Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130680 | XP_024625385.1 | 94.737 | 114 | 2 | 2 | 6 | 116 | 1 | 113 | 9.97e-64 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130680 | sp|Q8LCW9|RLA11_ARATH | 54.545 | 110 | 49 | 1 | 7 | 115 | 3 | 112 | 2.56e-25 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130680 | G7L532 | 94.737 | 114 | 2 | 2 | 6 | 116 | 1 | 113 | 4.76e-64 | 199 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0079560 | Msa1130680 | 0.800681 | 1.285932e-48 | -8.615850e-47 |
| Msa0086160 | Msa1130680 | 0.847021 | 1.504567e-59 | -8.615850e-47 |
| Msa0114600 | Msa1130680 | 0.810382 | 1.184916e-50 | -8.615850e-47 |
| Msa0602900 | Msa1130680 | 0.827587 | 1.441105e-54 | -8.615850e-47 |
| Msa0605890 | Msa1130680 | 0.800428 | 1.448178e-48 | -8.615850e-47 |
| Msa0643960 | Msa1130680 | 0.825163 | 5.443630e-54 | -8.615850e-47 |
| Msa0663400 | Msa1130680 | 0.839675 | 1.375056e-57 | -8.615850e-47 |
| Msa0826610 | Msa1130680 | 0.815357 | 9.634574e-52 | -8.615850e-47 |
| Msa0167860 | Msa1130680 | 0.806495 | 8.003133e-50 | -8.615850e-47 |
| Msa0179160 | Msa1130680 | 0.808556 | 2.922220e-50 | -8.615850e-47 |
| Msa0373350 | Msa1130680 | 0.828582 | 8.300074e-55 | -8.615850e-47 |
| Msa0377370 | Msa1130680 | 0.864113 | 1.535280e-64 | -8.615850e-47 |
| Msa0388520 | Msa1130680 | 0.800348 | 1.503077e-48 | -8.615850e-47 |
| Msa0426940 | Msa1130680 | 0.808886 | 2.484224e-50 | -8.615850e-47 |
| Msa0433060 | Msa1130680 | 0.850380 | 1.762576e-60 | -8.615850e-47 |
| Msa1013430 | Msa1130680 | 0.806207 | 9.199908e-50 | -8.615850e-47 |
| Msa1070810 | Msa1130680 | 0.829162 | 6.005403e-55 | -8.615850e-47 |
| Msa1085850 | Msa1130680 | 0.857088 | 2.070749e-62 | -8.615850e-47 |
| Msa0270160 | Msa1130680 | 0.818383 | 2.017689e-52 | -8.615850e-47 |
| Msa0277600 | Msa1130680 | 0.804861 | 1.762822e-49 | -8.615850e-47 |
| Msa0281330 | Msa1130680 | 0.805103 | 1.569082e-49 | -8.615850e-47 |
| Msa0313060 | Msa1130680 | 0.812928 | 3.312353e-51 | -8.615850e-47 |
| Msa1115190 | Msa1130680 | 0.826540 | 2.565030e-54 | -8.615850e-47 |
| Msa1118790 | Msa1130680 | 0.809910 | 1.497890e-50 | -8.615850e-47 |
| Msa1130680 | Msa1131030 | 0.902116 | 1.346109e-78 | -8.615850e-47 |
| Msa1130680 | Msa1158630 | 0.823287 | 1.502445e-53 | -8.615850e-47 |
| Msa1130680 | Msa1163980 | 0.823446 | 1.379482e-53 | -8.615850e-47 |
| Msa1130680 | Msa1165210 | 0.842557 | 2.405202e-58 | -8.615850e-47 |
| Msa1130680 | Msa1235950 | 0.827065 | 1.921554e-54 | -8.615850e-47 |
| Msa1130680 | Msa1235980 | 0.820022 | 8.540894e-53 | -8.615850e-47 |
| Msa1130680 | Msa1351020 | 0.810137 | 1.338613e-50 | -8.615850e-47 |
| Msa1130680 | Msa1407550 | 0.820244 | 7.598772e-53 | -8.615850e-47 |
| Msa1130680 | Msa1425070 | 0.902347 | 1.064132e-78 | -8.615850e-47 |
| Msa1130680 | Msa1462580 | 0.869213 | 3.665319e-66 | -8.615850e-47 |
| Msa0521730 | Msa1130680 | 0.830415 | 2.974355e-55 | -8.615850e-47 |
| Msa0524680 | Msa1130680 | 0.849007 | 4.260801e-60 | -8.615850e-47 |
| Msa0547920 | Msa1130680 | 0.812641 | 3.828320e-51 | -8.615850e-47 |
| Msa0568380 | Msa1130680 | 0.803236 | 3.837963e-49 | -8.615850e-47 |
| Msa0573550 | Msa1130680 | 0.807293 | 5.425350e-50 | -8.615850e-47 |
| Msa0574780 | Msa1130680 | 0.814289 | 1.661747e-51 | -8.615850e-47 |
| Msa0585570 | Msa1130680 | 0.839180 | 1.848706e-57 | -8.615850e-47 |
| Msa0864660 | Msa1130680 | 0.820689 | 6.007917e-53 | -8.615850e-47 |
| Msa0902730 | Msa1130680 | 0.801789 | 7.628014e-49 | -8.615850e-47 |
| Msa0929700 | Msa1130680 | 0.820308 | 7.345502e-53 | -8.615850e-47 |
| Msa0930890 | Msa1130680 | 0.829609 | 4.676872e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130680 | MtrunA17_Chr7g0276131 | 94.737 | 114 | 2 | 2 | 6 | 116 | 1 | 113 | 9.17e-68 | 199 |
| Msa1130680 | MtrunA17_Chr8g0345951 | 57.273 | 110 | 45 | 1 | 6 | 115 | 1 | 108 | 2.32e-32 | 109 |
| Msa1130680 | MtrunA17_Chr4g0013621 | 56.364 | 110 | 48 | 0 | 6 | 115 | 1 | 110 | 4.80e-26 | 93.6 |
| Msa1130680 | MtrunA17_Chr3g0127831 | 56.364 | 110 | 48 | 0 | 6 | 115 | 1 | 110 | 6.07e-24 | 88.6 |
| Msa1130680 | MtrunA17_Chr2g0311301 | 55.455 | 110 | 49 | 0 | 6 | 115 | 1 | 110 | 6.07e-24 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1130680 | AT5G24510.1 | 52.679 | 112 | 50 | 2 | 6 | 115 | 1 | 111 | 3.68e-32 | 109 |
| Msa1130680 | AT1G01100.4 | 54.545 | 110 | 49 | 1 | 7 | 115 | 3 | 112 | 2.60e-26 | 94.7 |
| Msa1130680 | AT1G01100.1 | 54.545 | 110 | 49 | 1 | 7 | 115 | 3 | 112 | 2.60e-26 | 94.7 |
| Msa1130680 | AT1G01100.2 | 54.545 | 110 | 49 | 1 | 7 | 115 | 3 | 112 | 2.60e-26 | 94.7 |
| Msa1130680 | AT4G00810.1 | 53.571 | 112 | 48 | 2 | 7 | 115 | 3 | 113 | 3.96e-26 | 94.4 |
| Msa1130680 | AT4G00810.2 | 53.571 | 112 | 48 | 2 | 7 | 115 | 3 | 113 | 3.96e-26 | 94.4 |
| Msa1130680 | AT1G01100.3 | 48.624 | 109 | 41 | 1 | 7 | 115 | 3 | 96 | 5.77e-26 | 93.6 |
| Msa1130680 | AT5G47700.1 | 54.054 | 111 | 49 | 1 | 7 | 115 | 3 | 113 | 9.06e-26 | 93.6 |
| Msa1130680 | AT5G47700.2 | 54.054 | 111 | 49 | 1 | 7 | 115 | 3 | 113 | 9.06e-26 | 93.6 |
Find 40 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTAGCTCTTTGAATAC+TGG | 0.295098 | 7_3:-82872696 | Msa1130680:three_prime_UTR |
| AGCAGCAGCTGGAGCAGCAG+CGG | 0.297502 | 7_3:+82872820 | None:intergenic |
| CTCTCTTCTTCCTCTGGCTC+TGG | 0.324115 | 7_3:+82872785 | None:intergenic |
| AAATGATATGATTGCTTGCT+TGG | 0.329661 | 7_3:-82872486 | Msa1130680:three_prime_UTR |
| TTCTTCTCAGCAGCAGCAGC+TGG | 0.337075 | 7_3:+82872809 | None:intergenic |
| ATTCGGCTTGTTCGATGAAT+AGG | 0.347729 | 7_3:-82872747 | Msa1130680:exon |
| AGAAGAGAGCGACGAGGAAA+TGG | 0.349286 | 7_3:-82872771 | Msa1130680:CDS |
| AGGTTGATGTTGAATCCTTC+TGG | 0.358591 | 7_3:-82872958 | Msa1130680:CDS |
| TTTGCTATCACTTGAGGATT+CGG | 0.364443 | 7_3:-82872652 | Msa1130680:three_prime_UTR |
| CCACCACCTGATGCTGCAAC+TGG | 0.368389 | 7_3:+82872845 | None:intergenic |
| GCTGCTCCAGTTGCAGCATC+AGG | 0.384530 | 7_3:-82872851 | Msa1130680:CDS |
| TGCTCCACCTCCAGCAGCAC+TGG | 0.392502 | 7_3:+82872883 | None:intergenic |
| TCGTCGCTCTCTTCTTCCTC+TGG | 0.421710 | 7_3:+82872779 | None:intergenic |
| GATTTGATTGCCAGTGCTGC+TGG | 0.422177 | 7_3:-82872893 | Msa1130680:CDS |
| TTCTTATGATCCTAATGGAT+TGG | 0.442659 | 7_3:-82872346 | Msa1130680:three_prime_UTR |
| CAACAAAGTTGTGATGTTGT+CGG | 0.447259 | 7_3:+82872991 | None:intergenic |
| ATGAACCGAACCAATCCATT+AGG | 0.451768 | 7_3:+82872336 | None:intergenic |
| ATTGCCAGTGCTGCTGGAGG+TGG | 0.452006 | 7_3:-82872887 | Msa1130680:CDS |
| ATGATCCTAATGGATTGGTT+CGG | 0.464603 | 7_3:-82872341 | Msa1130680:three_prime_UTR |
| AAAATAACAAAACATTTACT+TGG | 0.464648 | 7_3:+82872629 | None:intergenic |
| GTGATGTTGTCGGCAGTTGC+TGG | 0.481555 | 7_3:+82873001 | None:intergenic |
| AATGATATGATTGCTTGCTT+GGG | 0.483094 | 7_3:-82872485 | Msa1130680:three_prime_UTR |
| GAAGAGAGCGACGAGGAAAT+GGG | 0.488268 | 7_3:-82872770 | Msa1130680:CDS |
| CCAGTTGCAGCATCAGGTGG+TGG | 0.493184 | 7_3:-82872845 | Msa1130680:CDS |
| TTAGCTCTTTGAATACTGGT+TGG | 0.495732 | 7_3:-82872692 | Msa1130680:three_prime_UTR |
| GGATTCAACATCAACCTTTG+CGG | 0.496398 | 7_3:+82872964 | None:intergenic |
| AGCGACGAGGAAATGGGATT+CGG | 0.497435 | 7_3:-82872764 | Msa1130680:CDS |
| CTGGAATGTTGTCATCTTCG+AGG | 0.500813 | 7_3:+82873020 | None:intergenic |
| GCAAGTTTAGCGAATAAAGC+GGG | 0.558481 | 7_3:+82872935 | None:intergenic |
| TGTCATCTTCGAGGATGAGA+AGG | 0.559827 | 7_3:+82873029 | None:intergenic |
| GCTCCAGTTGCAGCATCAGG+TGG | 0.561855 | 7_3:-82872848 | Msa1130680:CDS |
| AACTTTGTTGAAATCCGCAA+AGG | 0.566474 | 7_3:-82872978 | Msa1130680:CDS |
| AGCGAATAAAGCGGGCCAGA+AGG | 0.567952 | 7_3:+82872943 | None:intergenic |
| AGCAAGTTTAGCGAATAAAG+CGG | 0.583424 | 7_3:+82872934 | None:intergenic |
| TGGAGGTGGAGCAGCTGTTG+CGG | 0.612651 | 7_3:-82872873 | Msa1130680:CDS |
| GTCATCTTCGAGGATGAGAA+GGG | 0.616441 | 7_3:+82873030 | None:intergenic |
| TGAGAAGAAACCAGAGCCAG+AGG | 0.638704 | 7_3:-82872795 | Msa1130680:CDS |
| TTGATTGCCAGTGCTGCTGG+AGG | 0.642263 | 7_3:-82872890 | Msa1130680:CDS |
| AGAGGAAGAAGAGAGCGACG+AGG | 0.663703 | 7_3:-82872777 | Msa1130680:CDS |
| TGTAGTGTGAAAATGTCGCT+CGG | 0.684963 | 7_3:-82873073 | Msa1130680:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATATGCAAATAAATA+TGG | - | chr7_3:82873202-82873221 | Msa1130680:intron | 10.0% |
| !! | AATAAATATGCAAATAAATA+TGG | - | chr7_3:82873202-82873221 | Msa1130680:intron | 10.0% |
| !! | AAATATAATAATTGTAGAAG+AGG | - | chr7_3:82872758-82872777 | Msa1130680:CDS | 15.0% |
| !! | TTTCTAAATGAAAAATCAAA+AGG | + | chr7_3:82873099-82873118 | None:intergenic | 15.0% |
| !!! | ATTTTTCATTTAGAAAGAAA+AGG | - | chr7_3:82873103-82873122 | Msa1130680:intron | 15.0% |
| !!! | TCCTTTTTGAAAAAAAAAAA+TGG | + | chr7_3:82873344-82873363 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTTCAAAAAGG+AGG | - | chr7_3:82873343-82873362 | Msa1130680:intron | 15.0% |
| !! | AAAATAACAAAACATTTACT+TGG | + | chr7_3:82874270-82874289 | None:intergenic | 15.0% |
| !!! | TCATTATCTTTTATCTTTTT+AGG | - | chr7_3:82874471-82874490 | Msa1130680:intron | 15.0% |
| !! | AAATATAATAATTGTAGAAG+AGG | - | chr7_3:82872758-82872777 | Msa1130680:CDS | 15.0% |
| !! | TTTCTAAATGAAAAATCAAA+AGG | + | chr7_3:82873099-82873118 | None:intergenic | 15.0% |
| !!! | ATTTTTCATTTAGAAAGAAA+AGG | - | chr7_3:82873103-82873122 | Msa1130680:intron | 15.0% |
| !!! | TCCTTTTTGAAAAAAAAAAA+TGG | + | chr7_3:82873344-82873363 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTTCAAAAAGG+AGG | - | chr7_3:82873343-82873362 | Msa1130680:intron | 15.0% |
| !! | AAAATAACAAAACATTTACT+TGG | + | chr7_3:82874270-82874289 | None:intergenic | 15.0% |
| !!! | TCATTATCTTTTATCTTTTT+AGG | - | chr7_3:82874471-82874490 | Msa1130680:intron | 15.0% |
| !! | TTAGAATTTAAATATCGAGA+GGG | + | chr7_3:82872357-82872376 | None:intergenic | 20.0% |
| !!! | TTTAGAATTTAAATATCGAG+AGG | + | chr7_3:82872358-82872377 | None:intergenic | 20.0% |
| !!! | GCAAAAAAACTAAATTGTTT+TGG | + | chr7_3:82872389-82872408 | None:intergenic | 20.0% |
| !! | CACGTAAAAAAAAAACAATT+AGG | + | chr7_3:82872474-82872493 | None:intergenic | 20.0% |
| !!! | CTAATTGTTTTTTTTTTACG+TGG | - | chr7_3:82872472-82872491 | Msa1130680:three_prime_UTR | 20.0% |
| !! | AAAAAAAATATTTCATCCCT+TGG | - | chr7_3:82872643-82872662 | Msa1130680:three_prime_UTR | 20.0% |
| !! | AAAAATTTAAACACTTCAGT+TGG | + | chr7_3:82872676-82872695 | None:intergenic | 20.0% |
| !!! | GATATTTTTTTTTCAGAGTA+AGG | - | chr7_3:82872853-82872872 | Msa1130680:CDS | 20.0% |
| !! | CATAAACATGCATTATTTAA+AGG | - | chr7_3:82873147-82873166 | Msa1130680:intron | 20.0% |
| !!! | GCCATTTTTTTTTTTCAAAA+AGG | - | chr7_3:82873340-82873359 | Msa1130680:intron | 20.0% |
| !! | AAAGGAACAAAAAAGAAAAA+AGG | - | chr7_3:82873520-82873539 | Msa1130680:intron | 20.0% |
| !!! | TTTGTTTTTGTTATTCGAAT+TGG | - | chr7_3:82873743-82873762 | Msa1130680:intron | 20.0% |
| !! | TTAGAATTTAAATATCGAGA+GGG | + | chr7_3:82872357-82872376 | None:intergenic | 20.0% |
| !!! | TTTAGAATTTAAATATCGAG+AGG | + | chr7_3:82872358-82872377 | None:intergenic | 20.0% |
| !!! | GCAAAAAAACTAAATTGTTT+TGG | + | chr7_3:82872389-82872408 | None:intergenic | 20.0% |
| !! | CACGTAAAAAAAAAACAATT+AGG | + | chr7_3:82872474-82872493 | None:intergenic | 20.0% |
| !!! | CTAATTGTTTTTTTTTTACG+TGG | - | chr7_3:82872472-82872491 | Msa1130680:three_prime_UTR | 20.0% |
| !! | AAAAAAAATATTTCATCCCT+TGG | - | chr7_3:82872643-82872662 | Msa1130680:three_prime_UTR | 20.0% |
| !! | AAAAATTTAAACACTTCAGT+TGG | + | chr7_3:82872676-82872695 | None:intergenic | 20.0% |
| !!! | GATATTTTTTTTTCAGAGTA+AGG | - | chr7_3:82872853-82872872 | Msa1130680:CDS | 20.0% |
| !! | CATAAACATGCATTATTTAA+AGG | - | chr7_3:82873147-82873166 | Msa1130680:intron | 20.0% |
| !!! | GCCATTTTTTTTTTTCAAAA+AGG | - | chr7_3:82873340-82873359 | Msa1130680:intron | 20.0% |
| !! | AAAGGAACAAAAAAGAAAAA+AGG | - | chr7_3:82873520-82873539 | Msa1130680:intron | 20.0% |
| !!! | TTTGTTTTTGTTATTCGAAT+TGG | - | chr7_3:82873743-82873762 | Msa1130680:intron | 20.0% |
| !!! | ACAAAAATTGCAACTTGTTT+TGG | + | chr7_3:82872566-82872585 | None:intergenic | 25.0% |
| ! | TTTAGTGTTTACGAAAAACT+CGG | - | chr7_3:82872988-82873007 | Msa1130680:CDS | 25.0% |
| ! | CAAACAAATTTAACATAACG+AGG | + | chr7_3:82873018-82873037 | None:intergenic | 25.0% |
| !! | CTGTTTTGTATTATTGCTTT+TGG | + | chr7_3:82873260-82873279 | None:intergenic | 25.0% |
| ! | GAACAAAAAAGAAAAAAGGA+GGG | - | chr7_3:82873524-82873543 | Msa1130680:intron | 25.0% |
| !! | GCAAATGTTTTGTGAAATTA+GGG | + | chr7_3:82873656-82873675 | None:intergenic | 25.0% |
| ! | CTAATTTCACAAAACATTTG+CGG | - | chr7_3:82873655-82873674 | Msa1130680:intron | 25.0% |
| !!! | TTTGTTATTCGAATTGGAAT+TGG | - | chr7_3:82873749-82873768 | Msa1130680:intron | 25.0% |
| ! | TTGCTGAGAAGAAAAATATT+AGG | - | chr7_3:82873980-82873999 | Msa1130680:intron | 25.0% |
| ! | TGCTGAGAAGAAAAATATTA+GGG | - | chr7_3:82873981-82874000 | Msa1130680:intron | 25.0% |
| !!! | TTTTATTTTGCTATCACTTG+AGG | - | chr7_3:82874238-82874257 | Msa1130680:intron | 25.0% |
| !! | AGATTTTCTTATGATCCTAA+TGG | - | chr7_3:82874545-82874564 | Msa1130680:intron | 25.0% |
| !!! | ACAAAAATTGCAACTTGTTT+TGG | + | chr7_3:82872566-82872585 | None:intergenic | 25.0% |
| ! | TTTAGTGTTTACGAAAAACT+CGG | - | chr7_3:82872988-82873007 | Msa1130680:CDS | 25.0% |
| ! | CAAACAAATTTAACATAACG+AGG | + | chr7_3:82873018-82873037 | None:intergenic | 25.0% |
| !! | CTGTTTTGTATTATTGCTTT+TGG | + | chr7_3:82873260-82873279 | None:intergenic | 25.0% |
| ! | GAACAAAAAAGAAAAAAGGA+GGG | - | chr7_3:82873524-82873543 | Msa1130680:intron | 25.0% |
| !! | GCAAATGTTTTGTGAAATTA+GGG | + | chr7_3:82873656-82873675 | None:intergenic | 25.0% |
| ! | CTAATTTCACAAAACATTTG+CGG | - | chr7_3:82873655-82873674 | Msa1130680:intron | 25.0% |
| !!! | TTTGTTATTCGAATTGGAAT+TGG | - | chr7_3:82873749-82873768 | Msa1130680:intron | 25.0% |
| ! | TTGCTGAGAAGAAAAATATT+AGG | - | chr7_3:82873980-82873999 | Msa1130680:intron | 25.0% |
| ! | TGCTGAGAAGAAAAATATTA+GGG | - | chr7_3:82873981-82874000 | Msa1130680:intron | 25.0% |
| !!! | TTTTATTTTGCTATCACTTG+AGG | - | chr7_3:82874238-82874257 | Msa1130680:intron | 25.0% |
| !! | AGATTTTCTTATGATCCTAA+TGG | - | chr7_3:82874545-82874564 | Msa1130680:intron | 25.0% |
| ! | TTTAGTCTTCAACAACGAAA+GGG | + | chr7_3:82872424-82872443 | None:intergenic | 30.0% |
| ! | ATTTAGTCTTCAACAACGAA+AGG | + | chr7_3:82872425-82872444 | None:intergenic | 30.0% |
| ATAACACTAGTACAACACAA+AGG | + | chr7_3:82872825-82872844 | None:intergenic | 30.0% | |
| TCAGAGTAAGGATGAAAATA+TGG | - | chr7_3:82872865-82872884 | Msa1130680:CDS | 30.0% | |
| ATTAAAATCAGCGAACAACT+CGG | - | chr7_3:82873464-82873483 | Msa1130680:intron | 30.0% | |
| TTTACTCAAATCACTGCAAA+AGG | - | chr7_3:82873496-82873515 | Msa1130680:intron | 30.0% | |
| GGAACAAAAAAGAAAAAAGG+AGG | - | chr7_3:82873523-82873542 | Msa1130680:intron | 30.0% | |
| ACCATACTTCTATTCTATAC+CGG | + | chr7_3:82873567-82873586 | None:intergenic | 30.0% | |
| ! | ATAGAAGTATGGTTCCAAAA+TGG | - | chr7_3:82873574-82873593 | Msa1130680:intron | 30.0% |
| ! | TAGAAGTATGGTTCCAAAAT+GGG | - | chr7_3:82873575-82873594 | Msa1130680:intron | 30.0% |
| ! | TTTTGTGAAATTAGGGTTTC+GGG | + | chr7_3:82873649-82873668 | None:intergenic | 30.0% |
| ! | GTTTTGTGAAATTAGGGTTT+CGG | + | chr7_3:82873650-82873669 | None:intergenic | 30.0% |
| ! | CGCAAATGTTTTGTGAAATT+AGG | + | chr7_3:82873657-82873676 | None:intergenic | 30.0% |
| AAATCAAGATCTGATCTGTT+AGG | + | chr7_3:82873800-82873819 | None:intergenic | 30.0% | |
| ! | TCTATTAGCTCTTTGAATAC+TGG | - | chr7_3:82874200-82874219 | Msa1130680:intron | 30.0% |
| AAATGATATGATTGCTTGCT+TGG | - | chr7_3:82874410-82874429 | Msa1130680:intron | 30.0% | |
| AATGATATGATTGCTTGCTT+GGG | - | chr7_3:82874411-82874430 | Msa1130680:intron | 30.0% | |
| ! | TTCTTATGATCCTAATGGAT+TGG | - | chr7_3:82874550-82874569 | Msa1130680:intron | 30.0% |
| ! | TTTAGTCTTCAACAACGAAA+GGG | + | chr7_3:82872424-82872443 | None:intergenic | 30.0% |
| ! | ATTTAGTCTTCAACAACGAA+AGG | + | chr7_3:82872425-82872444 | None:intergenic | 30.0% |
| ATAACACTAGTACAACACAA+AGG | + | chr7_3:82872825-82872844 | None:intergenic | 30.0% | |
| TCAGAGTAAGGATGAAAATA+TGG | - | chr7_3:82872865-82872884 | Msa1130680:CDS | 30.0% | |
| ATTAAAATCAGCGAACAACT+CGG | - | chr7_3:82873464-82873483 | Msa1130680:intron | 30.0% | |
| TTTACTCAAATCACTGCAAA+AGG | - | chr7_3:82873496-82873515 | Msa1130680:intron | 30.0% | |
| GGAACAAAAAAGAAAAAAGG+AGG | - | chr7_3:82873523-82873542 | Msa1130680:intron | 30.0% | |
| ACCATACTTCTATTCTATAC+CGG | + | chr7_3:82873567-82873586 | None:intergenic | 30.0% | |
| ! | ATAGAAGTATGGTTCCAAAA+TGG | - | chr7_3:82873574-82873593 | Msa1130680:intron | 30.0% |
| ! | TAGAAGTATGGTTCCAAAAT+GGG | - | chr7_3:82873575-82873594 | Msa1130680:intron | 30.0% |
| ! | TTTTGTGAAATTAGGGTTTC+GGG | + | chr7_3:82873649-82873668 | None:intergenic | 30.0% |
| ! | GTTTTGTGAAATTAGGGTTT+CGG | + | chr7_3:82873650-82873669 | None:intergenic | 30.0% |
| ! | CGCAAATGTTTTGTGAAATT+AGG | + | chr7_3:82873657-82873676 | None:intergenic | 30.0% |
| AAATCAAGATCTGATCTGTT+AGG | + | chr7_3:82873800-82873819 | None:intergenic | 30.0% | |
| ! | TCTATTAGCTCTTTGAATAC+TGG | - | chr7_3:82874200-82874219 | Msa1130680:intron | 30.0% |
| AAATGATATGATTGCTTGCT+TGG | - | chr7_3:82874410-82874429 | Msa1130680:intron | 30.0% | |
| AATGATATGATTGCTTGCTT+GGG | - | chr7_3:82874411-82874430 | Msa1130680:intron | 30.0% | |
| ! | TTCTTATGATCCTAATGGAT+TGG | - | chr7_3:82874550-82874569 | Msa1130680:intron | 30.0% |
| TTTAAATATCGAGAGGGAGA+GGG | + | chr7_3:82872351-82872370 | None:intergenic | 35.0% | |
| ATTTAAATATCGAGAGGGAG+AGG | + | chr7_3:82872352-82872371 | None:intergenic | 35.0% | |
| AACGAAAGGGATTAAGTTAC+AGG | + | chr7_3:82872411-82872430 | None:intergenic | 35.0% | |
| AAAGGATAAGTGACGGTTTA+GGG | + | chr7_3:82872807-82872826 | None:intergenic | 35.0% | |
| ACAACACAAAGGATAAGTGA+CGG | + | chr7_3:82872814-82872833 | None:intergenic | 35.0% | |
| ! | CGAACTTATCTAGAATTGAC+TGG | - | chr7_3:82872905-82872924 | Msa1130680:CDS | 35.0% |
| CAAATCACTGCAAAAGGAAA+AGG | - | chr7_3:82873502-82873521 | Msa1130680:intron | 35.0% | |
| TCCGGTATAGAATAGAAGTA+TGG | - | chr7_3:82873563-82873582 | Msa1130680:intron | 35.0% | |
| !!! | CTTTATGTTTTGGCCCATTT+TGG | + | chr7_3:82873591-82873610 | None:intergenic | 35.0% |
| !! | TTCTAATGCTGATTCTCCTT+GGG | + | chr7_3:82873614-82873633 | None:intergenic | 35.0% |
| !! | ATTCTAATGCTGATTCTCCT+TGG | + | chr7_3:82873615-82873634 | None:intergenic | 35.0% |
| AAGGAGAATCAGCATTAGAA+TGG | - | chr7_3:82873614-82873633 | Msa1130680:intron | 35.0% | |
| TTTGTGAAATTAGGGTTTCG+GGG | + | chr7_3:82873648-82873667 | None:intergenic | 35.0% | |
| GTGTTACCTGAAATTGAGAT+CGG | + | chr7_3:82873719-82873738 | None:intergenic | 35.0% | |
| CAACAAAGTTGTGATGTTGT+CGG | + | chr7_3:82873908-82873927 | None:intergenic | 35.0% | |
| AACTTTGTTGAAATCCGCAA+AGG | - | chr7_3:82873918-82873937 | Msa1130680:intron | 35.0% | |
| AGCAAGTTTAGCGAATAAAG+CGG | + | chr7_3:82873965-82873984 | None:intergenic | 35.0% | |
| ! | TTAGCTCTTTGAATACTGGT+TGG | - | chr7_3:82874204-82874223 | Msa1130680:intron | 35.0% |
| ! | TTTGCTATCACTTGAGGATT+CGG | - | chr7_3:82874244-82874263 | Msa1130680:intron | 35.0% |
| !! | ATGATCCTAATGGATTGGTT+CGG | - | chr7_3:82874555-82874574 | Msa1130680:intron | 35.0% |
| TTTAAATATCGAGAGGGAGA+GGG | + | chr7_3:82872351-82872370 | None:intergenic | 35.0% | |
| ATTTAAATATCGAGAGGGAG+AGG | + | chr7_3:82872352-82872371 | None:intergenic | 35.0% | |
| AACGAAAGGGATTAAGTTAC+AGG | + | chr7_3:82872411-82872430 | None:intergenic | 35.0% | |
| AAAGGATAAGTGACGGTTTA+GGG | + | chr7_3:82872807-82872826 | None:intergenic | 35.0% | |
| ACAACACAAAGGATAAGTGA+CGG | + | chr7_3:82872814-82872833 | None:intergenic | 35.0% | |
| ! | CGAACTTATCTAGAATTGAC+TGG | - | chr7_3:82872905-82872924 | Msa1130680:CDS | 35.0% |
| CAAATCACTGCAAAAGGAAA+AGG | - | chr7_3:82873502-82873521 | Msa1130680:intron | 35.0% | |
| TCCGGTATAGAATAGAAGTA+TGG | - | chr7_3:82873563-82873582 | Msa1130680:intron | 35.0% | |
| !!! | CTTTATGTTTTGGCCCATTT+TGG | + | chr7_3:82873591-82873610 | None:intergenic | 35.0% |
| !! | TTCTAATGCTGATTCTCCTT+GGG | + | chr7_3:82873614-82873633 | None:intergenic | 35.0% |
| !! | ATTCTAATGCTGATTCTCCT+TGG | + | chr7_3:82873615-82873634 | None:intergenic | 35.0% |
| AAGGAGAATCAGCATTAGAA+TGG | - | chr7_3:82873614-82873633 | Msa1130680:intron | 35.0% | |
| TTTGTGAAATTAGGGTTTCG+GGG | + | chr7_3:82873648-82873667 | None:intergenic | 35.0% | |
| GTGTTACCTGAAATTGAGAT+CGG | + | chr7_3:82873719-82873738 | None:intergenic | 35.0% | |
| CAACAAAGTTGTGATGTTGT+CGG | + | chr7_3:82873908-82873927 | None:intergenic | 35.0% | |
| AACTTTGTTGAAATCCGCAA+AGG | - | chr7_3:82873918-82873937 | Msa1130680:intron | 35.0% | |
| AGCAAGTTTAGCGAATAAAG+CGG | + | chr7_3:82873965-82873984 | None:intergenic | 35.0% | |
| ! | TTAGCTCTTTGAATACTGGT+TGG | - | chr7_3:82874204-82874223 | Msa1130680:intron | 35.0% |
| ! | TTTGCTATCACTTGAGGATT+CGG | - | chr7_3:82874244-82874263 | Msa1130680:intron | 35.0% |
| !! | ATGATCCTAATGGATTGGTT+CGG | - | chr7_3:82874555-82874574 | Msa1130680:intron | 35.0% |
| TTAAATATCGAGAGGGAGAG+GGG | + | chr7_3:82872350-82872369 | None:intergenic | 40.0% | |
| !! | TTCAGTTGGTAAGCTTCCAA+GGG | + | chr7_3:82872662-82872681 | None:intergenic | 40.0% |
| AAGGATAAGTGACGGTTTAG+GGG | + | chr7_3:82872806-82872825 | None:intergenic | 40.0% | |
| CAAAGGATAAGTGACGGTTT+AGG | + | chr7_3:82872808-82872827 | None:intergenic | 40.0% | |
| !! | TCTCCTTGGGCTTTATGTTT+TGG | + | chr7_3:82873601-82873620 | None:intergenic | 40.0% |
| TCAAGATCTGATCTGTTAGG+AGG | + | chr7_3:82873797-82873816 | None:intergenic | 40.0% | |
| TGTAGTGTGAAAATGTCGCT+CGG | - | chr7_3:82873823-82873842 | Msa1130680:intron | 40.0% | |
| GGATTCAACATCAACCTTTG+CGG | + | chr7_3:82873935-82873954 | None:intergenic | 40.0% | |
| !! | AGGTTGATGTTGAATCCTTC+TGG | - | chr7_3:82873938-82873957 | Msa1130680:intron | 40.0% |
| GCAAGTTTAGCGAATAAAGC+GGG | + | chr7_3:82873964-82873983 | None:intergenic | 40.0% | |
| ! | ATTCGGCTTGTTCGATGAAT+AGG | - | chr7_3:82874149-82874168 | Msa1130680:intron | 40.0% |
| ATGAACCGAACCAATCCATT+AGG | + | chr7_3:82874563-82874582 | None:intergenic | 40.0% | |
| TTAAATATCGAGAGGGAGAG+GGG | + | chr7_3:82872350-82872369 | None:intergenic | 40.0% | |
| !! | TTCAGTTGGTAAGCTTCCAA+GGG | + | chr7_3:82872662-82872681 | None:intergenic | 40.0% |
| AAGGATAAGTGACGGTTTAG+GGG | + | chr7_3:82872806-82872825 | None:intergenic | 40.0% | |
| CAAAGGATAAGTGACGGTTT+AGG | + | chr7_3:82872808-82872827 | None:intergenic | 40.0% | |
| !! | TCTCCTTGGGCTTTATGTTT+TGG | + | chr7_3:82873601-82873620 | None:intergenic | 40.0% |
| TCAAGATCTGATCTGTTAGG+AGG | + | chr7_3:82873797-82873816 | None:intergenic | 40.0% | |
| TGTAGTGTGAAAATGTCGCT+CGG | - | chr7_3:82873823-82873842 | Msa1130680:intron | 40.0% | |
| GGATTCAACATCAACCTTTG+CGG | + | chr7_3:82873935-82873954 | None:intergenic | 40.0% | |
| !! | AGGTTGATGTTGAATCCTTC+TGG | - | chr7_3:82873938-82873957 | Msa1130680:intron | 40.0% |
| GCAAGTTTAGCGAATAAAGC+GGG | + | chr7_3:82873964-82873983 | None:intergenic | 40.0% | |
| ! | ATTCGGCTTGTTCGATGAAT+AGG | - | chr7_3:82874149-82874168 | Msa1130680:intron | 40.0% |
| ATGAACCGAACCAATCCATT+AGG | + | chr7_3:82874563-82874582 | None:intergenic | 40.0% | |
| !! | CTTCAGTTGGTAAGCTTCCA+AGG | + | chr7_3:82872663-82872682 | None:intergenic | 45.0% |
| ATAAGTGACGGTTTAGGGGA+GGG | + | chr7_3:82872802-82872821 | None:intergenic | 45.0% | |
| TCGTCTCCGATCTCAATTTC+AGG | - | chr7_3:82873710-82873729 | Msa1130680:intron | 45.0% | |
| GTCATCTTCGAGGATGAGAA+GGG | + | chr7_3:82873869-82873888 | None:intergenic | 45.0% | |
| TGTCATCTTCGAGGATGAGA+AGG | + | chr7_3:82873870-82873889 | None:intergenic | 45.0% | |
| CTGGAATGTTGTCATCTTCG+AGG | + | chr7_3:82873879-82873898 | None:intergenic | 45.0% | |
| !! | CTTCAGTTGGTAAGCTTCCA+AGG | + | chr7_3:82872663-82872682 | None:intergenic | 45.0% |
| ATAAGTGACGGTTTAGGGGA+GGG | + | chr7_3:82872802-82872821 | None:intergenic | 45.0% | |
| TCGTCTCCGATCTCAATTTC+AGG | - | chr7_3:82873710-82873729 | Msa1130680:intron | 45.0% | |
| GTCATCTTCGAGGATGAGAA+GGG | + | chr7_3:82873869-82873888 | None:intergenic | 45.0% | |
| TGTCATCTTCGAGGATGAGA+AGG | + | chr7_3:82873870-82873889 | None:intergenic | 45.0% | |
| CTGGAATGTTGTCATCTTCG+AGG | + | chr7_3:82873879-82873898 | None:intergenic | 45.0% | |
| !! | AATTAAAAAAATTATCAAAA+AGG | - | chr7_3:82873050-82873069 | Msa1130680:CDS | 5.0% |
| !! | AATTAAAAAAATTATCAAAA+AGG | - | chr7_3:82873050-82873069 | Msa1130680:CDS | 5.0% |
| GATAAGTGACGGTTTAGGGG+AGG | + | chr7_3:82872803-82872822 | None:intergenic | 50.0% | |
| CGTACACATGTGTGTGTGTG+TGG | + | chr7_3:82873303-82873322 | None:intergenic | 50.0% | |
| ! | GCTCAAGTCGAGTTTCGAGT+TGG | + | chr7_3:82873409-82873428 | None:intergenic | 50.0% |
| GGTTACGAAGAGTAGCAGTC+CGG | - | chr7_3:82873545-82873564 | Msa1130680:intron | 50.0% | |
| GGGCCAAAACATAAAGCCCA+AGG | - | chr7_3:82873595-82873614 | Msa1130680:intron | 50.0% | |
| AGACGACGAGAAGAGTAAGG+AGG | + | chr7_3:82873696-82873715 | None:intergenic | 50.0% | |
| GATTTGATTGCCAGTGCTGC+TGG | - | chr7_3:82874003-82874022 | Msa1130680:intron | 50.0% | |
| TGAGAAGAAACCAGAGCCAG+AGG | - | chr7_3:82874101-82874120 | Msa1130680:intron | 50.0% | |
| AGAAGAGAGCGACGAGGAAA+TGG | - | chr7_3:82874125-82874144 | Msa1130680:intron | 50.0% | |
| GAAGAGAGCGACGAGGAAAT+GGG | - | chr7_3:82874126-82874145 | Msa1130680:intron | 50.0% | |
| AGCGACGAGGAAATGGGATT+CGG | - | chr7_3:82874132-82874151 | Msa1130680:intron | 50.0% | |
| GATAAGTGACGGTTTAGGGG+AGG | + | chr7_3:82872803-82872822 | None:intergenic | 50.0% | |
| CGTACACATGTGTGTGTGTG+TGG | + | chr7_3:82873303-82873322 | None:intergenic | 50.0% | |
| ! | GCTCAAGTCGAGTTTCGAGT+TGG | + | chr7_3:82873409-82873428 | None:intergenic | 50.0% |
| GGTTACGAAGAGTAGCAGTC+CGG | - | chr7_3:82873545-82873564 | Msa1130680:intron | 50.0% | |
| GGGCCAAAACATAAAGCCCA+AGG | - | chr7_3:82873595-82873614 | Msa1130680:intron | 50.0% | |
| AGACGACGAGAAGAGTAAGG+AGG | + | chr7_3:82873696-82873715 | None:intergenic | 50.0% | |
| GATTTGATTGCCAGTGCTGC+TGG | - | chr7_3:82874003-82874022 | Msa1130680:intron | 50.0% | |
| TGAGAAGAAACCAGAGCCAG+AGG | - | chr7_3:82874101-82874120 | Msa1130680:intron | 50.0% | |
| AGAAGAGAGCGACGAGGAAA+TGG | - | chr7_3:82874125-82874144 | Msa1130680:intron | 50.0% | |
| GAAGAGAGCGACGAGGAAAT+GGG | - | chr7_3:82874126-82874145 | Msa1130680:intron | 50.0% | |
| AGCGACGAGGAAATGGGATT+CGG | - | chr7_3:82874132-82874151 | Msa1130680:intron | 50.0% | |
| ! | GGTTTAGGGGAGGGAAGTGT+AGG | + | chr7_3:82872793-82872812 | None:intergenic | 55.0% |
| CGGAGACGACGAGAAGAGTA+AGG | + | chr7_3:82873699-82873718 | None:intergenic | 55.0% | |
| GTGATGTTGTCGGCAGTTGC+TGG | + | chr7_3:82873898-82873917 | None:intergenic | 55.0% | |
| AGCGAATAAAGCGGGCCAGA+AGG | + | chr7_3:82873956-82873975 | None:intergenic | 55.0% | |
| ! | TTGATTGCCAGTGCTGCTGG+AGG | - | chr7_3:82874006-82874025 | Msa1130680:intron | 55.0% |
| TTCTTCTCAGCAGCAGCAGC+TGG | + | chr7_3:82874090-82874109 | None:intergenic | 55.0% | |
| ! | CTCTCTTCTTCCTCTGGCTC+TGG | + | chr7_3:82874114-82874133 | None:intergenic | 55.0% |
| TCGTCGCTCTCTTCTTCCTC+TGG | + | chr7_3:82874120-82874139 | None:intergenic | 55.0% | |
| AGAGGAAGAAGAGAGCGACG+AGG | - | chr7_3:82874119-82874138 | Msa1130680:intron | 55.0% | |
| ! | GGTTTAGGGGAGGGAAGTGT+AGG | + | chr7_3:82872793-82872812 | None:intergenic | 55.0% |
| CGGAGACGACGAGAAGAGTA+AGG | + | chr7_3:82873699-82873718 | None:intergenic | 55.0% | |
| GTGATGTTGTCGGCAGTTGC+TGG | + | chr7_3:82873898-82873917 | None:intergenic | 55.0% | |
| AGCGAATAAAGCGGGCCAGA+AGG | + | chr7_3:82873956-82873975 | None:intergenic | 55.0% | |
| ! | TTGATTGCCAGTGCTGCTGG+AGG | - | chr7_3:82874006-82874025 | Msa1130680:intron | 55.0% |
| TTCTTCTCAGCAGCAGCAGC+TGG | + | chr7_3:82874090-82874109 | None:intergenic | 55.0% | |
| ! | CTCTCTTCTTCCTCTGGCTC+TGG | + | chr7_3:82874114-82874133 | None:intergenic | 55.0% |
| TCGTCGCTCTCTTCTTCCTC+TGG | + | chr7_3:82874120-82874139 | None:intergenic | 55.0% | |
| AGAGGAAGAAGAGAGCGACG+AGG | - | chr7_3:82874119-82874138 | Msa1130680:intron | 55.0% | |
| ! | ATTGCCAGTGCTGCTGGAGG+TGG | - | chr7_3:82874009-82874028 | Msa1130680:intron | 60.0% |
| TGGAGGTGGAGCAGCTGTTG+CGG | - | chr7_3:82874023-82874042 | Msa1130680:intron | 60.0% | |
| GCTGCTCCAGTTGCAGCATC+AGG | - | chr7_3:82874045-82874064 | Msa1130680:intron | 60.0% | |
| GCTCCAGTTGCAGCATCAGG+TGG | - | chr7_3:82874048-82874067 | Msa1130680:intron | 60.0% | |
| CCACCACCTGATGCTGCAAC+TGG | + | chr7_3:82874054-82874073 | None:intergenic | 60.0% | |
| CCAGTTGCAGCATCAGGTGG+TGG | - | chr7_3:82874051-82874070 | Msa1130680:intron | 60.0% | |
| ! | ATTGCCAGTGCTGCTGGAGG+TGG | - | chr7_3:82874009-82874028 | Msa1130680:intron | 60.0% |
| TGGAGGTGGAGCAGCTGTTG+CGG | - | chr7_3:82874023-82874042 | Msa1130680:intron | 60.0% | |
| GCTGCTCCAGTTGCAGCATC+AGG | - | chr7_3:82874045-82874064 | Msa1130680:intron | 60.0% | |
| GCTCCAGTTGCAGCATCAGG+TGG | - | chr7_3:82874048-82874067 | Msa1130680:intron | 60.0% | |
| CCACCACCTGATGCTGCAAC+TGG | + | chr7_3:82874054-82874073 | None:intergenic | 60.0% | |
| CCAGTTGCAGCATCAGGTGG+TGG | - | chr7_3:82874051-82874070 | Msa1130680:intron | 60.0% | |
| TGCTCCACCTCCAGCAGCAC+TGG | + | chr7_3:82874016-82874035 | None:intergenic | 65.0% | |
| AGCAGCAGCTGGAGCAGCAG+CGG | + | chr7_3:82874079-82874098 | None:intergenic | 65.0% | |
| TGCTCCACCTCCAGCAGCAC+TGG | + | chr7_3:82874016-82874035 | None:intergenic | 65.0% | |
| AGCAGCAGCTGGAGCAGCAG+CGG | + | chr7_3:82874079-82874098 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 82872317 | 82874601 | 82872317 | ID=Msa1130680;Name=Msa1130680 |
| chr7_3 | mRNA | 82872317 | 82874601 | 82872317 | ID=Msa1130680-mRNA-1;Parent=Msa1130680;Name=Msa1130680-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0.5|0.5|0|0|2|431|116 |
| chr7_3 | exon | 82872317 | 82873090 | 82872317 | ID=Msa1130680-mRNA-1:exon:24544;Parent=Msa1130680-mRNA-1 |
| chr7_3 | exon | 82874594 | 82874601 | 82874594 | ID=Msa1130680-mRNA-1:exon:24543;Parent=Msa1130680-mRNA-1 |
| chr7_3 | CDS | 82874594 | 82874601 | 82874594 | ID=Msa1130680-mRNA-1:cds;Parent=Msa1130680-mRNA-1 |
| chr7_3 | CDS | 82872748 | 82873090 | 82872748 | ID=Msa1130680-mRNA-1:cds;Parent=Msa1130680-mRNA-1 |
| chr7_3 | three_prime_UTR | 82872317 | 82872747 | 82872317 | ID=Msa1130680-mRNA-1:three_prime_utr;Parent=Msa1130680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
