Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173530 | XP_013462296.1 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 8.11e-99 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173530 | sp|P26585|HMGL_SOYBN | 79.508 | 122 | 22 | 2 | 1 | 121 | 1 | 120 | 6.74e-57 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1173530 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0661680 | Msa1173530 | 0.912621 | 1.578318e-83 | -8.615850e-47 |
| Msa0186280 | Msa1173530 | 0.878442 | 2.798643e-69 | -8.615850e-47 |
| Msa0386070 | Msa1173530 | 0.967963 | 5.239219e-128 | -8.615850e-47 |
| Msa0387350 | Msa1173530 | 0.856797 | 2.522707e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173530 | MtrunA17_Chr3g0143991 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 7.46e-103 | 291 |
| Msa1173530 | MtrunA17_Chr5g0407011 | 57.895 | 133 | 48 | 4 | 5 | 137 | 3 | 127 | 1.42e-37 | 125 |
| Msa1173530 | MtrunA17_Chr8g0370431 | 60.150 | 133 | 44 | 5 | 5 | 137 | 3 | 126 | 1.77e-37 | 125 |
| Msa1173530 | MtrunA17_Chr7g0242251 | 70.297 | 101 | 28 | 1 | 41 | 141 | 47 | 145 | 5.84e-36 | 122 |
| Msa1173530 | MtrunA17_Chr1g0212341 | 60.000 | 80 | 32 | 0 | 41 | 120 | 98 | 177 | 5.53e-27 | 100 |
| Msa1173530 | MtrunA17_Chr4g0052011 | 47.674 | 86 | 45 | 0 | 35 | 120 | 54 | 139 | 4.26e-23 | 89.0 |
| Msa1173530 | MtrunA17_Chr1g0155251 | 46.667 | 75 | 39 | 1 | 41 | 115 | 554 | 627 | 1.11e-12 | 64.7 |
| Msa1173530 | MtrunA17_Chr8g0387931 | 35.714 | 98 | 60 | 1 | 41 | 138 | 262 | 356 | 2.94e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173530 | AT1G20693.2 | 66.013 | 153 | 41 | 4 | 1 | 153 | 1 | 142 | 1.03e-53 | 167 |
| Msa1173530 | AT1G20693.3 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.52e-47 | 151 |
| Msa1173530 | AT1G20693.1 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.57e-47 | 151 |
| Msa1173530 | AT1G20696.1 | 63.504 | 137 | 38 | 3 | 1 | 137 | 1 | 125 | 8.50e-46 | 146 |
| Msa1173530 | AT2G17560.3 | 54.483 | 145 | 54 | 4 | 1 | 144 | 1 | 134 | 2.12e-41 | 135 |
| Msa1173530 | AT2G17560.2 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 5.14e-41 | 134 |
| Msa1173530 | AT2G17560.1 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 5.14e-41 | 134 |
| Msa1173530 | AT1G20696.5 | 60.800 | 125 | 39 | 2 | 1 | 125 | 1 | 115 | 8.88e-41 | 134 |
| Msa1173530 | AT1G20696.2 | 63.559 | 118 | 33 | 2 | 1 | 118 | 1 | 108 | 1.11e-40 | 134 |
| Msa1173530 | AT3G51880.2 | 65.517 | 116 | 33 | 2 | 26 | 141 | 36 | 144 | 1.55e-39 | 132 |
| Msa1173530 | AT3G51880.5 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.92e-39 | 132 |
| Msa1173530 | AT3G51880.1 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.92e-39 | 132 |
| Msa1173530 | AT3G51880.3 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.92e-39 | 132 |
| Msa1173530 | AT3G51880.4 | 69.388 | 98 | 25 | 1 | 40 | 137 | 48 | 140 | 2.50e-37 | 125 |
| Msa1173530 | AT1G20696.3 | 66.327 | 98 | 29 | 2 | 53 | 150 | 1 | 94 | 1.62e-33 | 114 |
| Msa1173530 | AT4G35570.1 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.19e-32 | 112 |
| Msa1173530 | AT4G35570.2 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.19e-32 | 112 |
| Msa1173530 | AT1G20696.4 | 64.706 | 85 | 28 | 1 | 53 | 137 | 1 | 83 | 1.86e-28 | 101 |
| Msa1173530 | AT2G34450.4 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.69e-19 | 79.3 |
| Msa1173530 | AT2G34450.3 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.69e-19 | 79.3 |
| Msa1173530 | AT2G34450.1 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.69e-19 | 79.3 |
| Msa1173530 | AT2G34450.2 | 37.000 | 100 | 47 | 2 | 45 | 143 | 63 | 147 | 6.26e-18 | 75.9 |
| Msa1173530 | AT5G23420.1 | 46.739 | 92 | 41 | 2 | 26 | 110 | 89 | 179 | 1.35e-15 | 71.6 |
| Msa1173530 | AT4G23800.1 | 45.000 | 80 | 39 | 2 | 41 | 118 | 375 | 451 | 1.03e-11 | 62.0 |
| Msa1173530 | AT4G23800.2 | 45.000 | 80 | 39 | 2 | 41 | 118 | 369 | 445 | 1.07e-11 | 62.0 |
Find 85 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGTCTCTTAGGCTTGTT+AGG | 0.179440 | 8_1:-3964224 | None:intergenic |
| ACTAAAATAGTTGGATTTAA+AGG | 0.181207 | 8_1:-3965402 | None:intergenic |
| GATAAACATGTCTTACTTCT+AGG | 0.186530 | 8_1:+3965297 | Msa1173530:three_prime_UTR |
| TTTCTTGTTATATGCCTTCA+TGG | 0.203700 | 8_1:-3964904 | None:intergenic |
| TTACTTAGCATCGGCTTTCT+TGG | 0.250421 | 8_1:-3963936 | None:intergenic |
| CTTGGATTCACCCTTGGACT+TGG | 0.277403 | 8_1:-3963918 | None:intergenic |
| CAATCCAATGGTAGGGATTT+AGG | 0.280090 | 8_1:-3963612 | None:intergenic |
| AAAGCACTTGGAGGTCTCTT+AGG | 0.309499 | 8_1:-3964233 | None:intergenic |
| TTAGGCTTGTTAGGGTCCTT+TGG | 0.339552 | 8_1:-3964215 | None:intergenic |
| TTTGGTTCCTTTCCCTTGGC+TGG | 0.339914 | 8_1:-3964197 | None:intergenic |
| GCAGACACAGCTTTGTTGTC+AGG | 0.342321 | 8_1:-3964610 | None:intergenic |
| GTAGATATTAAGCCCGTAAA+AGG | 0.346077 | 8_1:-3963668 | None:intergenic |
| GTCCTTTGGTTCCTTTCCCT+TGG | 0.359297 | 8_1:-3964201 | None:intergenic |
| GGATTTAAAGGTACAGATAA+AGG | 0.361741 | 8_1:-3965390 | None:intergenic |
| GGCTGGTTTCCTTCCGCCCT+TGG | 0.371407 | 8_1:-3964180 | None:intergenic |
| GCTGTTGAGGAAGAAGAATC+TGG | 0.372128 | 8_1:+3965025 | Msa1173530:CDS |
| TTGCAGGTGGGCAAAGCTGC+TGG | 0.380613 | 8_1:+3964709 | Msa1173530:intron |
| TGGGGTTGGAAACTAGGGTT+TGG | 0.387960 | 8_1:-3963780 | None:intergenic |
| GGCTTTCTTGGATTCACCCT+TGG | 0.397041 | 8_1:-3963924 | None:intergenic |
| GGGGTTGGAAACTAGGGTTT+GGG | 0.405858 | 8_1:-3963779 | None:intergenic |
| GTGGAATGGGGTTGGAAACT+AGG | 0.407115 | 8_1:-3963786 | None:intergenic |
| CACCTCTTAACTAAAATAGT+TGG | 0.422641 | 8_1:-3965411 | None:intergenic |
| AACGTACCGAACGGTGGAAT+GGG | 0.424680 | 8_1:-3963799 | None:intergenic |
| TTTCCTTCCGCCCTTGGTAG+TGG | 0.445999 | 8_1:-3964174 | None:intergenic |
| TCCAACCCCATTCCACCGTT+CGG | 0.447103 | 8_1:+3963793 | Msa1173530:five_prime_UTR |
| GCAAAGCTGCTGGAGCAAAA+TGG | 0.450601 | 8_1:+3964719 | Msa1173530:CDS |
| GAAGGCATATAACAAGAAAC+AGG | 0.452913 | 8_1:+3964908 | Msa1173530:CDS |
| GGGTTGGAAACTAGGGTTTG+GGG | 0.453982 | 8_1:-3963778 | None:intergenic |
| GAGGTCTCTTAGGCTTGTTA+GGG | 0.458151 | 8_1:-3964223 | None:intergenic |
| TCTTCTTCCTCAACAGCAGC+TGG | 0.462822 | 8_1:-3965019 | None:intergenic |
| GGCGGCGCCCTTCTTATTCA+CGG | 0.463220 | 8_1:-3964153 | None:intergenic |
| ATGAAAATCAATCCAATGGT+AGG | 0.463826 | 8_1:-3963620 | None:intergenic |
| CAGACACAGCTTTGTTGTCA+GGG | 0.494732 | 8_1:-3964609 | None:intergenic |
| TGGAATGGGGTTGGAAACTA+GGG | 0.504893 | 8_1:-3963785 | None:intergenic |
| CCCGCCTAAATCCCTACCAT+TGG | 0.507483 | 8_1:+3963608 | Msa1173530:five_prime_UTR |
| ATGCAGCAAAAGCAGAGAAA+AGG | 0.511362 | 8_1:+3964862 | Msa1173530:CDS |
| AAACGATGATGCGGCAGGAT+AGG | 0.515254 | 8_1:-3965512 | None:intergenic |
| GGTTGGAAACTAGGGTTTGG+GGG | 0.520276 | 8_1:-3963777 | None:intergenic |
| GATGATGATAACATTTATGT+AGG | 0.521769 | 8_1:+3965226 | Msa1173530:three_prime_UTR |
| TGAAGGTCCAGCTGCTGTTG+AGG | 0.526952 | 8_1:+3965012 | Msa1173530:CDS |
| GAAGGGCGCCGCCACTACCA+AGG | 0.539172 | 8_1:+3964163 | Msa1173530:CDS |
| AAACGTACCGAACGGTGGAA+TGG | 0.540893 | 8_1:-3963800 | None:intergenic |
| GGGCGGAAGGAAACCAGCCA+AGG | 0.544457 | 8_1:+3964184 | Msa1173530:CDS |
| TAGGCTTGCCGTGAATAAGA+AGG | 0.545546 | 8_1:+3964145 | Msa1173530:intron |
| TATGCAAACGATGATGCGGC+AGG | 0.549477 | 8_1:-3965517 | None:intergenic |
| AAGGAAACCAGCCAAGGGAA+AGG | 0.549929 | 8_1:+3964190 | Msa1173530:CDS |
| ACCGAACGGTGGAATGGGGT+TGG | 0.550575 | 8_1:-3963794 | None:intergenic |
| TGTGATTGTTGTCAGGCTGA+AGG | 0.555256 | 8_1:+3964995 | Msa1173530:intron |
| GGATTGAACTTACTTAGCAT+CGG | 0.556269 | 8_1:-3963945 | None:intergenic |
| AAAACGAAGAAAGCACTTGG+AGG | 0.558317 | 8_1:-3964242 | None:intergenic |
| AGCCAAGGGAAAGGAACCAA+AGG | 0.561691 | 8_1:+3964199 | Msa1173530:CDS |
| GAGGATGACGAATAGAAACT+TGG | 0.567255 | 8_1:+3965204 | Msa1173530:exon |
| CTGTTGAGGAAGAAGAATCT+GGG | 0.568023 | 8_1:+3965026 | Msa1173530:CDS |
| AAGGGCGCCGCCACTACCAA+GGG | 0.571773 | 8_1:+3964164 | Msa1173530:CDS |
| CCGCCACTACCAAGGGCGGA+AGG | 0.572782 | 8_1:+3964171 | Msa1173530:CDS |
| GAAAAGACAACATTTACCAA+GGG | 0.573601 | 8_1:-3965334 | None:intergenic |
| TGAAAATCAATCCAATGGTA+GGG | 0.574474 | 8_1:-3963619 | None:intergenic |
| TGAAATGAAAATCAATCCAA+TGG | 0.576914 | 8_1:-3963624 | None:intergenic |
| ACGAGAGACACACTAGGGTA+AGG | 0.580632 | 8_1:-3963702 | None:intergenic |
| TGAAAAGACAACATTTACCA+AGG | 0.587312 | 8_1:-3965335 | None:intergenic |
| ATGAAAACGAAGAAAGCACT+TGG | 0.589018 | 8_1:-3964245 | None:intergenic |
| CATGAAAGGAGCCAAGTCCA+AGG | 0.590256 | 8_1:+3963907 | Msa1173530:exon |
| AAACAGAAGGAAACAAACAT+AGG | 0.591594 | 8_1:-3965543 | None:intergenic |
| TTGTATACGAGAGACACACT+AGG | 0.596814 | 8_1:-3963708 | None:intergenic |
| CCTTCCGCCCTTGGTAGTGG+CGG | 0.599374 | 8_1:-3964171 | None:intergenic |
| TGAAGTGCATGATGAGAATG+AGG | 0.606285 | 8_1:+3965060 | Msa1173530:CDS |
| GGCGCCGCCACTACCAAGGG+CGG | 0.610298 | 8_1:+3964167 | Msa1173530:CDS |
| AGGCTTGCCGTGAATAAGAA+GGG | 0.612713 | 8_1:+3964146 | Msa1173530:intron |
| CTAGGGTAAGGATCAAATGC+GGG | 0.618398 | 8_1:-3963690 | None:intergenic |
| AGAATATGAGAAAACCATGA+AGG | 0.619628 | 8_1:+3964890 | Msa1173530:CDS |
| TGAGAATGAGGATGATGATG+AGG | 0.623282 | 8_1:+3965072 | Msa1173530:CDS |
| TGTATACGAGAGACACACTA+GGG | 0.625797 | 8_1:-3963707 | None:intergenic |
| AATGAGGATGATGATGAGGA+TGG | 0.627725 | 8_1:+3965076 | Msa1173530:CDS |
| ACGTACCGAACGGTGGAATG+GGG | 0.629092 | 8_1:-3963798 | None:intergenic |
| AGAGGAAACGTACCGAACGG+TGG | 0.632057 | 8_1:-3963805 | None:intergenic |
| ATGAAAGGAGCCAAGTCCAA+GGG | 0.636209 | 8_1:+3963908 | Msa1173530:CDS |
| GGCGGAAGGAAACCAGCCAA+GGG | 0.638094 | 8_1:+3964185 | Msa1173530:CDS |
| AGCAAAAGCAGAGAAAAGGA+AGG | 0.642820 | 8_1:+3964866 | Msa1173530:CDS |
| CCAATGGTAGGGATTTAGGC+GGG | 0.648488 | 8_1:-3963608 | None:intergenic |
| GATATATGCAAACGATGATG+CGG | 0.653333 | 8_1:-3965521 | None:intergenic |
| ACGTGAATAGCTAAAATACG+AGG | 0.663789 | 8_1:+3965360 | Msa1173530:three_prime_UTR |
| TCCAATGGTAGGGATTTAGG+CGG | 0.670919 | 8_1:-3963609 | None:intergenic |
| CGTGAATAGCTAAAATACGA+GGG | 0.671366 | 8_1:+3965361 | Msa1173530:three_prime_UTR |
| ACTAGGGTAAGGATCAAATG+CGG | 0.686246 | 8_1:-3963691 | None:intergenic |
| TGATGAGGATGGCAGTGAAG+AGG | 0.697028 | 8_1:+3965087 | Msa1173530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATTCAATTATAATAAT+TGG | - | chr8_1:3964381-3964400 | None:intergenic | 10.0% |
| !! | ATGTATTCAATTATAATAAT+TGG | - | chr8_1:3964381-3964400 | None:intergenic | 10.0% |
| !!! | TGAATTTCAATTTCCTTTTA+CGG | + | chr8_1:3963655-3963674 | Msa1173530:five_prime_UTR | 20.0% |
| !! | AAGAGGAAATTATGAAAAAA+CGG | - | chr8_1:3963969-3963988 | None:intergenic | 20.0% |
| !!! | ATTGATATTGTTGATTTTGA+TGG | + | chr8_1:3964122-3964141 | Msa1173530:intron | 20.0% |
| !!! | TTTTTATTCTGAAATTTGTG+TGG | + | chr8_1:3964544-3964563 | Msa1173530:intron | 20.0% |
| !! | GTATGTACTGTTATATTTAT+TGG | + | chr8_1:3964760-3964779 | Msa1173530:intron | 20.0% |
| !! | ACTAAAATAGTTGGATTTAA+AGG | - | chr8_1:3965405-3965424 | None:intergenic | 20.0% |
| !!! | TGAATTTCAATTTCCTTTTA+CGG | + | chr8_1:3963655-3963674 | Msa1173530:five_prime_UTR | 20.0% |
| !! | AAGAGGAAATTATGAAAAAA+CGG | - | chr8_1:3963969-3963988 | None:intergenic | 20.0% |
| !!! | ATTGATATTGTTGATTTTGA+TGG | + | chr8_1:3964122-3964141 | Msa1173530:intron | 20.0% |
| !!! | TTTTTATTCTGAAATTTGTG+TGG | + | chr8_1:3964544-3964563 | Msa1173530:intron | 20.0% |
| !! | GTATGTACTGTTATATTTAT+TGG | + | chr8_1:3964760-3964779 | Msa1173530:intron | 20.0% |
| !! | ACTAAAATAGTTGGATTTAA+AGG | - | chr8_1:3965405-3965424 | None:intergenic | 20.0% |
| ! | TGAAATGAAAATCAATCCAA+TGG | - | chr8_1:3963627-3963646 | None:intergenic | 25.0% |
| !! | GAATTTCAATTTCCTTTTAC+GGG | + | chr8_1:3963656-3963675 | Msa1173530:five_prime_UTR | 25.0% |
| ! | GCAAAAAATCGAGTAAATTA+GGG | + | chr8_1:3964015-3964034 | Msa1173530:intron | 25.0% |
| !! | AACTAGCATAATTTCTCTTT+TGG | + | chr8_1:3964076-3964095 | Msa1173530:intron | 25.0% |
| !!! | ATATTGTTGATTTTGATGGT+AGG | + | chr8_1:3964126-3964145 | Msa1173530:intron | 25.0% |
| ! | AAATTTGTGTGGTCTTTATA+GGG | + | chr8_1:3964555-3964574 | Msa1173530:intron | 25.0% |
| ! | TGTTGTAAGTAAATGCAAAT+TGG | + | chr8_1:3964947-3964966 | Msa1173530:intron | 25.0% |
| ! | GTTGTAAGTAAATGCAAATT+GGG | + | chr8_1:3964948-3964967 | Msa1173530:intron | 25.0% |
| ! | ATTTATTTGTGATTGTTGTC+AGG | + | chr8_1:3964988-3965007 | Msa1173530:intron | 25.0% |
| ! | TTTGTTGAATTTCACTTTGT+AGG | + | chr8_1:3965130-3965149 | Msa1173530:intron | 25.0% |
| ! | GATGATGATAACATTTATGT+AGG | + | chr8_1:3965226-3965245 | Msa1173530:three_prime_UTR | 25.0% |
| !!! | ATCCAACTATTTTAGTTAAG+AGG | + | chr8_1:3965409-3965428 | Msa1173530:three_prime_UTR | 25.0% |
| ! | TGAAATGAAAATCAATCCAA+TGG | - | chr8_1:3963627-3963646 | None:intergenic | 25.0% |
| !! | GAATTTCAATTTCCTTTTAC+GGG | + | chr8_1:3963656-3963675 | Msa1173530:five_prime_UTR | 25.0% |
| ! | GCAAAAAATCGAGTAAATTA+GGG | + | chr8_1:3964015-3964034 | Msa1173530:intron | 25.0% |
| !! | AACTAGCATAATTTCTCTTT+TGG | + | chr8_1:3964076-3964095 | Msa1173530:intron | 25.0% |
| !!! | ATATTGTTGATTTTGATGGT+AGG | + | chr8_1:3964126-3964145 | Msa1173530:intron | 25.0% |
| ! | AAATTTGTGTGGTCTTTATA+GGG | + | chr8_1:3964555-3964574 | Msa1173530:intron | 25.0% |
| ! | TGTTGTAAGTAAATGCAAAT+TGG | + | chr8_1:3964947-3964966 | Msa1173530:intron | 25.0% |
| ! | GTTGTAAGTAAATGCAAATT+GGG | + | chr8_1:3964948-3964967 | Msa1173530:intron | 25.0% |
| ! | ATTTATTTGTGATTGTTGTC+AGG | + | chr8_1:3964988-3965007 | Msa1173530:intron | 25.0% |
| ! | TTTGTTGAATTTCACTTTGT+AGG | + | chr8_1:3965130-3965149 | Msa1173530:intron | 25.0% |
| ! | GATGATGATAACATTTATGT+AGG | + | chr8_1:3965226-3965245 | Msa1173530:three_prime_UTR | 25.0% |
| !!! | ATCCAACTATTTTAGTTAAG+AGG | + | chr8_1:3965409-3965428 | Msa1173530:three_prime_UTR | 25.0% |
| TGAAAATCAATCCAATGGTA+GGG | - | chr8_1:3963622-3963641 | None:intergenic | 30.0% | |
| ATGAAAATCAATCCAATGGT+AGG | - | chr8_1:3963623-3963642 | None:intergenic | 30.0% | |
| AGCGAATAAAACGATTTAAG+AGG | - | chr8_1:3963986-3964005 | None:intergenic | 30.0% | |
| GGCAAAAAATCGAGTAAATT+AGG | + | chr8_1:3964014-3964033 | Msa1173530:intron | 30.0% | |
| GAAATTTGTGTGGTCTTTAT+AGG | + | chr8_1:3964554-3964573 | Msa1173530:intron | 30.0% | |
| TGCTTATTACATGCGATATA+AGG | - | chr8_1:3964663-3964682 | None:intergenic | 30.0% | |
| ! | CATCTGTATATGAATTTTGC+AGG | + | chr8_1:3964693-3964712 | Msa1173530:intron | 30.0% |
| ! | TGTATATGAATTTTGCAGGT+GGG | + | chr8_1:3964697-3964716 | Msa1173530:intron | 30.0% |
| AGAATATGAGAAAACCATGA+AGG | + | chr8_1:3964890-3964909 | Msa1173530:CDS | 30.0% | |
| ! | TTTCTTGTTATATGCCTTCA+TGG | - | chr8_1:3964907-3964926 | None:intergenic | 30.0% |
| TAAATGCAAATTGGGTAACT+AGG | + | chr8_1:3964956-3964975 | Msa1173530:intron | 30.0% | |
| GATAAACATGTCTTACTTCT+AGG | + | chr8_1:3965297-3965316 | Msa1173530:three_prime_UTR | 30.0% | |
| GAAAAGACAACATTTACCAA+GGG | - | chr8_1:3965337-3965356 | None:intergenic | 30.0% | |
| TGAAAAGACAACATTTACCA+AGG | - | chr8_1:3965338-3965357 | None:intergenic | 30.0% | |
| ! | GGATTTAAAGGTACAGATAA+AGG | - | chr8_1:3965393-3965412 | None:intergenic | 30.0% |
| CACCTCTTAACTAAAATAGT+TGG | - | chr8_1:3965414-3965433 | None:intergenic | 30.0% | |
| TGAAAATCAATCCAATGGTA+GGG | - | chr8_1:3963622-3963641 | None:intergenic | 30.0% | |
| ATGAAAATCAATCCAATGGT+AGG | - | chr8_1:3963623-3963642 | None:intergenic | 30.0% | |
| AGCGAATAAAACGATTTAAG+AGG | - | chr8_1:3963986-3964005 | None:intergenic | 30.0% | |
| GGCAAAAAATCGAGTAAATT+AGG | + | chr8_1:3964014-3964033 | Msa1173530:intron | 30.0% | |
| GAAATTTGTGTGGTCTTTAT+AGG | + | chr8_1:3964554-3964573 | Msa1173530:intron | 30.0% | |
| TGCTTATTACATGCGATATA+AGG | - | chr8_1:3964663-3964682 | None:intergenic | 30.0% | |
| ! | CATCTGTATATGAATTTTGC+AGG | + | chr8_1:3964693-3964712 | Msa1173530:intron | 30.0% |
| ! | TGTATATGAATTTTGCAGGT+GGG | + | chr8_1:3964697-3964716 | Msa1173530:intron | 30.0% |
| AGAATATGAGAAAACCATGA+AGG | + | chr8_1:3964890-3964909 | Msa1173530:CDS | 30.0% | |
| ! | TTTCTTGTTATATGCCTTCA+TGG | - | chr8_1:3964907-3964926 | None:intergenic | 30.0% |
| TAAATGCAAATTGGGTAACT+AGG | + | chr8_1:3964956-3964975 | Msa1173530:intron | 30.0% | |
| GATAAACATGTCTTACTTCT+AGG | + | chr8_1:3965297-3965316 | Msa1173530:three_prime_UTR | 30.0% | |
| GAAAAGACAACATTTACCAA+GGG | - | chr8_1:3965337-3965356 | None:intergenic | 30.0% | |
| TGAAAAGACAACATTTACCA+AGG | - | chr8_1:3965338-3965357 | None:intergenic | 30.0% | |
| ! | GGATTTAAAGGTACAGATAA+AGG | - | chr8_1:3965393-3965412 | None:intergenic | 30.0% |
| CACCTCTTAACTAAAATAGT+TGG | - | chr8_1:3965414-3965433 | None:intergenic | 30.0% | |
| GTAGATATTAAGCCCGTAAA+AGG | - | chr8_1:3963671-3963690 | None:intergenic | 35.0% | |
| GAAAATTGAGCGAAATTGAG+AGG | - | chr8_1:3963826-3963845 | None:intergenic | 35.0% | |
| ! | ACTGCAGTTTTCATCATGAA+AGG | + | chr8_1:3963893-3963912 | Msa1173530:intron | 35.0% |
| GGATTGAACTTACTTAGCAT+CGG | - | chr8_1:3963948-3963967 | None:intergenic | 35.0% | |
| !! | CGTTTTATTCGCTTTCGATT+TGG | + | chr8_1:3963993-3964012 | Msa1173530:intron | 35.0% |
| !! | ATGAAAACGAAGAAAGCACT+TGG | - | chr8_1:3964248-3964267 | None:intergenic | 35.0% |
| ! | CAGTCATAACTGTTTTCACA+CGG | - | chr8_1:3964471-3964490 | None:intergenic | 35.0% |
| ATAAAAATGTCGAAGTCCCA+CGG | - | chr8_1:3964508-3964527 | None:intergenic | 35.0% | |
| ! | GTCTTTATAGGGAGGATTTT+AGG | + | chr8_1:3964566-3964585 | Msa1173530:intron | 35.0% |
| !! | TTTTAGGAAGCAGTTCAAGA+AGG | + | chr8_1:3964582-3964601 | Msa1173530:CDS | 35.0% |
| !!! | AGTATCCGTTGTTGTTTTAC+TGG | + | chr8_1:3964637-3964656 | Msa1173530:intron | 35.0% |
| TAAGGCCAGTAAAACAACAA+CGG | - | chr8_1:3964645-3964664 | None:intergenic | 35.0% | |
| ! | CTGTATATGAATTTTGCAGG+TGG | + | chr8_1:3964696-3964715 | Msa1173530:intron | 35.0% |
| CGTTCAATCACAGCATATAA+TGG | - | chr8_1:3964808-3964827 | None:intergenic | 35.0% | |
| ATATGCTGTGATTGAACGTT+TGG | + | chr8_1:3964810-3964829 | Msa1173530:intron | 35.0% | |
| GTTTGGTCTCTGGATTTATT+AGG | + | chr8_1:3964827-3964846 | Msa1173530:intron | 35.0% | |
| ! | GAAGGCATATAACAAGAAAC+AGG | + | chr8_1:3964908-3964927 | Msa1173530:CDS | 35.0% |
| GCATATAACAAGAAACAGGT+CGG | + | chr8_1:3964912-3964931 | Msa1173530:intron | 35.0% | |
| TTGTTCCTTATGTTTCATGC+AGG | + | chr8_1:3965179-3965198 | Msa1173530:intron | 35.0% | |
| ACGTGAATAGCTAAAATACG+AGG | + | chr8_1:3965360-3965379 | Msa1173530:three_prime_UTR | 35.0% | |
| CGTGAATAGCTAAAATACGA+GGG | + | chr8_1:3965361-3965380 | Msa1173530:three_prime_UTR | 35.0% | |
| !!! | AGAGCTTTTAGTTTCTCTTG+TGG | + | chr8_1:3965446-3965465 | Msa1173530:three_prime_UTR | 35.0% |
| GATATATGCAAACGATGATG+CGG | - | chr8_1:3965524-3965543 | None:intergenic | 35.0% | |
| GTAGATATTAAGCCCGTAAA+AGG | - | chr8_1:3963671-3963690 | None:intergenic | 35.0% | |
| GAAAATTGAGCGAAATTGAG+AGG | - | chr8_1:3963826-3963845 | None:intergenic | 35.0% | |
| ! | ACTGCAGTTTTCATCATGAA+AGG | + | chr8_1:3963893-3963912 | Msa1173530:intron | 35.0% |
| GGATTGAACTTACTTAGCAT+CGG | - | chr8_1:3963948-3963967 | None:intergenic | 35.0% | |
| !! | CGTTTTATTCGCTTTCGATT+TGG | + | chr8_1:3963993-3964012 | Msa1173530:intron | 35.0% |
| !! | ATGAAAACGAAGAAAGCACT+TGG | - | chr8_1:3964248-3964267 | None:intergenic | 35.0% |
| ! | CAGTCATAACTGTTTTCACA+CGG | - | chr8_1:3964471-3964490 | None:intergenic | 35.0% |
| ATAAAAATGTCGAAGTCCCA+CGG | - | chr8_1:3964508-3964527 | None:intergenic | 35.0% | |
| ! | GTCTTTATAGGGAGGATTTT+AGG | + | chr8_1:3964566-3964585 | Msa1173530:intron | 35.0% |
| !! | TTTTAGGAAGCAGTTCAAGA+AGG | + | chr8_1:3964582-3964601 | Msa1173530:CDS | 35.0% |
| !!! | AGTATCCGTTGTTGTTTTAC+TGG | + | chr8_1:3964637-3964656 | Msa1173530:intron | 35.0% |
| TAAGGCCAGTAAAACAACAA+CGG | - | chr8_1:3964645-3964664 | None:intergenic | 35.0% | |
| ! | CTGTATATGAATTTTGCAGG+TGG | + | chr8_1:3964696-3964715 | Msa1173530:intron | 35.0% |
| CGTTCAATCACAGCATATAA+TGG | - | chr8_1:3964808-3964827 | None:intergenic | 35.0% | |
| ATATGCTGTGATTGAACGTT+TGG | + | chr8_1:3964810-3964829 | Msa1173530:intron | 35.0% | |
| GTTTGGTCTCTGGATTTATT+AGG | + | chr8_1:3964827-3964846 | Msa1173530:intron | 35.0% | |
| ! | GAAGGCATATAACAAGAAAC+AGG | + | chr8_1:3964908-3964927 | Msa1173530:CDS | 35.0% |
| GCATATAACAAGAAACAGGT+CGG | + | chr8_1:3964912-3964931 | Msa1173530:intron | 35.0% | |
| TTGTTCCTTATGTTTCATGC+AGG | + | chr8_1:3965179-3965198 | Msa1173530:intron | 35.0% | |
| ACGTGAATAGCTAAAATACG+AGG | + | chr8_1:3965360-3965379 | Msa1173530:three_prime_UTR | 35.0% | |
| CGTGAATAGCTAAAATACGA+GGG | + | chr8_1:3965361-3965380 | Msa1173530:three_prime_UTR | 35.0% | |
| !!! | AGAGCTTTTAGTTTCTCTTG+TGG | + | chr8_1:3965446-3965465 | Msa1173530:three_prime_UTR | 35.0% |
| GATATATGCAAACGATGATG+CGG | - | chr8_1:3965524-3965543 | None:intergenic | 35.0% | |
| CAATCCAATGGTAGGGATTT+AGG | - | chr8_1:3963615-3963634 | None:intergenic | 40.0% | |
| ACTAGGGTAAGGATCAAATG+CGG | - | chr8_1:3963694-3963713 | None:intergenic | 40.0% | |
| TGTATACGAGAGACACACTA+GGG | - | chr8_1:3963710-3963729 | None:intergenic | 40.0% | |
| TTGTATACGAGAGACACACT+AGG | - | chr8_1:3963711-3963730 | None:intergenic | 40.0% | |
| !!! | GCGTTAGTTTTTACAGCGAA+AGG | - | chr8_1:3963864-3963883 | None:intergenic | 40.0% |
| !! | TTACTTAGCATCGGCTTTCT+TGG | - | chr8_1:3963939-3963958 | None:intergenic | 40.0% |
| ! | CGATTTTCAGATCTCAGATC+TGG | - | chr8_1:3964052-3964071 | None:intergenic | 40.0% |
| !! | AAAACGAAGAAAGCACTTGG+AGG | - | chr8_1:3964245-3964264 | None:intergenic | 40.0% |
| ! | GTTTTCACACGGTATAAGAC+AGG | - | chr8_1:3964460-3964479 | None:intergenic | 40.0% |
| TTTGTGTGGTCTTTATAGGG+AGG | + | chr8_1:3964558-3964577 | Msa1173530:intron | 40.0% | |
| !! | TTCTCTGCTTTTGCTGCATA+TGG | - | chr8_1:3964861-3964880 | None:intergenic | 40.0% |
| ATGCAGCAAAAGCAGAGAAA+AGG | + | chr8_1:3964862-3964881 | Msa1173530:CDS | 40.0% | |
| AGCAAAAGCAGAGAAAAGGA+AGG | + | chr8_1:3964866-3964885 | Msa1173530:CDS | 40.0% | |
| CTGTTGAGGAAGAAGAATCT+GGG | + | chr8_1:3965026-3965045 | Msa1173530:CDS | 40.0% | |
| TGAAGTGCATGATGAGAATG+AGG | + | chr8_1:3965060-3965079 | Msa1173530:CDS | 40.0% | |
| ! | TGAGAATGAGGATGATGATG+AGG | + | chr8_1:3965072-3965091 | Msa1173530:CDS | 40.0% |
| ! | AATGAGGATGATGATGAGGA+TGG | + | chr8_1:3965076-3965095 | Msa1173530:CDS | 40.0% |
| TTCCTTATGTTTCATGCAGG+AGG | + | chr8_1:3965182-3965201 | Msa1173530:intron | 40.0% | |
| GAGGATGACGAATAGAAACT+TGG | + | chr8_1:3965204-3965223 | Msa1173530:exon | 40.0% | |
| CAATCCAATGGTAGGGATTT+AGG | - | chr8_1:3963615-3963634 | None:intergenic | 40.0% | |
| ACTAGGGTAAGGATCAAATG+CGG | - | chr8_1:3963694-3963713 | None:intergenic | 40.0% | |
| TGTATACGAGAGACACACTA+GGG | - | chr8_1:3963710-3963729 | None:intergenic | 40.0% | |
| TTGTATACGAGAGACACACT+AGG | - | chr8_1:3963711-3963730 | None:intergenic | 40.0% | |
| !!! | GCGTTAGTTTTTACAGCGAA+AGG | - | chr8_1:3963864-3963883 | None:intergenic | 40.0% |
| !! | TTACTTAGCATCGGCTTTCT+TGG | - | chr8_1:3963939-3963958 | None:intergenic | 40.0% |
| ! | CGATTTTCAGATCTCAGATC+TGG | - | chr8_1:3964052-3964071 | None:intergenic | 40.0% |
| !! | AAAACGAAGAAAGCACTTGG+AGG | - | chr8_1:3964245-3964264 | None:intergenic | 40.0% |
| ! | GTTTTCACACGGTATAAGAC+AGG | - | chr8_1:3964460-3964479 | None:intergenic | 40.0% |
| TTTGTGTGGTCTTTATAGGG+AGG | + | chr8_1:3964558-3964577 | Msa1173530:intron | 40.0% | |
| !! | TTCTCTGCTTTTGCTGCATA+TGG | - | chr8_1:3964861-3964880 | None:intergenic | 40.0% |
| ATGCAGCAAAAGCAGAGAAA+AGG | + | chr8_1:3964862-3964881 | Msa1173530:CDS | 40.0% | |
| AGCAAAAGCAGAGAAAAGGA+AGG | + | chr8_1:3964866-3964885 | Msa1173530:CDS | 40.0% | |
| CTGTTGAGGAAGAAGAATCT+GGG | + | chr8_1:3965026-3965045 | Msa1173530:CDS | 40.0% | |
| TGAAGTGCATGATGAGAATG+AGG | + | chr8_1:3965060-3965079 | Msa1173530:CDS | 40.0% | |
| ! | TGAGAATGAGGATGATGATG+AGG | + | chr8_1:3965072-3965091 | Msa1173530:CDS | 40.0% |
| ! | AATGAGGATGATGATGAGGA+TGG | + | chr8_1:3965076-3965095 | Msa1173530:CDS | 40.0% |
| TTCCTTATGTTTCATGCAGG+AGG | + | chr8_1:3965182-3965201 | Msa1173530:intron | 40.0% | |
| GAGGATGACGAATAGAAACT+TGG | + | chr8_1:3965204-3965223 | Msa1173530:exon | 40.0% | |
| TCCAATGGTAGGGATTTAGG+CGG | - | chr8_1:3963612-3963631 | None:intergenic | 45.0% | |
| CTAGGGTAAGGATCAAATGC+GGG | - | chr8_1:3963693-3963712 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGTTTG+TGG | - | chr8_1:3963744-3963763 | None:intergenic | 45.0% | |
| TGGAATGGGGTTGGAAACTA+GGG | - | chr8_1:3963788-3963807 | None:intergenic | 45.0% | |
| TTGAGAGGAAACGTACCGAA+CGG | - | chr8_1:3963811-3963830 | None:intergenic | 45.0% | |
| ATGAAAGGAGCCAAGTCCAA+GGG | + | chr8_1:3963908-3963927 | Msa1173530:CDS | 45.0% | |
| TAGGCTTGCCGTGAATAAGA+AGG | + | chr8_1:3964145-3964164 | Msa1173530:intron | 45.0% | |
| AGGCTTGCCGTGAATAAGAA+GGG | + | chr8_1:3964146-3964165 | Msa1173530:intron | 45.0% | |
| !! | TTAGGCTTGTTAGGGTCCTT+TGG | - | chr8_1:3964218-3964237 | None:intergenic | 45.0% |
| !! | GAGGTCTCTTAGGCTTGTTA+GGG | - | chr8_1:3964226-3964245 | None:intergenic | 45.0% |
| ! | AAAGCACTTGGAGGTCTCTT+AGG | - | chr8_1:3964236-3964255 | None:intergenic | 45.0% |
| TGCTGAGTTATGATGACCGT+GGG | + | chr8_1:3964489-3964508 | Msa1173530:intron | 45.0% | |
| !! | CAGACACAGCTTTGTTGTCA+GGG | - | chr8_1:3964612-3964631 | None:intergenic | 45.0% |
| GTGATTGAACGTTTGGTCTC+TGG | + | chr8_1:3964817-3964836 | Msa1173530:intron | 45.0% | |
| TGTGATTGTTGTCAGGCTGA+AGG | + | chr8_1:3964995-3965014 | Msa1173530:intron | 45.0% | |
| GCTGTTGAGGAAGAAGAATC+TGG | + | chr8_1:3965025-3965044 | Msa1173530:CDS | 45.0% | |
| CTCCTCCTGCATGAAACATA+AGG | - | chr8_1:3965187-3965206 | None:intergenic | 45.0% | |
| CTTATGTTTCATGCAGGAGG+AGG | + | chr8_1:3965185-3965204 | Msa1173530:intron | 45.0% | |
| ! | GGAATATTTTGCTGCTCCCT+TGG | + | chr8_1:3965318-3965337 | Msa1173530:three_prime_UTR | 45.0% |
| TCCAATGGTAGGGATTTAGG+CGG | - | chr8_1:3963612-3963631 | None:intergenic | 45.0% | |
| CTAGGGTAAGGATCAAATGC+GGG | - | chr8_1:3963693-3963712 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGTTTG+TGG | - | chr8_1:3963744-3963763 | None:intergenic | 45.0% | |
| TGGAATGGGGTTGGAAACTA+GGG | - | chr8_1:3963788-3963807 | None:intergenic | 45.0% | |
| TTGAGAGGAAACGTACCGAA+CGG | - | chr8_1:3963811-3963830 | None:intergenic | 45.0% | |
| ATGAAAGGAGCCAAGTCCAA+GGG | + | chr8_1:3963908-3963927 | Msa1173530:CDS | 45.0% | |
| TAGGCTTGCCGTGAATAAGA+AGG | + | chr8_1:3964145-3964164 | Msa1173530:intron | 45.0% | |
| AGGCTTGCCGTGAATAAGAA+GGG | + | chr8_1:3964146-3964165 | Msa1173530:intron | 45.0% | |
| !! | TTAGGCTTGTTAGGGTCCTT+TGG | - | chr8_1:3964218-3964237 | None:intergenic | 45.0% |
| !! | GAGGTCTCTTAGGCTTGTTA+GGG | - | chr8_1:3964226-3964245 | None:intergenic | 45.0% |
| ! | AAAGCACTTGGAGGTCTCTT+AGG | - | chr8_1:3964236-3964255 | None:intergenic | 45.0% |
| TGCTGAGTTATGATGACCGT+GGG | + | chr8_1:3964489-3964508 | Msa1173530:intron | 45.0% | |
| !! | CAGACACAGCTTTGTTGTCA+GGG | - | chr8_1:3964612-3964631 | None:intergenic | 45.0% |
| GTGATTGAACGTTTGGTCTC+TGG | + | chr8_1:3964817-3964836 | Msa1173530:intron | 45.0% | |
| TGTGATTGTTGTCAGGCTGA+AGG | + | chr8_1:3964995-3965014 | Msa1173530:intron | 45.0% | |
| GCTGTTGAGGAAGAAGAATC+TGG | + | chr8_1:3965025-3965044 | Msa1173530:CDS | 45.0% | |
| CTCCTCCTGCATGAAACATA+AGG | - | chr8_1:3965187-3965206 | None:intergenic | 45.0% | |
| CTTATGTTTCATGCAGGAGG+AGG | + | chr8_1:3965185-3965204 | Msa1173530:intron | 45.0% | |
| ! | GGAATATTTTGCTGCTCCCT+TGG | + | chr8_1:3965318-3965337 | Msa1173530:three_prime_UTR | 45.0% |
| CCAATGGTAGGGATTTAGGC+GGG | - | chr8_1:3963611-3963630 | None:intergenic | 50.0% | |
| ACGAGAGACACACTAGGGTA+AGG | - | chr8_1:3963705-3963724 | None:intergenic | 50.0% | |
| GGTTGGAAACTAGGGTTTGG+GGG | - | chr8_1:3963780-3963799 | None:intergenic | 50.0% | |
| GGGTTGGAAACTAGGGTTTG+GGG | - | chr8_1:3963781-3963800 | None:intergenic | 50.0% | |
| GGGGTTGGAAACTAGGGTTT+GGG | - | chr8_1:3963782-3963801 | None:intergenic | 50.0% | |
| TGGGGTTGGAAACTAGGGTT+TGG | - | chr8_1:3963783-3963802 | None:intergenic | 50.0% | |
| GTGGAATGGGGTTGGAAACT+AGG | - | chr8_1:3963789-3963808 | None:intergenic | 50.0% | |
| AACGTACCGAACGGTGGAAT+GGG | - | chr8_1:3963802-3963821 | None:intergenic | 50.0% | |
| AAACGTACCGAACGGTGGAA+TGG | - | chr8_1:3963803-3963822 | None:intergenic | 50.0% | |
| CATGAAAGGAGCCAAGTCCA+AGG | + | chr8_1:3963907-3963926 | Msa1173530:exon | 50.0% | |
| CTTGGATTCACCCTTGGACT+TGG | - | chr8_1:3963921-3963940 | None:intergenic | 50.0% | |
| GGCTTTCTTGGATTCACCCT+TGG | - | chr8_1:3963927-3963946 | None:intergenic | 50.0% | |
| AAGGAAACCAGCCAAGGGAA+AGG | + | chr8_1:3964190-3964209 | Msa1173530:CDS | 50.0% | |
| ! | TTTGGTTCCTTTCCCTTGGC+TGG | - | chr8_1:3964200-3964219 | None:intergenic | 50.0% |
| AGCCAAGGGAAAGGAACCAA+AGG | + | chr8_1:3964199-3964218 | Msa1173530:CDS | 50.0% | |
| ! | GTCCTTTGGTTCCTTTCCCT+TGG | - | chr8_1:3964204-3964223 | None:intergenic | 50.0% |
| ! | GGAGGTCTCTTAGGCTTGTT+AGG | - | chr8_1:3964227-3964246 | None:intergenic | 50.0% |
| CTGCTGAGTTATGATGACCG+TGG | + | chr8_1:3964488-3964507 | Msa1173530:intron | 50.0% | |
| !! | GCAGACACAGCTTTGTTGTC+AGG | - | chr8_1:3964613-3964632 | None:intergenic | 50.0% |
| GCAAAGCTGCTGGAGCAAAA+TGG | + | chr8_1:3964719-3964738 | Msa1173530:CDS | 50.0% | |
| TCTTCTTCCTCAACAGCAGC+TGG | - | chr8_1:3965022-3965041 | None:intergenic | 50.0% | |
| TGATGAGGATGGCAGTGAAG+AGG | + | chr8_1:3965087-3965106 | Msa1173530:CDS | 50.0% | |
| AAACGATGATGCGGCAGGAT+AGG | - | chr8_1:3965515-3965534 | None:intergenic | 50.0% | |
| TATGCAAACGATGATGCGGC+AGG | - | chr8_1:3965520-3965539 | None:intergenic | 50.0% | |
| CCAATGGTAGGGATTTAGGC+GGG | - | chr8_1:3963611-3963630 | None:intergenic | 50.0% | |
| ACGAGAGACACACTAGGGTA+AGG | - | chr8_1:3963705-3963724 | None:intergenic | 50.0% | |
| GGTTGGAAACTAGGGTTTGG+GGG | - | chr8_1:3963780-3963799 | None:intergenic | 50.0% | |
| GGGTTGGAAACTAGGGTTTG+GGG | - | chr8_1:3963781-3963800 | None:intergenic | 50.0% | |
| GGGGTTGGAAACTAGGGTTT+GGG | - | chr8_1:3963782-3963801 | None:intergenic | 50.0% | |
| TGGGGTTGGAAACTAGGGTT+TGG | - | chr8_1:3963783-3963802 | None:intergenic | 50.0% | |
| GTGGAATGGGGTTGGAAACT+AGG | - | chr8_1:3963789-3963808 | None:intergenic | 50.0% | |
| AACGTACCGAACGGTGGAAT+GGG | - | chr8_1:3963802-3963821 | None:intergenic | 50.0% | |
| AAACGTACCGAACGGTGGAA+TGG | - | chr8_1:3963803-3963822 | None:intergenic | 50.0% | |
| CATGAAAGGAGCCAAGTCCA+AGG | + | chr8_1:3963907-3963926 | Msa1173530:exon | 50.0% | |
| CTTGGATTCACCCTTGGACT+TGG | - | chr8_1:3963921-3963940 | None:intergenic | 50.0% | |
| GGCTTTCTTGGATTCACCCT+TGG | - | chr8_1:3963927-3963946 | None:intergenic | 50.0% | |
| AAGGAAACCAGCCAAGGGAA+AGG | + | chr8_1:3964190-3964209 | Msa1173530:CDS | 50.0% | |
| ! | TTTGGTTCCTTTCCCTTGGC+TGG | - | chr8_1:3964200-3964219 | None:intergenic | 50.0% |
| AGCCAAGGGAAAGGAACCAA+AGG | + | chr8_1:3964199-3964218 | Msa1173530:CDS | 50.0% | |
| ! | GTCCTTTGGTTCCTTTCCCT+TGG | - | chr8_1:3964204-3964223 | None:intergenic | 50.0% |
| ! | GGAGGTCTCTTAGGCTTGTT+AGG | - | chr8_1:3964227-3964246 | None:intergenic | 50.0% |
| CTGCTGAGTTATGATGACCG+TGG | + | chr8_1:3964488-3964507 | Msa1173530:intron | 50.0% | |
| !! | GCAGACACAGCTTTGTTGTC+AGG | - | chr8_1:3964613-3964632 | None:intergenic | 50.0% |
| GCAAAGCTGCTGGAGCAAAA+TGG | + | chr8_1:3964719-3964738 | Msa1173530:CDS | 50.0% | |
| TCTTCTTCCTCAACAGCAGC+TGG | - | chr8_1:3965022-3965041 | None:intergenic | 50.0% | |
| TGATGAGGATGGCAGTGAAG+AGG | + | chr8_1:3965087-3965106 | Msa1173530:CDS | 50.0% | |
| AAACGATGATGCGGCAGGAT+AGG | - | chr8_1:3965515-3965534 | None:intergenic | 50.0% | |
| TATGCAAACGATGATGCGGC+AGG | - | chr8_1:3965520-3965539 | None:intergenic | 50.0% | |
| CCCGCCTAAATCCCTACCAT+TGG | + | chr8_1:3963608-3963627 | Msa1173530:five_prime_UTR | 55.0% | |
| TCCAACCCCATTCCACCGTT+CGG | + | chr8_1:3963793-3963812 | Msa1173530:five_prime_UTR | 55.0% | |
| ACGTACCGAACGGTGGAATG+GGG | - | chr8_1:3963801-3963820 | None:intergenic | 55.0% | |
| AGAGGAAACGTACCGAACGG+TGG | - | chr8_1:3963808-3963827 | None:intergenic | 55.0% | |
| TTTCCTTCCGCCCTTGGTAG+TGG | - | chr8_1:3964177-3964196 | None:intergenic | 55.0% | |
| TGAAGGTCCAGCTGCTGTTG+AGG | + | chr8_1:3965012-3965031 | Msa1173530:CDS | 55.0% | |
| CCCGCCTAAATCCCTACCAT+TGG | + | chr8_1:3963608-3963627 | Msa1173530:five_prime_UTR | 55.0% | |
| TCCAACCCCATTCCACCGTT+CGG | + | chr8_1:3963793-3963812 | Msa1173530:five_prime_UTR | 55.0% | |
| ACGTACCGAACGGTGGAATG+GGG | - | chr8_1:3963801-3963820 | None:intergenic | 55.0% | |
| AGAGGAAACGTACCGAACGG+TGG | - | chr8_1:3963808-3963827 | None:intergenic | 55.0% | |
| TTTCCTTCCGCCCTTGGTAG+TGG | - | chr8_1:3964177-3964196 | None:intergenic | 55.0% | |
| TGAAGGTCCAGCTGCTGTTG+AGG | + | chr8_1:3965012-3965031 | Msa1173530:CDS | 55.0% | |
| ACCGAACGGTGGAATGGGGT+TGG | - | chr8_1:3963797-3963816 | None:intergenic | 60.0% | |
| GGCGGCGCCCTTCTTATTCA+CGG | - | chr8_1:3964156-3964175 | None:intergenic | 60.0% | |
| GGCGGAAGGAAACCAGCCAA+GGG | + | chr8_1:3964185-3964204 | Msa1173530:CDS | 60.0% | |
| TTGCAGGTGGGCAAAGCTGC+TGG | + | chr8_1:3964709-3964728 | Msa1173530:intron | 60.0% | |
| ACCGAACGGTGGAATGGGGT+TGG | - | chr8_1:3963797-3963816 | None:intergenic | 60.0% | |
| GGCGGCGCCCTTCTTATTCA+CGG | - | chr8_1:3964156-3964175 | None:intergenic | 60.0% | |
| GGCGGAAGGAAACCAGCCAA+GGG | + | chr8_1:3964185-3964204 | Msa1173530:CDS | 60.0% | |
| TTGCAGGTGGGCAAAGCTGC+TGG | + | chr8_1:3964709-3964728 | Msa1173530:intron | 60.0% | |
| !! | AAGGGCGCCGCCACTACCAA+GGG | + | chr8_1:3964164-3964183 | Msa1173530:CDS | 65.0% |
| !! | CCTTCCGCCCTTGGTAGTGG+CGG | - | chr8_1:3964174-3964193 | None:intergenic | 65.0% |
| !! | GGCTGGTTTCCTTCCGCCCT+TGG | - | chr8_1:3964183-3964202 | None:intergenic | 65.0% |
| GGGCGGAAGGAAACCAGCCA+AGG | + | chr8_1:3964184-3964203 | Msa1173530:CDS | 65.0% | |
| !! | AAGGGCGCCGCCACTACCAA+GGG | + | chr8_1:3964164-3964183 | Msa1173530:CDS | 65.0% |
| !! | CCTTCCGCCCTTGGTAGTGG+CGG | - | chr8_1:3964174-3964193 | None:intergenic | 65.0% |
| !! | GGCTGGTTTCCTTCCGCCCT+TGG | - | chr8_1:3964183-3964202 | None:intergenic | 65.0% |
| GGGCGGAAGGAAACCAGCCA+AGG | + | chr8_1:3964184-3964203 | Msa1173530:CDS | 65.0% | |
| !! | GAAGGGCGCCGCCACTACCA+AGG | + | chr8_1:3964163-3964182 | Msa1173530:CDS | 70.0% |
| CCGCCACTACCAAGGGCGGA+AGG | + | chr8_1:3964171-3964190 | Msa1173530:CDS | 70.0% | |
| !! | GAAGGGCGCCGCCACTACCA+AGG | + | chr8_1:3964163-3964182 | Msa1173530:CDS | 70.0% |
| CCGCCACTACCAAGGGCGGA+AGG | + | chr8_1:3964171-3964190 | Msa1173530:CDS | 70.0% | |
| GGCGCCGCCACTACCAAGGG+CGG | + | chr8_1:3964167-3964186 | Msa1173530:CDS | 75.0% | |
| GGCGCCGCCACTACCAAGGG+CGG | + | chr8_1:3964167-3964186 | Msa1173530:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 3963602 | 3965552 | 3963602 | ID=Msa1173530;Name=Msa1173530 |
| chr8_1 | mRNA | 3963602 | 3965552 | 3963602 | ID=Msa1173530-mRNA-1;Parent=Msa1173530;Name=Msa1173530-mRNA-1;_AED=0.06;_eAED=0.06;_QI=200|1|1|1|0.75|0.66|9|334|155 |
| chr8_1 | exon | 3963602 | 3963749 | 3963602 | ID=Msa1173530-mRNA-1:exon:1412;Parent=Msa1173530-mRNA-1 |
| chr8_1 | exon | 3963771 | 3963814 | 3963771 | ID=Msa1173530-mRNA-1:exon:1413;Parent=Msa1173530-mRNA-1 |
| chr8_1 | exon | 3963900 | 3963954 | 3963900 | ID=Msa1173530-mRNA-1:exon:1414;Parent=Msa1173530-mRNA-1 |
| chr8_1 | exon | 3964148 | 3964267 | 3964148 | ID=Msa1173530-mRNA-1:exon:1415;Parent=Msa1173530-mRNA-1 |
| chr8_1 | exon | 3964576 | 3964633 | 3964576 | ID=Msa1173530-mRNA-1:exon:1416;Parent=Msa1173530-mRNA-1 |
| chr8_1 | exon | 3964715 | 3964759 | 3964715 | ID=Msa1173530-mRNA-1:exon:1417;Parent=Msa1173530-mRNA-1 |
| chr8_1 | exon | 3964849 | 3964929 | 3964849 | ID=Msa1173530-mRNA-1:exon:1418;Parent=Msa1173530-mRNA-1 |
| chr8_1 | exon | 3965010 | 3965108 | 3965010 | ID=Msa1173530-mRNA-1:exon:1419;Parent=Msa1173530-mRNA-1 |
| chr8_1 | exon | 3965201 | 3965552 | 3965201 | ID=Msa1173530-mRNA-1:exon:1420;Parent=Msa1173530-mRNA-1 |
| chr8_1 | five_prime_UTR | 3963602 | 3963749 | 3963602 | ID=Msa1173530-mRNA-1:five_prime_utr;Parent=Msa1173530-mRNA-1 |
| chr8_1 | five_prime_UTR | 3963771 | 3963814 | 3963771 | ID=Msa1173530-mRNA-1:five_prime_utr;Parent=Msa1173530-mRNA-1 |
| chr8_1 | five_prime_UTR | 3963900 | 3963907 | 3963900 | ID=Msa1173530-mRNA-1:five_prime_utr;Parent=Msa1173530-mRNA-1 |
| chr8_1 | CDS | 3963908 | 3963954 | 3963908 | ID=Msa1173530-mRNA-1:cds;Parent=Msa1173530-mRNA-1 |
| chr8_1 | CDS | 3964148 | 3964267 | 3964148 | ID=Msa1173530-mRNA-1:cds;Parent=Msa1173530-mRNA-1 |
| chr8_1 | CDS | 3964576 | 3964633 | 3964576 | ID=Msa1173530-mRNA-1:cds;Parent=Msa1173530-mRNA-1 |
| chr8_1 | CDS | 3964715 | 3964759 | 3964715 | ID=Msa1173530-mRNA-1:cds;Parent=Msa1173530-mRNA-1 |
| chr8_1 | CDS | 3964849 | 3964929 | 3964849 | ID=Msa1173530-mRNA-1:cds;Parent=Msa1173530-mRNA-1 |
| chr8_1 | CDS | 3965010 | 3965108 | 3965010 | ID=Msa1173530-mRNA-1:cds;Parent=Msa1173530-mRNA-1 |
| chr8_1 | CDS | 3965201 | 3965218 | 3965201 | ID=Msa1173530-mRNA-1:cds;Parent=Msa1173530-mRNA-1 |
| chr8_1 | three_prime_UTR | 3965219 | 3965552 | 3965219 | ID=Msa1173530-mRNA-1:three_prime_utr;Parent=Msa1173530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
