CDS |
| TTGGATCTGCTGGAGTTGTT+AGG | 0.369348 | 3_1:+92989356 | Msa0388520:CDS |
| AGGAACATATGTTGCATGTT+TGG | 0.372138 | 3_1:-92986730 | None:intergenic |
| GCCAATCGTTAAGCATCATT+TGG | 0.372423 | 3_1:+92989680 | Msa0388520:exon |
| GCCATATATCTTCTAACAAC+TGG | 0.404354 | 3_1:+92989421 | Msa0388520:CDS |
| CGCGGCCGTCAGCTTCTCAC+TGG | 0.409187 | 3_1:-92986029 | None:intergenic |
| GGTACTCAAAGAAGCGCTTC+AGG | 0.411900 | 3_1:+92986766 | Msa0388520:CDS |
| AGCTTGACTTCGTTTAGATT+GGG | 0.412691 | 3_1:-92986200 | None:intergenic |
| CTTAGTCCATGACTGTTTCA+AGG | 0.413064 | 3_1:+92989848 | Msa0388520:three_prime_UTR |
| GAAAGAAACTCATGGCTGTT+AGG | 0.417495 | 3_1:+92986853 | Msa0388520:CDS |
| CAGATTACCGATCTGTCTCT+TGG | 0.434208 | 3_1:+92986684 | Msa0388520:intron |
| AGATTACCGATCTGTCTCTT+GGG | 0.440013 | 3_1:+92986685 | Msa0388520:intron |
| GCAACCAGAATTGGATCTGC+TGG | 0.442717 | 3_1:+92989346 | Msa0388520:CDS |
| TGAAGGCAAGCAAGAGTGAC+AGG | 0.449142 | 3_1:-92985996 | None:intergenic |
| TGGATATCTCTCCTCTTCGT+CGG | 0.449849 | 3_1:+92989389 | Msa0388520:CDS |
| TAGTTGATGCTGTCGTCAAC+AGG | 0.451278 | 3_1:+92986937 | Msa0388520:CDS |
| TGCTGGAGTTGTTAGGAGGC+AGG | 0.469034 | 3_1:+92989363 | Msa0388520:CDS |
| TGATGCTTAACGATTGGCCT+TGG | 0.471931 | 3_1:-92989675 | None:intergenic |
| AGATTGGGATCAACTTCGAC+TGG | 0.475242 | 3_1:-92986185 | None:intergenic |
| CTGCCAAGGGTTCATCCAAC+AGG | 0.475684 | 3_1:+92989512 | Msa0388520:CDS |
| ATTCTGGTTGCATCTTCTCT+AGG | 0.476377 | 3_1:-92989334 | None:intergenic |
| TCAATATAAATACAAATCTA+GGG | 0.483881 | 3_1:+92985968 | None:intergenic |
| TGTTCCTAAATGCAGCTTCA+CGG | 0.488373 | 3_1:-92989447 | None:intergenic |
| CTGTCTCTTGGGGATTACAT+TGG | 0.493111 | 3_1:+92986696 | Msa0388520:CDS |
| AACTCCAGCAGATCCAATTC+TGG | 0.495047 | 3_1:-92989350 | None:intergenic |
| TCCAAATGATGCTTAACGAT+TGG | 0.503018 | 3_1:-92989681 | None:intergenic |
| TAAGACAATTGCTGAATGCT+TGG | 0.507627 | 3_1:+92989471 | Msa0388520:CDS |
| GGATATCTCTCCTCTTCGTC+GGG | 0.512011 | 3_1:+92989390 | Msa0388520:CDS |
| TCAGCTTGGAAAACTGGTAT+TGG | 0.512119 | 3_1:-92989941 | None:intergenic |
| GTTCCTAAATGCAGCTTCAC+GGG | 0.512374 | 3_1:-92989446 | None:intergenic |
| AGTTGTTAGGAGGCAGGCTG+TGG | 0.516790 | 3_1:+92989369 | Msa0388520:CDS |
| ACATATGTTCCTCACACTGC+TGG | 0.521105 | 3_1:+92986741 | Msa0388520:CDS |
| GGGGATTACATTGGAGCAAG+AGG | 0.537561 | 3_1:+92986705 | Msa0388520:CDS |
| GAACGTCGTCGAAGCTCCAT+TGG | 0.540472 | 3_1:-92986229 | None:intergenic |
| AATACTTCAACACGTCAGCT+TGG | 0.541551 | 3_1:-92989955 | None:intergenic |
| TTAGTGAGCCTCTCAACAAT+GGG | 0.543323 | 3_1:-92986801 | None:intergenic |
| TGAGATTGAGAGAGTTGCCA+AGG | 0.553654 | 3_1:+92989658 | Msa0388520:CDS |
| ATACCTGTTGGATGAACCCT+TGG | 0.559348 | 3_1:-92989515 | None:intergenic |
| GATCTGCTGGAGTTGTTAGG+AGG | 0.561323 | 3_1:+92989359 | Msa0388520:CDS |
| TGAACTCATTAACGCTGCCA+AGG | 0.562075 | 3_1:+92989498 | Msa0388520:CDS |
| GTTAGTGAGCCTCTCAACAA+TGG | 0.562680 | 3_1:-92986802 | None:intergenic |
| AAGTCAAGCTCTTCAACCAA+TGG | 0.580728 | 3_1:+92986213 | Msa0388520:CDS |
| CTCAGTGTCCCATTGTTGAG+AGG | 0.591866 | 3_1:+92986793 | Msa0388520:CDS |
| AATGATCCTTGAAACAGTCA+TGG | 0.599615 | 3_1:-92989854 | None:intergenic |
| TTAAATAAAGATGTAATACA+AGG | 0.605416 | 3_1:-92989739 | None:intergenic |
| ACAAGTCAATTCAACATGAG+AGG | 0.607318 | 3_1:-92989808 | None:intergenic |
| GATTGGGATCAACTTCGACT+GGG | 0.607523 | 3_1:-92986184 | None:intergenic |
| GCCGCGCCGCACTATCTACA+AGG | 0.608102 | 3_1:+92986046 | Msa0388520:five_prime_UTR |
| GATGGTTGAAATGATAATGC+TGG | 0.608203 | 3_1:+92989999 | Msa0388520:three_prime_UTR |
| GATTACCGATCTGTCTCTTG+GGG | 0.611070 | 3_1:+92986686 | Msa0388520:intron |
| GTAATCCCCAAGAGACAGAT+CGG | 0.613626 | 3_1:-92986691 | None:intergenic |
| GAACTCATTAACGCTGCCAA+GGG | 0.615553 | 3_1:+92989499 | Msa0388520:CDS |
| ATGATGCACGGCAGAAACAA+CGG | 0.618587 | 3_1:+92986831 | Msa0388520:CDS |
| TAGGATCATTAAGCATGCCA+TGG | 0.620948 | 3_1:+92986872 | Msa0388520:CDS |
| GCCTGATTAACCCGACGAAG+AGG | 0.622409 | 3_1:-92989400 | None:intergenic |
| AGCGACGGTTTCATCAGCCA+TGG | 0.634868 | 3_1:-92986159 | None:intergenic |
| TAGCAAGTGAATGATCTCCA+TGG | 0.641966 | 3_1:-92986889 | None:intergenic |
| AAACAACGGAAAGAAACTCA+TGG | 0.646751 | 3_1:+92986845 | Msa0388520:CDS |
| ATGTTCCTCACACTGCTGGT+AGG | 0.649707 | 3_1:+92986745 | Msa0388520:CDS |
| ACTAACTCTCTCATGATGCA+CGG | 0.651624 | 3_1:+92986819 | Msa0388520:CDS |
| AAGCTACCTTGTAGATAGTG+CGG | 0.671061 | 3_1:-92986052 | None:intergenic |
| AACTTCGACTGGGATAGCGA+CGG | 0.675722 | 3_1:-92986174 | None:intergenic |
| GAAGGCAAGCAAGAGTGACA+GGG | 0.681983 | 3_1:-92985995 | None:intergenic |
| GAGTACCTACCAGCAGTGTG+AGG | 0.691601 | 3_1:-92986750 | None:intergenic |
| ACCTTGTAGATAGTGCGGCG+CGG | 0.782232 | 3_1:-92986047 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAAAAAACCATTA+AGG | - | chr3_1:92986601-92986620 | None:intergenic | 10.0% |
| !! | ATAGTTGAATTATTATTAAT+TGG | + | chr3_1:92987628-92987647 | Msa0388520:intron | 10.0% |
| !!! | TTTCAATAAATATTTTATCT+TGG | + | chr3_1:92988201-92988220 | Msa0388520:intron | 10.0% |
| !!! | AATACTTTTTTGAATATTTA+AGG | + | chr3_1:92988947-92988966 | Msa0388520:intron | 10.0% |
| !!! | ATACTTTTTTGAATATTTAA+GGG | + | chr3_1:92988948-92988967 | Msa0388520:intron | 10.0% |
| !!! | AATTATATTATTTTATGTAG+TGG | + | chr3_1:92989310-92989329 | Msa0388520:intron | 10.0% |
| !!! | GCTATTTTCATAATTTATAT+TGG | + | chr3_1:92986460-92986479 | Msa0388520:intron | 15.0% |
| !!! | ATAAATCAACTTGAATTTTT+TGG | + | chr3_1:92987268-92987287 | Msa0388520:intron | 15.0% |
| !!! | TGTTTTTAAATTGTTAAAAC+TGG | + | chr3_1:92987662-92987681 | Msa0388520:intron | 15.0% |
| !!! | GTTTTTAAATTGTTAAAACT+GGG | + | chr3_1:92987663-92987682 | Msa0388520:intron | 15.0% |
| !! | TATTTATCTGTTTACATATA+GGG | - | chr3_1:92988382-92988401 | None:intergenic | 15.0% |
| !!! | AAACTTTAAAGATTGAATAA+TGG | - | chr3_1:92989545-92989564 | None:intergenic | 15.0% |
| !!! | TGATGAGAAATATTTTATTT+TGG | + | chr3_1:92989715-92989734 | Msa0388520:three_prime_UTR | 15.0% |
| !! | TTAAATAAAGATGTAATACA+AGG | - | chr3_1:92989742-92989761 | None:intergenic | 15.0% |
| !! | GTCAATATATATCAATCATA+GGG | - | chr3_1:92986993-92987012 | None:intergenic | 20.0% |
| !! | AGTCAATATATATCAATCAT+AGG | - | chr3_1:92986994-92987013 | None:intergenic | 20.0% |
| !! | AATAATATGAAACAGATCAA+TGG | - | chr3_1:92987071-92987090 | None:intergenic | 20.0% |
| !!! | TTGAAATTGAATTTTTGATG+CGG | + | chr3_1:92987090-92987109 | Msa0388520:intron | 20.0% |
| !!! | ATTTTAATAAAACAAAGTCC+AGG | - | chr3_1:92987493-92987512 | None:intergenic | 20.0% |
| !! | ATCACTTATACATAACAATA+AGG | - | chr3_1:92987794-92987813 | None:intergenic | 20.0% |
| !! | GTATAAGTGATCAAATATAT+AGG | + | chr3_1:92987803-92987822 | Msa0388520:intron | 20.0% |
| !! | TTTATAGCATTATAACTACA+TGG | - | chr3_1:92987850-92987869 | None:intergenic | 20.0% |
| !!! | GATTTTGTGATCAAATATAT+AGG | + | chr3_1:92987873-92987892 | Msa0388520:intron | 20.0% |
| !! | TTTATAGCATTATAACTACA+TGG | - | chr3_1:92987850-92987869 | None:intergenic | 20.0% |
| !!! | ATGCTATAAATATTTTGTGA+TGG | + | chr3_1:92987931-92987950 | Msa0388520:intron | 20.0% |
| !! | GATTACAATATGACAAAATA+AGG | - | chr3_1:92988165-92988184 | None:intergenic | 20.0% |
| !! | TGTCATATTGTAATCAAATT+TGG | + | chr3_1:92988170-92988189 | Msa0388520:intron | 20.0% |
| !! | CTATTTATCTGTTTACATAT+AGG | - | chr3_1:92988383-92988402 | None:intergenic | 20.0% |
| !! | GATTACAATATGACAAAATA+AGG | - | chr3_1:92988165-92988184 | None:intergenic | 20.0% |
| !! | ATGATTTATTATTTCCCTAT+TGG | + | chr3_1:92988864-92988883 | Msa0388520:intron | 20.0% |
| !! | TATTAACAATTAACTGTGTA+TGG | + | chr3_1:92989145-92989164 | Msa0388520:intron | 20.0% |
| !!! | AACATTGTTGTTTTTAAACA+TGG | + | chr3_1:92989760-92989779 | Msa0388520:three_prime_UTR | 20.0% |
| !!! | TTTTTACATTTCTGCTATTT+AGG | + | chr3_1:92989904-92989923 | Msa0388520:three_prime_UTR | 20.0% |
| ! | TAATTCAATGATTAGGGTTA+GGG | - | chr3_1:92986130-92986149 | None:intergenic | 25.0% |
| ! | ATAATTCAATGATTAGGGTT+AGG | - | chr3_1:92986131-92986150 | None:intergenic | 25.0% |
| ! | CGTGAATAATTCAATGATTA+GGG | - | chr3_1:92986136-92986155 | None:intergenic | 25.0% |
| ! | CAAATTATGACATGTTTGTT+GGG | - | chr3_1:92986519-92986538 | None:intergenic | 25.0% |
| ! | ACAAATTATGACATGTTTGT+TGG | - | chr3_1:92986520-92986539 | None:intergenic | 25.0% |
| !!! | TATTTTCAAGTAACTCATGT+CGG | + | chr3_1:92986542-92986561 | Msa0388520:intron | 25.0% |
| ! | TCAAATAAGCCAATCTAAAT+AGG | + | chr3_1:92986574-92986593 | Msa0388520:intron | 25.0% |
| ! | GAAAAAAGTGACAAATGATA+AGG | - | chr3_1:92987227-92987246 | None:intergenic | 25.0% |
| !!! | TTAAGAATTTTGACAATGCA+TGG | + | chr3_1:92987306-92987325 | Msa0388520:intron | 25.0% |
| ! | TTGTTTATTCTCACTTTGTT+TGG | + | chr3_1:92987584-92987603 | Msa0388520:intron | 25.0% |
| ! | GATGATTTATTGTTTCCTAT+TGG | + | chr3_1:92987718-92987737 | Msa0388520:intron | 25.0% |
| ! | TGATTAATACTTGATAGAGA+AGG | + | chr3_1:92987976-92987995 | Msa0388520:intron | 25.0% |
| !!! | ACTATTTTAGCTGTTAAGAT+TGG | + | chr3_1:92988032-92988051 | Msa0388520:intron | 25.0% |
| !!! | CTATTTTAGCTGTTAAGATT+GGG | + | chr3_1:92988033-92988052 | Msa0388520:intron | 25.0% |
| !!! | TATTTTAGCTGTTAAGATTG+GGG | + | chr3_1:92988034-92988053 | Msa0388520:intron | 25.0% |
| !!! | GATGATTTTTTGTTTCCTAT+TGG | + | chr3_1:92988088-92988107 | Msa0388520:intron | 25.0% |
| ! | AGTAATCAATTAATCATGCA+TGG | + | chr3_1:92988225-92988244 | Msa0388520:intron | 25.0% |
| !! | TGTAATTTTACTTGTACGAA+AGG | + | chr3_1:92988269-92988288 | Msa0388520:intron | 25.0% |
| ! | TAAATCATCATTTCATTCTC+CGG | - | chr3_1:92987707-92987726 | None:intergenic | 25.0% |
| ! | ATTAAAGTAGTAAAGTGTGA+AGG | + | chr3_1:92988415-92988434 | Msa0388520:intron | 25.0% |
| !!! | AATTGTTTGTTTTTTTCCTC+TGG | + | chr3_1:92988744-92988763 | Msa0388520:intron | 25.0% |
| !!! | AAGTTTGAAATCTTTTCTTG+TGG | + | chr3_1:92988783-92988802 | Msa0388520:intron | 25.0% |
| ! | ATTGAAAGGAGAAAATGAAA+TGG | - | chr3_1:92989101-92989120 | None:intergenic | 25.0% |
| ! | CGAGAAACAAATTGTAAATA+AGG | + | chr3_1:92989191-92989210 | Msa0388520:intron | 25.0% |
| ! | TTAATTCAAAGCAAAAACTG+AGG | + | chr3_1:92989231-92989250 | Msa0388520:intron | 25.0% |
| ! | ACATATCCTAAAACTAAAAC+TGG | - | chr3_1:92989276-92989295 | None:intergenic | 25.0% |
| !! | CTTTAAAGATTGAATAATGG+TGG | - | chr3_1:92989542-92989561 | None:intergenic | 25.0% |
| ! | AGAAAACAAATTCAGTACAT+TGG | - | chr3_1:92989568-92989587 | None:intergenic | 25.0% |
| GCGTGAATAATTCAATGATT+AGG | - | chr3_1:92986137-92986156 | None:intergenic | 30.0% | |
| CATTAAGGACCTATTTAGAT+TGG | - | chr3_1:92986586-92986605 | None:intergenic | 30.0% | |
| CAATCTAAATAGGTCCTTAA+TGG | + | chr3_1:92986584-92986603 | Msa0388520:intron | 30.0% | |
| GCATCAACTATAACTTGAAT+TGG | - | chr3_1:92986927-92986946 | None:intergenic | 30.0% | |
| GGGAAAATAACAAAATGCAA+AGG | - | chr3_1:92986973-92986992 | None:intergenic | 30.0% | |
| CTGCTTAATATGTCTTGATT+TGG | + | chr3_1:92987116-92987135 | Msa0388520:intron | 30.0% | |
| !! | ATATGTCTTGATTTGGAGAA+TGG | + | chr3_1:92987123-92987142 | Msa0388520:intron | 30.0% |
| GATGATTATGTGTTTCCTAT+TGG | + | chr3_1:92987149-92987168 | Msa0388520:intron | 30.0% | |
| ATTCAGGTATTCAAACCAAT+AGG | - | chr3_1:92987167-92987186 | None:intergenic | 30.0% | |
| TACAAAAAATGCCATCATTC+AGG | - | chr3_1:92987183-92987202 | None:intergenic | 30.0% | |
| TTGATTTACTGTTTCCCTAT+TGG | + | chr3_1:92987416-92987435 | Msa0388520:intron | 30.0% | |
| ACATGCATTATTACTGTTGA+GGG | - | chr3_1:92987520-92987539 | None:intergenic | 30.0% | |
| AATACAAAAACGCATCATCT+AGG | - | chr3_1:92987752-92987771 | None:intergenic | 30.0% | |
| AATACTTGATAGAGAAGGAT+AGG | + | chr3_1:92987981-92988000 | Msa0388520:intron | 30.0% | |
| !!! | ATTTTAGCTGTTAAGATTGG+GGG | + | chr3_1:92988035-92988054 | Msa0388520:intron | 30.0% |
| !! | TTGTTTCCTATTGGTTTGAT+TGG | + | chr3_1:92987727-92987746 | Msa0388520:intron | 30.0% |
| ACAGCCATAGTTATCAATAT+TGG | + | chr3_1:92988588-92988607 | Msa0388520:intron | 30.0% | |
| CAGCCATAGTTATCAATATT+GGG | + | chr3_1:92988589-92988608 | Msa0388520:intron | 30.0% | |
| ! | CAACCCAATATTGATAACTA+TGG | - | chr3_1:92988595-92988614 | None:intergenic | 30.0% |
| TCAGATAGAGCTAATACAAA+AGG | - | chr3_1:92987197-92987216 | None:intergenic | 30.0% | |
| ATCTTGCATCATTACTACAA+GGG | - | chr3_1:92988718-92988737 | None:intergenic | 30.0% | |
| AATCTTGCATCATTACTACA+AGG | - | chr3_1:92988719-92988738 | None:intergenic | 30.0% | |
| TCCTAAAACTAAAACTGGTT+GGG | - | chr3_1:92989271-92989290 | None:intergenic | 30.0% | |
| ATCCTAAAACTAAAACTGGT+TGG | - | chr3_1:92989272-92989291 | None:intergenic | 30.0% | |
| ACCAGTTGTTAGAAGATATA+TGG | - | chr3_1:92989425-92989444 | None:intergenic | 30.0% | |
| !! | GTACTGAATTTGTTTTCTCT+TGG | + | chr3_1:92989570-92989589 | Msa0388520:intron | 30.0% |
| GAGGAAAATAAACCAGTAAA+AGG | - | chr3_1:92989792-92989811 | None:intergenic | 30.0% | |
| GAAATGTAAAAAATCACAGG+TGG | - | chr3_1:92989896-92989915 | None:intergenic | 30.0% | |
| GCAGAAATGTAAAAAATCAC+AGG | - | chr3_1:92989899-92989918 | None:intergenic | 30.0% | |
| !!! | TTGTTGATTTTCATAGTCGA+TGG | + | chr3_1:92989981-92990000 | Msa0388520:three_prime_UTR | 30.0% |
| !!! | TCACTGGTTTTTAGTTCTGA+AGG | - | chr3_1:92986016-92986035 | None:intergenic | 35.0% |
| AGCTTGACTTCGTTTAGATT+GGG | - | chr3_1:92986203-92986222 | None:intergenic | 35.0% | |
| !! | CAAACAGGGCTTATTTCTAT+AGG | - | chr3_1:92986359-92986378 | None:intergenic | 35.0% |
| CTATAGAAATAAGCCCTGTT+TGG | + | chr3_1:92986357-92986376 | Msa0388520:intron | 35.0% | |
| ACAAGTTGTTCATCCAAACA+GGG | - | chr3_1:92986373-92986392 | None:intergenic | 35.0% | |
| AACAAGTTGTTCATCCAAAC+AGG | - | chr3_1:92986374-92986393 | None:intergenic | 35.0% | |
| AGGAACATATGTTGCATGTT+TGG | - | chr3_1:92986733-92986752 | None:intergenic | 35.0% | |
| AAACAACGGAAAGAAACTCA+TGG | + | chr3_1:92986845-92986864 | Msa0388520:CDS | 35.0% | |
| TGGTTTGAATACCTGAATGA+TGG | + | chr3_1:92987169-92987188 | Msa0388520:intron | 35.0% | |
| GTGACAAATGATAAGGAGAA+TGG | - | chr3_1:92987220-92987239 | None:intergenic | 35.0% | |
| ATACAAAAATGCCATCATGC+AGG | - | chr3_1:92987450-92987469 | None:intergenic | 35.0% | |
| CACATGCATTATTACTGTTG+AGG | - | chr3_1:92987521-92987540 | None:intergenic | 35.0% | |
| ATCTAGGCAATCAAACCAAT+AGG | - | chr3_1:92987736-92987755 | None:intergenic | 35.0% | |
| !! | TAGGTGGGTTGGTTATTAAT+TGG | + | chr3_1:92988000-92988019 | Msa0388520:intron | 35.0% |
| ATCTAGCCAATCAAACCAAT+AGG | - | chr3_1:92988106-92988125 | None:intergenic | 35.0% | |
| !!! | TACAACTAGCTTTTGATTGC+TGG | + | chr3_1:92988326-92988345 | Msa0388520:intron | 35.0% |
| AATTGTCACAGCTTAAGCTT+TGG | + | chr3_1:92988558-92988577 | Msa0388520:intron | 35.0% | |
| TCTTGCATCATTACTACAAG+GGG | - | chr3_1:92988717-92988736 | None:intergenic | 35.0% | |
| TAAGCAATAAACATCACCAG+AGG | - | chr3_1:92988763-92988782 | None:intergenic | 35.0% | |
| ! | GAAATCTTTTCTTGTGGTAG+AGG | + | chr3_1:92988789-92988808 | Msa0388520:intron | 35.0% |
| AATACAAAATGCCATCATCC+AGG | - | chr3_1:92988898-92988917 | None:intergenic | 35.0% | |
| AATCCTACCCAAATTACACA+CGG | - | chr3_1:92989008-92989027 | None:intergenic | 35.0% | |
| TCTCAGCACATAACATTGAA+AGG | - | chr3_1:92989115-92989134 | None:intergenic | 35.0% | |
| !!! | TCCCAACCAGTTTTAGTTTT+AGG | + | chr3_1:92989267-92989286 | Msa0388520:intron | 35.0% |
| GCCATATATCTTCTAACAAC+TGG | + | chr3_1:92989421-92989440 | Msa0388520:CDS | 35.0% | |
| TAAGACAATTGCTGAATGCT+TGG | + | chr3_1:92989471-92989490 | Msa0388520:CDS | 35.0% | |
| AATAATGGTGGTATACCTGT+TGG | - | chr3_1:92989530-92989549 | None:intergenic | 35.0% | |
| ! | TCTCTTGGATTTTCCTTGTT+TGG | + | chr3_1:92989585-92989604 | Msa0388520:intron | 35.0% |
| TGTTAGCAAAGAACCAAACA+AGG | - | chr3_1:92989601-92989620 | None:intergenic | 35.0% | |
| TCCAAATGATGCTTAACGAT+TGG | - | chr3_1:92989684-92989703 | None:intergenic | 35.0% | |
| ! | ACATGGTGTAAACCTTTTAC+TGG | + | chr3_1:92989777-92989796 | Msa0388520:three_prime_UTR | 35.0% |
| ACAAGTCAATTCAACATGAG+AGG | - | chr3_1:92989811-92989830 | None:intergenic | 35.0% | |
| AATGATCCTTGAAACAGTCA+TGG | - | chr3_1:92989857-92989876 | None:intergenic | 35.0% | |
| AAAAACCAGTGAGAAGCTGA+CGG | + | chr3_1:92986024-92986043 | Msa0388520:five_prime_UTR | 40.0% | |
| AAGCTACCTTGTAGATAGTG+CGG | - | chr3_1:92986055-92986074 | None:intergenic | 40.0% | |
| GTTAACGAGAGAGATGAAGA+AGG | - | chr3_1:92986104-92986123 | None:intergenic | 40.0% | |
| TTGAATTATTCACGCAGCCA+TGG | + | chr3_1:92986142-92986161 | Msa0388520:intron | 40.0% | |
| GAGCTTGACTTCGTTTAGAT+TGG | - | chr3_1:92986204-92986223 | None:intergenic | 40.0% | |
| AAGTCAAGCTCTTCAACCAA+TGG | + | chr3_1:92986213-92986232 | Msa0388520:CDS | 40.0% | |
| AGATTACCGATCTGTCTCTT+GGG | + | chr3_1:92986685-92986704 | Msa0388520:intron | 40.0% | |
| TTAGTGAGCCTCTCAACAAT+GGG | - | chr3_1:92986804-92986823 | None:intergenic | 40.0% | |
| ACTAACTCTCTCATGATGCA+CGG | + | chr3_1:92986819-92986838 | Msa0388520:CDS | 40.0% | |
| GAAAGAAACTCATGGCTGTT+AGG | + | chr3_1:92986853-92986872 | Msa0388520:CDS | 40.0% | |
| TAGGATCATTAAGCATGCCA+TGG | + | chr3_1:92986872-92986891 | Msa0388520:CDS | 40.0% | |
| TAGCAAGTGAATGATCTCCA+TGG | - | chr3_1:92986892-92986911 | None:intergenic | 40.0% | |
| ACCTACTTACTCATCCGAAT+CGG | + | chr3_1:92987381-92987400 | Msa0388520:intron | 40.0% | |
| ! | AACTTTTCATCCTCCCGATT+CGG | - | chr3_1:92987398-92987417 | None:intergenic | 40.0% |
| TGCAGGCAATCAAACCAATA+GGG | - | chr3_1:92987433-92987452 | None:intergenic | 40.0% | |
| ATGCAGGCAATCAAACCAAT+AGG | - | chr3_1:92987434-92987453 | None:intergenic | 40.0% | |
| ! | GAGCTGTTGATTGTTTGAAC+TGG | + | chr3_1:92987685-92987704 | Msa0388520:intron | 40.0% |
| ACTTGATAGAGAAGGATAGG+TGG | + | chr3_1:92987984-92988003 | Msa0388520:intron | 40.0% | |
| CTTGATAGAGAAGGATAGGT+GGG | + | chr3_1:92987985-92988004 | Msa0388520:intron | 40.0% | |
| ! | TGGTTTGATTGGCTAGATGA+TGG | + | chr3_1:92988108-92988127 | Msa0388520:intron | 40.0% |
| !! | TAGCTTTTGATTGCTGGAAC+CGG | + | chr3_1:92988332-92988351 | Msa0388520:intron | 40.0% |
| !! | TCAATATTGGGTTGATAGCC+AGG | + | chr3_1:92988601-92988620 | Msa0388520:intron | 40.0% |
| AATACAAAAGGCCATCATCC+TGG | - | chr3_1:92988622-92988641 | None:intergenic | 40.0% | |
| TCCAGGCAATCAAACCAATA+GGG | - | chr3_1:92988881-92988900 | None:intergenic | 40.0% | |
| ATCCAGGCAATCAAACCAAT+AGG | - | chr3_1:92988882-92988901 | None:intergenic | 40.0% | |
| ATTACACACGGCATCATCTA+GGG | - | chr3_1:92988996-92989015 | None:intergenic | 40.0% | |
| AATTACACACGGCATCATCT+AGG | - | chr3_1:92988997-92989016 | None:intergenic | 40.0% | |
| AGATGATGCCGTGTGTAATT+TGG | + | chr3_1:92988997-92989016 | Msa0388520:intron | 40.0% | |
| GATGATGCCGTGTGTAATTT+GGG | + | chr3_1:92988998-92989017 | Msa0388520:intron | 40.0% | |
| TCAAAGCAAAAACTGAGGCT+TGG | + | chr3_1:92989236-92989255 | Msa0388520:intron | 40.0% | |
| ! | ATTCTGGTTGCATCTTCTCT+AGG | - | chr3_1:92989337-92989356 | None:intergenic | 40.0% |
| AGAGAAGATGCAACCAGAAT+TGG | + | chr3_1:92989337-92989356 | Msa0388520:CDS | 40.0% | |
| TGTTCCTAAATGCAGCTTCA+CGG | - | chr3_1:92989450-92989469 | None:intergenic | 40.0% | |
| CAGCTATGCGATCAAGAAAA+AGG | + | chr3_1:92989634-92989653 | Msa0388520:intron | 40.0% | |
| GCCAATCGTTAAGCATCATT+TGG | + | chr3_1:92989680-92989699 | Msa0388520:exon | 40.0% | |
| CTTAGTCCATGACTGTTTCA+AGG | + | chr3_1:92989848-92989867 | Msa0388520:three_prime_UTR | 40.0% | |
| TCAGCTTGGAAAACTGGTAT+TGG | - | chr3_1:92989944-92989963 | None:intergenic | 40.0% | |
| AATACTTCAACACGTCAGCT+TGG | - | chr3_1:92989958-92989977 | None:intergenic | 40.0% | |
| GATTGGGATCAACTTCGACT+GGG | - | chr3_1:92986187-92986206 | None:intergenic | 45.0% | |
| AGATTGGGATCAACTTCGAC+TGG | - | chr3_1:92986188-92986207 | None:intergenic | 45.0% | |
| CAAGAGACAGATCGGTAATC+TGG | - | chr3_1:92986686-92986705 | None:intergenic | 45.0% | |
| CAGATTACCGATCTGTCTCT+TGG | + | chr3_1:92986684-92986703 | Msa0388520:intron | 45.0% | |
| GATTACCGATCTGTCTCTTG+GGG | + | chr3_1:92986686-92986705 | Msa0388520:intron | 45.0% | |
| GTAATCCCCAAGAGACAGAT+CGG | - | chr3_1:92986694-92986713 | None:intergenic | 45.0% | |
| CTGTCTCTTGGGGATTACAT+TGG | + | chr3_1:92986696-92986715 | Msa0388520:CDS | 45.0% | |
| ACATATGTTCCTCACACTGC+TGG | + | chr3_1:92986741-92986760 | Msa0388520:CDS | 45.0% | |
| GTTAGTGAGCCTCTCAACAA+TGG | - | chr3_1:92986805-92986824 | None:intergenic | 45.0% | |
| ATGATGCACGGCAGAAACAA+CGG | + | chr3_1:92986831-92986850 | Msa0388520:CDS | 45.0% | |
| ! | TAGTTGATGCTGTCGTCAAC+AGG | + | chr3_1:92986937-92986956 | Msa0388520:CDS | 45.0% |
| CCTACTTACTCATCCGAATC+GGG | + | chr3_1:92987382-92987401 | Msa0388520:intron | 45.0% | |
| TGGTTTGATTGCCTGCATGA+TGG | + | chr3_1:92987436-92987455 | Msa0388520:intron | 45.0% | |
| GCTCTATCTGATCATTCTCC+TGG | + | chr3_1:92987472-92987491 | Msa0388520:intron | 45.0% | |
| ATAGAGAAGGATAGGTGGGT+TGG | + | chr3_1:92987989-92988008 | Msa0388520:intron | 45.0% | |
| TAAGATTGGGGGCTGTTGAT+TGG | + | chr3_1:92988046-92988065 | Msa0388520:intron | 45.0% | |
| !! | TCCCTATTGGTTTGATTGCC+TGG | + | chr3_1:92987429-92987448 | Msa0388520:intron | 45.0% |
| TGGTTTGATTGCCTGGATGA+TGG | + | chr3_1:92988884-92988903 | Msa0388520:intron | 45.0% | |
| ATGCCGTGTGTAATTTGGGT+AGG | + | chr3_1:92989002-92989021 | Msa0388520:intron | 45.0% | |
| AACTCCAGCAGATCCAATTC+TGG | - | chr3_1:92989353-92989372 | None:intergenic | 45.0% | |
| TTGGATCTGCTGGAGTTGTT+AGG | + | chr3_1:92989356-92989375 | Msa0388520:CDS | 45.0% | |
| TGGATATCTCTCCTCTTCGT+CGG | + | chr3_1:92989389-92989408 | Msa0388520:CDS | 45.0% | |
| GTTCCTAAATGCAGCTTCAC+GGG | - | chr3_1:92989449-92989468 | None:intergenic | 45.0% | |
| TGAACTCATTAACGCTGCCA+AGG | + | chr3_1:92989498-92989517 | Msa0388520:CDS | 45.0% | |
| GAACTCATTAACGCTGCCAA+GGG | + | chr3_1:92989499-92989518 | Msa0388520:CDS | 45.0% | |
| ATACCTGTTGGATGAACCCT+TGG | - | chr3_1:92989518-92989537 | None:intergenic | 45.0% | |
| TGAGATTGAGAGAGTTGCCA+AGG | + | chr3_1:92989658-92989677 | Msa0388520:CDS | 45.0% | |
| !! | TGATGCTTAACGATTGGCCT+TGG | - | chr3_1:92989678-92989697 | None:intergenic | 45.0% |
| AACACGTCAGCTTGGAAAAC+TGG | - | chr3_1:92989950-92989969 | None:intergenic | 45.0% | |
| GAAGGCAAGCAAGAGTGACA+GGG | - | chr3_1:92985998-92986017 | None:intergenic | 50.0% | |
| TGAAGGCAAGCAAGAGTGAC+AGG | - | chr3_1:92985999-92986018 | None:intergenic | 50.0% | |
| AACTTCGACTGGGATAGCGA+CGG | - | chr3_1:92986177-92986196 | None:intergenic | 50.0% | |
| GGGGATTACATTGGAGCAAG+AGG | + | chr3_1:92986705-92986724 | Msa0388520:CDS | 50.0% | |
| ATGTTCCTCACACTGCTGGT+AGG | + | chr3_1:92986745-92986764 | Msa0388520:CDS | 50.0% | |
| !! | GGTACTCAAAGAAGCGCTTC+AGG | + | chr3_1:92986766-92986785 | Msa0388520:CDS | 50.0% |
| CTCAGTGTCCCATTGTTGAG+AGG | + | chr3_1:92986793-92986812 | Msa0388520:CDS | 50.0% | |
| !! | CCCGATTCGGATGAGTAAGT+AGG | - | chr3_1:92987385-92987404 | None:intergenic | 50.0% |
| ACTTACTCATCCGAATCGGG+AGG | + | chr3_1:92987385-92987404 | Msa0388520:intron | 50.0% | |
| ! | ATTGGGGGCTGTTGATTGGT+TGG | + | chr3_1:92988050-92988069 | Msa0388520:intron | 50.0% |
| !! | TGGGTTGATAGCCAGGATGA+TGG | + | chr3_1:92988608-92988627 | Msa0388520:intron | 50.0% |
| GCAACCAGAATTGGATCTGC+TGG | + | chr3_1:92989346-92989365 | Msa0388520:CDS | 50.0% | |
| GATCTGCTGGAGTTGTTAGG+AGG | + | chr3_1:92989359-92989378 | Msa0388520:CDS | 50.0% | |
| GGATATCTCTCCTCTTCGTC+GGG | + | chr3_1:92989390-92989409 | Msa0388520:CDS | 50.0% | |
| TCCTCTTCGTCGGGTTAATC+AGG | + | chr3_1:92989399-92989418 | Msa0388520:CDS | 50.0% | |
| ACCTTGTAGATAGTGCGGCG+CGG | - | chr3_1:92986050-92986069 | None:intergenic | 55.0% | |
| AGCGACGGTTTCATCAGCCA+TGG | - | chr3_1:92986162-92986181 | None:intergenic | 55.0% | |
| GAACGTCGTCGAAGCTCCAT+TGG | - | chr3_1:92986232-92986251 | None:intergenic | 55.0% | |
| ATGGAGCTTCGACGACGTTC+AGG | + | chr3_1:92986232-92986251 | Msa0388520:CDS | 55.0% | |
| GAGTACCTACCAGCAGTGTG+AGG | - | chr3_1:92986753-92986772 | None:intergenic | 55.0% | |
| TGCTGGAGTTGTTAGGAGGC+AGG | + | chr3_1:92989363-92989382 | Msa0388520:CDS | 55.0% | |
| AGTTGTTAGGAGGCAGGCTG+TGG | + | chr3_1:92989369-92989388 | Msa0388520:CDS | 55.0% | |
| GCCTGATTAACCCGACGAAG+AGG | - | chr3_1:92989403-92989422 | None:intergenic | 55.0% | |
| GTGCCCGTGAAGCTGCATTT+AGG | + | chr3_1:92989443-92989462 | Msa0388520:CDS | 55.0% | |
| CTGCCAAGGGTTCATCCAAC+AGG | + | chr3_1:92989512-92989531 | Msa0388520:CDS | 55.0% | |
| GCCGCGCCGCACTATCTACA+AGG | + | chr3_1:92986046-92986065 | Msa0388520:five_prime_UTR | 65.0% | |
| CGCGGCCGTCAGCTTCTCAC+TGG | - | chr3_1:92986032-92986051 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 92985980 | 92990021 | 92985980 | ID=Msa0388520;Name=Msa0388520 |
| chr3_1 | mRNA | 92985980 | 92990021 | 92985980 | ID=Msa0388520-mRNA-1;Parent=Msa0388520;Name=Msa0388520-mRNA-1;_AED=0.15;_eAED=0.15;_QI=90|1|1|1|0.75|0.6|5|330|207 |
| chr3_1 | exon | 92985980 | 92986067 | 92985980 | ID=Msa0388520-mRNA-1:exon:26186;Parent=Msa0388520-mRNA-1 |
| chr3_1 | exon | 92986159 | 92986253 | 92986159 | ID=Msa0388520-mRNA-1:exon:26187;Parent=Msa0388520-mRNA-1 |
| chr3_1 | exon | 92986687 | 92986958 | 92986687 | ID=Msa0388520-mRNA-1:exon:26188;Parent=Msa0388520-mRNA-1 |
| chr3_1 | exon | 92989330 | 92989533 | 92989330 | ID=Msa0388520-mRNA-1:exon:26189;Parent=Msa0388520-mRNA-1 |
| chr3_1 | exon | 92989637 | 92990021 | 92989637 | ID=Msa0388520-mRNA-1:exon:26190;Parent=Msa0388520-mRNA-1 |
| chr3_1 | five_prime_UTR | 92985980 | 92986067 | 92985980 | ID=Msa0388520-mRNA-1:five_prime_utr;Parent=Msa0388520-mRNA-1 |
| chr3_1 | five_prime_UTR | 92986159 | 92986160 | 92986159 | ID=Msa0388520-mRNA-1:five_prime_utr;Parent=Msa0388520-mRNA-1 |
| chr3_1 | CDS | 92986161 | 92986253 | 92986161 | ID=Msa0388520-mRNA-1:cds;Parent=Msa0388520-mRNA-1 |
| chr3_1 | CDS | 92986687 | 92986958 | 92986687 | ID=Msa0388520-mRNA-1:cds;Parent=Msa0388520-mRNA-1 |
| chr3_1 | CDS | 92989330 | 92989533 | 92989330 | ID=Msa0388520-mRNA-1:cds;Parent=Msa0388520-mRNA-1 |
| chr3_1 | CDS | 92989637 | 92989691 | 92989637 | ID=Msa0388520-mRNA-1:cds;Parent=Msa0388520-mRNA-1 |
| chr3_1 | three_prime_UTR | 92989692 | 92990021 | 92989692 | ID=Msa0388520-mRNA-1:three_prime_utr;Parent=Msa0388520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
