Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386070 | XP_013462296.1 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 8.11e-99 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386070 | sp|P26585|HMGL_SOYBN | 79.508 | 122 | 22 | 2 | 1 | 121 | 1 | 120 | 6.74e-57 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386070 | I3S988 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 3.87e-99 | 291 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0386070 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0186280 | Msa0386070 | 0.918339 | 1.759783e-86 | -8.615850e-47 |
| Msa0386070 | Msa0387350 | 0.870113 | 1.864027e-66 | -8.615850e-47 |
| Msa0386070 | Msa0661680 | 0.870714 | 1.184123e-66 | -8.615850e-47 |
| Msa0386070 | Msa1173530 | 0.967963 | 5.239219e-128 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386070 | MtrunA17_Chr3g0143991 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 7.46e-103 | 291 |
| Msa0386070 | MtrunA17_Chr5g0407011 | 57.895 | 133 | 48 | 4 | 5 | 137 | 3 | 127 | 1.42e-37 | 125 |
| Msa0386070 | MtrunA17_Chr8g0370431 | 60.150 | 133 | 44 | 5 | 5 | 137 | 3 | 126 | 1.77e-37 | 125 |
| Msa0386070 | MtrunA17_Chr7g0242251 | 70.297 | 101 | 28 | 1 | 41 | 141 | 47 | 145 | 5.84e-36 | 122 |
| Msa0386070 | MtrunA17_Chr1g0212341 | 60.000 | 80 | 32 | 0 | 41 | 120 | 98 | 177 | 5.53e-27 | 100 |
| Msa0386070 | MtrunA17_Chr4g0052011 | 47.674 | 86 | 45 | 0 | 35 | 120 | 54 | 139 | 4.26e-23 | 89.0 |
| Msa0386070 | MtrunA17_Chr1g0155251 | 46.667 | 75 | 39 | 1 | 41 | 115 | 554 | 627 | 1.11e-12 | 64.7 |
| Msa0386070 | MtrunA17_Chr8g0387931 | 35.714 | 98 | 60 | 1 | 41 | 138 | 262 | 356 | 2.94e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386070 | AT1G20693.2 | 66.013 | 153 | 41 | 4 | 1 | 153 | 1 | 142 | 1.03e-53 | 167 |
| Msa0386070 | AT1G20693.3 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.52e-47 | 151 |
| Msa0386070 | AT1G20693.1 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.57e-47 | 151 |
| Msa0386070 | AT1G20696.1 | 63.504 | 137 | 38 | 3 | 1 | 137 | 1 | 125 | 8.50e-46 | 146 |
| Msa0386070 | AT2G17560.3 | 54.483 | 145 | 54 | 4 | 1 | 144 | 1 | 134 | 2.12e-41 | 135 |
| Msa0386070 | AT2G17560.2 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 5.14e-41 | 134 |
| Msa0386070 | AT2G17560.1 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 5.14e-41 | 134 |
| Msa0386070 | AT1G20696.5 | 60.800 | 125 | 39 | 2 | 1 | 125 | 1 | 115 | 8.88e-41 | 134 |
| Msa0386070 | AT1G20696.2 | 63.559 | 118 | 33 | 2 | 1 | 118 | 1 | 108 | 1.11e-40 | 134 |
| Msa0386070 | AT3G51880.2 | 65.517 | 116 | 33 | 2 | 26 | 141 | 36 | 144 | 1.55e-39 | 132 |
| Msa0386070 | AT3G51880.5 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.92e-39 | 132 |
| Msa0386070 | AT3G51880.1 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.92e-39 | 132 |
| Msa0386070 | AT3G51880.3 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.92e-39 | 132 |
| Msa0386070 | AT3G51880.4 | 69.388 | 98 | 25 | 1 | 40 | 137 | 48 | 140 | 2.50e-37 | 125 |
| Msa0386070 | AT1G20696.3 | 66.327 | 98 | 29 | 2 | 53 | 150 | 1 | 94 | 1.62e-33 | 114 |
| Msa0386070 | AT4G35570.1 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.19e-32 | 112 |
| Msa0386070 | AT4G35570.2 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.19e-32 | 112 |
| Msa0386070 | AT1G20696.4 | 64.706 | 85 | 28 | 1 | 53 | 137 | 1 | 83 | 1.86e-28 | 101 |
| Msa0386070 | AT2G34450.4 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.69e-19 | 79.3 |
| Msa0386070 | AT2G34450.3 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.69e-19 | 79.3 |
| Msa0386070 | AT2G34450.1 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.69e-19 | 79.3 |
| Msa0386070 | AT2G34450.2 | 37.000 | 100 | 47 | 2 | 45 | 143 | 63 | 147 | 6.26e-18 | 75.9 |
| Msa0386070 | AT5G23420.1 | 46.739 | 92 | 41 | 2 | 26 | 110 | 89 | 179 | 1.35e-15 | 71.6 |
| Msa0386070 | AT4G23800.1 | 45.000 | 80 | 39 | 2 | 41 | 118 | 375 | 451 | 1.03e-11 | 62.0 |
| Msa0386070 | AT4G23800.2 | 45.000 | 80 | 39 | 2 | 41 | 118 | 369 | 445 | 1.07e-11 | 62.0 |
Find 85 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGTCTCTTAGGCTTGTT+AGG | 0.179440 | 3_1:-89828161 | None:intergenic |
| ACTAAAATAGTTGGATTTAA+AGG | 0.181207 | 3_1:-89829340 | None:intergenic |
| GATAAACATGTCTTACTTCT+AGG | 0.186530 | 3_1:+89829235 | Msa0386070:three_prime_UTR |
| TTTCTTGTTATATGCCTTCA+TGG | 0.203700 | 3_1:-89828842 | None:intergenic |
| TTACTTAGCATCGGCTTTCT+TGG | 0.250421 | 3_1:-89827873 | None:intergenic |
| CTTGGATTCACCCTTGGACT+TGG | 0.277403 | 3_1:-89827855 | None:intergenic |
| CAATCCAATGGTAGGGATTT+AGG | 0.280090 | 3_1:-89827555 | None:intergenic |
| AAAGCACTTGGAGGTCTCTT+AGG | 0.309499 | 3_1:-89828170 | None:intergenic |
| TTAGGCTTGTTAGGGTCCTT+TGG | 0.339552 | 3_1:-89828152 | None:intergenic |
| TTTGGTTCCTTTCCCTTGGC+TGG | 0.339914 | 3_1:-89828134 | None:intergenic |
| GCAGACACAGCTTTGTTGTC+AGG | 0.342321 | 3_1:-89828548 | None:intergenic |
| GTAGATATTAAGCCCGTAAA+AGG | 0.346077 | 3_1:-89827611 | None:intergenic |
| GTCCTTTGGTTCCTTTCCCT+TGG | 0.359297 | 3_1:-89828138 | None:intergenic |
| GGATTTAAAGGTACAGATAA+AGG | 0.361741 | 3_1:-89829328 | None:intergenic |
| GGCTGGTTTCCTTCCGCCCT+TGG | 0.371407 | 3_1:-89828117 | None:intergenic |
| GCTGTTGAGGAAGAAGAATC+TGG | 0.372128 | 3_1:+89828963 | Msa0386070:CDS |
| TGGGGTTGGAAACTAGGGTT+TGG | 0.387960 | 3_1:-89827717 | None:intergenic |
| GGCTTTCTTGGATTCACCCT+TGG | 0.397041 | 3_1:-89827861 | None:intergenic |
| GGGGTTGGAAACTAGGGTTT+GGG | 0.405858 | 3_1:-89827716 | None:intergenic |
| GTGGAATGGGGTTGGAAACT+AGG | 0.407115 | 3_1:-89827723 | None:intergenic |
| TTGTAGGTGGGCAAAGCTGC+TGG | 0.413634 | 3_1:+89828647 | Msa0386070:intron |
| CACCTCTTAACTAAAATAGT+TGG | 0.422641 | 3_1:-89829349 | None:intergenic |
| AACGTACCGAACGGTGGAAT+GGG | 0.424680 | 3_1:-89827736 | None:intergenic |
| TTTCCTTCCGCCCTTGGTAG+TGG | 0.445999 | 3_1:-89828111 | None:intergenic |
| TCCAACCCCATTCCACCGTT+CGG | 0.447103 | 3_1:+89827730 | Msa0386070:five_prime_UTR |
| GCAAAGCTGCTGGAGCAAAA+TGG | 0.450601 | 3_1:+89828657 | Msa0386070:CDS |
| GAAGGCATATAACAAGAAAC+AGG | 0.452913 | 3_1:+89828846 | Msa0386070:CDS |
| GGGTTGGAAACTAGGGTTTG+GGG | 0.453982 | 3_1:-89827715 | None:intergenic |
| GAGGTCTCTTAGGCTTGTTA+GGG | 0.458151 | 3_1:-89828160 | None:intergenic |
| TCTTCTTCCTCAACAGCAGC+TGG | 0.462822 | 3_1:-89828957 | None:intergenic |
| GGCGGCGCCCTTCTTATTCA+CGG | 0.463220 | 3_1:-89828090 | None:intergenic |
| ATGAAAATCAATCCAATGGT+AGG | 0.463826 | 3_1:-89827563 | None:intergenic |
| CAGACACAGCTTTGTTGTCA+GGG | 0.494732 | 3_1:-89828547 | None:intergenic |
| TGGAATGGGGTTGGAAACTA+GGG | 0.504893 | 3_1:-89827722 | None:intergenic |
| CCCGCCTAAATCCCTACCAT+TGG | 0.507483 | 3_1:+89827551 | Msa0386070:five_prime_UTR |
| ATGCAGCAAAAGCAGAGAAA+AGG | 0.511362 | 3_1:+89828800 | Msa0386070:CDS |
| AAACGATGATGCGGCAGGAT+AGG | 0.515254 | 3_1:-89829450 | None:intergenic |
| GGTTGGAAACTAGGGTTTGG+GGG | 0.520276 | 3_1:-89827714 | None:intergenic |
| GATGATGATAACATTTATGT+AGG | 0.521769 | 3_1:+89829164 | Msa0386070:three_prime_UTR |
| TGAAGGTCCAGCTGCTGTTG+AGG | 0.526952 | 3_1:+89828950 | Msa0386070:CDS |
| GAAGGGCGCCGCCACTACCA+AGG | 0.539172 | 3_1:+89828100 | Msa0386070:CDS |
| AAACGTACCGAACGGTGGAA+TGG | 0.540893 | 3_1:-89827737 | None:intergenic |
| GGGCGGAAGGAAACCAGCCA+AGG | 0.544457 | 3_1:+89828121 | Msa0386070:CDS |
| TAGGCTTGCCGTGAATAAGA+AGG | 0.545546 | 3_1:+89828082 | Msa0386070:intron |
| TATGCAAACGATGATGCGGC+AGG | 0.549477 | 3_1:-89829455 | None:intergenic |
| AAGGAAACCAGCCAAGGGAA+AGG | 0.549929 | 3_1:+89828127 | Msa0386070:CDS |
| ACCGAACGGTGGAATGGGGT+TGG | 0.550575 | 3_1:-89827731 | None:intergenic |
| TGTGATTGTTGTCAGGCTGA+AGG | 0.555256 | 3_1:+89828933 | Msa0386070:intron |
| GGATTGAACTTACTTAGCAT+CGG | 0.556269 | 3_1:-89827882 | None:intergenic |
| AAAACGAAGAAAGCACTTGG+AGG | 0.558317 | 3_1:-89828179 | None:intergenic |
| AGCCAAGGGAAAGGAACCAA+AGG | 0.561691 | 3_1:+89828136 | Msa0386070:CDS |
| GAGGATGACGAATAGAAACT+TGG | 0.567255 | 3_1:+89829142 | Msa0386070:exon |
| CTGTTGAGGAAGAAGAATCT+GGG | 0.568023 | 3_1:+89828964 | Msa0386070:CDS |
| AAGGGCGCCGCCACTACCAA+GGG | 0.571773 | 3_1:+89828101 | Msa0386070:CDS |
| CCGCCACTACCAAGGGCGGA+AGG | 0.572782 | 3_1:+89828108 | Msa0386070:CDS |
| GAAAAGACAACATTTACCAA+GGG | 0.573601 | 3_1:-89829272 | None:intergenic |
| TGAAAATCAATCCAATGGTA+GGG | 0.574474 | 3_1:-89827562 | None:intergenic |
| TGAAATGAAAATCAATCCAA+TGG | 0.576914 | 3_1:-89827567 | None:intergenic |
| ACGAGAGACACACTAGGGTA+AGG | 0.580632 | 3_1:-89827645 | None:intergenic |
| TGAAAAGACAACATTTACCA+AGG | 0.587312 | 3_1:-89829273 | None:intergenic |
| ATGAAAACGAAGAAAGCACT+TGG | 0.589018 | 3_1:-89828182 | None:intergenic |
| CATGAAAGGAGCCAAGTCCA+AGG | 0.590256 | 3_1:+89827844 | Msa0386070:exon |
| AAACAGAAGGAAACAAACAT+AGG | 0.591594 | 3_1:-89829481 | None:intergenic |
| TTGTATACGAGAGACACACT+AGG | 0.596814 | 3_1:-89827651 | None:intergenic |
| CCTTCCGCCCTTGGTAGTGG+CGG | 0.599374 | 3_1:-89828108 | None:intergenic |
| TGAAGTGCATGATGAGAATG+AGG | 0.606285 | 3_1:+89828998 | Msa0386070:CDS |
| GGCGCCGCCACTACCAAGGG+CGG | 0.610298 | 3_1:+89828104 | Msa0386070:CDS |
| AGGCTTGCCGTGAATAAGAA+GGG | 0.612713 | 3_1:+89828083 | Msa0386070:intron |
| CTAGGGTAAGGATCAAATGC+GGG | 0.618398 | 3_1:-89827633 | None:intergenic |
| AGAATATGAGAAAACCATGA+AGG | 0.619628 | 3_1:+89828828 | Msa0386070:CDS |
| TGAGAATGAGGATGATGATG+AGG | 0.623282 | 3_1:+89829010 | Msa0386070:CDS |
| TGTATACGAGAGACACACTA+GGG | 0.625797 | 3_1:-89827650 | None:intergenic |
| AATGAGGATGATGATGAGGA+TGG | 0.627725 | 3_1:+89829014 | Msa0386070:CDS |
| ACGTACCGAACGGTGGAATG+GGG | 0.629092 | 3_1:-89827735 | None:intergenic |
| AGAGGAAACGTACCGAACGG+TGG | 0.632057 | 3_1:-89827742 | None:intergenic |
| ATGAAAGGAGCCAAGTCCAA+GGG | 0.636209 | 3_1:+89827845 | Msa0386070:CDS |
| GGCGGAAGGAAACCAGCCAA+GGG | 0.638094 | 3_1:+89828122 | Msa0386070:CDS |
| AGCAAAAGCAGAGAAAAGGA+AGG | 0.642820 | 3_1:+89828804 | Msa0386070:CDS |
| CCAATGGTAGGGATTTAGGC+GGG | 0.648488 | 3_1:-89827551 | None:intergenic |
| GATATATGCAAACGATGATG+CGG | 0.653333 | 3_1:-89829459 | None:intergenic |
| ACGTGAATAGCTAAAATACG+AGG | 0.663789 | 3_1:+89829298 | Msa0386070:three_prime_UTR |
| TCCAATGGTAGGGATTTAGG+CGG | 0.670919 | 3_1:-89827552 | None:intergenic |
| CGTGAATAGCTAAAATACGA+GGG | 0.671366 | 3_1:+89829299 | Msa0386070:three_prime_UTR |
| ACTAGGGTAAGGATCAAATG+CGG | 0.686246 | 3_1:-89827634 | None:intergenic |
| TGATGAGGATGGCAGTGAAG+AGG | 0.697028 | 3_1:+89829025 | Msa0386070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATTCAATTATAATAAT+TGG | - | chr3_1:89828319-89828338 | None:intergenic | 10.0% |
| !! | ATGTATTCAATTATAATAAT+TGG | - | chr3_1:89828319-89828338 | None:intergenic | 10.0% |
| !!! | TGAATTTCAATTTCCTTTTA+CGG | + | chr3_1:89827598-89827617 | Msa0386070:five_prime_UTR | 20.0% |
| !! | AAGAGGAAATTATGAAAAAA+CGG | - | chr3_1:89827906-89827925 | None:intergenic | 20.0% |
| !!! | ATTGATATTGTTGATTTTGA+TGG | + | chr3_1:89828059-89828078 | Msa0386070:intron | 20.0% |
| !!! | TTTTTATTCTGAAATTTGTG+TGG | + | chr3_1:89828482-89828501 | Msa0386070:intron | 20.0% |
| !! | GTATGTACTGTTATATTTAT+TGG | + | chr3_1:89828698-89828717 | Msa0386070:intron | 20.0% |
| !! | ACTAAAATAGTTGGATTTAA+AGG | - | chr3_1:89829343-89829362 | None:intergenic | 20.0% |
| !!! | TGAATTTCAATTTCCTTTTA+CGG | + | chr3_1:89827598-89827617 | Msa0386070:five_prime_UTR | 20.0% |
| !! | AAGAGGAAATTATGAAAAAA+CGG | - | chr3_1:89827906-89827925 | None:intergenic | 20.0% |
| !!! | ATTGATATTGTTGATTTTGA+TGG | + | chr3_1:89828059-89828078 | Msa0386070:intron | 20.0% |
| !!! | TTTTTATTCTGAAATTTGTG+TGG | + | chr3_1:89828482-89828501 | Msa0386070:intron | 20.0% |
| !! | GTATGTACTGTTATATTTAT+TGG | + | chr3_1:89828698-89828717 | Msa0386070:intron | 20.0% |
| !! | ACTAAAATAGTTGGATTTAA+AGG | - | chr3_1:89829343-89829362 | None:intergenic | 20.0% |
| ! | TGAAATGAAAATCAATCCAA+TGG | - | chr3_1:89827570-89827589 | None:intergenic | 25.0% |
| !! | GAATTTCAATTTCCTTTTAC+GGG | + | chr3_1:89827599-89827618 | Msa0386070:five_prime_UTR | 25.0% |
| ! | GCAAAAAATCGAGTAAATTA+GGG | + | chr3_1:89827952-89827971 | Msa0386070:intron | 25.0% |
| !! | AACTAGCATAATTTCTCTTT+TGG | + | chr3_1:89828013-89828032 | Msa0386070:intron | 25.0% |
| !!! | ATATTGTTGATTTTGATGGT+AGG | + | chr3_1:89828063-89828082 | Msa0386070:intron | 25.0% |
| ! | AAATTTGTGTGGTCTTTATA+GGG | + | chr3_1:89828493-89828512 | Msa0386070:intron | 25.0% |
| !! | CATCTGTATATGAATTTTGT+AGG | + | chr3_1:89828631-89828650 | Msa0386070:intron | 25.0% |
| !! | TGTATATGAATTTTGTAGGT+GGG | + | chr3_1:89828635-89828654 | Msa0386070:intron | 25.0% |
| ! | TGTTGTAAGTAAATGCAAAT+TGG | + | chr3_1:89828885-89828904 | Msa0386070:intron | 25.0% |
| ! | GTTGTAAGTAAATGCAAATT+GGG | + | chr3_1:89828886-89828905 | Msa0386070:intron | 25.0% |
| ! | ATTTATTTGTGATTGTTGTC+AGG | + | chr3_1:89828926-89828945 | Msa0386070:intron | 25.0% |
| ! | TTTGTTGAATTTCACTTTGT+AGG | + | chr3_1:89829068-89829087 | Msa0386070:intron | 25.0% |
| ! | GATGATGATAACATTTATGT+AGG | + | chr3_1:89829164-89829183 | Msa0386070:three_prime_UTR | 25.0% |
| !!! | ATCCAACTATTTTAGTTAAG+AGG | + | chr3_1:89829347-89829366 | Msa0386070:three_prime_UTR | 25.0% |
| ! | TGAAATGAAAATCAATCCAA+TGG | - | chr3_1:89827570-89827589 | None:intergenic | 25.0% |
| !! | GAATTTCAATTTCCTTTTAC+GGG | + | chr3_1:89827599-89827618 | Msa0386070:five_prime_UTR | 25.0% |
| ! | GCAAAAAATCGAGTAAATTA+GGG | + | chr3_1:89827952-89827971 | Msa0386070:intron | 25.0% |
| !! | AACTAGCATAATTTCTCTTT+TGG | + | chr3_1:89828013-89828032 | Msa0386070:intron | 25.0% |
| !!! | ATATTGTTGATTTTGATGGT+AGG | + | chr3_1:89828063-89828082 | Msa0386070:intron | 25.0% |
| ! | AAATTTGTGTGGTCTTTATA+GGG | + | chr3_1:89828493-89828512 | Msa0386070:intron | 25.0% |
| !! | CATCTGTATATGAATTTTGT+AGG | + | chr3_1:89828631-89828650 | Msa0386070:intron | 25.0% |
| !! | TGTATATGAATTTTGTAGGT+GGG | + | chr3_1:89828635-89828654 | Msa0386070:intron | 25.0% |
| ! | TGTTGTAAGTAAATGCAAAT+TGG | + | chr3_1:89828885-89828904 | Msa0386070:intron | 25.0% |
| ! | GTTGTAAGTAAATGCAAATT+GGG | + | chr3_1:89828886-89828905 | Msa0386070:intron | 25.0% |
| ! | ATTTATTTGTGATTGTTGTC+AGG | + | chr3_1:89828926-89828945 | Msa0386070:intron | 25.0% |
| ! | TTTGTTGAATTTCACTTTGT+AGG | + | chr3_1:89829068-89829087 | Msa0386070:intron | 25.0% |
| ! | GATGATGATAACATTTATGT+AGG | + | chr3_1:89829164-89829183 | Msa0386070:three_prime_UTR | 25.0% |
| !!! | ATCCAACTATTTTAGTTAAG+AGG | + | chr3_1:89829347-89829366 | Msa0386070:three_prime_UTR | 25.0% |
| TGAAAATCAATCCAATGGTA+GGG | - | chr3_1:89827565-89827584 | None:intergenic | 30.0% | |
| ATGAAAATCAATCCAATGGT+AGG | - | chr3_1:89827566-89827585 | None:intergenic | 30.0% | |
| AGCGAATAAAACGATTTAAG+AGG | - | chr3_1:89827923-89827942 | None:intergenic | 30.0% | |
| GGCAAAAAATCGAGTAAATT+AGG | + | chr3_1:89827951-89827970 | Msa0386070:intron | 30.0% | |
| ATAAAAATGTCAAAGTCCCA+TGG | - | chr3_1:89828446-89828465 | None:intergenic | 30.0% | |
| GAAATTTGTGTGGTCTTTAT+AGG | + | chr3_1:89828492-89828511 | Msa0386070:intron | 30.0% | |
| TGCTTATTACATGCGATATA+AGG | - | chr3_1:89828601-89828620 | None:intergenic | 30.0% | |
| ! | CTGTATATGAATTTTGTAGG+TGG | + | chr3_1:89828634-89828653 | Msa0386070:intron | 30.0% |
| AGAATATGAGAAAACCATGA+AGG | + | chr3_1:89828828-89828847 | Msa0386070:CDS | 30.0% | |
| ! | TTTCTTGTTATATGCCTTCA+TGG | - | chr3_1:89828845-89828864 | None:intergenic | 30.0% |
| TAAATGCAAATTGGGTAACT+AGG | + | chr3_1:89828894-89828913 | Msa0386070:intron | 30.0% | |
| GATAAACATGTCTTACTTCT+AGG | + | chr3_1:89829235-89829254 | Msa0386070:three_prime_UTR | 30.0% | |
| GAAAAGACAACATTTACCAA+GGG | - | chr3_1:89829275-89829294 | None:intergenic | 30.0% | |
| TGAAAAGACAACATTTACCA+AGG | - | chr3_1:89829276-89829295 | None:intergenic | 30.0% | |
| ! | GGATTTAAAGGTACAGATAA+AGG | - | chr3_1:89829331-89829350 | None:intergenic | 30.0% |
| CACCTCTTAACTAAAATAGT+TGG | - | chr3_1:89829352-89829371 | None:intergenic | 30.0% | |
| TGAAAATCAATCCAATGGTA+GGG | - | chr3_1:89827565-89827584 | None:intergenic | 30.0% | |
| ATGAAAATCAATCCAATGGT+AGG | - | chr3_1:89827566-89827585 | None:intergenic | 30.0% | |
| AGCGAATAAAACGATTTAAG+AGG | - | chr3_1:89827923-89827942 | None:intergenic | 30.0% | |
| GGCAAAAAATCGAGTAAATT+AGG | + | chr3_1:89827951-89827970 | Msa0386070:intron | 30.0% | |
| ATAAAAATGTCAAAGTCCCA+TGG | - | chr3_1:89828446-89828465 | None:intergenic | 30.0% | |
| GAAATTTGTGTGGTCTTTAT+AGG | + | chr3_1:89828492-89828511 | Msa0386070:intron | 30.0% | |
| TGCTTATTACATGCGATATA+AGG | - | chr3_1:89828601-89828620 | None:intergenic | 30.0% | |
| ! | CTGTATATGAATTTTGTAGG+TGG | + | chr3_1:89828634-89828653 | Msa0386070:intron | 30.0% |
| AGAATATGAGAAAACCATGA+AGG | + | chr3_1:89828828-89828847 | Msa0386070:CDS | 30.0% | |
| ! | TTTCTTGTTATATGCCTTCA+TGG | - | chr3_1:89828845-89828864 | None:intergenic | 30.0% |
| TAAATGCAAATTGGGTAACT+AGG | + | chr3_1:89828894-89828913 | Msa0386070:intron | 30.0% | |
| GATAAACATGTCTTACTTCT+AGG | + | chr3_1:89829235-89829254 | Msa0386070:three_prime_UTR | 30.0% | |
| GAAAAGACAACATTTACCAA+GGG | - | chr3_1:89829275-89829294 | None:intergenic | 30.0% | |
| TGAAAAGACAACATTTACCA+AGG | - | chr3_1:89829276-89829295 | None:intergenic | 30.0% | |
| ! | GGATTTAAAGGTACAGATAA+AGG | - | chr3_1:89829331-89829350 | None:intergenic | 30.0% |
| CACCTCTTAACTAAAATAGT+TGG | - | chr3_1:89829352-89829371 | None:intergenic | 30.0% | |
| GTAGATATTAAGCCCGTAAA+AGG | - | chr3_1:89827614-89827633 | None:intergenic | 35.0% | |
| GAAAATTGAGCGAAATTGAG+AGG | - | chr3_1:89827763-89827782 | None:intergenic | 35.0% | |
| ! | ACTGCAGTTTTCATCATGAA+AGG | + | chr3_1:89827830-89827849 | Msa0386070:intron | 35.0% |
| GGATTGAACTTACTTAGCAT+CGG | - | chr3_1:89827885-89827904 | None:intergenic | 35.0% | |
| !! | CGTTTTATTCGCTTTCGATT+TGG | + | chr3_1:89827930-89827949 | Msa0386070:intron | 35.0% |
| !! | ATGAAAACGAAGAAAGCACT+TGG | - | chr3_1:89828185-89828204 | None:intergenic | 35.0% |
| ! | CAGTCATAACTGTTTTCACA+CGG | - | chr3_1:89828409-89828428 | None:intergenic | 35.0% |
| ! | GTCTTTATAGGGAGGATTTT+AGG | + | chr3_1:89828504-89828523 | Msa0386070:intron | 35.0% |
| !! | TTTTAGGAAGCAGTTCAAGA+AGG | + | chr3_1:89828520-89828539 | Msa0386070:CDS | 35.0% |
| !!! | AGTATCCGTTGTTGTTTTAC+TGG | + | chr3_1:89828575-89828594 | Msa0386070:intron | 35.0% |
| TAAGGCCAGTAAAACAACAA+CGG | - | chr3_1:89828583-89828602 | None:intergenic | 35.0% | |
| CGTTCAATCACAGCATATAA+TGG | - | chr3_1:89828746-89828765 | None:intergenic | 35.0% | |
| ATATGCTGTGATTGAACGTT+TGG | + | chr3_1:89828748-89828767 | Msa0386070:intron | 35.0% | |
| GTTTGGTCTCTGGATTTATT+AGG | + | chr3_1:89828765-89828784 | Msa0386070:intron | 35.0% | |
| ! | GAAGGCATATAACAAGAAAC+AGG | + | chr3_1:89828846-89828865 | Msa0386070:CDS | 35.0% |
| GCATATAACAAGAAACAGGT+CGG | + | chr3_1:89828850-89828869 | Msa0386070:intron | 35.0% | |
| TTGTTCCTTATGTTTCATGC+AGG | + | chr3_1:89829117-89829136 | Msa0386070:intron | 35.0% | |
| ACGTGAATAGCTAAAATACG+AGG | + | chr3_1:89829298-89829317 | Msa0386070:three_prime_UTR | 35.0% | |
| CGTGAATAGCTAAAATACGA+GGG | + | chr3_1:89829299-89829318 | Msa0386070:three_prime_UTR | 35.0% | |
| !!! | AGAGCTTTTAGTTTCTCTTG+TGG | + | chr3_1:89829384-89829403 | Msa0386070:three_prime_UTR | 35.0% |
| GATATATGCAAACGATGATG+CGG | - | chr3_1:89829462-89829481 | None:intergenic | 35.0% | |
| GTAGATATTAAGCCCGTAAA+AGG | - | chr3_1:89827614-89827633 | None:intergenic | 35.0% | |
| GAAAATTGAGCGAAATTGAG+AGG | - | chr3_1:89827763-89827782 | None:intergenic | 35.0% | |
| ! | ACTGCAGTTTTCATCATGAA+AGG | + | chr3_1:89827830-89827849 | Msa0386070:intron | 35.0% |
| GGATTGAACTTACTTAGCAT+CGG | - | chr3_1:89827885-89827904 | None:intergenic | 35.0% | |
| !! | CGTTTTATTCGCTTTCGATT+TGG | + | chr3_1:89827930-89827949 | Msa0386070:intron | 35.0% |
| !! | ATGAAAACGAAGAAAGCACT+TGG | - | chr3_1:89828185-89828204 | None:intergenic | 35.0% |
| ! | CAGTCATAACTGTTTTCACA+CGG | - | chr3_1:89828409-89828428 | None:intergenic | 35.0% |
| ! | GTCTTTATAGGGAGGATTTT+AGG | + | chr3_1:89828504-89828523 | Msa0386070:intron | 35.0% |
| !! | TTTTAGGAAGCAGTTCAAGA+AGG | + | chr3_1:89828520-89828539 | Msa0386070:CDS | 35.0% |
| !!! | AGTATCCGTTGTTGTTTTAC+TGG | + | chr3_1:89828575-89828594 | Msa0386070:intron | 35.0% |
| TAAGGCCAGTAAAACAACAA+CGG | - | chr3_1:89828583-89828602 | None:intergenic | 35.0% | |
| CGTTCAATCACAGCATATAA+TGG | - | chr3_1:89828746-89828765 | None:intergenic | 35.0% | |
| ATATGCTGTGATTGAACGTT+TGG | + | chr3_1:89828748-89828767 | Msa0386070:intron | 35.0% | |
| GTTTGGTCTCTGGATTTATT+AGG | + | chr3_1:89828765-89828784 | Msa0386070:intron | 35.0% | |
| ! | GAAGGCATATAACAAGAAAC+AGG | + | chr3_1:89828846-89828865 | Msa0386070:CDS | 35.0% |
| GCATATAACAAGAAACAGGT+CGG | + | chr3_1:89828850-89828869 | Msa0386070:intron | 35.0% | |
| TTGTTCCTTATGTTTCATGC+AGG | + | chr3_1:89829117-89829136 | Msa0386070:intron | 35.0% | |
| ACGTGAATAGCTAAAATACG+AGG | + | chr3_1:89829298-89829317 | Msa0386070:three_prime_UTR | 35.0% | |
| CGTGAATAGCTAAAATACGA+GGG | + | chr3_1:89829299-89829318 | Msa0386070:three_prime_UTR | 35.0% | |
| !!! | AGAGCTTTTAGTTTCTCTTG+TGG | + | chr3_1:89829384-89829403 | Msa0386070:three_prime_UTR | 35.0% |
| GATATATGCAAACGATGATG+CGG | - | chr3_1:89829462-89829481 | None:intergenic | 35.0% | |
| CAATCCAATGGTAGGGATTT+AGG | - | chr3_1:89827558-89827577 | None:intergenic | 40.0% | |
| ACTAGGGTAAGGATCAAATG+CGG | - | chr3_1:89827637-89827656 | None:intergenic | 40.0% | |
| TGTATACGAGAGACACACTA+GGG | - | chr3_1:89827653-89827672 | None:intergenic | 40.0% | |
| TTGTATACGAGAGACACACT+AGG | - | chr3_1:89827654-89827673 | None:intergenic | 40.0% | |
| TATGAGAGAGAGAGAGTTTG+TGG | - | chr3_1:89827687-89827706 | None:intergenic | 40.0% | |
| !!! | GCGTTAGTTTTTACAGCGAA+AGG | - | chr3_1:89827801-89827820 | None:intergenic | 40.0% |
| !! | TTACTTAGCATCGGCTTTCT+TGG | - | chr3_1:89827876-89827895 | None:intergenic | 40.0% |
| ! | CGATTTTCAGATCTCAGATC+TGG | - | chr3_1:89827989-89828008 | None:intergenic | 40.0% |
| !! | AAAACGAAGAAAGCACTTGG+AGG | - | chr3_1:89828182-89828201 | None:intergenic | 40.0% |
| ! | GTTTTCACACGGTATAAGAC+AGG | - | chr3_1:89828398-89828417 | None:intergenic | 40.0% |
| TGCTGAGTTATGATGACCAT+GGG | + | chr3_1:89828427-89828446 | Msa0386070:intron | 40.0% | |
| TTTGTGTGGTCTTTATAGGG+AGG | + | chr3_1:89828496-89828515 | Msa0386070:intron | 40.0% | |
| !! | TTCTCTGCTTTTGCTGCATA+TGG | - | chr3_1:89828799-89828818 | None:intergenic | 40.0% |
| ATGCAGCAAAAGCAGAGAAA+AGG | + | chr3_1:89828800-89828819 | Msa0386070:CDS | 40.0% | |
| AGCAAAAGCAGAGAAAAGGA+AGG | + | chr3_1:89828804-89828823 | Msa0386070:CDS | 40.0% | |
| CTGTTGAGGAAGAAGAATCT+GGG | + | chr3_1:89828964-89828983 | Msa0386070:CDS | 40.0% | |
| TGAAGTGCATGATGAGAATG+AGG | + | chr3_1:89828998-89829017 | Msa0386070:CDS | 40.0% | |
| ! | TGAGAATGAGGATGATGATG+AGG | + | chr3_1:89829010-89829029 | Msa0386070:CDS | 40.0% |
| ! | AATGAGGATGATGATGAGGA+TGG | + | chr3_1:89829014-89829033 | Msa0386070:CDS | 40.0% |
| TTCCTTATGTTTCATGCAGG+AGG | + | chr3_1:89829120-89829139 | Msa0386070:intron | 40.0% | |
| GAGGATGACGAATAGAAACT+TGG | + | chr3_1:89829142-89829161 | Msa0386070:exon | 40.0% | |
| CAATCCAATGGTAGGGATTT+AGG | - | chr3_1:89827558-89827577 | None:intergenic | 40.0% | |
| ACTAGGGTAAGGATCAAATG+CGG | - | chr3_1:89827637-89827656 | None:intergenic | 40.0% | |
| TGTATACGAGAGACACACTA+GGG | - | chr3_1:89827653-89827672 | None:intergenic | 40.0% | |
| TTGTATACGAGAGACACACT+AGG | - | chr3_1:89827654-89827673 | None:intergenic | 40.0% | |
| TATGAGAGAGAGAGAGTTTG+TGG | - | chr3_1:89827687-89827706 | None:intergenic | 40.0% | |
| !!! | GCGTTAGTTTTTACAGCGAA+AGG | - | chr3_1:89827801-89827820 | None:intergenic | 40.0% |
| !! | TTACTTAGCATCGGCTTTCT+TGG | - | chr3_1:89827876-89827895 | None:intergenic | 40.0% |
| ! | CGATTTTCAGATCTCAGATC+TGG | - | chr3_1:89827989-89828008 | None:intergenic | 40.0% |
| !! | AAAACGAAGAAAGCACTTGG+AGG | - | chr3_1:89828182-89828201 | None:intergenic | 40.0% |
| ! | GTTTTCACACGGTATAAGAC+AGG | - | chr3_1:89828398-89828417 | None:intergenic | 40.0% |
| TGCTGAGTTATGATGACCAT+GGG | + | chr3_1:89828427-89828446 | Msa0386070:intron | 40.0% | |
| TTTGTGTGGTCTTTATAGGG+AGG | + | chr3_1:89828496-89828515 | Msa0386070:intron | 40.0% | |
| !! | TTCTCTGCTTTTGCTGCATA+TGG | - | chr3_1:89828799-89828818 | None:intergenic | 40.0% |
| ATGCAGCAAAAGCAGAGAAA+AGG | + | chr3_1:89828800-89828819 | Msa0386070:CDS | 40.0% | |
| AGCAAAAGCAGAGAAAAGGA+AGG | + | chr3_1:89828804-89828823 | Msa0386070:CDS | 40.0% | |
| CTGTTGAGGAAGAAGAATCT+GGG | + | chr3_1:89828964-89828983 | Msa0386070:CDS | 40.0% | |
| TGAAGTGCATGATGAGAATG+AGG | + | chr3_1:89828998-89829017 | Msa0386070:CDS | 40.0% | |
| ! | TGAGAATGAGGATGATGATG+AGG | + | chr3_1:89829010-89829029 | Msa0386070:CDS | 40.0% |
| ! | AATGAGGATGATGATGAGGA+TGG | + | chr3_1:89829014-89829033 | Msa0386070:CDS | 40.0% |
| TTCCTTATGTTTCATGCAGG+AGG | + | chr3_1:89829120-89829139 | Msa0386070:intron | 40.0% | |
| GAGGATGACGAATAGAAACT+TGG | + | chr3_1:89829142-89829161 | Msa0386070:exon | 40.0% | |
| TCCAATGGTAGGGATTTAGG+CGG | - | chr3_1:89827555-89827574 | None:intergenic | 45.0% | |
| CTAGGGTAAGGATCAAATGC+GGG | - | chr3_1:89827636-89827655 | None:intergenic | 45.0% | |
| TGGAATGGGGTTGGAAACTA+GGG | - | chr3_1:89827725-89827744 | None:intergenic | 45.0% | |
| TTGAGAGGAAACGTACCGAA+CGG | - | chr3_1:89827748-89827767 | None:intergenic | 45.0% | |
| ATGAAAGGAGCCAAGTCCAA+GGG | + | chr3_1:89827845-89827864 | Msa0386070:CDS | 45.0% | |
| TAGGCTTGCCGTGAATAAGA+AGG | + | chr3_1:89828082-89828101 | Msa0386070:intron | 45.0% | |
| AGGCTTGCCGTGAATAAGAA+GGG | + | chr3_1:89828083-89828102 | Msa0386070:intron | 45.0% | |
| !! | TTAGGCTTGTTAGGGTCCTT+TGG | - | chr3_1:89828155-89828174 | None:intergenic | 45.0% |
| !! | GAGGTCTCTTAGGCTTGTTA+GGG | - | chr3_1:89828163-89828182 | None:intergenic | 45.0% |
| ! | AAAGCACTTGGAGGTCTCTT+AGG | - | chr3_1:89828173-89828192 | None:intergenic | 45.0% |
| CTGCTGAGTTATGATGACCA+TGG | + | chr3_1:89828426-89828445 | Msa0386070:intron | 45.0% | |
| !! | CAGACACAGCTTTGTTGTCA+GGG | - | chr3_1:89828550-89828569 | None:intergenic | 45.0% |
| GTGATTGAACGTTTGGTCTC+TGG | + | chr3_1:89828755-89828774 | Msa0386070:intron | 45.0% | |
| TGTGATTGTTGTCAGGCTGA+AGG | + | chr3_1:89828933-89828952 | Msa0386070:intron | 45.0% | |
| GCTGTTGAGGAAGAAGAATC+TGG | + | chr3_1:89828963-89828982 | Msa0386070:CDS | 45.0% | |
| CTCCTCCTGCATGAAACATA+AGG | - | chr3_1:89829125-89829144 | None:intergenic | 45.0% | |
| CTTATGTTTCATGCAGGAGG+AGG | + | chr3_1:89829123-89829142 | Msa0386070:intron | 45.0% | |
| ! | GGAATATTTTGCTGCTCCCT+TGG | + | chr3_1:89829256-89829275 | Msa0386070:three_prime_UTR | 45.0% |
| TCCAATGGTAGGGATTTAGG+CGG | - | chr3_1:89827555-89827574 | None:intergenic | 45.0% | |
| CTAGGGTAAGGATCAAATGC+GGG | - | chr3_1:89827636-89827655 | None:intergenic | 45.0% | |
| TGGAATGGGGTTGGAAACTA+GGG | - | chr3_1:89827725-89827744 | None:intergenic | 45.0% | |
| TTGAGAGGAAACGTACCGAA+CGG | - | chr3_1:89827748-89827767 | None:intergenic | 45.0% | |
| ATGAAAGGAGCCAAGTCCAA+GGG | + | chr3_1:89827845-89827864 | Msa0386070:CDS | 45.0% | |
| TAGGCTTGCCGTGAATAAGA+AGG | + | chr3_1:89828082-89828101 | Msa0386070:intron | 45.0% | |
| AGGCTTGCCGTGAATAAGAA+GGG | + | chr3_1:89828083-89828102 | Msa0386070:intron | 45.0% | |
| !! | TTAGGCTTGTTAGGGTCCTT+TGG | - | chr3_1:89828155-89828174 | None:intergenic | 45.0% |
| !! | GAGGTCTCTTAGGCTTGTTA+GGG | - | chr3_1:89828163-89828182 | None:intergenic | 45.0% |
| ! | AAAGCACTTGGAGGTCTCTT+AGG | - | chr3_1:89828173-89828192 | None:intergenic | 45.0% |
| CTGCTGAGTTATGATGACCA+TGG | + | chr3_1:89828426-89828445 | Msa0386070:intron | 45.0% | |
| !! | CAGACACAGCTTTGTTGTCA+GGG | - | chr3_1:89828550-89828569 | None:intergenic | 45.0% |
| GTGATTGAACGTTTGGTCTC+TGG | + | chr3_1:89828755-89828774 | Msa0386070:intron | 45.0% | |
| TGTGATTGTTGTCAGGCTGA+AGG | + | chr3_1:89828933-89828952 | Msa0386070:intron | 45.0% | |
| GCTGTTGAGGAAGAAGAATC+TGG | + | chr3_1:89828963-89828982 | Msa0386070:CDS | 45.0% | |
| CTCCTCCTGCATGAAACATA+AGG | - | chr3_1:89829125-89829144 | None:intergenic | 45.0% | |
| CTTATGTTTCATGCAGGAGG+AGG | + | chr3_1:89829123-89829142 | Msa0386070:intron | 45.0% | |
| ! | GGAATATTTTGCTGCTCCCT+TGG | + | chr3_1:89829256-89829275 | Msa0386070:three_prime_UTR | 45.0% |
| CCAATGGTAGGGATTTAGGC+GGG | - | chr3_1:89827554-89827573 | None:intergenic | 50.0% | |
| ACGAGAGACACACTAGGGTA+AGG | - | chr3_1:89827648-89827667 | None:intergenic | 50.0% | |
| GGTTGGAAACTAGGGTTTGG+GGG | - | chr3_1:89827717-89827736 | None:intergenic | 50.0% | |
| GGGTTGGAAACTAGGGTTTG+GGG | - | chr3_1:89827718-89827737 | None:intergenic | 50.0% | |
| GGGGTTGGAAACTAGGGTTT+GGG | - | chr3_1:89827719-89827738 | None:intergenic | 50.0% | |
| TGGGGTTGGAAACTAGGGTT+TGG | - | chr3_1:89827720-89827739 | None:intergenic | 50.0% | |
| GTGGAATGGGGTTGGAAACT+AGG | - | chr3_1:89827726-89827745 | None:intergenic | 50.0% | |
| AACGTACCGAACGGTGGAAT+GGG | - | chr3_1:89827739-89827758 | None:intergenic | 50.0% | |
| AAACGTACCGAACGGTGGAA+TGG | - | chr3_1:89827740-89827759 | None:intergenic | 50.0% | |
| CATGAAAGGAGCCAAGTCCA+AGG | + | chr3_1:89827844-89827863 | Msa0386070:exon | 50.0% | |
| CTTGGATTCACCCTTGGACT+TGG | - | chr3_1:89827858-89827877 | None:intergenic | 50.0% | |
| GGCTTTCTTGGATTCACCCT+TGG | - | chr3_1:89827864-89827883 | None:intergenic | 50.0% | |
| AAGGAAACCAGCCAAGGGAA+AGG | + | chr3_1:89828127-89828146 | Msa0386070:CDS | 50.0% | |
| ! | TTTGGTTCCTTTCCCTTGGC+TGG | - | chr3_1:89828137-89828156 | None:intergenic | 50.0% |
| AGCCAAGGGAAAGGAACCAA+AGG | + | chr3_1:89828136-89828155 | Msa0386070:CDS | 50.0% | |
| ! | GTCCTTTGGTTCCTTTCCCT+TGG | - | chr3_1:89828141-89828160 | None:intergenic | 50.0% |
| ! | GGAGGTCTCTTAGGCTTGTT+AGG | - | chr3_1:89828164-89828183 | None:intergenic | 50.0% |
| !! | GCAGACACAGCTTTGTTGTC+AGG | - | chr3_1:89828551-89828570 | None:intergenic | 50.0% |
| GCAAAGCTGCTGGAGCAAAA+TGG | + | chr3_1:89828657-89828676 | Msa0386070:CDS | 50.0% | |
| TCTTCTTCCTCAACAGCAGC+TGG | - | chr3_1:89828960-89828979 | None:intergenic | 50.0% | |
| TGATGAGGATGGCAGTGAAG+AGG | + | chr3_1:89829025-89829044 | Msa0386070:CDS | 50.0% | |
| AAACGATGATGCGGCAGGAT+AGG | - | chr3_1:89829453-89829472 | None:intergenic | 50.0% | |
| TATGCAAACGATGATGCGGC+AGG | - | chr3_1:89829458-89829477 | None:intergenic | 50.0% | |
| CCAATGGTAGGGATTTAGGC+GGG | - | chr3_1:89827554-89827573 | None:intergenic | 50.0% | |
| ACGAGAGACACACTAGGGTA+AGG | - | chr3_1:89827648-89827667 | None:intergenic | 50.0% | |
| GGTTGGAAACTAGGGTTTGG+GGG | - | chr3_1:89827717-89827736 | None:intergenic | 50.0% | |
| GGGTTGGAAACTAGGGTTTG+GGG | - | chr3_1:89827718-89827737 | None:intergenic | 50.0% | |
| GGGGTTGGAAACTAGGGTTT+GGG | - | chr3_1:89827719-89827738 | None:intergenic | 50.0% | |
| TGGGGTTGGAAACTAGGGTT+TGG | - | chr3_1:89827720-89827739 | None:intergenic | 50.0% | |
| GTGGAATGGGGTTGGAAACT+AGG | - | chr3_1:89827726-89827745 | None:intergenic | 50.0% | |
| AACGTACCGAACGGTGGAAT+GGG | - | chr3_1:89827739-89827758 | None:intergenic | 50.0% | |
| AAACGTACCGAACGGTGGAA+TGG | - | chr3_1:89827740-89827759 | None:intergenic | 50.0% | |
| CATGAAAGGAGCCAAGTCCA+AGG | + | chr3_1:89827844-89827863 | Msa0386070:exon | 50.0% | |
| CTTGGATTCACCCTTGGACT+TGG | - | chr3_1:89827858-89827877 | None:intergenic | 50.0% | |
| GGCTTTCTTGGATTCACCCT+TGG | - | chr3_1:89827864-89827883 | None:intergenic | 50.0% | |
| AAGGAAACCAGCCAAGGGAA+AGG | + | chr3_1:89828127-89828146 | Msa0386070:CDS | 50.0% | |
| ! | TTTGGTTCCTTTCCCTTGGC+TGG | - | chr3_1:89828137-89828156 | None:intergenic | 50.0% |
| AGCCAAGGGAAAGGAACCAA+AGG | + | chr3_1:89828136-89828155 | Msa0386070:CDS | 50.0% | |
| ! | GTCCTTTGGTTCCTTTCCCT+TGG | - | chr3_1:89828141-89828160 | None:intergenic | 50.0% |
| ! | GGAGGTCTCTTAGGCTTGTT+AGG | - | chr3_1:89828164-89828183 | None:intergenic | 50.0% |
| !! | GCAGACACAGCTTTGTTGTC+AGG | - | chr3_1:89828551-89828570 | None:intergenic | 50.0% |
| GCAAAGCTGCTGGAGCAAAA+TGG | + | chr3_1:89828657-89828676 | Msa0386070:CDS | 50.0% | |
| TCTTCTTCCTCAACAGCAGC+TGG | - | chr3_1:89828960-89828979 | None:intergenic | 50.0% | |
| TGATGAGGATGGCAGTGAAG+AGG | + | chr3_1:89829025-89829044 | Msa0386070:CDS | 50.0% | |
| AAACGATGATGCGGCAGGAT+AGG | - | chr3_1:89829453-89829472 | None:intergenic | 50.0% | |
| TATGCAAACGATGATGCGGC+AGG | - | chr3_1:89829458-89829477 | None:intergenic | 50.0% | |
| CCCGCCTAAATCCCTACCAT+TGG | + | chr3_1:89827551-89827570 | Msa0386070:five_prime_UTR | 55.0% | |
| TCCAACCCCATTCCACCGTT+CGG | + | chr3_1:89827730-89827749 | Msa0386070:five_prime_UTR | 55.0% | |
| ACGTACCGAACGGTGGAATG+GGG | - | chr3_1:89827738-89827757 | None:intergenic | 55.0% | |
| AGAGGAAACGTACCGAACGG+TGG | - | chr3_1:89827745-89827764 | None:intergenic | 55.0% | |
| TTTCCTTCCGCCCTTGGTAG+TGG | - | chr3_1:89828114-89828133 | None:intergenic | 55.0% | |
| TTGTAGGTGGGCAAAGCTGC+TGG | + | chr3_1:89828647-89828666 | Msa0386070:intron | 55.0% | |
| TGAAGGTCCAGCTGCTGTTG+AGG | + | chr3_1:89828950-89828969 | Msa0386070:CDS | 55.0% | |
| CCCGCCTAAATCCCTACCAT+TGG | + | chr3_1:89827551-89827570 | Msa0386070:five_prime_UTR | 55.0% | |
| TCCAACCCCATTCCACCGTT+CGG | + | chr3_1:89827730-89827749 | Msa0386070:five_prime_UTR | 55.0% | |
| ACGTACCGAACGGTGGAATG+GGG | - | chr3_1:89827738-89827757 | None:intergenic | 55.0% | |
| AGAGGAAACGTACCGAACGG+TGG | - | chr3_1:89827745-89827764 | None:intergenic | 55.0% | |
| TTTCCTTCCGCCCTTGGTAG+TGG | - | chr3_1:89828114-89828133 | None:intergenic | 55.0% | |
| TTGTAGGTGGGCAAAGCTGC+TGG | + | chr3_1:89828647-89828666 | Msa0386070:intron | 55.0% | |
| TGAAGGTCCAGCTGCTGTTG+AGG | + | chr3_1:89828950-89828969 | Msa0386070:CDS | 55.0% | |
| ACCGAACGGTGGAATGGGGT+TGG | - | chr3_1:89827734-89827753 | None:intergenic | 60.0% | |
| GGCGGCGCCCTTCTTATTCA+CGG | - | chr3_1:89828093-89828112 | None:intergenic | 60.0% | |
| GGCGGAAGGAAACCAGCCAA+GGG | + | chr3_1:89828122-89828141 | Msa0386070:CDS | 60.0% | |
| ACCGAACGGTGGAATGGGGT+TGG | - | chr3_1:89827734-89827753 | None:intergenic | 60.0% | |
| GGCGGCGCCCTTCTTATTCA+CGG | - | chr3_1:89828093-89828112 | None:intergenic | 60.0% | |
| GGCGGAAGGAAACCAGCCAA+GGG | + | chr3_1:89828122-89828141 | Msa0386070:CDS | 60.0% | |
| !! | AAGGGCGCCGCCACTACCAA+GGG | + | chr3_1:89828101-89828120 | Msa0386070:CDS | 65.0% |
| !! | CCTTCCGCCCTTGGTAGTGG+CGG | - | chr3_1:89828111-89828130 | None:intergenic | 65.0% |
| !! | GGCTGGTTTCCTTCCGCCCT+TGG | - | chr3_1:89828120-89828139 | None:intergenic | 65.0% |
| GGGCGGAAGGAAACCAGCCA+AGG | + | chr3_1:89828121-89828140 | Msa0386070:CDS | 65.0% | |
| !! | AAGGGCGCCGCCACTACCAA+GGG | + | chr3_1:89828101-89828120 | Msa0386070:CDS | 65.0% |
| !! | CCTTCCGCCCTTGGTAGTGG+CGG | - | chr3_1:89828111-89828130 | None:intergenic | 65.0% |
| !! | GGCTGGTTTCCTTCCGCCCT+TGG | - | chr3_1:89828120-89828139 | None:intergenic | 65.0% |
| GGGCGGAAGGAAACCAGCCA+AGG | + | chr3_1:89828121-89828140 | Msa0386070:CDS | 65.0% | |
| !! | GAAGGGCGCCGCCACTACCA+AGG | + | chr3_1:89828100-89828119 | Msa0386070:CDS | 70.0% |
| CCGCCACTACCAAGGGCGGA+AGG | + | chr3_1:89828108-89828127 | Msa0386070:CDS | 70.0% | |
| !! | GAAGGGCGCCGCCACTACCA+AGG | + | chr3_1:89828100-89828119 | Msa0386070:CDS | 70.0% |
| CCGCCACTACCAAGGGCGGA+AGG | + | chr3_1:89828108-89828127 | Msa0386070:CDS | 70.0% | |
| GGCGCCGCCACTACCAAGGG+CGG | + | chr3_1:89828104-89828123 | Msa0386070:CDS | 75.0% | |
| GGCGCCGCCACTACCAAGGG+CGG | + | chr3_1:89828104-89828123 | Msa0386070:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 89827545 | 89829490 | 89827545 | ID=Msa0386070;Name=Msa0386070 |
| chr3_1 | mRNA | 89827545 | 89829490 | 89827545 | ID=Msa0386070-mRNA-1;Parent=Msa0386070;Name=Msa0386070-mRNA-1;_AED=0.05;_eAED=0.05;_QI=215|1|1|1|0.85|0.75|8|334|155 |
| chr3_1 | exon | 89827545 | 89827751 | 89827545 | ID=Msa0386070-mRNA-1:exon:24606;Parent=Msa0386070-mRNA-1 |
| chr3_1 | exon | 89827837 | 89827891 | 89827837 | ID=Msa0386070-mRNA-1:exon:24607;Parent=Msa0386070-mRNA-1 |
| chr3_1 | exon | 89828085 | 89828204 | 89828085 | ID=Msa0386070-mRNA-1:exon:24608;Parent=Msa0386070-mRNA-1 |
| chr3_1 | exon | 89828514 | 89828571 | 89828514 | ID=Msa0386070-mRNA-1:exon:24609;Parent=Msa0386070-mRNA-1 |
| chr3_1 | exon | 89828653 | 89828697 | 89828653 | ID=Msa0386070-mRNA-1:exon:24610;Parent=Msa0386070-mRNA-1 |
| chr3_1 | exon | 89828787 | 89828867 | 89828787 | ID=Msa0386070-mRNA-1:exon:24611;Parent=Msa0386070-mRNA-1 |
| chr3_1 | exon | 89828948 | 89829046 | 89828948 | ID=Msa0386070-mRNA-1:exon:24612;Parent=Msa0386070-mRNA-1 |
| chr3_1 | exon | 89829139 | 89829490 | 89829139 | ID=Msa0386070-mRNA-1:exon:24613;Parent=Msa0386070-mRNA-1 |
| chr3_1 | five_prime_UTR | 89827545 | 89827751 | 89827545 | ID=Msa0386070-mRNA-1:five_prime_utr;Parent=Msa0386070-mRNA-1 |
| chr3_1 | five_prime_UTR | 89827837 | 89827844 | 89827837 | ID=Msa0386070-mRNA-1:five_prime_utr;Parent=Msa0386070-mRNA-1 |
| chr3_1 | CDS | 89827845 | 89827891 | 89827845 | ID=Msa0386070-mRNA-1:cds;Parent=Msa0386070-mRNA-1 |
| chr3_1 | CDS | 89828085 | 89828204 | 89828085 | ID=Msa0386070-mRNA-1:cds;Parent=Msa0386070-mRNA-1 |
| chr3_1 | CDS | 89828514 | 89828571 | 89828514 | ID=Msa0386070-mRNA-1:cds;Parent=Msa0386070-mRNA-1 |
| chr3_1 | CDS | 89828653 | 89828697 | 89828653 | ID=Msa0386070-mRNA-1:cds;Parent=Msa0386070-mRNA-1 |
| chr3_1 | CDS | 89828787 | 89828867 | 89828787 | ID=Msa0386070-mRNA-1:cds;Parent=Msa0386070-mRNA-1 |
| chr3_1 | CDS | 89828948 | 89829046 | 89828948 | ID=Msa0386070-mRNA-1:cds;Parent=Msa0386070-mRNA-1 |
| chr3_1 | CDS | 89829139 | 89829156 | 89829139 | ID=Msa0386070-mRNA-1:cds;Parent=Msa0386070-mRNA-1 |
| chr3_1 | three_prime_UTR | 89829157 | 89829490 | 89829157 | ID=Msa0386070-mRNA-1:three_prime_utr;Parent=Msa0386070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
