Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187130 | AES99811.2 | 80.193 | 207 | 5 | 2 | 1 | 173 | 1 | 205 | 1.02e-109 | 331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187130 | sp|Q67ZU1|LIP2_ARATH | 35.470 | 234 | 106 | 4 | 5 | 193 | 9 | 242 | 4.08e-44 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187130 | G7KH68 | 80.193 | 207 | 5 | 2 | 1 | 173 | 1 | 205 | 4.87e-110 | 331 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033980 | Msa0187130 | 0.820992 | 5.116343e-53 | -8.615850e-47 |
| Msa0081930 | Msa0187130 | 0.807525 | 4.844814e-50 | -8.615850e-47 |
| Msa0187130 | Msa0309770 | 0.815824 | 7.582711e-52 | -8.615850e-47 |
| Msa0187130 | Msa0693380 | 0.805250 | 1.461715e-49 | -8.615850e-47 |
| Msa0187130 | Msa0831520 | 0.887364 | 1.522085e-72 | -8.615850e-47 |
| Msa0187130 | Msa0973600 | 0.801593 | 8.369842e-49 | -8.615850e-47 |
| Msa0187130 | Msa1023950 | 0.803286 | 3.748349e-49 | -8.615850e-47 |
| Msa0187130 | Msa1061680 | 0.810205 | 1.293784e-50 | -8.615850e-47 |
| Msa0187130 | Msa1340260 | 0.813806 | 2.124319e-51 | -8.615850e-47 |
| Msa0187130 | Msa1340270 | 0.809688 | 1.672221e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187130 | MtrunA17_Chr5g0438751 | 80.193 | 207 | 5 | 2 | 1 | 173 | 1 | 205 | 9.37e-114 | 331 |
| Msa0187130 | MtrunA17_Chr5g0394731 | 81.132 | 106 | 15 | 1 | 68 | 173 | 14 | 114 | 4.00e-60 | 186 |
| Msa0187130 | MtrunA17_Chr3g0120041 | 38.583 | 254 | 104 | 4 | 5 | 206 | 6 | 259 | 1.28e-54 | 176 |
| Msa0187130 | MtrunA17_Chr7g0250091 | 50.286 | 175 | 82 | 4 | 1 | 173 | 1 | 172 | 1.85e-54 | 178 |
| Msa0187130 | MtrunA17_Chr7g0250081 | 42.718 | 206 | 82 | 1 | 4 | 173 | 3 | 208 | 4.95e-54 | 178 |
| Msa0187130 | MtrunA17_Chr7g0225611 | 38.397 | 237 | 101 | 4 | 34 | 225 | 37 | 273 | 5.21e-52 | 173 |
| Msa0187130 | MtrunA17_Chr3g0119931 | 40.553 | 217 | 86 | 5 | 4 | 180 | 2 | 215 | 1.65e-49 | 162 |
| Msa0187130 | MtrunA17_Chr6g0462811 | 40.476 | 210 | 86 | 4 | 1 | 173 | 1 | 208 | 2.55e-48 | 162 |
| Msa0187130 | MtrunA17_Chr6g0459381 | 43.353 | 173 | 57 | 2 | 42 | 173 | 44 | 216 | 5.72e-46 | 154 |
| Msa0187130 | MtrunA17_Chr3g0120021 | 37.963 | 216 | 75 | 2 | 17 | 173 | 16 | 231 | 7.03e-45 | 155 |
| Msa0187130 | MtrunA17_Chr6g0459401 | 41.860 | 172 | 59 | 2 | 43 | 173 | 45 | 216 | 3.01e-44 | 149 |
| Msa0187130 | MtrunA17_Chr6g0459421 | 41.860 | 172 | 59 | 2 | 43 | 173 | 45 | 216 | 3.47e-44 | 149 |
| Msa0187130 | MtrunA17_Chr6g0459361 | 50.000 | 140 | 66 | 2 | 38 | 173 | 77 | 216 | 3.64e-44 | 149 |
| Msa0187130 | MtrunA17_Chr1g0207891 | 47.967 | 123 | 64 | 0 | 60 | 182 | 95 | 217 | 2.07e-36 | 132 |
| Msa0187130 | MtrunA17_Chr5g0394721 | 81.579 | 76 | 7 | 1 | 168 | 236 | 478 | 553 | 1.39e-31 | 121 |
| Msa0187130 | MtrunA17_Chr6g0462831 | 63.077 | 65 | 24 | 0 | 109 | 173 | 5 | 69 | 1.80e-23 | 95.1 |
| Msa0187130 | MtrunA17_Chr6g0462821 | 53.191 | 47 | 21 | 1 | 60 | 106 | 1 | 46 | 3.00e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187130 | AT5G14180.5 | 32.959 | 267 | 130 | 5 | 5 | 222 | 9 | 275 | 2.21e-46 | 156 |
| Msa0187130 | AT5G14180.3 | 33.582 | 268 | 127 | 6 | 5 | 222 | 9 | 275 | 3.64e-46 | 156 |
| Msa0187130 | AT5G14180.1 | 35.470 | 234 | 106 | 4 | 5 | 193 | 9 | 242 | 4.14e-45 | 155 |
| Msa0187130 | AT5G14180.4 | 48.571 | 140 | 68 | 2 | 57 | 193 | 4 | 142 | 2.11e-43 | 149 |
| Msa0187130 | AT5G14180.2 | 48.507 | 134 | 65 | 2 | 63 | 193 | 1 | 133 | 3.09e-41 | 143 |
| Msa0187130 | AT2G15230.1 | 34.951 | 206 | 115 | 5 | 27 | 230 | 56 | 244 | 1.25e-37 | 135 |
Find 45 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATAATGGATTTGATATT+TGG | 0.128774 | 2_1:+1848032 | Msa0187130:CDS |
| CTTGTCCAATTGTTGATCTT+TGG | 0.172501 | 2_1:-1848726 | None:intergenic |
| TTTCAAATATTTAGGATTAT+TGG | 0.176435 | 2_1:+1848479 | Msa0187130:intron |
| CGAGATTAAGAGCAAGTTAA+AGG | 0.257213 | 2_1:+1849130 | Msa0187130:CDS |
| ATTGATGGCGGGACATGTTC+TGG | 0.263122 | 2_1:+1849172 | Msa0187130:CDS |
| GCATTTCTGTTGGCAGATAA+TGG | 0.272759 | 2_1:+1848019 | Msa0187130:CDS |
| TGTATGTCCATGACTATATT+TGG | 0.309072 | 2_1:-1848074 | None:intergenic |
| ATATTTAGGATTATTGGAAT+TGG | 0.371704 | 2_1:+1848485 | Msa0187130:intron |
| CAATGCAGTAATAGTGCTTA+AGG | 0.377954 | 2_1:-1847411 | None:intergenic |
| CAGTTTGATCATGCACATAC+TGG | 0.396014 | 2_1:-1848549 | None:intergenic |
| TGCACATACTGGAATGTTGC+TGG | 0.419751 | 2_1:-1848538 | None:intergenic |
| CAGTATGTGCATGATCAAAC+TGG | 0.431605 | 2_1:+1848550 | Msa0187130:CDS |
| TTGCACATTCTTTGAGGAGA+TGG | 0.437483 | 2_1:+1849052 | Msa0187130:CDS |
| GGAGGCTTGCACATTCTTTG+AGG | 0.443690 | 2_1:+1849046 | Msa0187130:CDS |
| GTAGGGAACTTTGGTTGCAT+TGG | 0.445434 | 2_1:+1848694 | Msa0187130:intron |
| CATACACCATCATTGAGTTC+TGG | 0.445699 | 2_1:-1847437 | None:intergenic |
| ATAAGCAATTGGACAAAGTA+AGG | 0.449481 | 2_1:-1848762 | None:intergenic |
| ATCTAATCAACATAAGCAAT+TGG | 0.450668 | 2_1:-1848773 | None:intergenic |
| AGATCAGATTGAGGAATTGA+TGG | 0.455944 | 2_1:+1849157 | Msa0187130:CDS |
| AGGATTATTGGAATTGGTCA+TGG | 0.460448 | 2_1:+1848491 | Msa0187130:intron |
| TTGATGGCGGGACATGTTCT+GGG | 0.497923 | 2_1:+1849173 | Msa0187130:CDS |
| GTCTAATAGCGGAAAACTTG+TGG | 0.505009 | 2_1:+1849025 | Msa0187130:CDS |
| CTTAAGCACTATTACTGCAT+TGG | 0.510075 | 2_1:+1847412 | Msa0187130:CDS |
| AGCCTGACTGTGATCTCCAT+TGG | 0.514547 | 2_1:-1849092 | None:intergenic |
| GGATTATTGGAATTGGTCAT+GGG | 0.520687 | 2_1:+1848492 | Msa0187130:intron |
| AAAGGAGAAAGATCAGATTG+AGG | 0.521570 | 2_1:+1849148 | Msa0187130:CDS |
| TCAATCTCTTGCATTTCTGT+TGG | 0.522500 | 2_1:+1848009 | Msa0187130:CDS |
| CTATGCTTGTGAAGAACACT+TGG | 0.522607 | 2_1:+1847484 | Msa0187130:CDS |
| AATGCAGTAATAGTGCTTAA+GGG | 0.525404 | 2_1:-1847410 | None:intergenic |
| AATGCAAGAGATTGACTTGG+TGG | 0.533436 | 2_1:-1848001 | None:intergenic |
| CTCCAATGGAGATCACAGTC+AGG | 0.560382 | 2_1:+1849090 | Msa0187130:CDS |
| CTCGAAGGGATTTACTCCAA+TGG | 0.572881 | 2_1:+1849076 | Msa0187130:CDS |
| TTTGAGGAGATGGTCTCGAA+GGG | 0.575088 | 2_1:+1849062 | Msa0187130:CDS |
| CAGATTGAGGAATTGATGGC+GGG | 0.576230 | 2_1:+1849161 | Msa0187130:CDS |
| ACACTTGTGATTCTCTTCTG+TGG | 0.580138 | 2_1:+1847356 | Msa0187130:CDS |
| ACACTACGTTGGTCACTCAC+AGG | 0.582125 | 2_1:+1848582 | Msa0187130:CDS |
| CTTTGAGGAGATGGTCTCGA+AGG | 0.586496 | 2_1:+1849061 | Msa0187130:CDS |
| CGAGGAACCAAATATAGTCA+TGG | 0.610090 | 2_1:+1848067 | Msa0187130:CDS |
| TAATAGCGGAAAACTTGTGG+AGG | 0.646053 | 2_1:+1849028 | Msa0187130:CDS |
| TCAGATTGAGGAATTGATGG+CGG | 0.648868 | 2_1:+1849160 | Msa0187130:CDS |
| TAACAGAGTCTGTCTAATAG+CGG | 0.652600 | 2_1:+1849014 | Msa0187130:intron |
| TTGGCACCAGAACTCAATGA+TGG | 0.662541 | 2_1:+1847431 | Msa0187130:CDS |
| AGAAATGCAAGAGATTGACT+TGG | 0.662580 | 2_1:-1848004 | None:intergenic |
| ATTTGGATTGCTAACACACG+AGG | 0.667950 | 2_1:+1848049 | Msa0187130:CDS |
| TCGTCACTATTGAAGACACA+AGG | 0.696315 | 2_1:+1847461 | Msa0187130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTGAGTTTATATATTA+CGG | + | chr2_1:1847809-1847828 | Msa0187130:intron | 10.0% |
| !!! | TTTTTTTTTACTATATTACA+TGG | + | chr2_1:1848124-1848143 | Msa0187130:intron | 10.0% |
| !!! | TTATTTGAGTTTATATATTA+CGG | + | chr2_1:1847809-1847828 | Msa0187130:intron | 10.0% |
| !!! | TTTTTTTTTACTATATTACA+TGG | + | chr2_1:1848124-1848143 | Msa0187130:intron | 10.0% |
| !!! | ATATGTATGTAATTGTTTTT+AGG | + | chr2_1:1847647-1847666 | Msa0187130:intron | 15.0% |
| !!! | TTTCAAATATTTAGGATTAT+TGG | + | chr2_1:1848479-1848498 | Msa0187130:intron | 15.0% |
| !! | ATTGAATTATATATATGAAG+AGG | - | chr2_1:1848640-1848659 | None:intergenic | 15.0% |
| !!! | ATATGTATGTAATTGTTTTT+AGG | + | chr2_1:1847647-1847666 | Msa0187130:intron | 15.0% |
| !!! | TTTCAAATATTTAGGATTAT+TGG | + | chr2_1:1848479-1848498 | Msa0187130:intron | 15.0% |
| !! | ATTGAATTATATATATGAAG+AGG | - | chr2_1:1848640-1848659 | None:intergenic | 15.0% |
| !! | TATAAAAATAGCTTATGTCA+TGG | + | chr2_1:1847838-1847857 | Msa0187130:intron | 20.0% |
| !!! | ATCATTTTCTAATAACAACT+CGG | + | chr2_1:1848096-1848115 | Msa0187130:CDS | 20.0% |
| !!! | CAACATATTCTTTTAAATTG+TGG | - | chr2_1:1848276-1848295 | None:intergenic | 20.0% |
| !! | ATATCAGGTTTCAAATATTT+AGG | + | chr2_1:1848471-1848490 | Msa0187130:intron | 20.0% |
| !!! | ATATTTAGGATTATTGGAAT+TGG | + | chr2_1:1848485-1848504 | Msa0187130:intron | 20.0% |
| !! | TATAAAAATAGCTTATGTCA+TGG | + | chr2_1:1847838-1847857 | Msa0187130:intron | 20.0% |
| !!! | ATCATTTTCTAATAACAACT+CGG | + | chr2_1:1848096-1848115 | Msa0187130:CDS | 20.0% |
| !!! | CAACATATTCTTTTAAATTG+TGG | - | chr2_1:1848276-1848295 | None:intergenic | 20.0% |
| !! | ATATCAGGTTTCAAATATTT+AGG | + | chr2_1:1848471-1848490 | Msa0187130:intron | 20.0% |
| !!! | ATATTTAGGATTATTGGAAT+TGG | + | chr2_1:1848485-1848504 | Msa0187130:intron | 20.0% |
| ! | TTGAGAATGAAAACAACTTA+TGG | - | chr2_1:1847864-1847883 | None:intergenic | 25.0% |
| !!! | ATAAGTTGTTTTCATTCTCA+AGG | + | chr2_1:1847863-1847882 | Msa0187130:intron | 25.0% |
| ! | TGCATAAGCATTTATATGAT+TGG | + | chr2_1:1847941-1847960 | Msa0187130:intron | 25.0% |
| !!! | CAGATAATGGATTTGATATT+TGG | + | chr2_1:1848032-1848051 | Msa0187130:CDS | 25.0% |
| ! | TATTAGCAATGGAATCAAAT+TGG | - | chr2_1:1848454-1848473 | None:intergenic | 25.0% |
| !! | ATTGTTGAATTCCTTTTTGT+AGG | + | chr2_1:1848676-1848695 | Msa0187130:intron | 25.0% |
| !! | TTGTTGAATTCCTTTTTGTA+GGG | + | chr2_1:1848677-1848696 | Msa0187130:intron | 25.0% |
| !! | TTTTTCCAAAGATCAACAAT+TGG | + | chr2_1:1848721-1848740 | Msa0187130:CDS | 25.0% |
| ! | ATCTAATCAACATAAGCAAT+TGG | - | chr2_1:1848776-1848795 | None:intergenic | 25.0% |
| !!! | ATTTTCGAATTTAGCCTTAA+AGG | + | chr2_1:1848974-1848993 | Msa0187130:intron | 25.0% |
| !!! | TTTTCGAATTTAGCCTTAAA+GGG | + | chr2_1:1848975-1848994 | Msa0187130:intron | 25.0% |
| ! | TTGAGAATGAAAACAACTTA+TGG | - | chr2_1:1847864-1847883 | None:intergenic | 25.0% |
| !!! | ATAAGTTGTTTTCATTCTCA+AGG | + | chr2_1:1847863-1847882 | Msa0187130:intron | 25.0% |
| ! | TGCATAAGCATTTATATGAT+TGG | + | chr2_1:1847941-1847960 | Msa0187130:intron | 25.0% |
| !!! | CAGATAATGGATTTGATATT+TGG | + | chr2_1:1848032-1848051 | Msa0187130:CDS | 25.0% |
| ! | TATTAGCAATGGAATCAAAT+TGG | - | chr2_1:1848454-1848473 | None:intergenic | 25.0% |
| !! | ATTGTTGAATTCCTTTTTGT+AGG | + | chr2_1:1848676-1848695 | Msa0187130:intron | 25.0% |
| !! | TTGTTGAATTCCTTTTTGTA+GGG | + | chr2_1:1848677-1848696 | Msa0187130:intron | 25.0% |
| !! | TTTTTCCAAAGATCAACAAT+TGG | + | chr2_1:1848721-1848740 | Msa0187130:CDS | 25.0% |
| ! | ATCTAATCAACATAAGCAAT+TGG | - | chr2_1:1848776-1848795 | None:intergenic | 25.0% |
| !!! | ATTTTCGAATTTAGCCTTAA+AGG | + | chr2_1:1848974-1848993 | Msa0187130:intron | 25.0% |
| !!! | TTTTCGAATTTAGCCTTAAA+GGG | + | chr2_1:1848975-1848994 | Msa0187130:intron | 25.0% |
| AATGCAGTAATAGTGCTTAA+GGG | - | chr2_1:1847413-1847432 | None:intergenic | 30.0% | |
| GCAATTATATACATAGTAGC+TGG | - | chr2_1:1847586-1847605 | None:intergenic | 30.0% | |
| !! | TTTTAGGTGACAACAAAAGA+TGG | + | chr2_1:1847663-1847682 | Msa0187130:intron | 30.0% |
| ATAACTGGTATACTATTTCC+AGG | - | chr2_1:1847730-1847749 | None:intergenic | 30.0% | |
| !! | TATGATTGGTGTGTTTTTGT+AGG | + | chr2_1:1847955-1847974 | Msa0187130:intron | 30.0% |
| TGTATGTCCATGACTATATT+TGG | - | chr2_1:1848077-1848096 | None:intergenic | 30.0% | |
| !!! | TATTACATGGTTTTAAGTCG+CGG | + | chr2_1:1848137-1848156 | Msa0187130:intron | 30.0% |
| TCTCAAAATCCTTTATGTTG+TGG | + | chr2_1:1848231-1848250 | Msa0187130:intron | 30.0% | |
| ! | TTTTAAATTGTGGTCTGCAA+CGG | - | chr2_1:1848266-1848285 | None:intergenic | 30.0% |
| ! | GGATGATTTTGGATATTCAA+TGG | - | chr2_1:1848328-1848347 | None:intergenic | 30.0% |
| ! | TATAATTCCACGGATGATTT+TGG | - | chr2_1:1848339-1848358 | None:intergenic | 30.0% |
| TTGATTCCATTGCTAATATC+AGG | + | chr2_1:1848456-1848475 | Msa0187130:intron | 30.0% | |
| TTGAAACCTGATATTAGCAA+TGG | - | chr2_1:1848465-1848484 | None:intergenic | 30.0% | |
| ATAAGCAATTGGACAAAGTA+AGG | - | chr2_1:1848765-1848784 | None:intergenic | 30.0% | |
| AGAAACTTACTTACCCTTTA+AGG | - | chr2_1:1848991-1849010 | None:intergenic | 30.0% | |
| AATGCAGTAATAGTGCTTAA+GGG | - | chr2_1:1847413-1847432 | None:intergenic | 30.0% | |
| GCAATTATATACATAGTAGC+TGG | - | chr2_1:1847586-1847605 | None:intergenic | 30.0% | |
| !! | TTTTAGGTGACAACAAAAGA+TGG | + | chr2_1:1847663-1847682 | Msa0187130:intron | 30.0% |
| ATAACTGGTATACTATTTCC+AGG | - | chr2_1:1847730-1847749 | None:intergenic | 30.0% | |
| !! | TATGATTGGTGTGTTTTTGT+AGG | + | chr2_1:1847955-1847974 | Msa0187130:intron | 30.0% |
| TGTATGTCCATGACTATATT+TGG | - | chr2_1:1848077-1848096 | None:intergenic | 30.0% | |
| !!! | TATTACATGGTTTTAAGTCG+CGG | + | chr2_1:1848137-1848156 | Msa0187130:intron | 30.0% |
| TCTCAAAATCCTTTATGTTG+TGG | + | chr2_1:1848231-1848250 | Msa0187130:intron | 30.0% | |
| ! | TTTTAAATTGTGGTCTGCAA+CGG | - | chr2_1:1848266-1848285 | None:intergenic | 30.0% |
| ! | GGATGATTTTGGATATTCAA+TGG | - | chr2_1:1848328-1848347 | None:intergenic | 30.0% |
| ! | TATAATTCCACGGATGATTT+TGG | - | chr2_1:1848339-1848358 | None:intergenic | 30.0% |
| TTGATTCCATTGCTAATATC+AGG | + | chr2_1:1848456-1848475 | Msa0187130:intron | 30.0% | |
| TTGAAACCTGATATTAGCAA+TGG | - | chr2_1:1848465-1848484 | None:intergenic | 30.0% | |
| ATAAGCAATTGGACAAAGTA+AGG | - | chr2_1:1848765-1848784 | None:intergenic | 30.0% | |
| AGAAACTTACTTACCCTTTA+AGG | - | chr2_1:1848991-1849010 | None:intergenic | 30.0% | |
| CAATGCAGTAATAGTGCTTA+AGG | - | chr2_1:1847414-1847433 | None:intergenic | 35.0% | |
| CTTAAGCACTATTACTGCAT+TGG | + | chr2_1:1847412-1847431 | Msa0187130:CDS | 35.0% | |
| GCAAAGAATTCTACCAAAGA+AGG | + | chr2_1:1847701-1847720 | Msa0187130:intron | 35.0% | |
| TATTTCCAGGTTTCCTTCTT+TGG | - | chr2_1:1847717-1847736 | None:intergenic | 35.0% | |
| ATACCAGTTATGCTACAACA+TGG | + | chr2_1:1847739-1847758 | Msa0187130:intron | 35.0% | |
| GTGGTGGTTACTATAACTAT+AGG | + | chr2_1:1847776-1847795 | Msa0187130:intron | 35.0% | |
| TGGTTACTATAACTATAGGC+TGG | + | chr2_1:1847780-1847799 | Msa0187130:intron | 35.0% | |
| !! | ATTGGTGTGTTTTTGTAGGA+TGG | + | chr2_1:1847959-1847978 | Msa0187130:intron | 35.0% |
| AGAAATGCAAGAGATTGACT+TGG | - | chr2_1:1848007-1848026 | None:intergenic | 35.0% | |
| TCAATCTCTTGCATTTCTGT+TGG | + | chr2_1:1848009-1848028 | Msa0187130:CDS | 35.0% | |
| ! | ATTGACTGCATTTTTCCACA+AGG | - | chr2_1:1848175-1848194 | None:intergenic | 35.0% |
| !!! | GGATTTTGAGATCTTCACAA+TGG | - | chr2_1:1848222-1848241 | None:intergenic | 35.0% |
| AATATGTTGCTGCATTTCTC+TGG | + | chr2_1:1848287-1848306 | Msa0187130:intron | 35.0% | |
| TGAATATCCAAAATCATCCG+TGG | + | chr2_1:1848329-1848348 | Msa0187130:intron | 35.0% | |
| ! | AGATTTTCAATTTCGAGGAC+TGG | - | chr2_1:1848404-1848423 | None:intergenic | 35.0% |
| GTCCTCGAAATTGAAAATCT+CGG | + | chr2_1:1848404-1848423 | Msa0187130:intron | 35.0% | |
| ! | ATCCGAGATTTTCAATTTCG+AGG | - | chr2_1:1848409-1848428 | None:intergenic | 35.0% |
| ! | CGGATCATGTTAGTACTTTT+AGG | + | chr2_1:1848424-1848443 | Msa0187130:intron | 35.0% |
| AGGATTATTGGAATTGGTCA+TGG | + | chr2_1:1848491-1848510 | Msa0187130:intron | 35.0% | |
| GGATTATTGGAATTGGTCAT+GGG | + | chr2_1:1848492-1848511 | Msa0187130:intron | 35.0% | |
| TCACTCACAGGTGATTTAAT+TGG | + | chr2_1:1848594-1848613 | Msa0187130:intron | 35.0% | |
| ! | TTCCTTTTTGTAGGGAACTT+TGG | + | chr2_1:1848685-1848704 | Msa0187130:intron | 35.0% |
| AACCAAAGTTCCCTACAAAA+AGG | - | chr2_1:1848690-1848709 | None:intergenic | 35.0% | |
| CTTGTCCAATTGTTGATCTT+TGG | - | chr2_1:1848729-1848748 | None:intergenic | 35.0% | |
| TAACAGAGTCTGTCTAATAG+CGG | + | chr2_1:1849014-1849033 | Msa0187130:intron | 35.0% | |
| CGAGATTAAGAGCAAGTTAA+AGG | + | chr2_1:1849130-1849149 | Msa0187130:CDS | 35.0% | |
| AAAGGAGAAAGATCAGATTG+AGG | + | chr2_1:1849148-1849167 | Msa0187130:CDS | 35.0% | |
| AGATCAGATTGAGGAATTGA+TGG | + | chr2_1:1849157-1849176 | Msa0187130:CDS | 35.0% | |
| CAATGCAGTAATAGTGCTTA+AGG | - | chr2_1:1847414-1847433 | None:intergenic | 35.0% | |
| CTTAAGCACTATTACTGCAT+TGG | + | chr2_1:1847412-1847431 | Msa0187130:CDS | 35.0% | |
| GCAAAGAATTCTACCAAAGA+AGG | + | chr2_1:1847701-1847720 | Msa0187130:intron | 35.0% | |
| TATTTCCAGGTTTCCTTCTT+TGG | - | chr2_1:1847717-1847736 | None:intergenic | 35.0% | |
| ATACCAGTTATGCTACAACA+TGG | + | chr2_1:1847739-1847758 | Msa0187130:intron | 35.0% | |
| GTGGTGGTTACTATAACTAT+AGG | + | chr2_1:1847776-1847795 | Msa0187130:intron | 35.0% | |
| TGGTTACTATAACTATAGGC+TGG | + | chr2_1:1847780-1847799 | Msa0187130:intron | 35.0% | |
| !! | ATTGGTGTGTTTTTGTAGGA+TGG | + | chr2_1:1847959-1847978 | Msa0187130:intron | 35.0% |
| AGAAATGCAAGAGATTGACT+TGG | - | chr2_1:1848007-1848026 | None:intergenic | 35.0% | |
| TCAATCTCTTGCATTTCTGT+TGG | + | chr2_1:1848009-1848028 | Msa0187130:CDS | 35.0% | |
| ! | ATTGACTGCATTTTTCCACA+AGG | - | chr2_1:1848175-1848194 | None:intergenic | 35.0% |
| !!! | GGATTTTGAGATCTTCACAA+TGG | - | chr2_1:1848222-1848241 | None:intergenic | 35.0% |
| AATATGTTGCTGCATTTCTC+TGG | + | chr2_1:1848287-1848306 | Msa0187130:intron | 35.0% | |
| TGAATATCCAAAATCATCCG+TGG | + | chr2_1:1848329-1848348 | Msa0187130:intron | 35.0% | |
| ! | AGATTTTCAATTTCGAGGAC+TGG | - | chr2_1:1848404-1848423 | None:intergenic | 35.0% |
| GTCCTCGAAATTGAAAATCT+CGG | + | chr2_1:1848404-1848423 | Msa0187130:intron | 35.0% | |
| ! | ATCCGAGATTTTCAATTTCG+AGG | - | chr2_1:1848409-1848428 | None:intergenic | 35.0% |
| ! | CGGATCATGTTAGTACTTTT+AGG | + | chr2_1:1848424-1848443 | Msa0187130:intron | 35.0% |
| AGGATTATTGGAATTGGTCA+TGG | + | chr2_1:1848491-1848510 | Msa0187130:intron | 35.0% | |
| GGATTATTGGAATTGGTCAT+GGG | + | chr2_1:1848492-1848511 | Msa0187130:intron | 35.0% | |
| TCACTCACAGGTGATTTAAT+TGG | + | chr2_1:1848594-1848613 | Msa0187130:intron | 35.0% | |
| ! | TTCCTTTTTGTAGGGAACTT+TGG | + | chr2_1:1848685-1848704 | Msa0187130:intron | 35.0% |
| AACCAAAGTTCCCTACAAAA+AGG | - | chr2_1:1848690-1848709 | None:intergenic | 35.0% | |
| CTTGTCCAATTGTTGATCTT+TGG | - | chr2_1:1848729-1848748 | None:intergenic | 35.0% | |
| TAACAGAGTCTGTCTAATAG+CGG | + | chr2_1:1849014-1849033 | Msa0187130:intron | 35.0% | |
| CGAGATTAAGAGCAAGTTAA+AGG | + | chr2_1:1849130-1849149 | Msa0187130:CDS | 35.0% | |
| AAAGGAGAAAGATCAGATTG+AGG | + | chr2_1:1849148-1849167 | Msa0187130:CDS | 35.0% | |
| AGATCAGATTGAGGAATTGA+TGG | + | chr2_1:1849157-1849176 | Msa0187130:CDS | 35.0% | |
| ACACTTGTGATTCTCTTCTG+TGG | + | chr2_1:1847356-1847375 | Msa0187130:CDS | 40.0% | |
| CATACACCATCATTGAGTTC+TGG | - | chr2_1:1847440-1847459 | None:intergenic | 40.0% | |
| TCGTCACTATTGAAGACACA+AGG | + | chr2_1:1847461-1847480 | Msa0187130:CDS | 40.0% | |
| CTATGCTTGTGAAGAACACT+TGG | + | chr2_1:1847484-1847503 | Msa0187130:CDS | 40.0% | |
| TTCTACCAAAGAAGGAAACC+TGG | + | chr2_1:1847709-1847728 | Msa0187130:intron | 40.0% | |
| AGTCCATGTTGTAGCATAAC+TGG | - | chr2_1:1847745-1847764 | None:intergenic | 40.0% | |
| ! | GCTACAACATGGACTATTCA+TGG | + | chr2_1:1847750-1847769 | Msa0187130:intron | 40.0% |
| ! | CATGGACTATTCATGGTTAG+TGG | + | chr2_1:1847757-1847776 | Msa0187130:intron | 40.0% |
| ! | TTTTGTAGGATGGTGTGACA+TGG | + | chr2_1:1847969-1847988 | Msa0187130:intron | 40.0% |
| !! | AATGCAAGAGATTGACTTGG+TGG | - | chr2_1:1848004-1848023 | None:intergenic | 40.0% |
| GCATTTCTGTTGGCAGATAA+TGG | + | chr2_1:1848019-1848038 | Msa0187130:CDS | 40.0% | |
| ATTTGGATTGCTAACACACG+AGG | + | chr2_1:1848049-1848068 | Msa0187130:CDS | 40.0% | |
| CGAGGAACCAAATATAGTCA+TGG | + | chr2_1:1848067-1848086 | Msa0187130:CDS | 40.0% | |
| GTGGAAAAATGCAGTCAATG+TGG | + | chr2_1:1848176-1848195 | Msa0187130:intron | 40.0% | |
| TGTGGTCAAAATTGCAGTTG+CGG | + | chr2_1:1848194-1848213 | Msa0187130:intron | 40.0% | |
| ATTAAGGGGCCACAACATAA+AGG | - | chr2_1:1848243-1848262 | None:intergenic | 40.0% | |
| !! | GAGAGCGTCTTATAATTCCA+CGG | - | chr2_1:1848349-1848368 | None:intergenic | 40.0% |
| CAGTTTGATCATGCACATAC+TGG | - | chr2_1:1848552-1848571 | None:intergenic | 40.0% | |
| CAGTATGTGCATGATCAAAC+TGG | + | chr2_1:1848550-1848569 | Msa0187130:CDS | 40.0% | |
| GGACAAAAACTACACTACGT+TGG | + | chr2_1:1848571-1848590 | Msa0187130:CDS | 40.0% | |
| !!! | AGCATTTTTTGCTACAGGTG+AGG | - | chr2_1:1848801-1848820 | None:intergenic | 40.0% |
| !!! | TCAGCAGCATTTTTTGCTAC+AGG | - | chr2_1:1848806-1848825 | None:intergenic | 40.0% |
| GTGTTACCTCTGCAATGAAA+TGG | - | chr2_1:1848829-1848848 | None:intergenic | 40.0% | |
| ! | GTCTAATAGCGGAAAACTTG+TGG | + | chr2_1:1849025-1849044 | Msa0187130:CDS | 40.0% |
| ! | TAATAGCGGAAAACTTGTGG+AGG | + | chr2_1:1849028-1849047 | Msa0187130:CDS | 40.0% |
| ! | TTGCACATTCTTTGAGGAGA+TGG | + | chr2_1:1849052-1849071 | Msa0187130:CDS | 40.0% |
| TCAGATTGAGGAATTGATGG+CGG | + | chr2_1:1849160-1849179 | Msa0187130:CDS | 40.0% | |
| ACACTTGTGATTCTCTTCTG+TGG | + | chr2_1:1847356-1847375 | Msa0187130:CDS | 40.0% | |
| CATACACCATCATTGAGTTC+TGG | - | chr2_1:1847440-1847459 | None:intergenic | 40.0% | |
| TCGTCACTATTGAAGACACA+AGG | + | chr2_1:1847461-1847480 | Msa0187130:CDS | 40.0% | |
| CTATGCTTGTGAAGAACACT+TGG | + | chr2_1:1847484-1847503 | Msa0187130:CDS | 40.0% | |
| TTCTACCAAAGAAGGAAACC+TGG | + | chr2_1:1847709-1847728 | Msa0187130:intron | 40.0% | |
| AGTCCATGTTGTAGCATAAC+TGG | - | chr2_1:1847745-1847764 | None:intergenic | 40.0% | |
| ! | GCTACAACATGGACTATTCA+TGG | + | chr2_1:1847750-1847769 | Msa0187130:intron | 40.0% |
| ! | CATGGACTATTCATGGTTAG+TGG | + | chr2_1:1847757-1847776 | Msa0187130:intron | 40.0% |
| ! | TTTTGTAGGATGGTGTGACA+TGG | + | chr2_1:1847969-1847988 | Msa0187130:intron | 40.0% |
| !! | AATGCAAGAGATTGACTTGG+TGG | - | chr2_1:1848004-1848023 | None:intergenic | 40.0% |
| GCATTTCTGTTGGCAGATAA+TGG | + | chr2_1:1848019-1848038 | Msa0187130:CDS | 40.0% | |
| ATTTGGATTGCTAACACACG+AGG | + | chr2_1:1848049-1848068 | Msa0187130:CDS | 40.0% | |
| CGAGGAACCAAATATAGTCA+TGG | + | chr2_1:1848067-1848086 | Msa0187130:CDS | 40.0% | |
| GTGGAAAAATGCAGTCAATG+TGG | + | chr2_1:1848176-1848195 | Msa0187130:intron | 40.0% | |
| TGTGGTCAAAATTGCAGTTG+CGG | + | chr2_1:1848194-1848213 | Msa0187130:intron | 40.0% | |
| ATTAAGGGGCCACAACATAA+AGG | - | chr2_1:1848243-1848262 | None:intergenic | 40.0% | |
| !! | GAGAGCGTCTTATAATTCCA+CGG | - | chr2_1:1848349-1848368 | None:intergenic | 40.0% |
| CAGTTTGATCATGCACATAC+TGG | - | chr2_1:1848552-1848571 | None:intergenic | 40.0% | |
| CAGTATGTGCATGATCAAAC+TGG | + | chr2_1:1848550-1848569 | Msa0187130:CDS | 40.0% | |
| GGACAAAAACTACACTACGT+TGG | + | chr2_1:1848571-1848590 | Msa0187130:CDS | 40.0% | |
| !!! | AGCATTTTTTGCTACAGGTG+AGG | - | chr2_1:1848801-1848820 | None:intergenic | 40.0% |
| !!! | TCAGCAGCATTTTTTGCTAC+AGG | - | chr2_1:1848806-1848825 | None:intergenic | 40.0% |
| GTGTTACCTCTGCAATGAAA+TGG | - | chr2_1:1848829-1848848 | None:intergenic | 40.0% | |
| ! | GTCTAATAGCGGAAAACTTG+TGG | + | chr2_1:1849025-1849044 | Msa0187130:CDS | 40.0% |
| ! | TAATAGCGGAAAACTTGTGG+AGG | + | chr2_1:1849028-1849047 | Msa0187130:CDS | 40.0% |
| ! | TTGCACATTCTTTGAGGAGA+TGG | + | chr2_1:1849052-1849071 | Msa0187130:CDS | 40.0% |
| TCAGATTGAGGAATTGATGG+CGG | + | chr2_1:1849160-1849179 | Msa0187130:CDS | 40.0% | |
| TTGGCACCAGAACTCAATGA+TGG | + | chr2_1:1847431-1847450 | Msa0187130:CDS | 45.0% | |
| GGACTATTCATGGTTAGTGG+TGG | + | chr2_1:1847760-1847779 | Msa0187130:intron | 45.0% | |
| CGGTTACACTACAAACCTTG+TGG | + | chr2_1:1848157-1848176 | Msa0187130:intron | 45.0% | |
| !! | TGTGGTCTGCAACGGATTAA+GGG | - | chr2_1:1848258-1848277 | None:intergenic | 45.0% |
| !! | TTGTGGTCTGCAACGGATTA+AGG | - | chr2_1:1848259-1848278 | None:intergenic | 45.0% |
| TGCACATACTGGAATGTTGC+TGG | - | chr2_1:1848541-1848560 | None:intergenic | 45.0% | |
| GTAGGGAACTTTGGTTGCAT+TGG | + | chr2_1:1848694-1848713 | Msa0187130:intron | 45.0% | |
| TGCTGACCATTTCATTGCAG+AGG | + | chr2_1:1848820-1848839 | Msa0187130:intron | 45.0% | |
| TTTGAGGAGATGGTCTCGAA+GGG | + | chr2_1:1849062-1849081 | Msa0187130:CDS | 45.0% | |
| CTCGAAGGGATTTACTCCAA+TGG | + | chr2_1:1849076-1849095 | Msa0187130:CDS | 45.0% | |
| ! | CAGATTGAGGAATTGATGGC+GGG | + | chr2_1:1849161-1849180 | Msa0187130:CDS | 45.0% |
| TTGGCACCAGAACTCAATGA+TGG | + | chr2_1:1847431-1847450 | Msa0187130:CDS | 45.0% | |
| GGACTATTCATGGTTAGTGG+TGG | + | chr2_1:1847760-1847779 | Msa0187130:intron | 45.0% | |
| CGGTTACACTACAAACCTTG+TGG | + | chr2_1:1848157-1848176 | Msa0187130:intron | 45.0% | |
| !! | TGTGGTCTGCAACGGATTAA+GGG | - | chr2_1:1848258-1848277 | None:intergenic | 45.0% |
| !! | TTGTGGTCTGCAACGGATTA+AGG | - | chr2_1:1848259-1848278 | None:intergenic | 45.0% |
| TGCACATACTGGAATGTTGC+TGG | - | chr2_1:1848541-1848560 | None:intergenic | 45.0% | |
| GTAGGGAACTTTGGTTGCAT+TGG | + | chr2_1:1848694-1848713 | Msa0187130:intron | 45.0% | |
| TGCTGACCATTTCATTGCAG+AGG | + | chr2_1:1848820-1848839 | Msa0187130:intron | 45.0% | |
| TTTGAGGAGATGGTCTCGAA+GGG | + | chr2_1:1849062-1849081 | Msa0187130:CDS | 45.0% | |
| CTCGAAGGGATTTACTCCAA+TGG | + | chr2_1:1849076-1849095 | Msa0187130:CDS | 45.0% | |
| ! | CAGATTGAGGAATTGATGGC+GGG | + | chr2_1:1849161-1849180 | Msa0187130:CDS | 45.0% |
| !! | GTGGTCTGCAACGGATTAAG+GGG | - | chr2_1:1848257-1848276 | None:intergenic | 50.0% |
| GACGCTCTCAACTTAGACTC+TGG | + | chr2_1:1848360-1848379 | Msa0187130:intron | 50.0% | |
| ACACTACGTTGGTCACTCAC+AGG | + | chr2_1:1848582-1848601 | Msa0187130:CDS | 50.0% | |
| GGAGGCTTGCACATTCTTTG+AGG | + | chr2_1:1849046-1849065 | Msa0187130:CDS | 50.0% | |
| ! | CTTTGAGGAGATGGTCTCGA+AGG | + | chr2_1:1849061-1849080 | Msa0187130:CDS | 50.0% |
| CTCCAATGGAGATCACAGTC+AGG | + | chr2_1:1849090-1849109 | Msa0187130:CDS | 50.0% | |
| AGCCTGACTGTGATCTCCAT+TGG | - | chr2_1:1849095-1849114 | None:intergenic | 50.0% | |
| !! | ATTGATGGCGGGACATGTTC+TGG | + | chr2_1:1849172-1849191 | Msa0187130:CDS | 50.0% |
| !! | TTGATGGCGGGACATGTTCT+GGG | + | chr2_1:1849173-1849192 | Msa0187130:CDS | 50.0% |
| !! | GTGGTCTGCAACGGATTAAG+GGG | - | chr2_1:1848257-1848276 | None:intergenic | 50.0% |
| GACGCTCTCAACTTAGACTC+TGG | + | chr2_1:1848360-1848379 | Msa0187130:intron | 50.0% | |
| ACACTACGTTGGTCACTCAC+AGG | + | chr2_1:1848582-1848601 | Msa0187130:CDS | 50.0% | |
| GGAGGCTTGCACATTCTTTG+AGG | + | chr2_1:1849046-1849065 | Msa0187130:CDS | 50.0% | |
| ! | CTTTGAGGAGATGGTCTCGA+AGG | + | chr2_1:1849061-1849080 | Msa0187130:CDS | 50.0% |
| CTCCAATGGAGATCACAGTC+AGG | + | chr2_1:1849090-1849109 | Msa0187130:CDS | 50.0% | |
| AGCCTGACTGTGATCTCCAT+TGG | - | chr2_1:1849095-1849114 | None:intergenic | 50.0% | |
| !! | ATTGATGGCGGGACATGTTC+TGG | + | chr2_1:1849172-1849191 | Msa0187130:CDS | 50.0% |
| !! | TTGATGGCGGGACATGTTCT+GGG | + | chr2_1:1849173-1849192 | Msa0187130:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 1847326 | 1849211 | 1847326 | ID=Msa0187130;Name=Msa0187130 |
| chr2_1 | mRNA | 1847326 | 1849211 | 1847326 | ID=Msa0187130-mRNA-1;Parent=Msa0187130;Name=Msa0187130-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|5|0|236 |
| chr2_1 | exon | 1847326 | 1847505 | 1847326 | ID=Msa0187130-mRNA-1:exon:798;Parent=Msa0187130-mRNA-1 |
| chr2_1 | exon | 1847977 | 1848117 | 1847977 | ID=Msa0187130-mRNA-1:exon:799;Parent=Msa0187130-mRNA-1 |
| chr2_1 | exon | 1848493 | 1848603 | 1848493 | ID=Msa0187130-mRNA-1:exon:800;Parent=Msa0187130-mRNA-1 |
| chr2_1 | exon | 1848698 | 1848784 | 1848698 | ID=Msa0187130-mRNA-1:exon:801;Parent=Msa0187130-mRNA-1 |
| chr2_1 | exon | 1849020 | 1849211 | 1849020 | ID=Msa0187130-mRNA-1:exon:802;Parent=Msa0187130-mRNA-1 |
| chr2_1 | CDS | 1847326 | 1847505 | 1847326 | ID=Msa0187130-mRNA-1:cds;Parent=Msa0187130-mRNA-1 |
| chr2_1 | CDS | 1847977 | 1848117 | 1847977 | ID=Msa0187130-mRNA-1:cds;Parent=Msa0187130-mRNA-1 |
| chr2_1 | CDS | 1848493 | 1848603 | 1848493 | ID=Msa0187130-mRNA-1:cds;Parent=Msa0187130-mRNA-1 |
| chr2_1 | CDS | 1848698 | 1848784 | 1848698 | ID=Msa0187130-mRNA-1:cds;Parent=Msa0187130-mRNA-1 |
| chr2_1 | CDS | 1849020 | 1849211 | 1849020 | ID=Msa0187130-mRNA-1:cds;Parent=Msa0187130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
