AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1023950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1023950 MtrunA17_Chr7g0241661 82.730 359 32 1 1 329 1 359 0.0 596
Msa1023950 MtrunA17_Chr7g0241681 53.719 363 129 4 1 325 2 363 2.63e-118 345
Msa1023950 MtrunA17_Chr7g0241711 40.773 233 103 3 1 206 1 225 7.65e-34 124
Msa1023950 MtrunA17_Chr7g0241701 64.384 73 26 0 142 214 1 73 1.31e-26 101
Msa1023950 MtrunA17_Chr7g0241941 33.523 176 79 2 69 206 9 184 1.76e-25 101
Msa1023950 MtrunA17_Chr7g0248041 28.000 225 132 6 111 307 312 534 1.51e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1023950 AT5G04110.1 32.432 185 89 3 165 313 340 524 2.07e-22 98.2
Msa1023950 AT5G04110.3 32.432 185 89 3 165 313 340 524 2.07e-22 98.2
Msa1023950 AT5G04110.2 32.432 185 89 3 165 313 341 525 2.10e-22 98.2
Msa1023950 AT5G04110.4 32.121 165 76 3 165 293 340 504 9.08e-17 81.3

Find 54 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGACGAGCTTCGAAAATT+TGG 0.183100 7_1:-52292830 None:intergenic
TGACTTTGATGATTCTATTA+AGG 0.192630 7_1:+52292339 Msa1023950:CDS
TATCCATGCTAGAGATTTAA+TGG 0.197752 7_1:+52292396 Msa1023950:CDS
TTCAAGCTGAAGTTCGTAAA+TGG 0.225040 7_1:+52292566 Msa1023950:CDS
TGAGTTCCTTCTTTGATCTT+TGG 0.253488 7_1:-52292200 None:intergenic
TTAACACGATTAAATAATTC+AGG 0.271078 7_1:-52292643 None:intergenic
GACTTTGATGATTCTATTAA+GGG 0.305104 7_1:+52292340 Msa1023950:CDS
ACTTACCATCATTTATGTAT+TGG 0.365830 7_1:-52292126 None:intergenic
CTAGGTCCAATGGGAATAAC+TGG 0.367656 7_1:-52292541 None:intergenic
GTCTCTATACTCATACATCT+AGG 0.386269 7_1:-52292913 None:intergenic
TCATCATGCTCGTCATAGAT+TGG 0.403542 7_1:-52292867 None:intergenic
AAGAATATGCTTTAAAATCA+TGG 0.406708 7_1:+52292746 Msa1023950:CDS
ATGATAAAGATACGATGATA+TGG 0.421547 7_1:+52289163 Msa1023950:exon
CCAATGGGAATAACTGGTCT+TGG 0.436450 7_1:-52292535 None:intergenic
AACTGCACCTAAGGGAGATC+TGG 0.441097 7_1:-52292935 None:intergenic
AGCTAGAGAATGCTTAAAAT+CGG 0.441855 7_1:+52292681 Msa1023950:CDS
TCAAGCTGAAGTTCGTAAAT+GGG 0.444773 7_1:+52292567 Msa1023950:CDS
GGAAGATGGTTACCCCTAGA+AGG 0.456123 7_1:-52292514 None:intergenic
CGAACTTCAGCTTGAAACCT+AGG 0.456711 7_1:-52292559 None:intergenic
CCAAGACCAGTTATTCCCAT+TGG 0.466479 7_1:+52292535 Msa1023950:CDS
CATCATGCTCGTCATAGATT+GGG 0.471583 7_1:-52292866 None:intergenic
TTCACGATCAACTGCACCTA+AGG 0.479534 7_1:-52292944 None:intergenic
TCTATCATGTTCTGCACTAT+CGG 0.487951 7_1:+52292231 Msa1023950:CDS
GCGAGTAATCGATATTTGTA+TGG 0.505491 7_1:+52292418 Msa1023950:CDS
TTGCATTGTCATTTAGAGAA+GGG 0.520249 7_1:-52292276 None:intergenic
ATCGGTAAAGAGAAATATAG+TGG 0.522648 7_1:+52292169 Msa1023950:CDS
TTTAACCAATACATAAATGA+TGG 0.525857 7_1:+52292121 Msa1023950:CDS
TTAAAATCGGAGATTGATAC+CGG 0.526018 7_1:+52292694 Msa1023950:CDS
TAGAATCATCAAAGTCACTT+AGG 0.526045 7_1:-52292333 None:intergenic
AGCTTGAAACCTAGGTCCAA+TGG 0.530844 7_1:-52292551 None:intergenic
TGCTTGTGAATACTTTGCCT+CGG 0.531796 7_1:+52289101 None:intergenic
GAATAACTGGTCTTGGAAGA+TGG 0.535998 7_1:-52292528 None:intergenic
GCTTGAAACCTAGGTCCAAT+GGG 0.536651 7_1:-52292550 None:intergenic
TTTGCATTGTCATTTAGAGA+AGG 0.540742 7_1:-52292277 None:intergenic
CAGTTATTCCCATTGGACCT+AGG 0.541236 7_1:+52292542 Msa1023950:CDS
AAAATGCCAAAGATCAAAGA+AGG 0.541347 7_1:+52292194 Msa1023950:CDS
TGCATTGTCATTTAGAGAAG+GGG 0.543570 7_1:-52292275 None:intergenic
TCATGTTCTGCACTATCGGA+TGG 0.557424 7_1:+52292235 Msa1023950:CDS
ATAGAGACCAGATCTCCCTT+AGG 0.562925 7_1:+52292928 Msa1023950:CDS
GATAGTGCAGAACATGATAG+AGG 0.563241 7_1:-52292229 None:intergenic
GAAATCAAAAGAAGAAGACA+TGG 0.565129 7_1:+52292462 Msa1023950:CDS
GAGCATAGCATGTTTCATGT+TGG 0.569427 7_1:-52292599 None:intergenic
TTCATGTCTTGTTACATCCG+AGG 0.569467 7_1:-52289118 None:intergenic
TATAGCTTTCAAACCTTGTG+AGG 0.569964 7_1:+52289194 Msa1023950:CDS
TCTCTATACTCATACATCTA+GGG 0.574198 7_1:-52292912 None:intergenic
TCGCCATTAAATCTCTAGCA+TGG 0.577892 7_1:-52292399 None:intergenic
GCATTGTCATTTAGAGAAGG+GGG 0.603152 7_1:-52292274 None:intergenic
TGTGATGACTTCTCCTCACA+AGG 0.606079 7_1:-52289207 None:intergenic
TCACGATCAACTGCACCTAA+GGG 0.610761 7_1:-52292943 None:intergenic
GCTGAAGTTCGTAAATGGGA+TGG 0.617058 7_1:+52292571 Msa1023950:CDS
ATGCTCGTCATAGATTGGGA+TGG 0.629267 7_1:-52292862 None:intergenic
TGCTTTAAAATCATGGACAG+TGG 0.637188 7_1:+52292753 Msa1023950:CDS
TAAAGCTATCTTGATTCACA+AGG 0.651202 7_1:-52292372 None:intergenic
TGGTATCGAGACATCAATCG+AGG 0.690402 7_1:+52292438 Msa1023950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATGATTTTTTTTTTTTAA+TGG + chr7_1:52290046-52290065 Msa1023950:intron 10.0%
!! CAAATTAATAAATATGAAAA+AGG - chr7_1:52291261-52291280 None:intergenic 10.0%
!!! TTTTATCAATTATTTTTCTA+TGG + chr7_1:52291288-52291307 Msa1023950:intron 10.0%
!!! TTTTAATAATATAAACTCTA+AGG + chr7_1:52291964-52291983 Msa1023950:intron 10.0%
!!! AAAGATGTAATTTTAACTAA+AGG - chr7_1:52289608-52289627 None:intergenic 15.0%
!! CTCTAAATTGAAATTATTTA+GGG - chr7_1:52289842-52289861 None:intergenic 15.0%
!! CTCTAAATTCAAATTATTTA+GGG - chr7_1:52290451-52290470 None:intergenic 15.0%
!!! TTTATTTTTGAGAAAATTGA+TGG + chr7_1:52290724-52290743 Msa1023950:intron 15.0%
!! TAATTTAAAAAAAACGTTGA+AGG + chr7_1:52290860-52290879 Msa1023950:intron 15.0%
!! AATTTAAAAAAAACGTTGAA+GGG + chr7_1:52290861-52290880 Msa1023950:intron 15.0%
!! AGTTTAACATATTCATTTAA+TGG + chr7_1:52291095-52291114 Msa1023950:intron 15.0%
!!! AAATTGTAGCTATATTTTTA+AGG + chr7_1:52291626-52291645 Msa1023950:intron 15.0%
!!! AATTGTAGCTATATTTTTAA+GGG + chr7_1:52291627-52291646 Msa1023950:intron 15.0%
!!! AGAAAATAATTTTGATTCTT+AGG - chr7_1:52292073-52292092 None:intergenic 15.0%
!!! AGACATGAAAAATATGTTTT+AGG + chr7_1:52289132-52289151 Msa1023950:five_prime_UTR 20.0%
!!! GACATGAAAAATATGTTTTA+GGG + chr7_1:52289133-52289152 Msa1023950:five_prime_UTR 20.0%
!!! CATTATGTAAGTCTTATTTA+TGG + chr7_1:52289365-52289384 Msa1023950:intron 20.0%
!!! CAGTCTTTTAAATCATAAAA+TGG + chr7_1:52289487-52289506 Msa1023950:intron 20.0%
!! GAAACTTAAAAACAAAGTAA+CGG - chr7_1:52289518-52289537 None:intergenic 20.0%
!!! TAAAGTTGATGTGTATATAA+CGG + chr7_1:52289557-52289576 Msa1023950:intron 20.0%
!!! ATTTTAATGGTTCAATTTCT+TGG + chr7_1:52289774-52289793 Msa1023950:intron 20.0%
!! CCTCTAAATTGAAATTATTT+AGG - chr7_1:52289843-52289862 None:intergenic 20.0%
!! CCTAAATAATTTCAATTTAG+AGG + chr7_1:52289840-52289859 Msa1023950:intron 20.0%
!!! TTTTGAGTTAAAAATCTATG+TGG + chr7_1:52289946-52289965 Msa1023950:intron 20.0%
!! AAAACATAAAGATACAAAGA+CGG + chr7_1:52290168-52290187 Msa1023950:intron 20.0%
!! TCATATTAGACATAATACAT+TGG - chr7_1:52290332-52290351 None:intergenic 20.0%
!!! GATCGTAATAATGATTTTAA+TGG + chr7_1:52290371-52290390 Msa1023950:intron 20.0%
!! CCTCTAAATTCAAATTATTT+AGG - chr7_1:52290452-52290471 None:intergenic 20.0%
!! CCTAAATAATTTGAATTTAG+AGG + chr7_1:52290449-52290468 Msa1023950:intron 20.0%
!!! TAAGCAATTTTTAATAGAAG+TGG + chr7_1:52290553-52290572 Msa1023950:intron 20.0%
!! AAATTTACTAGTATTCCTTT+AGG - chr7_1:52290682-52290701 None:intergenic 20.0%
!! TATAGAATTGAACATTAGAA+GGG - chr7_1:52290825-52290844 None:intergenic 20.0%
!! ATTTAAAAAAAACGTTGAAG+GGG + chr7_1:52290862-52290881 Msa1023950:intron 20.0%
!! TATAAAGTTTGTAAATGGTA+CGG - chr7_1:52290931-52290950 None:intergenic 20.0%
!! CAATGTATAAAGTTTGTAAA+TGG - chr7_1:52290936-52290955 None:intergenic 20.0%
!!! CATTTTAGTATAACCAATTT+TGG - chr7_1:52291379-52291398 None:intergenic 20.0%
!! CAAAATTGGTTATACTAAAA+TGG + chr7_1:52291377-52291396 Msa1023950:intron 20.0%
!! TATTATTCATAAGTTTGTCA+AGG - chr7_1:52291536-52291555 None:intergenic 20.0%
!!! GGTTGTTAATTTTATTTACA+AGG + chr7_1:52291857-52291876 Msa1023950:intron 20.0%
!!! TCTTTTTTTTATATCAGAAG+AGG + chr7_1:52292095-52292114 Msa1023950:intron 20.0%
!! TTTAACCAATACATAAATGA+TGG + chr7_1:52292121-52292140 Msa1023950:CDS 20.0%
!! TTAACACGATTAAATAATTC+AGG - chr7_1:52292646-52292665 None:intergenic 20.0%
!!! AAGAATATGCTTTAAAATCA+TGG + chr7_1:52292746-52292765 Msa1023950:CDS 20.0%
! ATGATAAAGATACGATGATA+TGG + chr7_1:52289163-52289182 Msa1023950:exon 25.0%
! AAATAATGTATACATACCTG+TGG - chr7_1:52289294-52289313 None:intergenic 25.0%
! GGTGTCTCAATTTATTTAAA+AGG + chr7_1:52289386-52289405 Msa1023950:intron 25.0%
! GTCTAATATGATGAATTCAA+TGG + chr7_1:52289732-52289751 Msa1023950:intron 25.0%
!! GATCGAAATGATGATTTTAA+TGG + chr7_1:52289761-52289780 Msa1023950:intron 25.0%
! TTGACATATGAGCATAAAAA+AGG + chr7_1:52289971-52289990 Msa1023950:intron 25.0%
! ATATTAGACCAAATACATTG+TGG - chr7_1:52289997-52290016 None:intergenic 25.0%
! GTCTAATATGATGATTTCAA+TGG + chr7_1:52290008-52290027 Msa1023950:intron 25.0%
! GTCTAATATGATGATTTCAA+TGG + chr7_1:52290008-52290027 Msa1023950:intron 25.0%
!!! ATTTTAATGGTTCGATTTCT+GGG + chr7_1:52290384-52290403 Msa1023950:intron 25.0%
!! ATTCAAATTTCTCTAAAGAG+TGG - chr7_1:52290791-52290810 None:intergenic 25.0%
! GTATAGAATTGAACATTAGA+AGG - chr7_1:52290826-52290845 None:intergenic 25.0%
!! TGGTTATACTAAAATGGATT+TGG + chr7_1:52291383-52291402 Msa1023950:intron 25.0%
! AAACATAAGTCAATCTAAAC+GGG - chr7_1:52291409-52291428 None:intergenic 25.0%
! CAAACATAAGTCAATCTAAA+CGG - chr7_1:52291410-52291429 None:intergenic 25.0%
! GCTTATAAAAAAACAGCTTA+TGG - chr7_1:52291511-52291530 None:intergenic 25.0%
!! AAGAATGAATATTTTGTCCA+TGG + chr7_1:52291754-52291773 Msa1023950:intron 25.0%
!! AGAATGAATATTTTGTCCAT+GGG + chr7_1:52291755-52291774 Msa1023950:intron 25.0%
!! TTATGTCTCTAAAAGTTACA+AGG - chr7_1:52291807-52291826 None:intergenic 25.0%
!!! AACTTTTGAGATGATTTCAA+AGG - chr7_1:52291894-52291913 None:intergenic 25.0%
!!! TAAGGTATGATTTTCTGAAA+AGG + chr7_1:52291982-52292001 Msa1023950:intron 25.0%
!!! TATGATTTTCTGAAAAGGTA+AGG + chr7_1:52291987-52292006 Msa1023950:intron 25.0%
! ACTTACCATCATTTATGTAT+TGG - chr7_1:52292129-52292148 None:intergenic 25.0%
!! TGACTTTGATGATTCTATTA+AGG + chr7_1:52292339-52292358 Msa1023950:CDS 25.0%
!! GACTTTGATGATTCTATTAA+GGG + chr7_1:52292340-52292359 Msa1023950:CDS 25.0%
! TATACATACCTGTGGATTTT+TGG - chr7_1:52289286-52289305 None:intergenic 30.0%
ACATAATGTATACATACCTG+TGG - chr7_1:52289353-52289372 None:intergenic 30.0%
GATATACCAAATACATCATG+CGG + chr7_1:52289408-52289427 Msa1023950:intron 30.0%
TTAAAAACAAAGTAACGGTG+TGG - chr7_1:52289513-52289532 None:intergenic 30.0%
ACCTCAAAGAAAAATTGACT+AGG + chr7_1:52289653-52289672 Msa1023950:intron 30.0%
TAATGGTTCAATTTCTTGGT+TGG + chr7_1:52289778-52289797 Msa1023950:intron 30.0%
AAAAAAGGCCACAATGTATT+TGG + chr7_1:52289986-52290005 Msa1023950:intron 30.0%
!! GATTTTAATGGTTCGATTTC+TGG + chr7_1:52290383-52290402 Msa1023950:intron 30.0%
! AATTGCTTACATGTCTGTTT+TGG - chr7_1:52290542-52290561 None:intergenic 30.0%
ACTTCTCAAGATAACAATTG+AGG - chr7_1:52290995-52291014 None:intergenic 30.0%
! CATGCATATCTTTGTCTTTT+TGG - chr7_1:52291356-52291375 None:intergenic 30.0%
AAAGATATGCATGCCAAAAT+TGG + chr7_1:52291363-52291382 Msa1023950:intron 30.0%
!! TGTAGCTATATTTTTAAGGG+AGG + chr7_1:52291630-52291649 Msa1023950:intron 30.0%
!! GTAGCTATATTTTTAAGGGA+GGG + chr7_1:52291631-52291650 Msa1023950:intron 30.0%
!! TAGCTATATTTTTAAGGGAG+GGG + chr7_1:52291632-52291651 Msa1023950:intron 30.0%
! GAATGAATATTTTGTCCATG+GGG + chr7_1:52291756-52291775 Msa1023950:intron 30.0%
TTGAGATGATTTCAAAGGTA+AGG - chr7_1:52291889-52291908 None:intergenic 30.0%
!! AGCTTTGAAATCATCTCAAT+TGG - chr7_1:52291934-52291953 None:intergenic 30.0%
ATCGGTAAAGAGAAATATAG+TGG + chr7_1:52292169-52292188 Msa1023950:CDS 30.0%
AAAATGCCAAAGATCAAAGA+AGG + chr7_1:52292194-52292213 Msa1023950:CDS 30.0%
! TTGCATTGTCATTTAGAGAA+GGG - chr7_1:52292279-52292298 None:intergenic 30.0%
! TTTGCATTGTCATTTAGAGA+AGG - chr7_1:52292280-52292299 None:intergenic 30.0%
! AATGACAATGCAAAGTTTTG+TGG + chr7_1:52292286-52292305 Msa1023950:CDS 30.0%
TAGAATCATCAAAGTCACTT+AGG - chr7_1:52292336-52292355 None:intergenic 30.0%
TAAAGCTATCTTGATTCACA+AGG - chr7_1:52292375-52292394 None:intergenic 30.0%
TATCCATGCTAGAGATTTAA+TGG + chr7_1:52292396-52292415 Msa1023950:CDS 30.0%
GAAATCAAAAGAAGAAGACA+TGG + chr7_1:52292462-52292481 Msa1023950:CDS 30.0%
! TCAAGAACTTTTTACCTTCT+AGG + chr7_1:52292500-52292519 Msa1023950:CDS 30.0%
! CAAGAACTTTTTACCTTCTA+GGG + chr7_1:52292501-52292520 Msa1023950:CDS 30.0%
! AAGAACTTTTTACCTTCTAG+GGG + chr7_1:52292502-52292521 Msa1023950:CDS 30.0%
AATCGTGTTAAAAAACGCAT+CGG + chr7_1:52292655-52292674 Msa1023950:CDS 30.0%
AGCTAGAGAATGCTTAAAAT+CGG + chr7_1:52292681-52292700 Msa1023950:CDS 30.0%
TTAAAATCGGAGATTGATAC+CGG + chr7_1:52292694-52292713 Msa1023950:CDS 30.0%
TCTCTATACTCATACATCTA+GGG - chr7_1:52292915-52292934 None:intergenic 30.0%
TATAGCTTTCAAACCTTGTG+AGG + chr7_1:52289194-52289213 Msa1023950:CDS 35.0%
!! TTCTAGTTCCAAAAATCCAC+AGG + chr7_1:52289275-52289294 Msa1023950:CDS 35.0%
!! TTCTAGTTCTAAACATCCAC+AGG + chr7_1:52289334-52289353 Msa1023950:intron 35.0%
AAAAGACCGCATGATGTATT+TGG - chr7_1:52289417-52289436 None:intergenic 35.0%
! GCCTAGTCAATTTTTCTTTG+AGG - chr7_1:52289657-52289676 None:intergenic 35.0%
CAGAAGAAGGTTAAAGAAGA+AGG - chr7_1:52289683-52289702 None:intergenic 35.0%
CTTCGTATTGTACACAGTTT+GGG + chr7_1:52290263-52290282 Msa1023950:intron 35.0%
AAAAGACCGCAAGATGTATT+TGG + chr7_1:52290656-52290675 Msa1023950:intron 35.0%
TTTAGGCCAAATACATCTTG+CGG - chr7_1:52290665-52290684 None:intergenic 35.0%
! CAATTGAGGTGTTAGCTTAA+TGG - chr7_1:52290981-52291000 None:intergenic 35.0%
TCTCAGAGACGATTGTAAAA+TGG + chr7_1:52291836-52291855 Msa1023950:intron 35.0%
!!! GCTACTAGTTTTGAACTCAT+CGG + chr7_1:52292151-52292170 Msa1023950:CDS 35.0%
TGAGTTCCTTCTTTGATCTT+TGG - chr7_1:52292203-52292222 None:intergenic 35.0%
TCTATCATGTTCTGCACTAT+CGG + chr7_1:52292231-52292250 Msa1023950:CDS 35.0%
! TGCATTGTCATTTAGAGAAG+GGG - chr7_1:52292278-52292297 None:intergenic 35.0%
GCGAGTAATCGATATTTGTA+TGG + chr7_1:52292418-52292437 Msa1023950:CDS 35.0%
TTCAAGCTGAAGTTCGTAAA+TGG + chr7_1:52292566-52292585 Msa1023950:CDS 35.0%
TCAAGCTGAAGTTCGTAAAT+GGG + chr7_1:52292567-52292586 Msa1023950:CDS 35.0%
!!! TTGATACCGGTTTTTCAAGT+CGG + chr7_1:52292707-52292726 Msa1023950:CDS 35.0%
! AAACTTCCGACTTGAAAAAC+CGG - chr7_1:52292716-52292735 None:intergenic 35.0%
!! TGCTTTAAAATCATGGACAG+TGG + chr7_1:52292753-52292772 Msa1023950:CDS 35.0%
GTCTCTATACTCATACATCT+AGG - chr7_1:52292916-52292935 None:intergenic 35.0%
! TTCATGTCTTGTTACATCCG+AGG - chr7_1:52289121-52289140 None:intergenic 40.0%
ACTACGAAAGTTGCAGAAGA+AGG - chr7_1:52289696-52289715 None:intergenic 40.0%
CCAAACTGTGTACAATACGA+AGG - chr7_1:52290265-52290284 None:intergenic 40.0%
CCTTCGTATTGTACACAGTT+TGG + chr7_1:52290262-52290281 Msa1023950:intron 40.0%
!!! TGTCTGTTTTGGTGCTCATA+TGG - chr7_1:52290531-52290550 None:intergenic 40.0%
GCAAGATGTATTTGGCCTAA+AGG + chr7_1:52290664-52290683 Msa1023950:intron 40.0%
TTTCCCTCAAGCATCTTCAA+AGG - chr7_1:52291046-52291065 None:intergenic 40.0%
!! ATTTTTAAGGGAGGGGAATG+TGG + chr7_1:52291639-52291658 Msa1023950:intron 40.0%
GATAGTGCAGAACATGATAG+AGG - chr7_1:52292232-52292251 None:intergenic 40.0%
! GCATTGTCATTTAGAGAAGG+GGG - chr7_1:52292277-52292296 None:intergenic 40.0%
TCGCCATTAAATCTCTAGCA+TGG - chr7_1:52292402-52292421 None:intergenic 40.0%
!! GAATAACTGGTCTTGGAAGA+TGG - chr7_1:52292531-52292550 None:intergenic 40.0%
GAGCATAGCATGTTTCATGT+TGG - chr7_1:52292602-52292621 None:intergenic 40.0%
CATGACGAGCTTCGAAAATT+TGG - chr7_1:52292833-52292852 None:intergenic 40.0%
! CAAATTTTCGAAGCTCGTCA+TGG + chr7_1:52292831-52292850 Msa1023950:CDS 40.0%
CATCATGCTCGTCATAGATT+GGG - chr7_1:52292869-52292888 None:intergenic 40.0%
TCATCATGCTCGTCATAGAT+TGG - chr7_1:52292870-52292889 None:intergenic 40.0%
TGTGATGACTTCTCCTCACA+AGG - chr7_1:52289210-52289229 None:intergenic 45.0%
ACATTGGAGCAAGTACGACA+AGG - chr7_1:52290316-52290335 None:intergenic 45.0%
! TCCTCCTTTGAAGATGCTTG+AGG + chr7_1:52291039-52291058 Msa1023950:intron 45.0%
! CCTCCTTTGAAGATGCTTGA+GGG + chr7_1:52291040-52291059 Msa1023950:intron 45.0%
! TCCATGGGGTGCAAGTTTTA+TGG + chr7_1:52291770-52291789 Msa1023950:intron 45.0%
ACCATAAAACTTGCACCCCA+TGG - chr7_1:52291774-52291793 None:intergenic 45.0%
TCATGTTCTGCACTATCGGA+TGG + chr7_1:52292235-52292254 Msa1023950:CDS 45.0%
! TGGTATCGAGACATCAATCG+AGG + chr7_1:52292438-52292457 Msa1023950:CDS 45.0%
! CCAATGGGAATAACTGGTCT+TGG - chr7_1:52292538-52292557 None:intergenic 45.0%
CCAAGACCAGTTATTCCCAT+TGG + chr7_1:52292535-52292554 Msa1023950:CDS 45.0%
CTAGGTCCAATGGGAATAAC+TGG - chr7_1:52292544-52292563 None:intergenic 45.0%
CAGTTATTCCCATTGGACCT+AGG + chr7_1:52292542-52292561 Msa1023950:CDS 45.0%
GCTTGAAACCTAGGTCCAAT+GGG - chr7_1:52292553-52292572 None:intergenic 45.0%
AGCTTGAAACCTAGGTCCAA+TGG - chr7_1:52292554-52292573 None:intergenic 45.0%
CGAACTTCAGCTTGAAACCT+AGG - chr7_1:52292562-52292581 None:intergenic 45.0%
GCTGAAGTTCGTAAATGGGA+TGG + chr7_1:52292571-52292590 Msa1023950:CDS 45.0%
ATGCTCGTCATAGATTGGGA+TGG - chr7_1:52292865-52292884 None:intergenic 45.0%
ATAGAGACCAGATCTCCCTT+AGG + chr7_1:52292928-52292947 Msa1023950:CDS 45.0%
TCACGATCAACTGCACCTAA+GGG - chr7_1:52292946-52292965 None:intergenic 45.0%
TTCACGATCAACTGCACCTA+AGG - chr7_1:52292947-52292966 None:intergenic 45.0%
!! TTTGATAAAAAAAATATTAA+AGG - chr7_1:52289466-52289485 None:intergenic 5.0%
!!! TAAAATATATTTTTTTTTAG+AGG + chr7_1:52289887-52289906 Msa1023950:intron 5.0%
!! CTAAAAAAATAAATTATTTA+GGG - chr7_1:52290127-52290146 None:intergenic 5.0%
!! TCTAAAAAAATAAATTATTT+AGG - chr7_1:52290128-52290147 None:intergenic 5.0%
!! AAAATAATTGATAAAAAAAT+TGG - chr7_1:52291284-52291303 None:intergenic 5.0%
CCCTCAAGCATCTTCAAAGG+AGG - chr7_1:52291043-52291062 None:intergenic 50.0%
GGAAGATGGTTACCCCTAGA+AGG - chr7_1:52292517-52292536 None:intergenic 50.0%
AACTGCACCTAAGGGAGATC+TGG - chr7_1:52292938-52292957 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 52289111 52292981 52289111 ID=Msa1023950;Name=Msa1023950
chr7_1 mRNA 52289111 52292981 52289111 ID=Msa1023950-mRNA-1;Parent=Msa1023950;Name=Msa1023950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=66|1|0.5|1|1|1|2|0|329
chr7_1 exon 52289111 52289296 52289111 ID=Msa1023950-mRNA-1:exon:10375;Parent=Msa1023950-mRNA-1
chr7_1 exon 52292112 52292981 52292112 ID=Msa1023950-mRNA-1:exon:10376;Parent=Msa1023950-mRNA-1
chr7_1 five_prime_UTR 52289111 52289176 52289111 ID=Msa1023950-mRNA-1:five_prime_utr;Parent=Msa1023950-mRNA-1
chr7_1 CDS 52289177 52289296 52289177 ID=Msa1023950-mRNA-1:cds;Parent=Msa1023950-mRNA-1
chr7_1 CDS 52292112 52292981 52292112 ID=Msa1023950-mRNA-1:cds;Parent=Msa1023950-mRNA-1
Gene Sequence

>Msa1023950

ATGATATGGTCAAAAGATATAGCTTTCAAACCTTGTGAGGAGAAGTCATCACATCATATTCTTCAAAATCAAAAGCACAAAGATCAAGTGCTTTTGAATTCTAGTTCCAAAAATCCACAGAAGAGGAAATTTAACCAATACATAAATGATGGTAAGTGCGCTACTAGTTTTGAACTCATCGGTAAAGAGAAATATAGTGGTGAAAATGCCAAAGATCAAAGAAGGAACTCATCTTATCCTCTATCATGTTCTGCACTATCGGATGGAACACAAGAATATGTTCCCCCTTCTCTAAATGACAATGCAAAGTTTTGTGGTATTGCTACACAAGACTGCTCTCACCTAAGTGACTTTGATGATTCTATTAAGGGTTCTAGTTACCTTGTGAATCAAGATAGCTTTAATATCCATGCTAGAGATTTAATGGCGAGTAATCGATATTTGTATGGTATCGAGACATCAATCGAGGAGAAATCAAAAGAAGAAGACATGGAAGTCATTAACTCACTCAAGAACTTTTTACCTTCTAGGGGTAACCATCTTCCAAGACCAGTTATTCCCATTGGACCTAGGTTTCAAGCTGAAGTTCGTAAATGGGATGGCAAAGCCAACATGAAACATGCTATGCTCAACTCATGCACGTGTGACAATCCTGAATTATTTAATCGTGTTAAAAAACGCATCGGTGAAGCTAGAGAATGCTTAAAATCGGAGATTGATACCGGTTTTTCAAGTCGGAAGTTTGATGACATAGAAGAATATGCTTTAAAATCATGGACAGTGGAAGAGCAAAAGAAATTTGAATCTCTAAAAAAATTGAATTTGCTATCAAGTTACACCAAATTTTCGAAGCTCGTCATGGAGTACTTTCCATCCCAATCTATGACGAGCATGATGAATTACTATTATAATGTATACATCCCTAGATGTATGAGTATAGAGACCAGATCTCCCTTAGGTGCAGTTGATCGTGAATCAAAATTGAACTAG

Protein sequence

>Msa1023950

MIWSKDIAFKPCEEKSSHHILQNQKHKDQVLLNSSSKNPQKRKFNQYINDGKCATSFELIGKEKYSGENAKDQRRNSSYPLSCSALSDGTQEYVPPSLNDNAKFCGIATQDCSHLSDFDDSIKGSSYLVNQDSFNIHARDLMASNRYLYGIETSIEEKSKEEDMEVINSLKNFLPSRGNHLPRPVIPIGPRFQAEVRKWDGKANMKHAMLNSCTCDNPELFNRVKKRIGEARECLKSEIDTGFSSRKFDDIEEYALKSWTVEEQKKFESLKKLNLLSSYTKFSKLVMEYFPSQSMTSMMNYYYNVYIPRCMSIETRSPLGAVDRESKLN*