Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186280 | XP_013462296.1 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 8.11e-99 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186280 | sp|P26585|HMGL_SOYBN | 79.508 | 122 | 22 | 2 | 1 | 121 | 1 | 120 | 6.74e-57 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186280 | I3S988 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 3.87e-99 | 291 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0186280 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0186280 | Msa0386070 | 0.918339 | 1.759783e-86 | -8.615850e-47 |
| Msa0186280 | Msa0387350 | 0.966163 | 1.481637e-125 | -8.615850e-47 |
| Msa0186280 | Msa0661680 | 0.876326 | 1.525839e-68 | -8.615850e-47 |
| Msa0186280 | Msa1173530 | 0.878442 | 2.798643e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186280 | MtrunA17_Chr3g0143991 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 7.46e-103 | 291 |
| Msa0186280 | MtrunA17_Chr5g0407011 | 57.895 | 133 | 48 | 4 | 5 | 137 | 3 | 127 | 1.42e-37 | 125 |
| Msa0186280 | MtrunA17_Chr8g0370431 | 60.150 | 133 | 44 | 5 | 5 | 137 | 3 | 126 | 1.77e-37 | 125 |
| Msa0186280 | MtrunA17_Chr7g0242251 | 70.297 | 101 | 28 | 1 | 41 | 141 | 47 | 145 | 5.84e-36 | 122 |
| Msa0186280 | MtrunA17_Chr1g0212341 | 60.000 | 80 | 32 | 0 | 41 | 120 | 98 | 177 | 5.53e-27 | 100 |
| Msa0186280 | MtrunA17_Chr4g0052011 | 47.674 | 86 | 45 | 0 | 35 | 120 | 54 | 139 | 4.26e-23 | 89.0 |
| Msa0186280 | MtrunA17_Chr1g0155251 | 46.667 | 75 | 39 | 1 | 41 | 115 | 554 | 627 | 1.11e-12 | 64.7 |
| Msa0186280 | MtrunA17_Chr8g0387931 | 35.714 | 98 | 60 | 1 | 41 | 138 | 262 | 356 | 2.94e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186280 | AT1G20693.2 | 66.013 | 153 | 41 | 4 | 1 | 153 | 1 | 142 | 1.03e-53 | 167 |
| Msa0186280 | AT1G20693.3 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.52e-47 | 151 |
| Msa0186280 | AT1G20693.1 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.57e-47 | 151 |
| Msa0186280 | AT1G20696.1 | 63.504 | 137 | 38 | 3 | 1 | 137 | 1 | 125 | 8.50e-46 | 146 |
| Msa0186280 | AT2G17560.3 | 54.483 | 145 | 54 | 4 | 1 | 144 | 1 | 134 | 2.12e-41 | 135 |
| Msa0186280 | AT2G17560.2 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 5.14e-41 | 134 |
| Msa0186280 | AT2G17560.1 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 5.14e-41 | 134 |
| Msa0186280 | AT1G20696.5 | 60.800 | 125 | 39 | 2 | 1 | 125 | 1 | 115 | 8.88e-41 | 134 |
| Msa0186280 | AT1G20696.2 | 63.559 | 118 | 33 | 2 | 1 | 118 | 1 | 108 | 1.11e-40 | 134 |
| Msa0186280 | AT3G51880.2 | 65.517 | 116 | 33 | 2 | 26 | 141 | 36 | 144 | 1.55e-39 | 132 |
| Msa0186280 | AT3G51880.5 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.92e-39 | 132 |
| Msa0186280 | AT3G51880.1 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.92e-39 | 132 |
| Msa0186280 | AT3G51880.3 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.92e-39 | 132 |
| Msa0186280 | AT3G51880.4 | 69.388 | 98 | 25 | 1 | 40 | 137 | 48 | 140 | 2.50e-37 | 125 |
| Msa0186280 | AT1G20696.3 | 66.327 | 98 | 29 | 2 | 53 | 150 | 1 | 94 | 1.62e-33 | 114 |
| Msa0186280 | AT4G35570.1 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.19e-32 | 112 |
| Msa0186280 | AT4G35570.2 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.19e-32 | 112 |
| Msa0186280 | AT1G20696.4 | 64.706 | 85 | 28 | 1 | 53 | 137 | 1 | 83 | 1.86e-28 | 101 |
| Msa0186280 | AT2G34450.4 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.69e-19 | 79.3 |
| Msa0186280 | AT2G34450.3 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.69e-19 | 79.3 |
| Msa0186280 | AT2G34450.1 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.69e-19 | 79.3 |
| Msa0186280 | AT2G34450.2 | 37.000 | 100 | 47 | 2 | 45 | 143 | 63 | 147 | 6.26e-18 | 75.9 |
| Msa0186280 | AT5G23420.1 | 46.739 | 92 | 41 | 2 | 26 | 110 | 89 | 179 | 1.35e-15 | 71.6 |
| Msa0186280 | AT4G23800.1 | 45.000 | 80 | 39 | 2 | 41 | 118 | 375 | 451 | 1.03e-11 | 62.0 |
| Msa0186280 | AT4G23800.2 | 45.000 | 80 | 39 | 2 | 41 | 118 | 369 | 445 | 1.07e-11 | 62.0 |
Find 85 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGTCTCTTAGGCTTGTT+AGG | 0.179440 | 2_1:+967845 | None:intergenic |
| ACTAAAATAGTTGGATTTAA+AGG | 0.181207 | 2_1:+966666 | None:intergenic |
| GATAAACATGTCTTACTTCT+AGG | 0.186530 | 2_1:-966771 | Msa0186280:three_prime_UTR |
| TTTCTTGTTATATGCCTTCA+TGG | 0.203700 | 2_1:+967164 | None:intergenic |
| TTACTTAGCATCGGCTTTCT+TGG | 0.250421 | 2_1:+968133 | None:intergenic |
| CTTGGATTCACCCTTGGACT+TGG | 0.277403 | 2_1:+968151 | None:intergenic |
| CAATCCAATGGTAGGGATTT+AGG | 0.280090 | 2_1:+968440 | None:intergenic |
| AAAGCACTTGGAGGTCTCTT+AGG | 0.309499 | 2_1:+967836 | None:intergenic |
| TTAGGCTTGTTAGGGTCCTT+TGG | 0.339552 | 2_1:+967854 | None:intergenic |
| TTTGGTTCCTTTCCCTTGGC+TGG | 0.339914 | 2_1:+967872 | None:intergenic |
| GCAGACACAGCTTTGTTGTC+AGG | 0.342321 | 2_1:+967458 | None:intergenic |
| GTAGATATTAAGCCCGTAAA+AGG | 0.346077 | 2_1:+968384 | None:intergenic |
| GTCCTTTGGTTCCTTTCCCT+TGG | 0.359297 | 2_1:+967868 | None:intergenic |
| GGATTTAAAGGTACAGATAA+AGG | 0.361741 | 2_1:+966678 | None:intergenic |
| GGCTGGTTTCCTTCCGCCCT+TGG | 0.371407 | 2_1:+967889 | None:intergenic |
| GCTGTTGAGGAAGAAGAATC+TGG | 0.372128 | 2_1:-967043 | Msa0186280:CDS |
| TTGCAGGTGGGCAAAGCTGC+TGG | 0.380613 | 2_1:-967359 | Msa0186280:intron |
| TGGGGTTGGAAACTAGGGTT+TGG | 0.387960 | 2_1:+968289 | None:intergenic |
| GGCTTTCTTGGATTCACCCT+TGG | 0.397041 | 2_1:+968145 | None:intergenic |
| GGGGTTGGAAACTAGGGTTT+GGG | 0.405858 | 2_1:+968290 | None:intergenic |
| GTGGAATGGGGTTGGAAACT+AGG | 0.407115 | 2_1:+968283 | None:intergenic |
| CACCTCTTAACTAAAATAGT+TGG | 0.422641 | 2_1:+966657 | None:intergenic |
| AACGTACCGAACGGTGGAAT+GGG | 0.424680 | 2_1:+968270 | None:intergenic |
| TTTCCTTCCGCCCTTGGTAG+TGG | 0.445999 | 2_1:+967895 | None:intergenic |
| TCCAACCCCATTCCACCGTT+CGG | 0.447103 | 2_1:-968276 | Msa0186280:intron |
| GCAAAGCTGCTGGAGCAAAA+TGG | 0.450601 | 2_1:-967349 | Msa0186280:CDS |
| GAAGGCATATAACAAGAAAC+AGG | 0.452913 | 2_1:-967160 | Msa0186280:intron |
| GGGTTGGAAACTAGGGTTTG+GGG | 0.453982 | 2_1:+968291 | None:intergenic |
| GAGGTCTCTTAGGCTTGTTA+GGG | 0.458151 | 2_1:+967846 | None:intergenic |
| TCTTCTTCCTCAACAGCAGC+TGG | 0.462822 | 2_1:+967049 | None:intergenic |
| GGCGGCGCCCTTCTTATTCA+CGG | 0.463220 | 2_1:+967916 | None:intergenic |
| ATGAAAATCAATCCAATGGT+AGG | 0.463826 | 2_1:+968432 | None:intergenic |
| CAGACACAGCTTTGTTGTCA+GGG | 0.494732 | 2_1:+967459 | None:intergenic |
| TGGAATGGGGTTGGAAACTA+GGG | 0.504893 | 2_1:+968284 | None:intergenic |
| CCCGCCTAAATCCCTACCAT+TGG | 0.507483 | 2_1:-968444 | Msa0186280:five_prime_UTR |
| ATGCAGCAAAAGCAGAGAAA+AGG | 0.511362 | 2_1:-967206 | Msa0186280:CDS |
| AAACGATGATGCGGCAGGAT+AGG | 0.515254 | 2_1:+966556 | None:intergenic |
| GGTTGGAAACTAGGGTTTGG+GGG | 0.520276 | 2_1:+968292 | None:intergenic |
| GATGATGATAACATTTATGT+AGG | 0.521769 | 2_1:-966842 | Msa0186280:three_prime_UTR |
| TGAAGGTCCAGCTGCTGTTG+AGG | 0.526952 | 2_1:-967056 | Msa0186280:CDS |
| GAAGGGCGCCGCCACTACCA+AGG | 0.539172 | 2_1:-967906 | Msa0186280:CDS |
| AAACGTACCGAACGGTGGAA+TGG | 0.540893 | 2_1:+968269 | None:intergenic |
| GGGCGGAAGGAAACCAGCCA+AGG | 0.544457 | 2_1:-967885 | Msa0186280:CDS |
| TAGGCTTGCCGTGAATAAGA+AGG | 0.545546 | 2_1:-967924 | Msa0186280:CDS |
| TATGCAAACGATGATGCGGC+AGG | 0.549477 | 2_1:+966551 | None:intergenic |
| AAGGAAACCAGCCAAGGGAA+AGG | 0.549929 | 2_1:-967879 | Msa0186280:CDS |
| ACCGAACGGTGGAATGGGGT+TGG | 0.550575 | 2_1:+968275 | None:intergenic |
| TGTGATTGTTGTCAGGCTGA+AGG | 0.555256 | 2_1:-967073 | Msa0186280:intron |
| GGATTGAACTTACTTAGCAT+CGG | 0.556269 | 2_1:+968124 | None:intergenic |
| AAAACGAAGAAAGCACTTGG+AGG | 0.558317 | 2_1:+967827 | None:intergenic |
| AGCCAAGGGAAAGGAACCAA+AGG | 0.561691 | 2_1:-967870 | Msa0186280:CDS |
| GAGGATGACGAATAGAAACT+TGG | 0.567255 | 2_1:-966864 | Msa0186280:exon |
| CTGTTGAGGAAGAAGAATCT+GGG | 0.568023 | 2_1:-967042 | Msa0186280:CDS |
| AAGGGCGCCGCCACTACCAA+GGG | 0.571773 | 2_1:-967905 | Msa0186280:CDS |
| CCGCCACTACCAAGGGCGGA+AGG | 0.572782 | 2_1:-967898 | Msa0186280:CDS |
| GAAAAGACAACATTTACCAA+GGG | 0.573601 | 2_1:+966734 | None:intergenic |
| TGAAAATCAATCCAATGGTA+GGG | 0.574474 | 2_1:+968433 | None:intergenic |
| TGAAATGAAAATCAATCCAA+TGG | 0.576914 | 2_1:+968428 | None:intergenic |
| ACGAGAGACACACTAGGGTA+AGG | 0.580632 | 2_1:+968350 | None:intergenic |
| TGAAAAGACAACATTTACCA+AGG | 0.587312 | 2_1:+966733 | None:intergenic |
| ATGAAAACGAAGAAAGCACT+TGG | 0.589018 | 2_1:+967824 | None:intergenic |
| CATGAAAGGAGCCAAGTCCA+AGG | 0.590256 | 2_1:-968162 | Msa0186280:CDS |
| AAACAGAAGGAAACAAACAT+AGG | 0.591594 | 2_1:+966525 | None:intergenic |
| TTGTATACGAGAGACACACT+AGG | 0.596814 | 2_1:+968344 | None:intergenic |
| CCTTCCGCCCTTGGTAGTGG+CGG | 0.599374 | 2_1:+967898 | None:intergenic |
| TGAAGTGCATGATGAGAATG+AGG | 0.606285 | 2_1:-967008 | Msa0186280:CDS |
| GGCGCCGCCACTACCAAGGG+CGG | 0.610298 | 2_1:-967902 | Msa0186280:CDS |
| AGGCTTGCCGTGAATAAGAA+GGG | 0.612713 | 2_1:-967923 | Msa0186280:CDS |
| CTAGGGTAAGGATCAAATGC+GGG | 0.618398 | 2_1:+968362 | None:intergenic |
| AGAATATGAGAAAACCATGA+AGG | 0.619628 | 2_1:-967178 | Msa0186280:CDS |
| TGAGAATGAGGATGATGATG+AGG | 0.623282 | 2_1:-966996 | Msa0186280:CDS |
| TGTATACGAGAGACACACTA+GGG | 0.625797 | 2_1:+968345 | None:intergenic |
| AATGAGGATGATGATGAGGA+TGG | 0.627725 | 2_1:-966992 | Msa0186280:CDS |
| ACGTACCGAACGGTGGAATG+GGG | 0.629092 | 2_1:+968271 | None:intergenic |
| AGAGGAAACGTACCGAACGG+TGG | 0.632057 | 2_1:+968264 | None:intergenic |
| ATGAAAGGAGCCAAGTCCAA+GGG | 0.636209 | 2_1:-968161 | Msa0186280:CDS |
| GGCGGAAGGAAACCAGCCAA+GGG | 0.638094 | 2_1:-967884 | Msa0186280:CDS |
| AGCAAAAGCAGAGAAAAGGA+AGG | 0.642820 | 2_1:-967202 | Msa0186280:CDS |
| CCAATGGTAGGGATTTAGGC+GGG | 0.648488 | 2_1:+968444 | None:intergenic |
| GATATATGCAAACGATGATG+CGG | 0.653333 | 2_1:+966547 | None:intergenic |
| ACGTGAATAGCTAAAATACG+AGG | 0.663789 | 2_1:-966708 | Msa0186280:three_prime_UTR |
| TCCAATGGTAGGGATTTAGG+CGG | 0.670919 | 2_1:+968443 | None:intergenic |
| CGTGAATAGCTAAAATACGA+GGG | 0.671366 | 2_1:-966707 | Msa0186280:three_prime_UTR |
| ACTAGGGTAAGGATCAAATG+CGG | 0.686246 | 2_1:+968361 | None:intergenic |
| TGATGAGGATGGCAGTGAAG+AGG | 0.697028 | 2_1:-966981 | Msa0186280:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATTCAATTATAATAAT+TGG | + | chr2_1:967301-967320 | None:intergenic | 10.0% |
| !! | ATGTATTCAATTATAATAAT+TGG | + | chr2_1:967301-967320 | None:intergenic | 10.0% |
| !!! | TGAATTTCAATTTCCTTTTA+CGG | - | chr2_1:966591-966610 | Msa0186280:three_prime_UTR | 20.0% |
| !! | AAGAGGAAATTATGAAAAAA+CGG | + | chr2_1:966888-966907 | None:intergenic | 20.0% |
| !!! | ATTGATATTGTTGATTTTGA+TGG | - | chr2_1:967041-967060 | Msa0186280:CDS | 20.0% |
| !!! | TTTTTATTCTGAAATTTGTG+TGG | - | chr2_1:967464-967483 | Msa0186280:CDS | 20.0% |
| !! | GTATGTACTGTTATATTTAT+TGG | - | chr2_1:967680-967699 | Msa0186280:intron | 20.0% |
| !! | ACTAAAATAGTTGGATTTAA+AGG | + | chr2_1:968325-968344 | None:intergenic | 20.0% |
| !!! | TGAATTTCAATTTCCTTTTA+CGG | - | chr2_1:966591-966610 | Msa0186280:three_prime_UTR | 20.0% |
| !! | AAGAGGAAATTATGAAAAAA+CGG | + | chr2_1:966888-966907 | None:intergenic | 20.0% |
| !!! | ATTGATATTGTTGATTTTGA+TGG | - | chr2_1:967041-967060 | Msa0186280:CDS | 20.0% |
| !!! | TTTTTATTCTGAAATTTGTG+TGG | - | chr2_1:967464-967483 | Msa0186280:CDS | 20.0% |
| !! | GTATGTACTGTTATATTTAT+TGG | - | chr2_1:967680-967699 | Msa0186280:intron | 20.0% |
| !! | ACTAAAATAGTTGGATTTAA+AGG | + | chr2_1:968325-968344 | None:intergenic | 20.0% |
| ! | TGAAATGAAAATCAATCCAA+TGG | + | chr2_1:966563-966582 | None:intergenic | 25.0% |
| !! | GAATTTCAATTTCCTTTTAC+GGG | - | chr2_1:966592-966611 | Msa0186280:three_prime_UTR | 25.0% |
| ! | GCAAAAAATCGAGTAAATTA+GGG | - | chr2_1:966934-966953 | Msa0186280:intron | 25.0% |
| !! | AACTAGCATAATTTCTCTTT+TGG | - | chr2_1:966995-967014 | Msa0186280:CDS | 25.0% |
| !!! | ATATTGTTGATTTTGATGGT+AGG | - | chr2_1:967045-967064 | Msa0186280:CDS | 25.0% |
| ! | AAATTTGTGTGGTCTTTATA+GGG | - | chr2_1:967475-967494 | Msa0186280:CDS | 25.0% |
| ! | TGTTGTAAGTAAATGCAAAT+TGG | - | chr2_1:967867-967886 | Msa0186280:CDS | 25.0% |
| ! | GTTGTAAGTAAATGCAAATT+GGG | - | chr2_1:967868-967887 | Msa0186280:CDS | 25.0% |
| ! | ATTTATTTGTGATTGTTGTC+AGG | - | chr2_1:967908-967927 | Msa0186280:CDS | 25.0% |
| ! | TTTGTTGAATTTCACTTTGT+AGG | - | chr2_1:968050-968069 | Msa0186280:intron | 25.0% |
| ! | GATGATGATAACATTTATGT+AGG | - | chr2_1:968146-968165 | Msa0186280:CDS | 25.0% |
| !!! | ATCCAACTATTTTAGTTAAG+AGG | - | chr2_1:968329-968348 | Msa0186280:five_prime_UTR | 25.0% |
| ! | TGAAATGAAAATCAATCCAA+TGG | + | chr2_1:966563-966582 | None:intergenic | 25.0% |
| !! | GAATTTCAATTTCCTTTTAC+GGG | - | chr2_1:966592-966611 | Msa0186280:three_prime_UTR | 25.0% |
| ! | GCAAAAAATCGAGTAAATTA+GGG | - | chr2_1:966934-966953 | Msa0186280:intron | 25.0% |
| !! | AACTAGCATAATTTCTCTTT+TGG | - | chr2_1:966995-967014 | Msa0186280:CDS | 25.0% |
| !!! | ATATTGTTGATTTTGATGGT+AGG | - | chr2_1:967045-967064 | Msa0186280:CDS | 25.0% |
| ! | AAATTTGTGTGGTCTTTATA+GGG | - | chr2_1:967475-967494 | Msa0186280:CDS | 25.0% |
| ! | TGTTGTAAGTAAATGCAAAT+TGG | - | chr2_1:967867-967886 | Msa0186280:CDS | 25.0% |
| ! | GTTGTAAGTAAATGCAAATT+GGG | - | chr2_1:967868-967887 | Msa0186280:CDS | 25.0% |
| ! | ATTTATTTGTGATTGTTGTC+AGG | - | chr2_1:967908-967927 | Msa0186280:CDS | 25.0% |
| ! | TTTGTTGAATTTCACTTTGT+AGG | - | chr2_1:968050-968069 | Msa0186280:intron | 25.0% |
| ! | GATGATGATAACATTTATGT+AGG | - | chr2_1:968146-968165 | Msa0186280:CDS | 25.0% |
| !!! | ATCCAACTATTTTAGTTAAG+AGG | - | chr2_1:968329-968348 | Msa0186280:five_prime_UTR | 25.0% |
| TGAAAATCAATCCAATGGTA+GGG | + | chr2_1:966558-966577 | None:intergenic | 30.0% | |
| ATGAAAATCAATCCAATGGT+AGG | + | chr2_1:966559-966578 | None:intergenic | 30.0% | |
| AGCGAATAAAACGATTTAAG+AGG | + | chr2_1:966905-966924 | None:intergenic | 30.0% | |
| GGCAAAAAATCGAGTAAATT+AGG | - | chr2_1:966933-966952 | Msa0186280:intron | 30.0% | |
| ATAAAAATGTCAAAGTCCCA+CGG | + | chr2_1:967428-967447 | None:intergenic | 30.0% | |
| GAAATTTGTGTGGTCTTTAT+AGG | - | chr2_1:967474-967493 | Msa0186280:CDS | 30.0% | |
| TGCTTATTACATGCGATATA+AGG | + | chr2_1:967583-967602 | None:intergenic | 30.0% | |
| ! | CATCTGTATATGAATTTTGC+AGG | - | chr2_1:967613-967632 | Msa0186280:intron | 30.0% |
| ! | TGTATATGAATTTTGCAGGT+GGG | - | chr2_1:967617-967636 | Msa0186280:intron | 30.0% |
| AGAATATGAGAAAACCATGA+AGG | - | chr2_1:967810-967829 | Msa0186280:intron | 30.0% | |
| ! | TTTCTTGTTATATGCCTTCA+TGG | + | chr2_1:967827-967846 | None:intergenic | 30.0% |
| TAAATGCAAATTGGGTAACT+AGG | - | chr2_1:967876-967895 | Msa0186280:CDS | 30.0% | |
| GATAAACATGTCTTACTTCT+AGG | - | chr2_1:968217-968236 | Msa0186280:intron | 30.0% | |
| GAAAAGACAACATTTACCAA+GGG | + | chr2_1:968257-968276 | None:intergenic | 30.0% | |
| TGAAAAGACAACATTTACCA+AGG | + | chr2_1:968258-968277 | None:intergenic | 30.0% | |
| ! | GGATTTAAAGGTACAGATAA+AGG | + | chr2_1:968313-968332 | None:intergenic | 30.0% |
| CACCTCTTAACTAAAATAGT+TGG | + | chr2_1:968334-968353 | None:intergenic | 30.0% | |
| TGAAAATCAATCCAATGGTA+GGG | + | chr2_1:966558-966577 | None:intergenic | 30.0% | |
| ATGAAAATCAATCCAATGGT+AGG | + | chr2_1:966559-966578 | None:intergenic | 30.0% | |
| AGCGAATAAAACGATTTAAG+AGG | + | chr2_1:966905-966924 | None:intergenic | 30.0% | |
| GGCAAAAAATCGAGTAAATT+AGG | - | chr2_1:966933-966952 | Msa0186280:intron | 30.0% | |
| ATAAAAATGTCAAAGTCCCA+CGG | + | chr2_1:967428-967447 | None:intergenic | 30.0% | |
| GAAATTTGTGTGGTCTTTAT+AGG | - | chr2_1:967474-967493 | Msa0186280:CDS | 30.0% | |
| TGCTTATTACATGCGATATA+AGG | + | chr2_1:967583-967602 | None:intergenic | 30.0% | |
| ! | CATCTGTATATGAATTTTGC+AGG | - | chr2_1:967613-967632 | Msa0186280:intron | 30.0% |
| ! | TGTATATGAATTTTGCAGGT+GGG | - | chr2_1:967617-967636 | Msa0186280:intron | 30.0% |
| AGAATATGAGAAAACCATGA+AGG | - | chr2_1:967810-967829 | Msa0186280:intron | 30.0% | |
| ! | TTTCTTGTTATATGCCTTCA+TGG | + | chr2_1:967827-967846 | None:intergenic | 30.0% |
| TAAATGCAAATTGGGTAACT+AGG | - | chr2_1:967876-967895 | Msa0186280:CDS | 30.0% | |
| GATAAACATGTCTTACTTCT+AGG | - | chr2_1:968217-968236 | Msa0186280:intron | 30.0% | |
| GAAAAGACAACATTTACCAA+GGG | + | chr2_1:968257-968276 | None:intergenic | 30.0% | |
| TGAAAAGACAACATTTACCA+AGG | + | chr2_1:968258-968277 | None:intergenic | 30.0% | |
| ! | GGATTTAAAGGTACAGATAA+AGG | + | chr2_1:968313-968332 | None:intergenic | 30.0% |
| CACCTCTTAACTAAAATAGT+TGG | + | chr2_1:968334-968353 | None:intergenic | 30.0% | |
| GTAGATATTAAGCCCGTAAA+AGG | + | chr2_1:966607-966626 | None:intergenic | 35.0% | |
| GAAAATTGAGCGAAATTGAG+AGG | + | chr2_1:966745-966764 | None:intergenic | 35.0% | |
| ! | ACTGCAGTTTTCATCATGAA+AGG | - | chr2_1:966812-966831 | Msa0186280:three_prime_UTR | 35.0% |
| GGATTGAACTTACTTAGCAT+CGG | + | chr2_1:966867-966886 | None:intergenic | 35.0% | |
| !! | CGTTTTATTCGCTTTCGATT+TGG | - | chr2_1:966912-966931 | Msa0186280:intron | 35.0% |
| !! | ATGAAAACGAAGAAAGCACT+TGG | + | chr2_1:967167-967186 | None:intergenic | 35.0% |
| ! | CAGTCATAACTGTTTTCACA+CGG | + | chr2_1:967391-967410 | None:intergenic | 35.0% |
| ! | GTCTTTATAGGGAGGATTTT+AGG | - | chr2_1:967486-967505 | Msa0186280:CDS | 35.0% |
| !! | TTTTAGGAAGCAGTTCAAGA+AGG | - | chr2_1:967502-967521 | Msa0186280:intron | 35.0% |
| !!! | AGTATCCGTTGTTGTTTTAC+TGG | - | chr2_1:967557-967576 | Msa0186280:intron | 35.0% |
| TAAGGCCAGTAAAACAACAA+CGG | + | chr2_1:967565-967584 | None:intergenic | 35.0% | |
| ! | CTGTATATGAATTTTGCAGG+TGG | - | chr2_1:967616-967635 | Msa0186280:intron | 35.0% |
| CGTTCAATCACAGCATATAA+TGG | + | chr2_1:967728-967747 | None:intergenic | 35.0% | |
| ATATGCTGTGATTGAACGTT+TGG | - | chr2_1:967730-967749 | Msa0186280:intron | 35.0% | |
| GTTTGGTCTCTGGATTTATT+AGG | - | chr2_1:967747-967766 | Msa0186280:intron | 35.0% | |
| ! | GAAGGCATATAACAAGAAAC+AGG | - | chr2_1:967828-967847 | Msa0186280:CDS | 35.0% |
| GCATATAACAAGAAACAGGT+CGG | - | chr2_1:967832-967851 | Msa0186280:CDS | 35.0% | |
| TTGTTCCTTATGTTTCATGC+AGG | - | chr2_1:968099-968118 | Msa0186280:intron | 35.0% | |
| ACGTGAATAGCTAAAATACG+AGG | - | chr2_1:968280-968299 | Msa0186280:five_prime_UTR | 35.0% | |
| CGTGAATAGCTAAAATACGA+GGG | - | chr2_1:968281-968300 | Msa0186280:five_prime_UTR | 35.0% | |
| !!! | AGAGCTTTTAGTTTCTCTTG+TGG | - | chr2_1:968366-968385 | Msa0186280:five_prime_UTR | 35.0% |
| GATATATGCAAACGATGATG+CGG | + | chr2_1:968444-968463 | None:intergenic | 35.0% | |
| GTAGATATTAAGCCCGTAAA+AGG | + | chr2_1:966607-966626 | None:intergenic | 35.0% | |
| GAAAATTGAGCGAAATTGAG+AGG | + | chr2_1:966745-966764 | None:intergenic | 35.0% | |
| ! | ACTGCAGTTTTCATCATGAA+AGG | - | chr2_1:966812-966831 | Msa0186280:three_prime_UTR | 35.0% |
| GGATTGAACTTACTTAGCAT+CGG | + | chr2_1:966867-966886 | None:intergenic | 35.0% | |
| !! | CGTTTTATTCGCTTTCGATT+TGG | - | chr2_1:966912-966931 | Msa0186280:intron | 35.0% |
| !! | ATGAAAACGAAGAAAGCACT+TGG | + | chr2_1:967167-967186 | None:intergenic | 35.0% |
| ! | CAGTCATAACTGTTTTCACA+CGG | + | chr2_1:967391-967410 | None:intergenic | 35.0% |
| ! | GTCTTTATAGGGAGGATTTT+AGG | - | chr2_1:967486-967505 | Msa0186280:CDS | 35.0% |
| !! | TTTTAGGAAGCAGTTCAAGA+AGG | - | chr2_1:967502-967521 | Msa0186280:intron | 35.0% |
| !!! | AGTATCCGTTGTTGTTTTAC+TGG | - | chr2_1:967557-967576 | Msa0186280:intron | 35.0% |
| TAAGGCCAGTAAAACAACAA+CGG | + | chr2_1:967565-967584 | None:intergenic | 35.0% | |
| ! | CTGTATATGAATTTTGCAGG+TGG | - | chr2_1:967616-967635 | Msa0186280:intron | 35.0% |
| CGTTCAATCACAGCATATAA+TGG | + | chr2_1:967728-967747 | None:intergenic | 35.0% | |
| ATATGCTGTGATTGAACGTT+TGG | - | chr2_1:967730-967749 | Msa0186280:intron | 35.0% | |
| GTTTGGTCTCTGGATTTATT+AGG | - | chr2_1:967747-967766 | Msa0186280:intron | 35.0% | |
| ! | GAAGGCATATAACAAGAAAC+AGG | - | chr2_1:967828-967847 | Msa0186280:CDS | 35.0% |
| GCATATAACAAGAAACAGGT+CGG | - | chr2_1:967832-967851 | Msa0186280:CDS | 35.0% | |
| TTGTTCCTTATGTTTCATGC+AGG | - | chr2_1:968099-968118 | Msa0186280:intron | 35.0% | |
| ACGTGAATAGCTAAAATACG+AGG | - | chr2_1:968280-968299 | Msa0186280:five_prime_UTR | 35.0% | |
| CGTGAATAGCTAAAATACGA+GGG | - | chr2_1:968281-968300 | Msa0186280:five_prime_UTR | 35.0% | |
| !!! | AGAGCTTTTAGTTTCTCTTG+TGG | - | chr2_1:968366-968385 | Msa0186280:five_prime_UTR | 35.0% |
| GATATATGCAAACGATGATG+CGG | + | chr2_1:968444-968463 | None:intergenic | 35.0% | |
| CAATCCAATGGTAGGGATTT+AGG | + | chr2_1:966551-966570 | None:intergenic | 40.0% | |
| ACTAGGGTAAGGATCAAATG+CGG | + | chr2_1:966630-966649 | None:intergenic | 40.0% | |
| TGTATACGAGAGACACACTA+GGG | + | chr2_1:966646-966665 | None:intergenic | 40.0% | |
| TTGTATACGAGAGACACACT+AGG | + | chr2_1:966647-966666 | None:intergenic | 40.0% | |
| !!! | GCGTTAGTTTTTACAGCGAA+AGG | + | chr2_1:966783-966802 | None:intergenic | 40.0% |
| !! | TTACTTAGCATCGGCTTTCT+TGG | + | chr2_1:966858-966877 | None:intergenic | 40.0% |
| ! | CGATTTTCAGATCTCAGATC+TGG | + | chr2_1:966971-966990 | None:intergenic | 40.0% |
| !! | AAAACGAAGAAAGCACTTGG+AGG | + | chr2_1:967164-967183 | None:intergenic | 40.0% |
| ! | GTTTTCACACGGTATAAGAC+AGG | + | chr2_1:967380-967399 | None:intergenic | 40.0% |
| TTTGTGTGGTCTTTATAGGG+AGG | - | chr2_1:967478-967497 | Msa0186280:CDS | 40.0% | |
| !! | TTCTCTGCTTTTGCTGCATA+TGG | + | chr2_1:967781-967800 | None:intergenic | 40.0% |
| ATGCAGCAAAAGCAGAGAAA+AGG | - | chr2_1:967782-967801 | Msa0186280:intron | 40.0% | |
| AGCAAAAGCAGAGAAAAGGA+AGG | - | chr2_1:967786-967805 | Msa0186280:intron | 40.0% | |
| CTGTTGAGGAAGAAGAATCT+GGG | - | chr2_1:967946-967965 | Msa0186280:intron | 40.0% | |
| TGAAGTGCATGATGAGAATG+AGG | - | chr2_1:967980-967999 | Msa0186280:intron | 40.0% | |
| ! | TGAGAATGAGGATGATGATG+AGG | - | chr2_1:967992-968011 | Msa0186280:intron | 40.0% |
| ! | AATGAGGATGATGATGAGGA+TGG | - | chr2_1:967996-968015 | Msa0186280:intron | 40.0% |
| TTCCTTATGTTTCATGCAGG+AGG | - | chr2_1:968102-968121 | Msa0186280:intron | 40.0% | |
| GAGGATGACGAATAGAAACT+TGG | - | chr2_1:968124-968143 | Msa0186280:intron | 40.0% | |
| CAATCCAATGGTAGGGATTT+AGG | + | chr2_1:966551-966570 | None:intergenic | 40.0% | |
| ACTAGGGTAAGGATCAAATG+CGG | + | chr2_1:966630-966649 | None:intergenic | 40.0% | |
| TGTATACGAGAGACACACTA+GGG | + | chr2_1:966646-966665 | None:intergenic | 40.0% | |
| TTGTATACGAGAGACACACT+AGG | + | chr2_1:966647-966666 | None:intergenic | 40.0% | |
| !!! | GCGTTAGTTTTTACAGCGAA+AGG | + | chr2_1:966783-966802 | None:intergenic | 40.0% |
| !! | TTACTTAGCATCGGCTTTCT+TGG | + | chr2_1:966858-966877 | None:intergenic | 40.0% |
| ! | CGATTTTCAGATCTCAGATC+TGG | + | chr2_1:966971-966990 | None:intergenic | 40.0% |
| !! | AAAACGAAGAAAGCACTTGG+AGG | + | chr2_1:967164-967183 | None:intergenic | 40.0% |
| ! | GTTTTCACACGGTATAAGAC+AGG | + | chr2_1:967380-967399 | None:intergenic | 40.0% |
| TTTGTGTGGTCTTTATAGGG+AGG | - | chr2_1:967478-967497 | Msa0186280:CDS | 40.0% | |
| !! | TTCTCTGCTTTTGCTGCATA+TGG | + | chr2_1:967781-967800 | None:intergenic | 40.0% |
| ATGCAGCAAAAGCAGAGAAA+AGG | - | chr2_1:967782-967801 | Msa0186280:intron | 40.0% | |
| AGCAAAAGCAGAGAAAAGGA+AGG | - | chr2_1:967786-967805 | Msa0186280:intron | 40.0% | |
| CTGTTGAGGAAGAAGAATCT+GGG | - | chr2_1:967946-967965 | Msa0186280:intron | 40.0% | |
| TGAAGTGCATGATGAGAATG+AGG | - | chr2_1:967980-967999 | Msa0186280:intron | 40.0% | |
| ! | TGAGAATGAGGATGATGATG+AGG | - | chr2_1:967992-968011 | Msa0186280:intron | 40.0% |
| ! | AATGAGGATGATGATGAGGA+TGG | - | chr2_1:967996-968015 | Msa0186280:intron | 40.0% |
| TTCCTTATGTTTCATGCAGG+AGG | - | chr2_1:968102-968121 | Msa0186280:intron | 40.0% | |
| GAGGATGACGAATAGAAACT+TGG | - | chr2_1:968124-968143 | Msa0186280:intron | 40.0% | |
| TCCAATGGTAGGGATTTAGG+CGG | + | chr2_1:966548-966567 | None:intergenic | 45.0% | |
| CTAGGGTAAGGATCAAATGC+GGG | + | chr2_1:966629-966648 | None:intergenic | 45.0% | |
| TGGAATGGGGTTGGAAACTA+GGG | + | chr2_1:966707-966726 | None:intergenic | 45.0% | |
| TTGAGAGGAAACGTACCGAA+CGG | + | chr2_1:966730-966749 | None:intergenic | 45.0% | |
| ATGAAAGGAGCCAAGTCCAA+GGG | - | chr2_1:966827-966846 | Msa0186280:three_prime_UTR | 45.0% | |
| TAGGCTTGCCGTGAATAAGA+AGG | - | chr2_1:967064-967083 | Msa0186280:intron | 45.0% | |
| AGGCTTGCCGTGAATAAGAA+GGG | - | chr2_1:967065-967084 | Msa0186280:intron | 45.0% | |
| !! | TTAGGCTTGTTAGGGTCCTT+TGG | + | chr2_1:967137-967156 | None:intergenic | 45.0% |
| !! | GAGGTCTCTTAGGCTTGTTA+GGG | + | chr2_1:967145-967164 | None:intergenic | 45.0% |
| ! | AAAGCACTTGGAGGTCTCTT+AGG | + | chr2_1:967155-967174 | None:intergenic | 45.0% |
| TGCTGAGTTATGATGACCGT+GGG | - | chr2_1:967409-967428 | Msa0186280:intron | 45.0% | |
| !! | CAGACACAGCTTTGTTGTCA+GGG | + | chr2_1:967532-967551 | None:intergenic | 45.0% |
| GTGATTGAACGTTTGGTCTC+TGG | - | chr2_1:967737-967756 | Msa0186280:intron | 45.0% | |
| TGTGATTGTTGTCAGGCTGA+AGG | - | chr2_1:967915-967934 | Msa0186280:CDS | 45.0% | |
| GCTGTTGAGGAAGAAGAATC+TGG | - | chr2_1:967945-967964 | Msa0186280:intron | 45.0% | |
| CTCCTCCTGCATGAAACATA+AGG | + | chr2_1:968107-968126 | None:intergenic | 45.0% | |
| CTTATGTTTCATGCAGGAGG+AGG | - | chr2_1:968105-968124 | Msa0186280:intron | 45.0% | |
| ! | GGAATATTTTGCTGCTCCCT+TGG | - | chr2_1:968238-968257 | Msa0186280:intron | 45.0% |
| TCCAATGGTAGGGATTTAGG+CGG | + | chr2_1:966548-966567 | None:intergenic | 45.0% | |
| CTAGGGTAAGGATCAAATGC+GGG | + | chr2_1:966629-966648 | None:intergenic | 45.0% | |
| TGGAATGGGGTTGGAAACTA+GGG | + | chr2_1:966707-966726 | None:intergenic | 45.0% | |
| TTGAGAGGAAACGTACCGAA+CGG | + | chr2_1:966730-966749 | None:intergenic | 45.0% | |
| ATGAAAGGAGCCAAGTCCAA+GGG | - | chr2_1:966827-966846 | Msa0186280:three_prime_UTR | 45.0% | |
| TAGGCTTGCCGTGAATAAGA+AGG | - | chr2_1:967064-967083 | Msa0186280:intron | 45.0% | |
| AGGCTTGCCGTGAATAAGAA+GGG | - | chr2_1:967065-967084 | Msa0186280:intron | 45.0% | |
| !! | TTAGGCTTGTTAGGGTCCTT+TGG | + | chr2_1:967137-967156 | None:intergenic | 45.0% |
| !! | GAGGTCTCTTAGGCTTGTTA+GGG | + | chr2_1:967145-967164 | None:intergenic | 45.0% |
| ! | AAAGCACTTGGAGGTCTCTT+AGG | + | chr2_1:967155-967174 | None:intergenic | 45.0% |
| TGCTGAGTTATGATGACCGT+GGG | - | chr2_1:967409-967428 | Msa0186280:intron | 45.0% | |
| !! | CAGACACAGCTTTGTTGTCA+GGG | + | chr2_1:967532-967551 | None:intergenic | 45.0% |
| GTGATTGAACGTTTGGTCTC+TGG | - | chr2_1:967737-967756 | Msa0186280:intron | 45.0% | |
| TGTGATTGTTGTCAGGCTGA+AGG | - | chr2_1:967915-967934 | Msa0186280:CDS | 45.0% | |
| GCTGTTGAGGAAGAAGAATC+TGG | - | chr2_1:967945-967964 | Msa0186280:intron | 45.0% | |
| CTCCTCCTGCATGAAACATA+AGG | + | chr2_1:968107-968126 | None:intergenic | 45.0% | |
| CTTATGTTTCATGCAGGAGG+AGG | - | chr2_1:968105-968124 | Msa0186280:intron | 45.0% | |
| ! | GGAATATTTTGCTGCTCCCT+TGG | - | chr2_1:968238-968257 | Msa0186280:intron | 45.0% |
| CCAATGGTAGGGATTTAGGC+GGG | + | chr2_1:966547-966566 | None:intergenic | 50.0% | |
| ACGAGAGACACACTAGGGTA+AGG | + | chr2_1:966641-966660 | None:intergenic | 50.0% | |
| GGTTGGAAACTAGGGTTTGG+GGG | + | chr2_1:966699-966718 | None:intergenic | 50.0% | |
| GGGTTGGAAACTAGGGTTTG+GGG | + | chr2_1:966700-966719 | None:intergenic | 50.0% | |
| GGGGTTGGAAACTAGGGTTT+GGG | + | chr2_1:966701-966720 | None:intergenic | 50.0% | |
| TGGGGTTGGAAACTAGGGTT+TGG | + | chr2_1:966702-966721 | None:intergenic | 50.0% | |
| GTGGAATGGGGTTGGAAACT+AGG | + | chr2_1:966708-966727 | None:intergenic | 50.0% | |
| AACGTACCGAACGGTGGAAT+GGG | + | chr2_1:966721-966740 | None:intergenic | 50.0% | |
| AAACGTACCGAACGGTGGAA+TGG | + | chr2_1:966722-966741 | None:intergenic | 50.0% | |
| CATGAAAGGAGCCAAGTCCA+AGG | - | chr2_1:966826-966845 | Msa0186280:three_prime_UTR | 50.0% | |
| CTTGGATTCACCCTTGGACT+TGG | + | chr2_1:966840-966859 | None:intergenic | 50.0% | |
| GGCTTTCTTGGATTCACCCT+TGG | + | chr2_1:966846-966865 | None:intergenic | 50.0% | |
| AAGGAAACCAGCCAAGGGAA+AGG | - | chr2_1:967109-967128 | Msa0186280:intron | 50.0% | |
| ! | TTTGGTTCCTTTCCCTTGGC+TGG | + | chr2_1:967119-967138 | None:intergenic | 50.0% |
| AGCCAAGGGAAAGGAACCAA+AGG | - | chr2_1:967118-967137 | Msa0186280:intron | 50.0% | |
| ! | GTCCTTTGGTTCCTTTCCCT+TGG | + | chr2_1:967123-967142 | None:intergenic | 50.0% |
| ! | GGAGGTCTCTTAGGCTTGTT+AGG | + | chr2_1:967146-967165 | None:intergenic | 50.0% |
| CTGCTGAGTTATGATGACCG+TGG | - | chr2_1:967408-967427 | Msa0186280:intron | 50.0% | |
| !! | GCAGACACAGCTTTGTTGTC+AGG | + | chr2_1:967533-967552 | None:intergenic | 50.0% |
| GCAAAGCTGCTGGAGCAAAA+TGG | - | chr2_1:967639-967658 | Msa0186280:intron | 50.0% | |
| TCTTCTTCCTCAACAGCAGC+TGG | + | chr2_1:967942-967961 | None:intergenic | 50.0% | |
| TGATGAGGATGGCAGTGAAG+AGG | - | chr2_1:968007-968026 | Msa0186280:intron | 50.0% | |
| AAACGATGATGCGGCAGGAT+AGG | + | chr2_1:968435-968454 | None:intergenic | 50.0% | |
| TATGCAAACGATGATGCGGC+AGG | + | chr2_1:968440-968459 | None:intergenic | 50.0% | |
| CCAATGGTAGGGATTTAGGC+GGG | + | chr2_1:966547-966566 | None:intergenic | 50.0% | |
| ACGAGAGACACACTAGGGTA+AGG | + | chr2_1:966641-966660 | None:intergenic | 50.0% | |
| GGTTGGAAACTAGGGTTTGG+GGG | + | chr2_1:966699-966718 | None:intergenic | 50.0% | |
| GGGTTGGAAACTAGGGTTTG+GGG | + | chr2_1:966700-966719 | None:intergenic | 50.0% | |
| GGGGTTGGAAACTAGGGTTT+GGG | + | chr2_1:966701-966720 | None:intergenic | 50.0% | |
| TGGGGTTGGAAACTAGGGTT+TGG | + | chr2_1:966702-966721 | None:intergenic | 50.0% | |
| GTGGAATGGGGTTGGAAACT+AGG | + | chr2_1:966708-966727 | None:intergenic | 50.0% | |
| AACGTACCGAACGGTGGAAT+GGG | + | chr2_1:966721-966740 | None:intergenic | 50.0% | |
| AAACGTACCGAACGGTGGAA+TGG | + | chr2_1:966722-966741 | None:intergenic | 50.0% | |
| CATGAAAGGAGCCAAGTCCA+AGG | - | chr2_1:966826-966845 | Msa0186280:three_prime_UTR | 50.0% | |
| CTTGGATTCACCCTTGGACT+TGG | + | chr2_1:966840-966859 | None:intergenic | 50.0% | |
| GGCTTTCTTGGATTCACCCT+TGG | + | chr2_1:966846-966865 | None:intergenic | 50.0% | |
| AAGGAAACCAGCCAAGGGAA+AGG | - | chr2_1:967109-967128 | Msa0186280:intron | 50.0% | |
| ! | TTTGGTTCCTTTCCCTTGGC+TGG | + | chr2_1:967119-967138 | None:intergenic | 50.0% |
| AGCCAAGGGAAAGGAACCAA+AGG | - | chr2_1:967118-967137 | Msa0186280:intron | 50.0% | |
| ! | GTCCTTTGGTTCCTTTCCCT+TGG | + | chr2_1:967123-967142 | None:intergenic | 50.0% |
| ! | GGAGGTCTCTTAGGCTTGTT+AGG | + | chr2_1:967146-967165 | None:intergenic | 50.0% |
| CTGCTGAGTTATGATGACCG+TGG | - | chr2_1:967408-967427 | Msa0186280:intron | 50.0% | |
| !! | GCAGACACAGCTTTGTTGTC+AGG | + | chr2_1:967533-967552 | None:intergenic | 50.0% |
| GCAAAGCTGCTGGAGCAAAA+TGG | - | chr2_1:967639-967658 | Msa0186280:intron | 50.0% | |
| TCTTCTTCCTCAACAGCAGC+TGG | + | chr2_1:967942-967961 | None:intergenic | 50.0% | |
| TGATGAGGATGGCAGTGAAG+AGG | - | chr2_1:968007-968026 | Msa0186280:intron | 50.0% | |
| AAACGATGATGCGGCAGGAT+AGG | + | chr2_1:968435-968454 | None:intergenic | 50.0% | |
| TATGCAAACGATGATGCGGC+AGG | + | chr2_1:968440-968459 | None:intergenic | 50.0% | |
| CCCGCCTAAATCCCTACCAT+TGG | - | chr2_1:966544-966563 | Msa0186280:three_prime_UTR | 55.0% | |
| GGGGAGAGAGAGAGAGTTTG+TGG | + | chr2_1:966680-966699 | None:intergenic | 55.0% | |
| TCCAACCCCATTCCACCGTT+CGG | - | chr2_1:966712-966731 | Msa0186280:three_prime_UTR | 55.0% | |
| ACGTACCGAACGGTGGAATG+GGG | + | chr2_1:966720-966739 | None:intergenic | 55.0% | |
| AGAGGAAACGTACCGAACGG+TGG | + | chr2_1:966727-966746 | None:intergenic | 55.0% | |
| TTTCCTTCCGCCCTTGGTAG+TGG | + | chr2_1:967096-967115 | None:intergenic | 55.0% | |
| TGAAGGTCCAGCTGCTGTTG+AGG | - | chr2_1:967932-967951 | Msa0186280:intron | 55.0% | |
| CCCGCCTAAATCCCTACCAT+TGG | - | chr2_1:966544-966563 | Msa0186280:three_prime_UTR | 55.0% | |
| GGGGAGAGAGAGAGAGTTTG+TGG | + | chr2_1:966680-966699 | None:intergenic | 55.0% | |
| TCCAACCCCATTCCACCGTT+CGG | - | chr2_1:966712-966731 | Msa0186280:three_prime_UTR | 55.0% | |
| ACGTACCGAACGGTGGAATG+GGG | + | chr2_1:966720-966739 | None:intergenic | 55.0% | |
| AGAGGAAACGTACCGAACGG+TGG | + | chr2_1:966727-966746 | None:intergenic | 55.0% | |
| TTTCCTTCCGCCCTTGGTAG+TGG | + | chr2_1:967096-967115 | None:intergenic | 55.0% | |
| TGAAGGTCCAGCTGCTGTTG+AGG | - | chr2_1:967932-967951 | Msa0186280:intron | 55.0% | |
| ACCGAACGGTGGAATGGGGT+TGG | + | chr2_1:966716-966735 | None:intergenic | 60.0% | |
| GGCGGCGCCCTTCTTATTCA+CGG | + | chr2_1:967075-967094 | None:intergenic | 60.0% | |
| GGCGGAAGGAAACCAGCCAA+GGG | - | chr2_1:967104-967123 | Msa0186280:intron | 60.0% | |
| TTGCAGGTGGGCAAAGCTGC+TGG | - | chr2_1:967629-967648 | Msa0186280:intron | 60.0% | |
| ACCGAACGGTGGAATGGGGT+TGG | + | chr2_1:966716-966735 | None:intergenic | 60.0% | |
| GGCGGCGCCCTTCTTATTCA+CGG | + | chr2_1:967075-967094 | None:intergenic | 60.0% | |
| GGCGGAAGGAAACCAGCCAA+GGG | - | chr2_1:967104-967123 | Msa0186280:intron | 60.0% | |
| TTGCAGGTGGGCAAAGCTGC+TGG | - | chr2_1:967629-967648 | Msa0186280:intron | 60.0% | |
| !! | AAGGGCGCCGCCACTACCAA+GGG | - | chr2_1:967083-967102 | Msa0186280:intron | 65.0% |
| !! | CCTTCCGCCCTTGGTAGTGG+CGG | + | chr2_1:967093-967112 | None:intergenic | 65.0% |
| !! | GGCTGGTTTCCTTCCGCCCT+TGG | + | chr2_1:967102-967121 | None:intergenic | 65.0% |
| GGGCGGAAGGAAACCAGCCA+AGG | - | chr2_1:967103-967122 | Msa0186280:intron | 65.0% | |
| !! | AAGGGCGCCGCCACTACCAA+GGG | - | chr2_1:967083-967102 | Msa0186280:intron | 65.0% |
| !! | CCTTCCGCCCTTGGTAGTGG+CGG | + | chr2_1:967093-967112 | None:intergenic | 65.0% |
| !! | GGCTGGTTTCCTTCCGCCCT+TGG | + | chr2_1:967102-967121 | None:intergenic | 65.0% |
| GGGCGGAAGGAAACCAGCCA+AGG | - | chr2_1:967103-967122 | Msa0186280:intron | 65.0% | |
| !! | GAAGGGCGCCGCCACTACCA+AGG | - | chr2_1:967082-967101 | Msa0186280:intron | 70.0% |
| CCGCCACTACCAAGGGCGGA+AGG | - | chr2_1:967090-967109 | Msa0186280:intron | 70.0% | |
| !! | GAAGGGCGCCGCCACTACCA+AGG | - | chr2_1:967082-967101 | Msa0186280:intron | 70.0% |
| CCGCCACTACCAAGGGCGGA+AGG | - | chr2_1:967090-967109 | Msa0186280:intron | 70.0% | |
| GGCGCCGCCACTACCAAGGG+CGG | - | chr2_1:967086-967105 | Msa0186280:intron | 75.0% | |
| GGCGCCGCCACTACCAAGGG+CGG | - | chr2_1:967086-967105 | Msa0186280:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 966538 | 968472 | 966538 | ID=Msa0186280;Name=Msa0186280 |
| chr2_1 | mRNA | 966538 | 968472 | 966538 | ID=Msa0186280-mRNA-1;Parent=Msa0186280;Name=Msa0186280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=204|1|1|1|0.85|0.75|8|334|155 |
| chr2_1 | exon | 966538 | 966889 | 966538 | ID=Msa0186280-mRNA-1:exon:326;Parent=Msa0186280-mRNA-1 |
| chr2_1 | exon | 966982 | 967080 | 966982 | ID=Msa0186280-mRNA-1:exon:325;Parent=Msa0186280-mRNA-1 |
| chr2_1 | exon | 967161 | 967241 | 967161 | ID=Msa0186280-mRNA-1:exon:324;Parent=Msa0186280-mRNA-1 |
| chr2_1 | exon | 967331 | 967375 | 967331 | ID=Msa0186280-mRNA-1:exon:323;Parent=Msa0186280-mRNA-1 |
| chr2_1 | exon | 967457 | 967514 | 967457 | ID=Msa0186280-mRNA-1:exon:322;Parent=Msa0186280-mRNA-1 |
| chr2_1 | exon | 967824 | 967943 | 967824 | ID=Msa0186280-mRNA-1:exon:321;Parent=Msa0186280-mRNA-1 |
| chr2_1 | exon | 968137 | 968191 | 968137 | ID=Msa0186280-mRNA-1:exon:320;Parent=Msa0186280-mRNA-1 |
| chr2_1 | exon | 968277 | 968472 | 968277 | ID=Msa0186280-mRNA-1:exon:319;Parent=Msa0186280-mRNA-1 |
| chr2_1 | five_prime_UTR | 968277 | 968472 | 968277 | ID=Msa0186280-mRNA-1:five_prime_utr;Parent=Msa0186280-mRNA-1 |
| chr2_1 | five_prime_UTR | 968184 | 968191 | 968184 | ID=Msa0186280-mRNA-1:five_prime_utr;Parent=Msa0186280-mRNA-1 |
| chr2_1 | CDS | 968137 | 968183 | 968137 | ID=Msa0186280-mRNA-1:cds;Parent=Msa0186280-mRNA-1 |
| chr2_1 | CDS | 967824 | 967943 | 967824 | ID=Msa0186280-mRNA-1:cds;Parent=Msa0186280-mRNA-1 |
| chr2_1 | CDS | 967457 | 967514 | 967457 | ID=Msa0186280-mRNA-1:cds;Parent=Msa0186280-mRNA-1 |
| chr2_1 | CDS | 967331 | 967375 | 967331 | ID=Msa0186280-mRNA-1:cds;Parent=Msa0186280-mRNA-1 |
| chr2_1 | CDS | 967161 | 967241 | 967161 | ID=Msa0186280-mRNA-1:cds;Parent=Msa0186280-mRNA-1 |
| chr2_1 | CDS | 966982 | 967080 | 966982 | ID=Msa0186280-mRNA-1:cds;Parent=Msa0186280-mRNA-1 |
| chr2_1 | CDS | 966872 | 966889 | 966872 | ID=Msa0186280-mRNA-1:cds;Parent=Msa0186280-mRNA-1 |
| chr2_1 | three_prime_UTR | 966538 | 966871 | 966538 | ID=Msa0186280-mRNA-1:three_prime_utr;Parent=Msa0186280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
