AlfalfaGEDB | Msa0386070

M. sativa cultivar zhongmu-4 / Msa0386070

KEGG: K10802|K11296
GO: GO:0000785 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00505.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0386070	XP_013462296.1	98.710	155	2	0	1	155	1	155	8.11e-99	291

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0386070	sp\|P26585\|HMGL_SOYBN	79.508	122	22	2	1	121	1	120	6.74e-57	177

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0386070	I3S988	98.710	155	2	0	1	155	1	155	3.87e-99	291

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0386070	TR	HMG

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0186280	Msa0386070	0.918339	1.759783e-86	-8.615850e-47
Msa0386070	Msa0387350	0.870113	1.864027e-66	-8.615850e-47
Msa0386070	Msa0661680	0.870714	1.184123e-66	-8.615850e-47
Msa0386070	Msa1173530	0.967963	5.239219e-128	-8.615850e-47

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0386070	MtrunA17_Chr3g0143991	98.710	155	2	0	1	155	1	155	7.46e-103	291
Msa0386070	MtrunA17_Chr5g0407011	57.895	133	48	4	5	137	3	127	1.42e-37	125
Msa0386070	MtrunA17_Chr8g0370431	60.150	133	44	5	5	137	3	126	1.77e-37	125
Msa0386070	MtrunA17_Chr7g0242251	70.297	101	28	1	41	141	47	145	5.84e-36	122
Msa0386070	MtrunA17_Chr1g0212341	60.000	80	32	0	41	120	98	177	5.53e-27	100
Msa0386070	MtrunA17_Chr4g0052011	47.674	86	45	0	35	120	54	139	4.26e-23	89.0
Msa0386070	MtrunA17_Chr1g0155251	46.667	75	39	1	41	115	554	627	1.11e-12	64.7
Msa0386070	MtrunA17_Chr8g0387931	35.714	98	60	1	41	138	262	356	2.94e-11	60.5

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0386070	AT1G20693.2	66.013	153	41	4	1	153	1	142	1.03e-53	167
Msa0386070	AT1G20693.3	65.693	137	38	3	1	137	1	128	1.52e-47	151
Msa0386070	AT1G20693.1	65.693	137	38	3	1	137	1	128	1.57e-47	151
Msa0386070	AT1G20696.1	63.504	137	38	3	1	137	1	125	8.50e-46	146
Msa0386070	AT2G17560.3	54.483	145	54	4	1	144	1	134	2.12e-41	135
Msa0386070	AT2G17560.2	52.258	155	56	4	1	155	1	137	5.14e-41	134
Msa0386070	AT2G17560.1	52.258	155	56	4	1	155	1	137	5.14e-41	134
Msa0386070	AT1G20696.5	60.800	125	39	2	1	125	1	115	8.88e-41	134
Msa0386070	AT1G20696.2	63.559	118	33	2	1	118	1	108	1.11e-40	134
Msa0386070	AT3G51880.2	65.517	116	33	2	26	141	36	144	1.55e-39	132

Showing 1 to 10 of 25 entries

Previous1 2 3Next

Find 85 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAAGAAAGCACTTGG+AGG	0.558317	3_1:-89828179	None:intergenic
AAACAGAAGGAAACAAACAT+AGG	0.591594	3_1:-89829481	None:intergenic
AAACGATGATGCGGCAGGAT+AGG	0.515254	3_1:-89829450	None:intergenic
AAACGTACCGAACGGTGGAA+TGG	0.540893	3_1:-89827737	None:intergenic
AAAGCACTTGGAGGTCTCTT+AGG	0.309499	3_1:-89828170	None:intergenic
AACGTACCGAACGGTGGAAT+GGG	0.424680	3_1:-89827736	None:intergenic
AAGGAAACCAGCCAAGGGAA+AGG	0.549929	3_1:+89828127	Msa0386070:CDS
AAGGGCGCCGCCACTACCAA+GGG	0.571773	3_1:+89828101	Msa0386070:CDS
AATGAGGATGATGATGAGGA+TGG	0.627725	3_1:+89829014	Msa0386070:CDS
ACCGAACGGTGGAATGGGGT+TGG	0.550575	3_1:-89827731	None:intergenic

Showing 1 to 10 of 85 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGAAAATCAATCCAATGGTA+GGG	-	chr3_1:89827565-89827584	None:intergenic	30.0%
ATGAAAATCAATCCAATGGT+AGG	-	chr3_1:89827566-89827585	None:intergenic	30.0%
AGCGAATAAAACGATTTAAG+AGG	-	chr3_1:89827923-89827942	None:intergenic	30.0%
GGCAAAAAATCGAGTAAATT+AGG	+	chr3_1:89827951-89827970	Msa0386070:intron	30.0%
ATAAAAATGTCAAAGTCCCA+TGG	-	chr3_1:89828446-89828465	None:intergenic	30.0%
GAAATTTGTGTGGTCTTTAT+AGG	+	chr3_1:89828492-89828511	Msa0386070:intron	30.0%
TGCTTATTACATGCGATATA+AGG	-	chr3_1:89828601-89828620	None:intergenic	30.0%
AGAATATGAGAAAACCATGA+AGG	+	chr3_1:89828828-89828847	Msa0386070:CDS	30.0%
TAAATGCAAATTGGGTAACT+AGG	+	chr3_1:89828894-89828913	Msa0386070:intron	30.0%
GATAAACATGTCTTACTTCT+AGG	+	chr3_1:89829235-89829254	Msa0386070:three_prime_UTR	30.0%

Showing 1 to 10 of 274 entries

Previous1 2 3 4 5…28Next

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	89827545	89829490	89827545	ID=Msa0386070;Name=Msa0386070
chr3_1	mRNA	89827545	89829490	89827545	ID=Msa0386070-mRNA-1;Parent=Msa0386070;Name=Msa0386070-mRNA-1;_AED=0.05;_eAED=0.05;_QI=215\|1\|1\|1\|0.85\|0.75\|8\|334\|155
chr3_1	exon	89827545	89827751	89827545	ID=Msa0386070-mRNA-1:exon:24606;Parent=Msa0386070-mRNA-1
chr3_1	exon	89827837	89827891	89827837	ID=Msa0386070-mRNA-1:exon:24607;Parent=Msa0386070-mRNA-1
chr3_1	exon	89828085	89828204	89828085	ID=Msa0386070-mRNA-1:exon:24608;Parent=Msa0386070-mRNA-1
chr3_1	exon	89828514	89828571	89828514	ID=Msa0386070-mRNA-1:exon:24609;Parent=Msa0386070-mRNA-1
chr3_1	exon	89828653	89828697	89828653	ID=Msa0386070-mRNA-1:exon:24610;Parent=Msa0386070-mRNA-1
chr3_1	exon	89828787	89828867	89828787	ID=Msa0386070-mRNA-1:exon:24611;Parent=Msa0386070-mRNA-1
chr3_1	exon	89828948	89829046	89828948	ID=Msa0386070-mRNA-1:exon:24612;Parent=Msa0386070-mRNA-1
chr3_1	exon	89829139	89829490	89829139	ID=Msa0386070-mRNA-1:exon:24613;Parent=Msa0386070-mRNA-1
chr3_1	five_prime_UTR	89827545	89827751	89827545	ID=Msa0386070-mRNA-1:five_prime_utr;Parent=Msa0386070-mRNA-1
chr3_1	five_prime_UTR	89827837	89827844	89827837	ID=Msa0386070-mRNA-1:five_prime_utr;Parent=Msa0386070-mRNA-1
chr3_1	CDS	89827845	89827891	89827845	ID=Msa0386070-mRNA-1:cds;Parent=Msa0386070-mRNA-1
chr3_1	CDS	89828085	89828204	89828085	ID=Msa0386070-mRNA-1:cds;Parent=Msa0386070-mRNA-1
chr3_1	CDS	89828514	89828571	89828514	ID=Msa0386070-mRNA-1:cds;Parent=Msa0386070-mRNA-1
chr3_1	CDS	89828653	89828697	89828653	ID=Msa0386070-mRNA-1:cds;Parent=Msa0386070-mRNA-1
chr3_1	CDS	89828787	89828867	89828787	ID=Msa0386070-mRNA-1:cds;Parent=Msa0386070-mRNA-1
chr3_1	CDS	89828948	89829046	89828948	ID=Msa0386070-mRNA-1:cds;Parent=Msa0386070-mRNA-1
chr3_1	CDS	89829139	89829156	89829139	ID=Msa0386070-mRNA-1:cds;Parent=Msa0386070-mRNA-1
chr3_1	three_prime_UTR	89829157	89829490	89829157	ID=Msa0386070-mRNA-1:three_prime_utr;Parent=Msa0386070-mRNA-1

Gene Sequence

>Msa0386070

ATGAAAGGAGCCAAGTCCAAGGGTGAATCCAAGAAAGCCGATGCTAAGCTTGCCGTGAATAAGAAGGGCGCCGCCACTACCAAGGGCGGAAGGAAACCAGCCAAGGGAAAGGAACCAAAGGACCCTAACAAGCCTAAGAGACCTCCAAGTGCTTTCTTCGTTTTCATGGAGGATTTTAGGAAGCAGTTCAAGAAGGACAACCCTGACAACAAAGCTGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGTCATTGTCTGTAGCTGAGAAAGCACCATATGCAGCAAAAGCAGAGAAAAGGAAGGCAGAATATGAGAAAACCATGAAGGCATATAACAAGAAACAGGCTGAAGGTCCAGCTGCTGTTGAGGAAGAAGAATCTGGGAAATCAGAATCTGAAGTGCATGATGAGAATGAGGATGATGATGAGGATGGCAGTGAAGAGGAGGAGGATGACGAATAG

Protein sequence

>Msa0386070

MKGAKSKGESKKADAKLAVNKKGAATTKGGRKPAKGKEPKDPNKPKRPPSAFFVFMEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLSVAEKAPYAAKAEKRKAEYEKTMKAYNKKQAEGPAAVEEEESGKSESEVHDENEDDDEDGSEEEEDDE*