Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387350 | XP_013462296.1 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 8.11e-99 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387350 | sp|P26585|HMGL_SOYBN | 79.508 | 122 | 22 | 2 | 1 | 121 | 1 | 120 | 6.74e-57 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387350 | I3S988 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 3.87e-99 | 291 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0387350 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0186280 | Msa0387350 | 0.966163 | 1.481637e-125 | -8.615850e-47 |
| Msa0386070 | Msa0387350 | 0.870113 | 1.864027e-66 | -8.615850e-47 |
| Msa0387350 | Msa0661680 | 0.901945 | 1.602442e-78 | -8.615850e-47 |
| Msa0387350 | Msa1173530 | 0.856797 | 2.522707e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387350 | MtrunA17_Chr3g0143991 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 7.46e-103 | 291 |
| Msa0387350 | MtrunA17_Chr5g0407011 | 57.895 | 133 | 48 | 4 | 5 | 137 | 3 | 127 | 1.42e-37 | 125 |
| Msa0387350 | MtrunA17_Chr8g0370431 | 60.150 | 133 | 44 | 5 | 5 | 137 | 3 | 126 | 1.77e-37 | 125 |
| Msa0387350 | MtrunA17_Chr7g0242251 | 70.297 | 101 | 28 | 1 | 41 | 141 | 47 | 145 | 5.84e-36 | 122 |
| Msa0387350 | MtrunA17_Chr1g0212341 | 60.000 | 80 | 32 | 0 | 41 | 120 | 98 | 177 | 5.53e-27 | 100 |
| Msa0387350 | MtrunA17_Chr4g0052011 | 47.674 | 86 | 45 | 0 | 35 | 120 | 54 | 139 | 4.26e-23 | 89.0 |
| Msa0387350 | MtrunA17_Chr1g0155251 | 46.667 | 75 | 39 | 1 | 41 | 115 | 554 | 627 | 1.11e-12 | 64.7 |
| Msa0387350 | MtrunA17_Chr8g0387931 | 35.714 | 98 | 60 | 1 | 41 | 138 | 262 | 356 | 2.94e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387350 | AT1G20693.2 | 66.013 | 153 | 41 | 4 | 1 | 153 | 1 | 142 | 1.03e-53 | 167 |
| Msa0387350 | AT1G20693.3 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.52e-47 | 151 |
| Msa0387350 | AT1G20693.1 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.57e-47 | 151 |
| Msa0387350 | AT1G20696.1 | 63.504 | 137 | 38 | 3 | 1 | 137 | 1 | 125 | 8.50e-46 | 146 |
| Msa0387350 | AT2G17560.3 | 54.483 | 145 | 54 | 4 | 1 | 144 | 1 | 134 | 2.12e-41 | 135 |
| Msa0387350 | AT2G17560.2 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 5.14e-41 | 134 |
| Msa0387350 | AT2G17560.1 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 5.14e-41 | 134 |
| Msa0387350 | AT1G20696.5 | 60.800 | 125 | 39 | 2 | 1 | 125 | 1 | 115 | 8.88e-41 | 134 |
| Msa0387350 | AT1G20696.2 | 63.559 | 118 | 33 | 2 | 1 | 118 | 1 | 108 | 1.11e-40 | 134 |
| Msa0387350 | AT3G51880.2 | 65.517 | 116 | 33 | 2 | 26 | 141 | 36 | 144 | 1.55e-39 | 132 |
| Msa0387350 | AT3G51880.5 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.92e-39 | 132 |
| Msa0387350 | AT3G51880.1 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.92e-39 | 132 |
| Msa0387350 | AT3G51880.3 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.92e-39 | 132 |
| Msa0387350 | AT3G51880.4 | 69.388 | 98 | 25 | 1 | 40 | 137 | 48 | 140 | 2.50e-37 | 125 |
| Msa0387350 | AT1G20696.3 | 66.327 | 98 | 29 | 2 | 53 | 150 | 1 | 94 | 1.62e-33 | 114 |
| Msa0387350 | AT4G35570.1 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.19e-32 | 112 |
| Msa0387350 | AT4G35570.2 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.19e-32 | 112 |
| Msa0387350 | AT1G20696.4 | 64.706 | 85 | 28 | 1 | 53 | 137 | 1 | 83 | 1.86e-28 | 101 |
| Msa0387350 | AT2G34450.4 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.69e-19 | 79.3 |
| Msa0387350 | AT2G34450.3 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.69e-19 | 79.3 |
| Msa0387350 | AT2G34450.1 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.69e-19 | 79.3 |
| Msa0387350 | AT2G34450.2 | 37.000 | 100 | 47 | 2 | 45 | 143 | 63 | 147 | 6.26e-18 | 75.9 |
| Msa0387350 | AT5G23420.1 | 46.739 | 92 | 41 | 2 | 26 | 110 | 89 | 179 | 1.35e-15 | 71.6 |
| Msa0387350 | AT4G23800.1 | 45.000 | 80 | 39 | 2 | 41 | 118 | 375 | 451 | 1.03e-11 | 62.0 |
| Msa0387350 | AT4G23800.2 | 45.000 | 80 | 39 | 2 | 41 | 118 | 369 | 445 | 1.07e-11 | 62.0 |
Find 85 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGTCTCTTAGGCTTGTT+AGG | 0.179440 | 3_1:+91282688 | None:intergenic |
| ACTAAAATAGTTGGATTTAA+AGG | 0.181207 | 3_1:+91281510 | None:intergenic |
| GATAAACATGTCTTACTTCT+AGG | 0.186530 | 3_1:-91281615 | Msa0387350:three_prime_UTR |
| TTTCTTGTTATATGCCTTCA+TGG | 0.203700 | 3_1:+91282008 | None:intergenic |
| TTACTTAGCATCGGCTTTCT+TGG | 0.250421 | 3_1:+91282976 | None:intergenic |
| CTTGGATTCACCCTTGGACT+TGG | 0.277403 | 3_1:+91282994 | None:intergenic |
| CAATCCAATGGTAGGGATTT+AGG | 0.280090 | 3_1:+91283300 | None:intergenic |
| AAAGCACTTGGAGGTCTCTT+AGG | 0.309499 | 3_1:+91282679 | None:intergenic |
| TTAGGCTTGTTAGGGTCCTT+TGG | 0.339552 | 3_1:+91282697 | None:intergenic |
| TTTGGTTCCTTTCCCTTGGC+TGG | 0.339914 | 3_1:+91282715 | None:intergenic |
| GCAGACACAGCTTTGTTGTC+AGG | 0.342321 | 3_1:+91282302 | None:intergenic |
| GTAGATATTAAGCCCGTAAA+AGG | 0.346077 | 3_1:+91283244 | None:intergenic |
| GTCCTTTGGTTCCTTTCCCT+TGG | 0.359297 | 3_1:+91282711 | None:intergenic |
| GGATTTAAAGGTACAGATAA+AGG | 0.361741 | 3_1:+91281522 | None:intergenic |
| GGCTGGTTTCCTTCCGCCCT+TGG | 0.371407 | 3_1:+91282732 | None:intergenic |
| GCTGTTGAGGAAGAAGAATC+TGG | 0.372128 | 3_1:-91281887 | Msa0387350:CDS |
| TTGCAGGTGGGCAAAGCTGC+TGG | 0.380613 | 3_1:-91282203 | Msa0387350:intron |
| TGGGGTTGGAAACTAGGGTT+TGG | 0.387960 | 3_1:+91283132 | None:intergenic |
| GGCTTTCTTGGATTCACCCT+TGG | 0.397041 | 3_1:+91282988 | None:intergenic |
| GGGGTTGGAAACTAGGGTTT+GGG | 0.405858 | 3_1:+91283133 | None:intergenic |
| GTGGAATGGGGTTGGAAACT+AGG | 0.407115 | 3_1:+91283126 | None:intergenic |
| CACCTCTTAACTAAAATAGT+TGG | 0.422641 | 3_1:+91281501 | None:intergenic |
| AACGTACCGAACGGTGGAAT+GGG | 0.424680 | 3_1:+91283113 | None:intergenic |
| TTTCCTTCCGCCCTTGGTAG+TGG | 0.445999 | 3_1:+91282738 | None:intergenic |
| TCCAACCCCATTCCACCGTT+CGG | 0.447103 | 3_1:-91283119 | Msa0387350:intron |
| GCAAAGCTGCTGGAGCAAAA+TGG | 0.450601 | 3_1:-91282193 | Msa0387350:CDS |
| GAAGGCATATAACAAGAAAC+AGG | 0.452913 | 3_1:-91282004 | Msa0387350:intron |
| GGGTTGGAAACTAGGGTTTG+GGG | 0.453982 | 3_1:+91283134 | None:intergenic |
| GAGGTCTCTTAGGCTTGTTA+GGG | 0.458151 | 3_1:+91282689 | None:intergenic |
| TCTTCTTCCTCAACAGCAGC+TGG | 0.462822 | 3_1:+91281893 | None:intergenic |
| GGCGGCGCCCTTCTTATTCA+CGG | 0.463220 | 3_1:+91282759 | None:intergenic |
| ATGAAAATCAATCCAATGGT+AGG | 0.463826 | 3_1:+91283292 | None:intergenic |
| CAGACACAGCTTTGTTGTCA+GGG | 0.494732 | 3_1:+91282303 | None:intergenic |
| TGGAATGGGGTTGGAAACTA+GGG | 0.504893 | 3_1:+91283127 | None:intergenic |
| CCCGCCTAAATCCCTACCAT+TGG | 0.507483 | 3_1:-91283304 | Msa0387350:five_prime_UTR |
| ATGCAGCAAAAGCAGAGAAA+AGG | 0.511362 | 3_1:-91282050 | Msa0387350:CDS |
| AAACGATGATGCGGCAGGAT+AGG | 0.515254 | 3_1:+91281400 | None:intergenic |
| GGTTGGAAACTAGGGTTTGG+GGG | 0.520276 | 3_1:+91283135 | None:intergenic |
| GATGATGATAACATTTATGT+AGG | 0.521769 | 3_1:-91281686 | Msa0387350:three_prime_UTR |
| TGAAGGTCCAGCTGCTGTTG+AGG | 0.526952 | 3_1:-91281900 | Msa0387350:CDS |
| GAAGGGCGCCGCCACTACCA+AGG | 0.539172 | 3_1:-91282749 | Msa0387350:CDS |
| AAACGTACCGAACGGTGGAA+TGG | 0.540893 | 3_1:+91283112 | None:intergenic |
| GGGCGGAAGGAAACCAGCCA+AGG | 0.544457 | 3_1:-91282728 | Msa0387350:CDS |
| TAGGCTTGCCGTGAATAAGA+AGG | 0.545546 | 3_1:-91282767 | Msa0387350:CDS |
| TATGCAAACGATGATGCGGC+AGG | 0.549477 | 3_1:+91281395 | None:intergenic |
| AAGGAAACCAGCCAAGGGAA+AGG | 0.549929 | 3_1:-91282722 | Msa0387350:CDS |
| ACCGAACGGTGGAATGGGGT+TGG | 0.550575 | 3_1:+91283118 | None:intergenic |
| TGTGATTGTTGTCAGGCTGA+AGG | 0.555256 | 3_1:-91281917 | Msa0387350:intron |
| GGATTGAACTTACTTAGCAT+CGG | 0.556269 | 3_1:+91282967 | None:intergenic |
| AAAACGAAGAAAGCACTTGG+AGG | 0.558317 | 3_1:+91282670 | None:intergenic |
| AGCCAAGGGAAAGGAACCAA+AGG | 0.561691 | 3_1:-91282713 | Msa0387350:CDS |
| GAGGATGACGAATAGAAACT+TGG | 0.567255 | 3_1:-91281708 | Msa0387350:exon |
| CTGTTGAGGAAGAAGAATCT+GGG | 0.568023 | 3_1:-91281886 | Msa0387350:CDS |
| AAGGGCGCCGCCACTACCAA+GGG | 0.571773 | 3_1:-91282748 | Msa0387350:CDS |
| CCGCCACTACCAAGGGCGGA+AGG | 0.572782 | 3_1:-91282741 | Msa0387350:CDS |
| GAAAAGACAACATTTACCAA+GGG | 0.573601 | 3_1:+91281578 | None:intergenic |
| TGAAAATCAATCCAATGGTA+GGG | 0.574474 | 3_1:+91283293 | None:intergenic |
| TGAAATGAAAATCAATCCAA+TGG | 0.576914 | 3_1:+91283288 | None:intergenic |
| ACGAGAGACACACTAGGGTA+AGG | 0.580632 | 3_1:+91283210 | None:intergenic |
| TGAAAAGACAACATTTACCA+AGG | 0.587312 | 3_1:+91281577 | None:intergenic |
| ATGAAAACGAAGAAAGCACT+TGG | 0.589018 | 3_1:+91282667 | None:intergenic |
| CATGAAAGGAGCCAAGTCCA+AGG | 0.590256 | 3_1:-91283005 | Msa0387350:CDS |
| AAACAGAAGGAAACAAACAT+AGG | 0.591594 | 3_1:+91281369 | None:intergenic |
| TTGTATACGAGAGACACACT+AGG | 0.596814 | 3_1:+91283204 | None:intergenic |
| CCTTCCGCCCTTGGTAGTGG+CGG | 0.599374 | 3_1:+91282741 | None:intergenic |
| TGAAGTGCATGATGAGAATG+AGG | 0.606285 | 3_1:-91281852 | Msa0387350:CDS |
| GGCGCCGCCACTACCAAGGG+CGG | 0.610298 | 3_1:-91282745 | Msa0387350:CDS |
| AGGCTTGCCGTGAATAAGAA+GGG | 0.612713 | 3_1:-91282766 | Msa0387350:CDS |
| CTAGGGTAAGGATCAAATGC+GGG | 0.618398 | 3_1:+91283222 | None:intergenic |
| AGAATATGAGAAAACCATGA+AGG | 0.619628 | 3_1:-91282022 | Msa0387350:CDS |
| TGAGAATGAGGATGATGATG+AGG | 0.623282 | 3_1:-91281840 | Msa0387350:CDS |
| TGTATACGAGAGACACACTA+GGG | 0.625797 | 3_1:+91283205 | None:intergenic |
| AATGAGGATGATGATGAGGA+TGG | 0.627725 | 3_1:-91281836 | Msa0387350:CDS |
| ACGTACCGAACGGTGGAATG+GGG | 0.629092 | 3_1:+91283114 | None:intergenic |
| AGAGGAAACGTACCGAACGG+TGG | 0.632057 | 3_1:+91283107 | None:intergenic |
| ATGAAAGGAGCCAAGTCCAA+GGG | 0.636209 | 3_1:-91283004 | Msa0387350:CDS |
| GGCGGAAGGAAACCAGCCAA+GGG | 0.638094 | 3_1:-91282727 | Msa0387350:CDS |
| AGCAAAAGCAGAGAAAAGGA+AGG | 0.642820 | 3_1:-91282046 | Msa0387350:CDS |
| CCAATGGTAGGGATTTAGGC+GGG | 0.648488 | 3_1:+91283304 | None:intergenic |
| GATATATGCAAACGATGATG+CGG | 0.653333 | 3_1:+91281391 | None:intergenic |
| ACGTGAATAGCTAAAATACG+AGG | 0.663789 | 3_1:-91281552 | Msa0387350:three_prime_UTR |
| TCCAATGGTAGGGATTTAGG+CGG | 0.670919 | 3_1:+91283303 | None:intergenic |
| CGTGAATAGCTAAAATACGA+GGG | 0.671366 | 3_1:-91281551 | Msa0387350:three_prime_UTR |
| ACTAGGGTAAGGATCAAATG+CGG | 0.686246 | 3_1:+91283221 | None:intergenic |
| TGATGAGGATGGCAGTGAAG+AGG | 0.697028 | 3_1:-91281825 | Msa0387350:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATTCAATTATAATAAT+TGG | + | chr3_1:91282161-91282180 | None:intergenic | 10.0% |
| !! | ATGTATTCAATTATAATAAT+TGG | + | chr3_1:91282161-91282180 | None:intergenic | 10.0% |
| !!! | TGAATTTCAATTTCCTTTTA+CGG | - | chr3_1:91281435-91281454 | Msa0387350:three_prime_UTR | 20.0% |
| !! | AAGAGGAAATTATGAAAAAA+CGG | + | chr3_1:91281749-91281768 | None:intergenic | 20.0% |
| !!! | ATTGATATTGTTGATTTTGA+TGG | - | chr3_1:91281902-91281921 | Msa0387350:CDS | 20.0% |
| !!! | TTTTTATTCTGAAATTTGTG+TGG | - | chr3_1:91282324-91282343 | Msa0387350:CDS | 20.0% |
| !! | GTATGTACTGTTATATTTAT+TGG | - | chr3_1:91282540-91282559 | Msa0387350:intron | 20.0% |
| !! | ACTAAAATAGTTGGATTTAA+AGG | + | chr3_1:91283185-91283204 | None:intergenic | 20.0% |
| !!! | TGAATTTCAATTTCCTTTTA+CGG | - | chr3_1:91281435-91281454 | Msa0387350:three_prime_UTR | 20.0% |
| !! | AAGAGGAAATTATGAAAAAA+CGG | + | chr3_1:91281749-91281768 | None:intergenic | 20.0% |
| !!! | ATTGATATTGTTGATTTTGA+TGG | - | chr3_1:91281902-91281921 | Msa0387350:CDS | 20.0% |
| !!! | TTTTTATTCTGAAATTTGTG+TGG | - | chr3_1:91282324-91282343 | Msa0387350:CDS | 20.0% |
| !! | GTATGTACTGTTATATTTAT+TGG | - | chr3_1:91282540-91282559 | Msa0387350:intron | 20.0% |
| !! | ACTAAAATAGTTGGATTTAA+AGG | + | chr3_1:91283185-91283204 | None:intergenic | 20.0% |
| ! | TGAAATGAAAATCAATCCAA+TGG | + | chr3_1:91281407-91281426 | None:intergenic | 25.0% |
| !! | GAATTTCAATTTCCTTTTAC+GGG | - | chr3_1:91281436-91281455 | Msa0387350:three_prime_UTR | 25.0% |
| ! | GCAAAAAATCGAGTAAATTA+GGG | - | chr3_1:91281795-91281814 | Msa0387350:intron | 25.0% |
| !! | AACTAGCATAATTTCTCTTT+TGG | - | chr3_1:91281856-91281875 | Msa0387350:CDS | 25.0% |
| !!! | ATATTGTTGATTTTGATGGT+AGG | - | chr3_1:91281906-91281925 | Msa0387350:intron | 25.0% |
| ! | AAATTTGTGTGGTCTTTATA+GGG | - | chr3_1:91282335-91282354 | Msa0387350:CDS | 25.0% |
| ! | TGTTGTAAGTAAATGCAAAT+TGG | - | chr3_1:91282727-91282746 | Msa0387350:CDS | 25.0% |
| ! | GTTGTAAGTAAATGCAAATT+GGG | - | chr3_1:91282728-91282747 | Msa0387350:CDS | 25.0% |
| ! | ATTTATTTGTGATTGTTGTC+AGG | - | chr3_1:91282768-91282787 | Msa0387350:intron | 25.0% |
| ! | TTTGTTGAATTTCACTTTGT+AGG | - | chr3_1:91282910-91282929 | Msa0387350:intron | 25.0% |
| ! | GATGATGATAACATTTATGT+AGG | - | chr3_1:91283006-91283025 | Msa0387350:CDS | 25.0% |
| !!! | ATCCAACTATTTTAGTTAAG+AGG | - | chr3_1:91283189-91283208 | Msa0387350:five_prime_UTR | 25.0% |
| ! | TGAAATGAAAATCAATCCAA+TGG | + | chr3_1:91281407-91281426 | None:intergenic | 25.0% |
| !! | GAATTTCAATTTCCTTTTAC+GGG | - | chr3_1:91281436-91281455 | Msa0387350:three_prime_UTR | 25.0% |
| ! | GCAAAAAATCGAGTAAATTA+GGG | - | chr3_1:91281795-91281814 | Msa0387350:intron | 25.0% |
| !! | AACTAGCATAATTTCTCTTT+TGG | - | chr3_1:91281856-91281875 | Msa0387350:CDS | 25.0% |
| !!! | ATATTGTTGATTTTGATGGT+AGG | - | chr3_1:91281906-91281925 | Msa0387350:intron | 25.0% |
| ! | AAATTTGTGTGGTCTTTATA+GGG | - | chr3_1:91282335-91282354 | Msa0387350:CDS | 25.0% |
| ! | TGTTGTAAGTAAATGCAAAT+TGG | - | chr3_1:91282727-91282746 | Msa0387350:CDS | 25.0% |
| ! | GTTGTAAGTAAATGCAAATT+GGG | - | chr3_1:91282728-91282747 | Msa0387350:CDS | 25.0% |
| ! | ATTTATTTGTGATTGTTGTC+AGG | - | chr3_1:91282768-91282787 | Msa0387350:intron | 25.0% |
| ! | TTTGTTGAATTTCACTTTGT+AGG | - | chr3_1:91282910-91282929 | Msa0387350:intron | 25.0% |
| ! | GATGATGATAACATTTATGT+AGG | - | chr3_1:91283006-91283025 | Msa0387350:CDS | 25.0% |
| !!! | ATCCAACTATTTTAGTTAAG+AGG | - | chr3_1:91283189-91283208 | Msa0387350:five_prime_UTR | 25.0% |
| TGAAAATCAATCCAATGGTA+GGG | + | chr3_1:91281402-91281421 | None:intergenic | 30.0% | |
| ATGAAAATCAATCCAATGGT+AGG | + | chr3_1:91281403-91281422 | None:intergenic | 30.0% | |
| AGCGAATAAAACGATTTAAG+AGG | + | chr3_1:91281766-91281785 | None:intergenic | 30.0% | |
| GGCAAAAAATCGAGTAAATT+AGG | - | chr3_1:91281794-91281813 | Msa0387350:intron | 30.0% | |
| GAAATTTGTGTGGTCTTTAT+AGG | - | chr3_1:91282334-91282353 | Msa0387350:CDS | 30.0% | |
| TGCTTATTACATGCGATATA+AGG | + | chr3_1:91282443-91282462 | None:intergenic | 30.0% | |
| ! | CATCTGTATATGAATTTTGC+AGG | - | chr3_1:91282473-91282492 | Msa0387350:intron | 30.0% |
| ! | TGTATATGAATTTTGCAGGT+GGG | - | chr3_1:91282477-91282496 | Msa0387350:intron | 30.0% |
| AGAATATGAGAAAACCATGA+AGG | - | chr3_1:91282670-91282689 | Msa0387350:CDS | 30.0% | |
| ! | TTTCTTGTTATATGCCTTCA+TGG | + | chr3_1:91282687-91282706 | None:intergenic | 30.0% |
| TAAATGCAAATTGGGTAACT+AGG | - | chr3_1:91282736-91282755 | Msa0387350:CDS | 30.0% | |
| GATAAACATGTCTTACTTCT+AGG | - | chr3_1:91283077-91283096 | Msa0387350:intron | 30.0% | |
| GAAAAGACAACATTTACCAA+GGG | + | chr3_1:91283117-91283136 | None:intergenic | 30.0% | |
| TGAAAAGACAACATTTACCA+AGG | + | chr3_1:91283118-91283137 | None:intergenic | 30.0% | |
| ! | GGATTTAAAGGTACAGATAA+AGG | + | chr3_1:91283173-91283192 | None:intergenic | 30.0% |
| CACCTCTTAACTAAAATAGT+TGG | + | chr3_1:91283194-91283213 | None:intergenic | 30.0% | |
| TGAAAATCAATCCAATGGTA+GGG | + | chr3_1:91281402-91281421 | None:intergenic | 30.0% | |
| ATGAAAATCAATCCAATGGT+AGG | + | chr3_1:91281403-91281422 | None:intergenic | 30.0% | |
| AGCGAATAAAACGATTTAAG+AGG | + | chr3_1:91281766-91281785 | None:intergenic | 30.0% | |
| GGCAAAAAATCGAGTAAATT+AGG | - | chr3_1:91281794-91281813 | Msa0387350:intron | 30.0% | |
| GAAATTTGTGTGGTCTTTAT+AGG | - | chr3_1:91282334-91282353 | Msa0387350:CDS | 30.0% | |
| TGCTTATTACATGCGATATA+AGG | + | chr3_1:91282443-91282462 | None:intergenic | 30.0% | |
| ! | CATCTGTATATGAATTTTGC+AGG | - | chr3_1:91282473-91282492 | Msa0387350:intron | 30.0% |
| ! | TGTATATGAATTTTGCAGGT+GGG | - | chr3_1:91282477-91282496 | Msa0387350:intron | 30.0% |
| AGAATATGAGAAAACCATGA+AGG | - | chr3_1:91282670-91282689 | Msa0387350:CDS | 30.0% | |
| ! | TTTCTTGTTATATGCCTTCA+TGG | + | chr3_1:91282687-91282706 | None:intergenic | 30.0% |
| TAAATGCAAATTGGGTAACT+AGG | - | chr3_1:91282736-91282755 | Msa0387350:CDS | 30.0% | |
| GATAAACATGTCTTACTTCT+AGG | - | chr3_1:91283077-91283096 | Msa0387350:intron | 30.0% | |
| GAAAAGACAACATTTACCAA+GGG | + | chr3_1:91283117-91283136 | None:intergenic | 30.0% | |
| TGAAAAGACAACATTTACCA+AGG | + | chr3_1:91283118-91283137 | None:intergenic | 30.0% | |
| ! | GGATTTAAAGGTACAGATAA+AGG | + | chr3_1:91283173-91283192 | None:intergenic | 30.0% |
| CACCTCTTAACTAAAATAGT+TGG | + | chr3_1:91283194-91283213 | None:intergenic | 30.0% | |
| GTAGATATTAAGCCCGTAAA+AGG | + | chr3_1:91281451-91281470 | None:intergenic | 35.0% | |
| GAAAATTGAGCGAAATTGAG+AGG | + | chr3_1:91281606-91281625 | None:intergenic | 35.0% | |
| ! | ACTGCAGTTTTCATCATGAA+AGG | - | chr3_1:91281673-91281692 | Msa0387350:three_prime_UTR | 35.0% |
| GGATTGAACTTACTTAGCAT+CGG | + | chr3_1:91281728-91281747 | None:intergenic | 35.0% | |
| !! | CGTTTTATTCGCTTTCGATT+TGG | - | chr3_1:91281773-91281792 | Msa0387350:intron | 35.0% |
| !! | ATGAAAACGAAGAAAGCACT+TGG | + | chr3_1:91282028-91282047 | None:intergenic | 35.0% |
| ! | CAGTCATAACTGTTTTCACA+CGG | + | chr3_1:91282251-91282270 | None:intergenic | 35.0% |
| ATAAAAATGTCGAAGTCCCA+CGG | + | chr3_1:91282288-91282307 | None:intergenic | 35.0% | |
| ! | GTCTTTATAGGGAGGATTTT+AGG | - | chr3_1:91282346-91282365 | Msa0387350:intron | 35.0% |
| !! | TTTTAGGAAGCAGTTCAAGA+AGG | - | chr3_1:91282362-91282381 | Msa0387350:intron | 35.0% |
| !!! | AGTATCCGTTGTTGTTTTAC+TGG | - | chr3_1:91282417-91282436 | Msa0387350:intron | 35.0% |
| TAAGGCCAGTAAAACAACAA+CGG | + | chr3_1:91282425-91282444 | None:intergenic | 35.0% | |
| ! | CTGTATATGAATTTTGCAGG+TGG | - | chr3_1:91282476-91282495 | Msa0387350:intron | 35.0% |
| CGTTCAATCACAGCATATAA+TGG | + | chr3_1:91282588-91282607 | None:intergenic | 35.0% | |
| ATATGCTGTGATTGAACGTT+TGG | - | chr3_1:91282590-91282609 | Msa0387350:intron | 35.0% | |
| GTTTGGTCTCTGGATTTATT+AGG | - | chr3_1:91282607-91282626 | Msa0387350:intron | 35.0% | |
| ! | GAAGGCATATAACAAGAAAC+AGG | - | chr3_1:91282688-91282707 | Msa0387350:CDS | 35.0% |
| GCATATAACAAGAAACAGGT+CGG | - | chr3_1:91282692-91282711 | Msa0387350:CDS | 35.0% | |
| TTGTTCCTTATGTTTCATGC+AGG | - | chr3_1:91282959-91282978 | Msa0387350:intron | 35.0% | |
| ACGTGAATAGCTAAAATACG+AGG | - | chr3_1:91283140-91283159 | Msa0387350:five_prime_UTR | 35.0% | |
| CGTGAATAGCTAAAATACGA+GGG | - | chr3_1:91283141-91283160 | Msa0387350:five_prime_UTR | 35.0% | |
| !!! | AGAGCTTTTAGTTTCTCTTG+TGG | - | chr3_1:91283226-91283245 | Msa0387350:five_prime_UTR | 35.0% |
| GATATATGCAAACGATGATG+CGG | + | chr3_1:91283304-91283323 | None:intergenic | 35.0% | |
| GTAGATATTAAGCCCGTAAA+AGG | + | chr3_1:91281451-91281470 | None:intergenic | 35.0% | |
| GAAAATTGAGCGAAATTGAG+AGG | + | chr3_1:91281606-91281625 | None:intergenic | 35.0% | |
| ! | ACTGCAGTTTTCATCATGAA+AGG | - | chr3_1:91281673-91281692 | Msa0387350:three_prime_UTR | 35.0% |
| GGATTGAACTTACTTAGCAT+CGG | + | chr3_1:91281728-91281747 | None:intergenic | 35.0% | |
| !! | CGTTTTATTCGCTTTCGATT+TGG | - | chr3_1:91281773-91281792 | Msa0387350:intron | 35.0% |
| !! | ATGAAAACGAAGAAAGCACT+TGG | + | chr3_1:91282028-91282047 | None:intergenic | 35.0% |
| ! | CAGTCATAACTGTTTTCACA+CGG | + | chr3_1:91282251-91282270 | None:intergenic | 35.0% |
| ATAAAAATGTCGAAGTCCCA+CGG | + | chr3_1:91282288-91282307 | None:intergenic | 35.0% | |
| ! | GTCTTTATAGGGAGGATTTT+AGG | - | chr3_1:91282346-91282365 | Msa0387350:intron | 35.0% |
| !! | TTTTAGGAAGCAGTTCAAGA+AGG | - | chr3_1:91282362-91282381 | Msa0387350:intron | 35.0% |
| !!! | AGTATCCGTTGTTGTTTTAC+TGG | - | chr3_1:91282417-91282436 | Msa0387350:intron | 35.0% |
| TAAGGCCAGTAAAACAACAA+CGG | + | chr3_1:91282425-91282444 | None:intergenic | 35.0% | |
| ! | CTGTATATGAATTTTGCAGG+TGG | - | chr3_1:91282476-91282495 | Msa0387350:intron | 35.0% |
| CGTTCAATCACAGCATATAA+TGG | + | chr3_1:91282588-91282607 | None:intergenic | 35.0% | |
| ATATGCTGTGATTGAACGTT+TGG | - | chr3_1:91282590-91282609 | Msa0387350:intron | 35.0% | |
| GTTTGGTCTCTGGATTTATT+AGG | - | chr3_1:91282607-91282626 | Msa0387350:intron | 35.0% | |
| ! | GAAGGCATATAACAAGAAAC+AGG | - | chr3_1:91282688-91282707 | Msa0387350:CDS | 35.0% |
| GCATATAACAAGAAACAGGT+CGG | - | chr3_1:91282692-91282711 | Msa0387350:CDS | 35.0% | |
| TTGTTCCTTATGTTTCATGC+AGG | - | chr3_1:91282959-91282978 | Msa0387350:intron | 35.0% | |
| ACGTGAATAGCTAAAATACG+AGG | - | chr3_1:91283140-91283159 | Msa0387350:five_prime_UTR | 35.0% | |
| CGTGAATAGCTAAAATACGA+GGG | - | chr3_1:91283141-91283160 | Msa0387350:five_prime_UTR | 35.0% | |
| !!! | AGAGCTTTTAGTTTCTCTTG+TGG | - | chr3_1:91283226-91283245 | Msa0387350:five_prime_UTR | 35.0% |
| GATATATGCAAACGATGATG+CGG | + | chr3_1:91283304-91283323 | None:intergenic | 35.0% | |
| CAATCCAATGGTAGGGATTT+AGG | + | chr3_1:91281395-91281414 | None:intergenic | 40.0% | |
| ACTAGGGTAAGGATCAAATG+CGG | + | chr3_1:91281474-91281493 | None:intergenic | 40.0% | |
| TGTATACGAGAGACACACTA+GGG | + | chr3_1:91281490-91281509 | None:intergenic | 40.0% | |
| TTGTATACGAGAGACACACT+AGG | + | chr3_1:91281491-91281510 | None:intergenic | 40.0% | |
| !!! | GCGTTAGTTTTTACAGCGAA+AGG | + | chr3_1:91281644-91281663 | None:intergenic | 40.0% |
| !! | TTACTTAGCATCGGCTTTCT+TGG | + | chr3_1:91281719-91281738 | None:intergenic | 40.0% |
| ! | CGATTTTCAGATCTCAGATC+TGG | + | chr3_1:91281832-91281851 | None:intergenic | 40.0% |
| !! | AAAACGAAGAAAGCACTTGG+AGG | + | chr3_1:91282025-91282044 | None:intergenic | 40.0% |
| ! | GTTTTCACACGGTATAAGAC+AGG | + | chr3_1:91282240-91282259 | None:intergenic | 40.0% |
| TTTGTGTGGTCTTTATAGGG+AGG | - | chr3_1:91282338-91282357 | Msa0387350:CDS | 40.0% | |
| !! | TTCTCTGCTTTTGCTGCATA+TGG | + | chr3_1:91282641-91282660 | None:intergenic | 40.0% |
| ATGCAGCAAAAGCAGAGAAA+AGG | - | chr3_1:91282642-91282661 | Msa0387350:intron | 40.0% | |
| AGCAAAAGCAGAGAAAAGGA+AGG | - | chr3_1:91282646-91282665 | Msa0387350:intron | 40.0% | |
| CTGTTGAGGAAGAAGAATCT+GGG | - | chr3_1:91282806-91282825 | Msa0387350:intron | 40.0% | |
| TGAAGTGCATGATGAGAATG+AGG | - | chr3_1:91282840-91282859 | Msa0387350:intron | 40.0% | |
| ! | TGAGAATGAGGATGATGATG+AGG | - | chr3_1:91282852-91282871 | Msa0387350:intron | 40.0% |
| ! | AATGAGGATGATGATGAGGA+TGG | - | chr3_1:91282856-91282875 | Msa0387350:intron | 40.0% |
| TTCCTTATGTTTCATGCAGG+AGG | - | chr3_1:91282962-91282981 | Msa0387350:intron | 40.0% | |
| GAGGATGACGAATAGAAACT+TGG | - | chr3_1:91282984-91283003 | Msa0387350:CDS | 40.0% | |
| CAATCCAATGGTAGGGATTT+AGG | + | chr3_1:91281395-91281414 | None:intergenic | 40.0% | |
| ACTAGGGTAAGGATCAAATG+CGG | + | chr3_1:91281474-91281493 | None:intergenic | 40.0% | |
| TGTATACGAGAGACACACTA+GGG | + | chr3_1:91281490-91281509 | None:intergenic | 40.0% | |
| TTGTATACGAGAGACACACT+AGG | + | chr3_1:91281491-91281510 | None:intergenic | 40.0% | |
| !!! | GCGTTAGTTTTTACAGCGAA+AGG | + | chr3_1:91281644-91281663 | None:intergenic | 40.0% |
| !! | TTACTTAGCATCGGCTTTCT+TGG | + | chr3_1:91281719-91281738 | None:intergenic | 40.0% |
| ! | CGATTTTCAGATCTCAGATC+TGG | + | chr3_1:91281832-91281851 | None:intergenic | 40.0% |
| !! | AAAACGAAGAAAGCACTTGG+AGG | + | chr3_1:91282025-91282044 | None:intergenic | 40.0% |
| ! | GTTTTCACACGGTATAAGAC+AGG | + | chr3_1:91282240-91282259 | None:intergenic | 40.0% |
| TTTGTGTGGTCTTTATAGGG+AGG | - | chr3_1:91282338-91282357 | Msa0387350:CDS | 40.0% | |
| !! | TTCTCTGCTTTTGCTGCATA+TGG | + | chr3_1:91282641-91282660 | None:intergenic | 40.0% |
| ATGCAGCAAAAGCAGAGAAA+AGG | - | chr3_1:91282642-91282661 | Msa0387350:intron | 40.0% | |
| AGCAAAAGCAGAGAAAAGGA+AGG | - | chr3_1:91282646-91282665 | Msa0387350:intron | 40.0% | |
| CTGTTGAGGAAGAAGAATCT+GGG | - | chr3_1:91282806-91282825 | Msa0387350:intron | 40.0% | |
| TGAAGTGCATGATGAGAATG+AGG | - | chr3_1:91282840-91282859 | Msa0387350:intron | 40.0% | |
| ! | TGAGAATGAGGATGATGATG+AGG | - | chr3_1:91282852-91282871 | Msa0387350:intron | 40.0% |
| ! | AATGAGGATGATGATGAGGA+TGG | - | chr3_1:91282856-91282875 | Msa0387350:intron | 40.0% |
| TTCCTTATGTTTCATGCAGG+AGG | - | chr3_1:91282962-91282981 | Msa0387350:intron | 40.0% | |
| GAGGATGACGAATAGAAACT+TGG | - | chr3_1:91282984-91283003 | Msa0387350:CDS | 40.0% | |
| TCCAATGGTAGGGATTTAGG+CGG | + | chr3_1:91281392-91281411 | None:intergenic | 45.0% | |
| CTAGGGTAAGGATCAAATGC+GGG | + | chr3_1:91281473-91281492 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGTTTG+TGG | + | chr3_1:91281524-91281543 | None:intergenic | 45.0% | |
| TGGAATGGGGTTGGAAACTA+GGG | + | chr3_1:91281568-91281587 | None:intergenic | 45.0% | |
| TTGAGAGGAAACGTACCGAA+CGG | + | chr3_1:91281591-91281610 | None:intergenic | 45.0% | |
| ATGAAAGGAGCCAAGTCCAA+GGG | - | chr3_1:91281688-91281707 | Msa0387350:three_prime_UTR | 45.0% | |
| TAGGCTTGCCGTGAATAAGA+AGG | - | chr3_1:91281925-91281944 | Msa0387350:intron | 45.0% | |
| AGGCTTGCCGTGAATAAGAA+GGG | - | chr3_1:91281926-91281945 | Msa0387350:intron | 45.0% | |
| !! | TTAGGCTTGTTAGGGTCCTT+TGG | + | chr3_1:91281998-91282017 | None:intergenic | 45.0% |
| !! | GAGGTCTCTTAGGCTTGTTA+GGG | + | chr3_1:91282006-91282025 | None:intergenic | 45.0% |
| ! | AAAGCACTTGGAGGTCTCTT+AGG | + | chr3_1:91282016-91282035 | None:intergenic | 45.0% |
| TGCTGAGTTATGATGACCGT+GGG | - | chr3_1:91282269-91282288 | Msa0387350:intron | 45.0% | |
| !! | CAGACACAGCTTTGTTGTCA+GGG | + | chr3_1:91282392-91282411 | None:intergenic | 45.0% |
| GTGATTGAACGTTTGGTCTC+TGG | - | chr3_1:91282597-91282616 | Msa0387350:intron | 45.0% | |
| TGTGATTGTTGTCAGGCTGA+AGG | - | chr3_1:91282775-91282794 | Msa0387350:intron | 45.0% | |
| GCTGTTGAGGAAGAAGAATC+TGG | - | chr3_1:91282805-91282824 | Msa0387350:intron | 45.0% | |
| CTCCTCCTGCATGAAACATA+AGG | + | chr3_1:91282967-91282986 | None:intergenic | 45.0% | |
| CTTATGTTTCATGCAGGAGG+AGG | - | chr3_1:91282965-91282984 | Msa0387350:intron | 45.0% | |
| ! | GGAATATTTTGCTGCTCCCT+TGG | - | chr3_1:91283098-91283117 | Msa0387350:intron | 45.0% |
| TCCAATGGTAGGGATTTAGG+CGG | + | chr3_1:91281392-91281411 | None:intergenic | 45.0% | |
| CTAGGGTAAGGATCAAATGC+GGG | + | chr3_1:91281473-91281492 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGTTTG+TGG | + | chr3_1:91281524-91281543 | None:intergenic | 45.0% | |
| TGGAATGGGGTTGGAAACTA+GGG | + | chr3_1:91281568-91281587 | None:intergenic | 45.0% | |
| TTGAGAGGAAACGTACCGAA+CGG | + | chr3_1:91281591-91281610 | None:intergenic | 45.0% | |
| ATGAAAGGAGCCAAGTCCAA+GGG | - | chr3_1:91281688-91281707 | Msa0387350:three_prime_UTR | 45.0% | |
| TAGGCTTGCCGTGAATAAGA+AGG | - | chr3_1:91281925-91281944 | Msa0387350:intron | 45.0% | |
| AGGCTTGCCGTGAATAAGAA+GGG | - | chr3_1:91281926-91281945 | Msa0387350:intron | 45.0% | |
| !! | TTAGGCTTGTTAGGGTCCTT+TGG | + | chr3_1:91281998-91282017 | None:intergenic | 45.0% |
| !! | GAGGTCTCTTAGGCTTGTTA+GGG | + | chr3_1:91282006-91282025 | None:intergenic | 45.0% |
| ! | AAAGCACTTGGAGGTCTCTT+AGG | + | chr3_1:91282016-91282035 | None:intergenic | 45.0% |
| TGCTGAGTTATGATGACCGT+GGG | - | chr3_1:91282269-91282288 | Msa0387350:intron | 45.0% | |
| !! | CAGACACAGCTTTGTTGTCA+GGG | + | chr3_1:91282392-91282411 | None:intergenic | 45.0% |
| GTGATTGAACGTTTGGTCTC+TGG | - | chr3_1:91282597-91282616 | Msa0387350:intron | 45.0% | |
| TGTGATTGTTGTCAGGCTGA+AGG | - | chr3_1:91282775-91282794 | Msa0387350:intron | 45.0% | |
| GCTGTTGAGGAAGAAGAATC+TGG | - | chr3_1:91282805-91282824 | Msa0387350:intron | 45.0% | |
| CTCCTCCTGCATGAAACATA+AGG | + | chr3_1:91282967-91282986 | None:intergenic | 45.0% | |
| CTTATGTTTCATGCAGGAGG+AGG | - | chr3_1:91282965-91282984 | Msa0387350:intron | 45.0% | |
| ! | GGAATATTTTGCTGCTCCCT+TGG | - | chr3_1:91283098-91283117 | Msa0387350:intron | 45.0% |
| CCAATGGTAGGGATTTAGGC+GGG | + | chr3_1:91281391-91281410 | None:intergenic | 50.0% | |
| ACGAGAGACACACTAGGGTA+AGG | + | chr3_1:91281485-91281504 | None:intergenic | 50.0% | |
| GGTTGGAAACTAGGGTTTGG+GGG | + | chr3_1:91281560-91281579 | None:intergenic | 50.0% | |
| GGGTTGGAAACTAGGGTTTG+GGG | + | chr3_1:91281561-91281580 | None:intergenic | 50.0% | |
| GGGGTTGGAAACTAGGGTTT+GGG | + | chr3_1:91281562-91281581 | None:intergenic | 50.0% | |
| TGGGGTTGGAAACTAGGGTT+TGG | + | chr3_1:91281563-91281582 | None:intergenic | 50.0% | |
| GTGGAATGGGGTTGGAAACT+AGG | + | chr3_1:91281569-91281588 | None:intergenic | 50.0% | |
| AACGTACCGAACGGTGGAAT+GGG | + | chr3_1:91281582-91281601 | None:intergenic | 50.0% | |
| AAACGTACCGAACGGTGGAA+TGG | + | chr3_1:91281583-91281602 | None:intergenic | 50.0% | |
| CATGAAAGGAGCCAAGTCCA+AGG | - | chr3_1:91281687-91281706 | Msa0387350:three_prime_UTR | 50.0% | |
| CTTGGATTCACCCTTGGACT+TGG | + | chr3_1:91281701-91281720 | None:intergenic | 50.0% | |
| GGCTTTCTTGGATTCACCCT+TGG | + | chr3_1:91281707-91281726 | None:intergenic | 50.0% | |
| AAGGAAACCAGCCAAGGGAA+AGG | - | chr3_1:91281970-91281989 | Msa0387350:intron | 50.0% | |
| ! | TTTGGTTCCTTTCCCTTGGC+TGG | + | chr3_1:91281980-91281999 | None:intergenic | 50.0% |
| AGCCAAGGGAAAGGAACCAA+AGG | - | chr3_1:91281979-91281998 | Msa0387350:intron | 50.0% | |
| ! | GTCCTTTGGTTCCTTTCCCT+TGG | + | chr3_1:91281984-91282003 | None:intergenic | 50.0% |
| ! | GGAGGTCTCTTAGGCTTGTT+AGG | + | chr3_1:91282007-91282026 | None:intergenic | 50.0% |
| CTGCTGAGTTATGATGACCG+TGG | - | chr3_1:91282268-91282287 | Msa0387350:intron | 50.0% | |
| !! | GCAGACACAGCTTTGTTGTC+AGG | + | chr3_1:91282393-91282412 | None:intergenic | 50.0% |
| GCAAAGCTGCTGGAGCAAAA+TGG | - | chr3_1:91282499-91282518 | Msa0387350:intron | 50.0% | |
| TCTTCTTCCTCAACAGCAGC+TGG | + | chr3_1:91282802-91282821 | None:intergenic | 50.0% | |
| TGATGAGGATGGCAGTGAAG+AGG | - | chr3_1:91282867-91282886 | Msa0387350:intron | 50.0% | |
| AAACGATGATGCGGCAGGAT+AGG | + | chr3_1:91283295-91283314 | None:intergenic | 50.0% | |
| TATGCAAACGATGATGCGGC+AGG | + | chr3_1:91283300-91283319 | None:intergenic | 50.0% | |
| CCAATGGTAGGGATTTAGGC+GGG | + | chr3_1:91281391-91281410 | None:intergenic | 50.0% | |
| ACGAGAGACACACTAGGGTA+AGG | + | chr3_1:91281485-91281504 | None:intergenic | 50.0% | |
| GGTTGGAAACTAGGGTTTGG+GGG | + | chr3_1:91281560-91281579 | None:intergenic | 50.0% | |
| GGGTTGGAAACTAGGGTTTG+GGG | + | chr3_1:91281561-91281580 | None:intergenic | 50.0% | |
| GGGGTTGGAAACTAGGGTTT+GGG | + | chr3_1:91281562-91281581 | None:intergenic | 50.0% | |
| TGGGGTTGGAAACTAGGGTT+TGG | + | chr3_1:91281563-91281582 | None:intergenic | 50.0% | |
| GTGGAATGGGGTTGGAAACT+AGG | + | chr3_1:91281569-91281588 | None:intergenic | 50.0% | |
| AACGTACCGAACGGTGGAAT+GGG | + | chr3_1:91281582-91281601 | None:intergenic | 50.0% | |
| AAACGTACCGAACGGTGGAA+TGG | + | chr3_1:91281583-91281602 | None:intergenic | 50.0% | |
| CATGAAAGGAGCCAAGTCCA+AGG | - | chr3_1:91281687-91281706 | Msa0387350:three_prime_UTR | 50.0% | |
| CTTGGATTCACCCTTGGACT+TGG | + | chr3_1:91281701-91281720 | None:intergenic | 50.0% | |
| GGCTTTCTTGGATTCACCCT+TGG | + | chr3_1:91281707-91281726 | None:intergenic | 50.0% | |
| AAGGAAACCAGCCAAGGGAA+AGG | - | chr3_1:91281970-91281989 | Msa0387350:intron | 50.0% | |
| ! | TTTGGTTCCTTTCCCTTGGC+TGG | + | chr3_1:91281980-91281999 | None:intergenic | 50.0% |
| AGCCAAGGGAAAGGAACCAA+AGG | - | chr3_1:91281979-91281998 | Msa0387350:intron | 50.0% | |
| ! | GTCCTTTGGTTCCTTTCCCT+TGG | + | chr3_1:91281984-91282003 | None:intergenic | 50.0% |
| ! | GGAGGTCTCTTAGGCTTGTT+AGG | + | chr3_1:91282007-91282026 | None:intergenic | 50.0% |
| CTGCTGAGTTATGATGACCG+TGG | - | chr3_1:91282268-91282287 | Msa0387350:intron | 50.0% | |
| !! | GCAGACACAGCTTTGTTGTC+AGG | + | chr3_1:91282393-91282412 | None:intergenic | 50.0% |
| GCAAAGCTGCTGGAGCAAAA+TGG | - | chr3_1:91282499-91282518 | Msa0387350:intron | 50.0% | |
| TCTTCTTCCTCAACAGCAGC+TGG | + | chr3_1:91282802-91282821 | None:intergenic | 50.0% | |
| TGATGAGGATGGCAGTGAAG+AGG | - | chr3_1:91282867-91282886 | Msa0387350:intron | 50.0% | |
| AAACGATGATGCGGCAGGAT+AGG | + | chr3_1:91283295-91283314 | None:intergenic | 50.0% | |
| TATGCAAACGATGATGCGGC+AGG | + | chr3_1:91283300-91283319 | None:intergenic | 50.0% | |
| CCCGCCTAAATCCCTACCAT+TGG | - | chr3_1:91281388-91281407 | Msa0387350:three_prime_UTR | 55.0% | |
| TCCAACCCCATTCCACCGTT+CGG | - | chr3_1:91281573-91281592 | Msa0387350:three_prime_UTR | 55.0% | |
| ACGTACCGAACGGTGGAATG+GGG | + | chr3_1:91281581-91281600 | None:intergenic | 55.0% | |
| AGAGGAAACGTACCGAACGG+TGG | + | chr3_1:91281588-91281607 | None:intergenic | 55.0% | |
| TTTCCTTCCGCCCTTGGTAG+TGG | + | chr3_1:91281957-91281976 | None:intergenic | 55.0% | |
| TGAAGGTCCAGCTGCTGTTG+AGG | - | chr3_1:91282792-91282811 | Msa0387350:intron | 55.0% | |
| CCCGCCTAAATCCCTACCAT+TGG | - | chr3_1:91281388-91281407 | Msa0387350:three_prime_UTR | 55.0% | |
| TCCAACCCCATTCCACCGTT+CGG | - | chr3_1:91281573-91281592 | Msa0387350:three_prime_UTR | 55.0% | |
| ACGTACCGAACGGTGGAATG+GGG | + | chr3_1:91281581-91281600 | None:intergenic | 55.0% | |
| AGAGGAAACGTACCGAACGG+TGG | + | chr3_1:91281588-91281607 | None:intergenic | 55.0% | |
| TTTCCTTCCGCCCTTGGTAG+TGG | + | chr3_1:91281957-91281976 | None:intergenic | 55.0% | |
| TGAAGGTCCAGCTGCTGTTG+AGG | - | chr3_1:91282792-91282811 | Msa0387350:intron | 55.0% | |
| ACCGAACGGTGGAATGGGGT+TGG | + | chr3_1:91281577-91281596 | None:intergenic | 60.0% | |
| GGCGGCGCCCTTCTTATTCA+CGG | + | chr3_1:91281936-91281955 | None:intergenic | 60.0% | |
| GGCGGAAGGAAACCAGCCAA+GGG | - | chr3_1:91281965-91281984 | Msa0387350:intron | 60.0% | |
| TTGCAGGTGGGCAAAGCTGC+TGG | - | chr3_1:91282489-91282508 | Msa0387350:intron | 60.0% | |
| ACCGAACGGTGGAATGGGGT+TGG | + | chr3_1:91281577-91281596 | None:intergenic | 60.0% | |
| GGCGGCGCCCTTCTTATTCA+CGG | + | chr3_1:91281936-91281955 | None:intergenic | 60.0% | |
| GGCGGAAGGAAACCAGCCAA+GGG | - | chr3_1:91281965-91281984 | Msa0387350:intron | 60.0% | |
| TTGCAGGTGGGCAAAGCTGC+TGG | - | chr3_1:91282489-91282508 | Msa0387350:intron | 60.0% | |
| !! | AAGGGCGCCGCCACTACCAA+GGG | - | chr3_1:91281944-91281963 | Msa0387350:intron | 65.0% |
| !! | CCTTCCGCCCTTGGTAGTGG+CGG | + | chr3_1:91281954-91281973 | None:intergenic | 65.0% |
| !! | GGCTGGTTTCCTTCCGCCCT+TGG | + | chr3_1:91281963-91281982 | None:intergenic | 65.0% |
| GGGCGGAAGGAAACCAGCCA+AGG | - | chr3_1:91281964-91281983 | Msa0387350:intron | 65.0% | |
| !! | AAGGGCGCCGCCACTACCAA+GGG | - | chr3_1:91281944-91281963 | Msa0387350:intron | 65.0% |
| !! | CCTTCCGCCCTTGGTAGTGG+CGG | + | chr3_1:91281954-91281973 | None:intergenic | 65.0% |
| !! | GGCTGGTTTCCTTCCGCCCT+TGG | + | chr3_1:91281963-91281982 | None:intergenic | 65.0% |
| GGGCGGAAGGAAACCAGCCA+AGG | - | chr3_1:91281964-91281983 | Msa0387350:intron | 65.0% | |
| !! | GAAGGGCGCCGCCACTACCA+AGG | - | chr3_1:91281943-91281962 | Msa0387350:intron | 70.0% |
| CCGCCACTACCAAGGGCGGA+AGG | - | chr3_1:91281951-91281970 | Msa0387350:intron | 70.0% | |
| !! | GAAGGGCGCCGCCACTACCA+AGG | - | chr3_1:91281943-91281962 | Msa0387350:intron | 70.0% |
| CCGCCACTACCAAGGGCGGA+AGG | - | chr3_1:91281951-91281970 | Msa0387350:intron | 70.0% | |
| GGCGCCGCCACTACCAAGGG+CGG | - | chr3_1:91281947-91281966 | Msa0387350:intron | 75.0% | |
| GGCGCCGCCACTACCAAGGG+CGG | - | chr3_1:91281947-91281966 | Msa0387350:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 91281382 | 91283332 | 91281382 | ID=Msa0387350;Name=Msa0387350 |
| chr3_1 | mRNA | 91281382 | 91283332 | 91281382 | ID=Msa0387350-mRNA-1;Parent=Msa0387350;Name=Msa0387350-mRNA-1;_AED=0.06;_eAED=0.06;_QI=200|1|1|1|0.75|0.66|9|334|155 |
| chr3_1 | exon | 91281382 | 91281733 | 91281382 | ID=Msa0387350-mRNA-1:exon:25420;Parent=Msa0387350-mRNA-1 |
| chr3_1 | exon | 91281826 | 91281924 | 91281826 | ID=Msa0387350-mRNA-1:exon:25419;Parent=Msa0387350-mRNA-1 |
| chr3_1 | exon | 91282005 | 91282085 | 91282005 | ID=Msa0387350-mRNA-1:exon:25418;Parent=Msa0387350-mRNA-1 |
| chr3_1 | exon | 91282175 | 91282219 | 91282175 | ID=Msa0387350-mRNA-1:exon:25417;Parent=Msa0387350-mRNA-1 |
| chr3_1 | exon | 91282301 | 91282358 | 91282301 | ID=Msa0387350-mRNA-1:exon:25416;Parent=Msa0387350-mRNA-1 |
| chr3_1 | exon | 91282667 | 91282786 | 91282667 | ID=Msa0387350-mRNA-1:exon:25415;Parent=Msa0387350-mRNA-1 |
| chr3_1 | exon | 91282980 | 91283034 | 91282980 | ID=Msa0387350-mRNA-1:exon:25414;Parent=Msa0387350-mRNA-1 |
| chr3_1 | exon | 91283120 | 91283163 | 91283120 | ID=Msa0387350-mRNA-1:exon:25413;Parent=Msa0387350-mRNA-1 |
| chr3_1 | exon | 91283185 | 91283332 | 91283185 | ID=Msa0387350-mRNA-1:exon:25412;Parent=Msa0387350-mRNA-1 |
| chr3_1 | five_prime_UTR | 91283185 | 91283332 | 91283185 | ID=Msa0387350-mRNA-1:five_prime_utr;Parent=Msa0387350-mRNA-1 |
| chr3_1 | five_prime_UTR | 91283120 | 91283163 | 91283120 | ID=Msa0387350-mRNA-1:five_prime_utr;Parent=Msa0387350-mRNA-1 |
| chr3_1 | five_prime_UTR | 91283027 | 91283034 | 91283027 | ID=Msa0387350-mRNA-1:five_prime_utr;Parent=Msa0387350-mRNA-1 |
| chr3_1 | CDS | 91282980 | 91283026 | 91282980 | ID=Msa0387350-mRNA-1:cds;Parent=Msa0387350-mRNA-1 |
| chr3_1 | CDS | 91282667 | 91282786 | 91282667 | ID=Msa0387350-mRNA-1:cds;Parent=Msa0387350-mRNA-1 |
| chr3_1 | CDS | 91282301 | 91282358 | 91282301 | ID=Msa0387350-mRNA-1:cds;Parent=Msa0387350-mRNA-1 |
| chr3_1 | CDS | 91282175 | 91282219 | 91282175 | ID=Msa0387350-mRNA-1:cds;Parent=Msa0387350-mRNA-1 |
| chr3_1 | CDS | 91282005 | 91282085 | 91282005 | ID=Msa0387350-mRNA-1:cds;Parent=Msa0387350-mRNA-1 |
| chr3_1 | CDS | 91281826 | 91281924 | 91281826 | ID=Msa0387350-mRNA-1:cds;Parent=Msa0387350-mRNA-1 |
| chr3_1 | CDS | 91281716 | 91281733 | 91281716 | ID=Msa0387350-mRNA-1:cds;Parent=Msa0387350-mRNA-1 |
| chr3_1 | three_prime_UTR | 91281382 | 91281715 | 91281382 | ID=Msa0387350-mRNA-1:three_prime_utr;Parent=Msa0387350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
