Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033980 | GAU46537.1 | 66.981 | 106 | 34 | 1 | 7 | 111 | 1 | 106 | 6.74e-41 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033980 | A0A2Z6PM71 | 66.981 | 106 | 34 | 1 | 7 | 111 | 1 | 106 | 3.22e-41 | 145 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004860 | Msa0033980 | 0.806984 | 6.306330e-50 | -8.615850e-47 |
| Msa0011960 | Msa0033980 | 0.801331 | 9.471367e-49 | -8.615850e-47 |
| Msa0012040 | Msa0033980 | 0.818647 | 1.757376e-52 | -8.615850e-47 |
| Msa0028660 | Msa0033980 | 0.837030 | 6.609841e-57 | -8.615850e-47 |
| Msa0032580 | Msa0033980 | 0.808525 | 2.968088e-50 | -8.615850e-47 |
| Msa0033980 | Msa0039330 | 0.803760 | 2.989116e-49 | -8.615850e-47 |
| Msa0033980 | Msa0040450 | 0.829345 | 5.422454e-55 | -8.615850e-47 |
| Msa0033980 | Msa0044540 | -0.817911 | 2.579402e-52 | -8.615850e-47 |
| Msa0033980 | Msa0051770 | 0.833834 | 4.247061e-56 | -8.615850e-47 |
| Msa0033980 | Msa0052640 | 0.803174 | 3.953765e-49 | -8.615850e-47 |
| Msa0033980 | Msa0052770 | 0.828156 | 1.051242e-54 | -8.615850e-47 |
| Msa0033980 | Msa0054440 | 0.806162 | 9.404094e-50 | -8.615850e-47 |
| Msa0033980 | Msa0054480 | 0.800034 | 1.741234e-48 | -8.615850e-47 |
| Msa0033980 | Msa0073480 | 0.816577 | 5.146961e-52 | -8.615850e-47 |
| Msa0033980 | Msa0076320 | 0.806277 | 8.894596e-50 | -8.615850e-47 |
| Msa0033980 | Msa0081930 | 0.965942 | 2.903056e-125 | -8.615850e-47 |
| Msa0033980 | Msa0085360 | -0.803557 | 3.292762e-49 | -8.615850e-47 |
| Msa0033980 | Msa0091250 | -0.804287 | 2.322814e-49 | -8.615850e-47 |
| Msa0033980 | Msa0094920 | 0.816875 | 4.412995e-52 | -8.615850e-47 |
| Msa0033980 | Msa0109690 | 0.807562 | 4.757704e-50 | -8.615850e-47 |
| Msa0033980 | Msa0112770 | 0.800539 | 1.374248e-48 | -8.615850e-47 |
| Msa0033980 | Msa0121590 | 0.838165 | 3.380998e-57 | -8.615850e-47 |
| Msa0033980 | Msa0128020 | 0.911463 | 5.910792e-83 | -8.615850e-47 |
| Msa0033980 | Msa0135380 | 0.807249 | 5.544157e-50 | -8.615850e-47 |
| Msa0033980 | Msa0136070 | 0.814472 | 1.514309e-51 | -8.615850e-47 |
| Msa0033980 | Msa0136100 | 0.810170 | 1.316792e-50 | -8.615850e-47 |
| Msa0033980 | Msa0150820 | 0.810350 | 1.204082e-50 | -8.615850e-47 |
| Msa0033980 | Msa0160550 | 0.828910 | 6.913797e-55 | -8.615850e-47 |
| Msa0033980 | Msa0172780 | 0.803155 | 3.989154e-49 | -8.615850e-47 |
| Msa0033980 | Msa0172970 | 0.800159 | 1.642296e-48 | -8.615850e-47 |
| Msa0033980 | Msa0173990 | 0.806171 | 9.365094e-50 | -8.615850e-47 |
| Msa0033980 | Msa0187130 | 0.820992 | 5.116343e-53 | -8.615850e-47 |
| Msa0033980 | Msa0197660 | 0.822855 | 1.894223e-53 | -8.615850e-47 |
| Msa0033980 | Msa0206790 | 0.810466 | 1.136510e-50 | -8.615850e-47 |
| Msa0033980 | Msa0227400 | 0.804755 | 1.855165e-49 | -8.615850e-47 |
| Msa0033980 | Msa0239800 | 0.822825 | 1.925040e-53 | -8.615850e-47 |
| Msa0033980 | Msa0257500 | 0.801144 | 1.034244e-48 | -8.615850e-47 |
| Msa0033980 | Msa0260210 | 0.811359 | 7.283988e-51 | -8.615850e-47 |
| Msa0033980 | Msa0260680 | 0.825818 | 3.808639e-54 | -8.615850e-47 |
| Msa0033980 | Msa0264330 | 0.811682 | 6.196130e-51 | -8.615850e-47 |
| Msa0033980 | Msa0265380 | 0.839502 | 1.525189e-57 | -8.615850e-47 |
| Msa0033980 | Msa0268090 | 0.801687 | 8.005030e-49 | -8.615850e-47 |
| Msa0033980 | Msa0270100 | 0.801152 | 1.030564e-48 | -8.615850e-47 |
| Msa0033980 | Msa0277820 | 0.804378 | 2.223534e-49 | -8.615850e-47 |
| Msa0033980 | Msa0279220 | 0.827433 | 1.569087e-54 | -8.615850e-47 |
| Msa0033980 | Msa0279240 | 0.819690 | 1.017129e-52 | -8.615850e-47 |
| Msa0033980 | Msa0280090 | 0.803572 | 3.269696e-49 | -8.615850e-47 |
| Msa0033980 | Msa0282250 | 0.810377 | 1.188031e-50 | -8.615850e-47 |
| Msa0033980 | Msa0289250 | 0.805513 | 1.287430e-49 | -8.615850e-47 |
| Msa0033980 | Msa0303360 | 0.839664 | 1.384124e-57 | -8.615850e-47 |
| Msa0033980 | Msa0304290 | 0.812905 | 3.349910e-51 | -8.615850e-47 |
| Msa0033980 | Msa0304330 | 0.817379 | 3.400776e-52 | -8.615850e-47 |
| Msa0033980 | Msa0305890 | 0.817267 | 3.603351e-52 | -8.615850e-47 |
| Msa0033980 | Msa0309750 | 0.804626 | 1.973356e-49 | -8.615850e-47 |
| Msa0033980 | Msa0309770 | 0.863193 | 2.963966e-64 | -8.615850e-47 |
| Msa0033980 | Msa0317510 | 0.820168 | 7.908377e-53 | -8.615850e-47 |
| Msa0033980 | Msa0318980 | 0.829854 | 4.077308e-55 | -8.615850e-47 |
| Msa0033980 | Msa0336420 | 0.802252 | 6.126684e-49 | -8.615850e-47 |
| Msa0033980 | Msa0340810 | 0.815306 | 9.889262e-52 | -8.615850e-47 |
| Msa0033980 | Msa0361140 | 0.812802 | 3.529964e-51 | -8.615850e-47 |
| Msa0033980 | Msa0383800 | 0.821674 | 3.561474e-53 | -8.615850e-47 |
| Msa0033980 | Msa0385580 | 0.804701 | 1.903408e-49 | -8.615850e-47 |
| Msa0033980 | Msa0404030 | 0.809295 | 2.030568e-50 | -8.615850e-47 |
| Msa0033980 | Msa0432770 | 0.815804 | 7.660622e-52 | -8.615850e-47 |
| Msa0033980 | Msa0434180 | 0.807557 | 4.769687e-50 | -8.615850e-47 |
| Msa0033980 | Msa0443920 | 0.809222 | 2.105379e-50 | -8.615850e-47 |
| Msa0033980 | Msa0467900 | -0.800679 | 1.287024e-48 | -8.615850e-47 |
| Msa0033980 | Msa0479970 | 0.804906 | 1.725473e-49 | -8.615850e-47 |
| Msa0033980 | Msa0480000 | 0.821025 | 5.027179e-53 | -8.615850e-47 |
| Msa0033980 | Msa0481530 | 0.800831 | 1.198288e-48 | -8.615850e-47 |
| Msa0033980 | Msa0484780 | 0.812462 | 4.188602e-51 | -8.615850e-47 |
| Msa0033980 | Msa0511490 | 0.807070 | 6.047229e-50 | -8.615850e-47 |
| Msa0033980 | Msa0515010 | 0.802861 | 4.588767e-49 | -8.615850e-47 |
| Msa0033980 | Msa0522070 | 0.800892 | 1.164510e-48 | -8.615850e-47 |
| Msa0033980 | Msa0529890 | 0.806927 | 6.484244e-50 | -8.615850e-47 |
| Msa0033980 | Msa0542090 | 0.804844 | 1.777030e-49 | -8.615850e-47 |
| Msa0033980 | Msa0542130 | 0.803106 | 4.082958e-49 | -8.615850e-47 |
| Msa0033980 | Msa0547360 | 0.811079 | 8.375275e-51 | -8.615850e-47 |
| Msa0033980 | Msa0555450 | 0.814737 | 1.322623e-51 | -8.615850e-47 |
| Msa0033980 | Msa0558690 | 0.808177 | 3.520993e-50 | -8.615850e-47 |
| Msa0033980 | Msa0569500 | 0.802525 | 5.382040e-49 | -8.615850e-47 |
| Msa0033980 | Msa0577500 | 0.803394 | 3.560303e-49 | -8.615850e-47 |
| Msa0033980 | Msa0584860 | 0.833534 | 5.047715e-56 | -8.615850e-47 |
| Msa0033980 | Msa0593650 | 0.803329 | 3.672338e-49 | -8.615850e-47 |
| Msa0033980 | Msa0610430 | 0.832472 | 9.269942e-56 | -8.615850e-47 |
| Msa0033980 | Msa0621490 | 0.804615 | 1.983832e-49 | -8.615850e-47 |
| Msa0033980 | Msa0621590 | 0.807765 | 4.307885e-50 | -8.615850e-47 |
| Msa0033980 | Msa0623080 | 0.801112 | 1.049721e-48 | -8.615850e-47 |
| Msa0033980 | Msa0625720 | 0.809070 | 2.268960e-50 | -8.615850e-47 |
| Msa0033980 | Msa0633840 | 0.817940 | 2.540933e-52 | -8.615850e-47 |
| Msa0033980 | Msa0649350 | 0.806489 | 8.026331e-50 | -8.615850e-47 |
| Msa0033980 | Msa0657970 | 0.803168 | 3.964901e-49 | -8.615850e-47 |
| Msa0033980 | Msa0661190 | -0.815224 | 1.031311e-51 | -8.615850e-47 |
| Msa0033980 | Msa0672210 | 0.803412 | 3.530165e-49 | -8.615850e-47 |
| Msa0033980 | Msa0677270 | 0.803196 | 3.912367e-49 | -8.615850e-47 |
| Msa0033980 | Msa0682090 | 0.801842 | 7.438937e-49 | -8.615850e-47 |
| Msa0033980 | Msa0682140 | 0.801249 | 9.841699e-49 | -8.615850e-47 |
| Msa0033980 | Msa0682900 | 0.806354 | 8.569483e-50 | -8.615850e-47 |
| Msa0033980 | Msa0685140 | 0.800387 | 1.475927e-48 | -8.615850e-47 |
| Msa0033980 | Msa0691900 | 0.823208 | 1.567587e-53 | -8.615850e-47 |
| Msa0033980 | Msa0692830 | 0.820729 | 5.882274e-53 | -8.615850e-47 |
| Msa0033980 | Msa0692950 | 0.813487 | 2.497479e-51 | -8.615850e-47 |
| Msa0033980 | Msa0693380 | 0.812434 | 4.248357e-51 | -8.615850e-47 |
| Msa0033980 | Msa0701920 | 0.805013 | 1.638807e-49 | -8.615850e-47 |
| Msa0033980 | Msa0708520 | 0.801875 | 7.326176e-49 | -8.615850e-47 |
| Msa0033980 | Msa0711780 | 0.803062 | 4.170977e-49 | -8.615850e-47 |
| Msa0033980 | Msa0716840 | 0.823893 | 1.084041e-53 | -8.615850e-47 |
| Msa0033980 | Msa0745790 | 0.826931 | 2.069042e-54 | -8.615850e-47 |
| Msa0033980 | Msa0750430 | 0.823142 | 1.624109e-53 | -8.615850e-47 |
| Msa0033980 | Msa0770200 | 0.827235 | 1.749854e-54 | -8.615850e-47 |
| Msa0033980 | Msa0772480 | 0.820464 | 6.764472e-53 | -8.615850e-47 |
| Msa0033980 | Msa0773840 | 0.809565 | 1.777109e-50 | -8.615850e-47 |
| Msa0033980 | Msa0788710 | 0.808614 | 2.840327e-50 | -8.615850e-47 |
| Msa0033980 | Msa0790510 | 0.816868 | 4.428849e-52 | -8.615850e-47 |
| Msa0033980 | Msa0794670 | 0.824890 | 6.316566e-54 | -8.615850e-47 |
| Msa0033980 | Msa0795920 | 0.807329 | 5.329659e-50 | -8.615850e-47 |
| Msa0033980 | Msa0796700 | 0.814508 | 1.486798e-51 | -8.615850e-47 |
| Msa0033980 | Msa0798440 | 0.825686 | 4.094170e-54 | -8.615850e-47 |
| Msa0033980 | Msa0808270 | 0.819793 | 9.635441e-53 | -8.615850e-47 |
| Msa0033980 | Msa0816700 | 0.807643 | 4.572670e-50 | -8.615850e-47 |
| Msa0033980 | Msa0827040 | 0.810260 | 1.259006e-50 | -8.615850e-47 |
| Msa0033980 | Msa0835310 | 0.800776 | 1.229568e-48 | -8.615850e-47 |
| Msa0033980 | Msa0850960 | 0.803986 | 2.682602e-49 | -8.615850e-47 |
| Msa0033980 | Msa0864250 | 0.800547 | 1.369212e-48 | -8.615850e-47 |
| Msa0033980 | Msa0876200 | 0.811700 | 6.139210e-51 | -8.615850e-47 |
| Msa0033980 | Msa0909000 | -0.805840 | 1.099306e-49 | -8.615850e-47 |
| Msa0033980 | Msa0935670 | 0.805988 | 1.023065e-49 | -8.615850e-47 |
| Msa0033980 | Msa0942070 | 0.824731 | 6.886451e-54 | -8.615850e-47 |
| Msa0033980 | Msa0944190 | 0.804410 | 2.189395e-49 | -8.615850e-47 |
| Msa0033980 | Msa0945440 | 0.801249 | 9.844625e-49 | -8.615850e-47 |
| Msa0033980 | Msa0945970 | 0.800487 | 1.408687e-48 | -8.615850e-47 |
| Msa0033980 | Msa0999970 | 0.805762 | 1.141415e-49 | -8.615850e-47 |
| Msa0033980 | Msa1012830 | 0.809111 | 2.223805e-50 | -8.615850e-47 |
| Msa0033980 | Msa1021540 | 0.826175 | 3.132789e-54 | -8.615850e-47 |
| Msa0033980 | Msa1046020 | 0.808406 | 3.146316e-50 | -8.615850e-47 |
| Msa0033980 | Msa1046060 | 0.805216 | 1.485426e-49 | -8.615850e-47 |
| Msa0033980 | Msa1051200 | 0.815182 | 1.053769e-51 | -8.615850e-47 |
| Msa0033980 | Msa1061680 | 0.822725 | 2.031378e-53 | -8.615850e-47 |
| Msa0033980 | Msa1082500 | 0.820424 | 6.908412e-53 | -8.615850e-47 |
| Msa0033980 | Msa1089020 | 0.804133 | 2.499906e-49 | -8.615850e-47 |
| Msa0033980 | Msa1089040 | 0.822668 | 2.094458e-53 | -8.615850e-47 |
| Msa0033980 | Msa1090260 | 0.810197 | 1.299035e-50 | -8.615850e-47 |
| Msa0033980 | Msa1115430 | 0.816459 | 5.471034e-52 | -8.615850e-47 |
| Msa0033980 | Msa1154280 | 0.804672 | 1.930082e-49 | -8.615850e-47 |
| Msa0033980 | Msa1163540 | 0.807961 | 3.913211e-50 | -8.615850e-47 |
| Msa0033980 | Msa1173140 | 0.825086 | 5.678392e-54 | -8.615850e-47 |
| Msa0033980 | Msa1190890 | -0.800438 | 1.441149e-48 | -8.615850e-47 |
| Msa0033980 | Msa1203250 | 0.822982 | 1.770289e-53 | -8.615850e-47 |
| Msa0033980 | Msa1217470 | 0.820646 | 6.146296e-53 | -8.615850e-47 |
| Msa0033980 | Msa1219810 | 0.803009 | 4.276252e-49 | -8.615850e-47 |
| Msa0033980 | Msa1224810 | 0.820920 | 5.315229e-53 | -8.615850e-47 |
| Msa0033980 | Msa1225370 | 0.801020 | 1.096559e-48 | -8.615850e-47 |
| Msa0033980 | Msa1240180 | 0.843623 | 1.250505e-58 | -8.615850e-47 |
| Msa0033980 | Msa1240210 | 0.833396 | 5.464592e-56 | -8.615850e-47 |
| Msa0033980 | Msa1250890 | 0.810068 | 1.385467e-50 | -8.615850e-47 |
| Msa0033980 | Msa1263020 | 0.817385 | 3.389503e-52 | -8.615850e-47 |
| Msa0033980 | Msa1267060 | 0.802747 | 4.844756e-49 | -8.615850e-47 |
| Msa0033980 | Msa1287460 | 0.800658 | 1.299900e-48 | -8.615850e-47 |
| Msa0033980 | Msa1306430 | 0.800821 | 1.204200e-48 | -8.615850e-47 |
| Msa0033980 | Msa1316780 | 0.809459 | 1.872951e-50 | -8.615850e-47 |
| Msa0033980 | Msa1316830 | 0.800923 | 1.147636e-48 | -8.615850e-47 |
| Msa0033980 | Msa1320620 | 0.830513 | 2.814680e-55 | -8.615850e-47 |
| Msa0033980 | Msa1328700 | 0.808488 | 3.022071e-50 | -8.615850e-47 |
| Msa0033980 | Msa1332870 | -0.801116 | 1.048163e-48 | -8.615850e-47 |
| Msa0033980 | Msa1333410 | 0.843608 | 1.262320e-58 | -8.615850e-47 |
| Msa0033980 | Msa1338200 | 0.802541 | 5.342820e-49 | -8.615850e-47 |
| Msa0033980 | Msa1340260 | 0.850375 | 1.768734e-60 | -8.615850e-47 |
| Msa0033980 | Msa1340270 | 0.815043 | 1.131745e-51 | -8.615850e-47 |
| Msa0033980 | Msa1340650 | 0.808186 | 3.505383e-50 | -8.615850e-47 |
| Msa0033980 | Msa1348560 | 0.810157 | 1.325536e-50 | -8.615850e-47 |
| Msa0033980 | Msa1351730 | 0.802302 | 5.984188e-49 | -8.615850e-47 |
| Msa0033980 | Msa1371430 | 0.822565 | 2.213493e-53 | -8.615850e-47 |
| Msa0033980 | Msa1385670 | 0.800151 | 1.648417e-48 | -8.615850e-47 |
| Msa0033980 | Msa1400190 | 0.922522 | 8.818220e-89 | -8.615850e-47 |
| Msa0033980 | Msa1410100 | 0.810013 | 1.423372e-50 | -8.615850e-47 |
| Msa0033980 | Msa1411100 | 0.827339 | 1.652402e-54 | -8.615850e-47 |
| Msa0033980 | Msa1415640 | 0.813170 | 2.930819e-51 | -8.615850e-47 |
| Msa0033980 | Msa1416150 | 0.805554 | 1.262249e-49 | -8.615850e-47 |
| Msa0033980 | Msa1424750 | 0.808611 | 2.845146e-50 | -8.615850e-47 |
| Msa0033980 | Msa1430680 | 0.808705 | 2.716374e-50 | -8.615850e-47 |
| Msa0033980 | Msa1435370 | 0.846294 | 2.376904e-59 | -8.615850e-47 |
| Msa0033980 | Msa1438700 | 0.803296 | 3.730662e-49 | -8.615850e-47 |
| Msa0033980 | Msa1440910 | 0.836833 | 7.422750e-57 | -8.615850e-47 |
| Msa0033980 | Msa1442700 | 0.816813 | 4.557711e-52 | -8.615850e-47 |
| Msa0033980 | Msa1443850 | 0.805069 | 1.594941e-49 | -8.615850e-47 |
| Msa0033980 | Msa1444310 | 0.804469 | 2.128424e-49 | -8.615850e-47 |
| Msa0033980 | Msa1463670 | 0.807865 | 4.102232e-50 | -8.615850e-47 |
| Msa0033980 | Msa1466300 | 0.814303 | 1.650557e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033980 | MtrunA17_Chr8g0345501 | 65.169 | 89 | 31 | 0 | 24 | 112 | 408 | 496 | 7.13e-34 | 123 |
| Msa0033980 | MtrunA17_Chr2g0313001 | 72.500 | 40 | 11 | 0 | 7 | 46 | 1 | 40 | 2.43e-13 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTATCTCGAGCCAAATT+TGG | 0.138676 | 1_1:+61856558 | None:intergenic |
| TTACCTCTTTATCCCAAATT+TGG | 0.184345 | 1_1:-61856571 | None:intergenic |
| CCATCACCATCTGGAATTAT+TGG | 0.275118 | 1_1:+61857700 | None:intergenic |
| AAGAAATTGCTCACATTATA+TGG | 0.286562 | 1_1:-61857163 | Msa0033980:CDS |
| TGATTTCTTTGACTCATTCA+TGG | 0.333269 | 1_1:-61857084 | Msa0033980:intron |
| CCGTCATGGAAGCAATTATC+AGG | 0.356730 | 1_1:-61857119 | Msa0033980:CDS |
| AACTATCTCGAGCCAAATTT+GGG | 0.363047 | 1_1:+61856559 | None:intergenic |
| GTAGATTGAGTCAAAGTTGA+AGG | 0.423072 | 1_1:-61856859 | Msa0033980:exon |
| ACTTGTCATGATGCATGTTA+TGG | 0.428964 | 1_1:+61856761 | None:intergenic |
| AATGTGTACATTTCAAGTTA+TGG | 0.444448 | 1_1:-61857782 | Msa0033980:CDS |
| CAAACTCACCCATCACCATC+TGG | 0.453372 | 1_1:+61857691 | None:intergenic |
| CTCAGTTGATGCAAGAAGTT+CGG | 0.458850 | 1_1:-61856886 | Msa0033980:CDS |
| TACAAGGCTTAAGCAACAAT+TGG | 0.471347 | 1_1:-61856829 | Msa0033980:three_prime_UTR |
| TACATGGCAACCAGAGCATA+AGG | 0.485592 | 1_1:-61856954 | Msa0033980:CDS |
| CTAACATGGCTAGCTGAAGA+TGG | 0.497267 | 1_1:+61857748 | None:intergenic |
| TGCACATAGTAGTTCAGTTG+TGG | 0.523431 | 1_1:-61857825 | Msa0033980:five_prime_UTR |
| CCAATAATTCCAGATGGTGA+TGG | 0.531511 | 1_1:-61857700 | Msa0033980:CDS |
| GAGCCAAATTTGGGATAAAG+AGG | 0.548288 | 1_1:+61856568 | None:intergenic |
| CAATAATTCCAGATGGTGAT+GGG | 0.552654 | 1_1:-61857699 | Msa0033980:intron |
| CAACGGTGTCTCTACTAACA+TGG | 0.557176 | 1_1:+61857734 | None:intergenic |
| CCTGATAATTGCTTCCATGA+CGG | 0.572248 | 1_1:+61857119 | None:intergenic |
| CATAGTAGTTCAGTTGTGGT+TGG | 0.585520 | 1_1:-61857821 | Msa0033980:five_prime_UTR |
| TAGAAGAGGGAAAACCGTCA+TGG | 0.601838 | 1_1:-61857133 | Msa0033980:CDS |
| TATATGGTCTCAATTAGAAG+AGG | 0.602911 | 1_1:-61857147 | Msa0033980:CDS |
| TTTCTTTAACTACCAATGTG+TGG | 0.607987 | 1_1:+61857180 | None:intergenic |
| AAAATACCAATAATTCCAGA+TGG | 0.610541 | 1_1:-61857706 | Msa0033980:CDS |
| AGTTGAAGGAGGCAACTACA+AGG | 0.610652 | 1_1:-61856845 | Msa0033980:exon |
| ATATGGTCTCAATTAGAAGA+GGG | 0.627134 | 1_1:-61857146 | Msa0033980:CDS |
| CTTGAAATGTACACATTGCG+AGG | 0.634227 | 1_1:+61857788 | None:intergenic |
| CAGGTTTGATCACCACACAT+TGG | 0.634316 | 1_1:-61857192 | Msa0033980:CDS |
| GATTGAGTCAAAGTTGAAGG+AGG | 0.637853 | 1_1:-61856856 | Msa0033980:exon |
| ATGAGTCAAAGAAATCATCT+CGG | 0.652827 | 1_1:+61857090 | None:intergenic |
| CATGTTAGTAGAGACACCGT+TGG | 0.707519 | 1_1:-61857733 | Msa0033980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCAAATAATCATTATTATAT+GGG | + | chr1_1:61856800-61856819 | None:intergenic | 15.0% |
| !! | TTATTTGGCTAATATAAATA+TGG | - | chr1_1:61856812-61856831 | Msa0033980:three_prime_UTR | 15.0% |
| !!! | ATTTTGAATTAATATCTCTA+AGG | - | chr1_1:61857127-61857146 | Msa0033980:CDS | 15.0% |
| !! | CCAAATAATCATTATTATAT+GGG | + | chr1_1:61856800-61856819 | None:intergenic | 15.0% |
| !! | TTATTTGGCTAATATAAATA+TGG | - | chr1_1:61856812-61856831 | Msa0033980:three_prime_UTR | 15.0% |
| !!! | ATTTTGAATTAATATCTCTA+AGG | - | chr1_1:61857127-61857146 | Msa0033980:CDS | 15.0% |
| !! | CCCATATAATAATGATTATT+TGG | - | chr1_1:61856797-61856816 | Msa0033980:three_prime_UTR | 20.0% |
| !! | GCCAAATAATCATTATTATA+TGG | + | chr1_1:61856801-61856820 | None:intergenic | 20.0% |
| !! | TATTACAGAAAAAGTTTACA+TGG | - | chr1_1:61857490-61857509 | Msa0033980:intron | 20.0% |
| !! | CCCATATAATAATGATTATT+TGG | - | chr1_1:61856797-61856816 | Msa0033980:three_prime_UTR | 20.0% |
| !! | GCCAAATAATCATTATTATA+TGG | + | chr1_1:61856801-61856820 | None:intergenic | 20.0% |
| !! | TATTACAGAAAAAGTTTACA+TGG | - | chr1_1:61857490-61857509 | Msa0033980:intron | 20.0% |
| !!! | AATGTGTACATTTCAAGTTA+TGG | - | chr1_1:61856678-61856697 | Msa0033980:three_prime_UTR | 25.0% |
| !!! | TATTGGTATTTTAGTACCAA+CGG | + | chr1_1:61856746-61856765 | None:intergenic | 25.0% |
| ! | AAAATACCAATAATTCCAGA+TGG | - | chr1_1:61856754-61856773 | Msa0033980:three_prime_UTR | 25.0% |
| !! | TTGTGGTATTATGATTTTAG+TGG | - | chr1_1:61856895-61856914 | Msa0033980:CDS | 25.0% |
| !! | TTTTCGTGTACATTATATTC+TGG | - | chr1_1:61856944-61856963 | Msa0033980:CDS | 25.0% |
| !!! | AATTAATATCTCTAAGGCTT+TGG | - | chr1_1:61857133-61857152 | Msa0033980:CDS | 25.0% |
| !!! | GTTTTTTCCTGAGAAAATAT+TGG | - | chr1_1:61857171-61857190 | Msa0033980:CDS | 25.0% |
| !!! | TTGTTTGAAACACATTTTTC+AGG | - | chr1_1:61857249-61857268 | Msa0033980:intron | 25.0% |
| ! | AAGAAATTGCTCACATTATA+TGG | - | chr1_1:61857297-61857316 | Msa0033980:intron | 25.0% |
| !!! | TTACTTAATCTGTTCTAAAG+AGG | + | chr1_1:61857440-61857459 | None:intergenic | 25.0% |
| !!! | TGCGAAAAAACTTTGAAATA+AGG | - | chr1_1:61857535-61857554 | Msa0033980:intron | 25.0% |
| !!! | GCGAAAAAACTTTGAAATAA+GGG | - | chr1_1:61857536-61857555 | Msa0033980:intron | 25.0% |
| !!! | CGAAAAAACTTTGAAATAAG+GGG | - | chr1_1:61857537-61857556 | Msa0033980:intron | 25.0% |
| ! | AGCATATGCACAAAAAAAAA+TGG | + | chr1_1:61857856-61857875 | None:intergenic | 25.0% |
| !!! | TTTTGTGCATATGCTATTTT+TGG | - | chr1_1:61857861-61857880 | Msa0033980:five_prime_UTR | 25.0% |
| !!! | AATGTGTACATTTCAAGTTA+TGG | - | chr1_1:61856678-61856697 | Msa0033980:three_prime_UTR | 25.0% |
| !!! | TATTGGTATTTTAGTACCAA+CGG | + | chr1_1:61856746-61856765 | None:intergenic | 25.0% |
| ! | AAAATACCAATAATTCCAGA+TGG | - | chr1_1:61856754-61856773 | Msa0033980:three_prime_UTR | 25.0% |
| !! | TTGTGGTATTATGATTTTAG+TGG | - | chr1_1:61856895-61856914 | Msa0033980:CDS | 25.0% |
| !! | TTTTCGTGTACATTATATTC+TGG | - | chr1_1:61856944-61856963 | Msa0033980:CDS | 25.0% |
| !!! | AATTAATATCTCTAAGGCTT+TGG | - | chr1_1:61857133-61857152 | Msa0033980:CDS | 25.0% |
| !!! | GTTTTTTCCTGAGAAAATAT+TGG | - | chr1_1:61857171-61857190 | Msa0033980:CDS | 25.0% |
| !!! | TTGTTTGAAACACATTTTTC+AGG | - | chr1_1:61857249-61857268 | Msa0033980:intron | 25.0% |
| ! | AAGAAATTGCTCACATTATA+TGG | - | chr1_1:61857297-61857316 | Msa0033980:intron | 25.0% |
| !!! | TTACTTAATCTGTTCTAAAG+AGG | + | chr1_1:61857440-61857459 | None:intergenic | 25.0% |
| !!! | TGCGAAAAAACTTTGAAATA+AGG | - | chr1_1:61857535-61857554 | Msa0033980:intron | 25.0% |
| !!! | GCGAAAAAACTTTGAAATAA+GGG | - | chr1_1:61857536-61857555 | Msa0033980:intron | 25.0% |
| !!! | CGAAAAAACTTTGAAATAAG+GGG | - | chr1_1:61857537-61857556 | Msa0033980:intron | 25.0% |
| ! | AGCATATGCACAAAAAAAAA+TGG | + | chr1_1:61857856-61857875 | None:intergenic | 25.0% |
| !!! | TTTTGTGCATATGCTATTTT+TGG | - | chr1_1:61857861-61857880 | Msa0033980:five_prime_UTR | 25.0% |
| ! | GATTCTGTTAACTTTCCTTT+TGG | - | chr1_1:61856844-61856863 | Msa0033980:exon | 30.0% |
| ! | TTTTCCTGAGAAAATATTGG+TGG | - | chr1_1:61857174-61857193 | Msa0033980:CDS | 30.0% |
| CAAGTAAAGTCTTAACTCAA+AGG | + | chr1_1:61857232-61857251 | None:intergenic | 30.0% | |
| TTTCTTTAACTACCAATGTG+TGG | + | chr1_1:61857283-61857302 | None:intergenic | 30.0% | |
| TATATGGTCTCAATTAGAAG+AGG | - | chr1_1:61857313-61857332 | Msa0033980:intron | 30.0% | |
| ATATGGTCTCAATTAGAAGA+GGG | - | chr1_1:61857314-61857333 | Msa0033980:intron | 30.0% | |
| ATGAGTCAAAGAAATCATCT+CGG | + | chr1_1:61857373-61857392 | None:intergenic | 30.0% | |
| TGATTTCTTTGACTCATTCA+TGG | - | chr1_1:61857376-61857395 | Msa0033980:intron | 30.0% | |
| ! | GATTCTGTTAACTTTCCTTT+TGG | - | chr1_1:61856844-61856863 | Msa0033980:exon | 30.0% |
| ! | TTTTCCTGAGAAAATATTGG+TGG | - | chr1_1:61857174-61857193 | Msa0033980:CDS | 30.0% |
| CAAGTAAAGTCTTAACTCAA+AGG | + | chr1_1:61857232-61857251 | None:intergenic | 30.0% | |
| TTTCTTTAACTACCAATGTG+TGG | + | chr1_1:61857283-61857302 | None:intergenic | 30.0% | |
| TATATGGTCTCAATTAGAAG+AGG | - | chr1_1:61857313-61857332 | Msa0033980:intron | 30.0% | |
| ATATGGTCTCAATTAGAAGA+GGG | - | chr1_1:61857314-61857333 | Msa0033980:intron | 30.0% | |
| ATGAGTCAAAGAAATCATCT+CGG | + | chr1_1:61857373-61857392 | None:intergenic | 30.0% | |
| TGATTTCTTTGACTCATTCA+TGG | - | chr1_1:61857376-61857395 | Msa0033980:intron | 30.0% | |
| CAATAATTCCAGATGGTGAT+GGG | - | chr1_1:61856761-61856780 | Msa0033980:three_prime_UTR | 35.0% | |
| ! | GCATTGTTACTTGATCCAAA+AGG | + | chr1_1:61856862-61856881 | None:intergenic | 35.0% |
| GTTGCTGAACATGCTATATA+TGG | - | chr1_1:61857030-61857049 | Msa0033980:intron | 35.0% | |
| GTAGATTGAGTCAAAGTTGA+AGG | - | chr1_1:61857601-61857620 | Msa0033980:intron | 35.0% | |
| TACAAGGCTTAAGCAACAAT+TGG | - | chr1_1:61857631-61857650 | Msa0033980:intron | 35.0% | |
| ACTTGTCATGATGCATGTTA+TGG | + | chr1_1:61857702-61857721 | None:intergenic | 35.0% | |
| CAATAATTCCAGATGGTGAT+GGG | - | chr1_1:61856761-61856780 | Msa0033980:three_prime_UTR | 35.0% | |
| ! | GCATTGTTACTTGATCCAAA+AGG | + | chr1_1:61856862-61856881 | None:intergenic | 35.0% |
| GTTGCTGAACATGCTATATA+TGG | - | chr1_1:61857030-61857049 | Msa0033980:intron | 35.0% | |
| GTAGATTGAGTCAAAGTTGA+AGG | - | chr1_1:61857601-61857620 | Msa0033980:intron | 35.0% | |
| TACAAGGCTTAAGCAACAAT+TGG | - | chr1_1:61857631-61857650 | Msa0033980:intron | 35.0% | |
| ACTTGTCATGATGCATGTTA+TGG | + | chr1_1:61857702-61857721 | None:intergenic | 35.0% | |
| TGCACATAGTAGTTCAGTTG+TGG | - | chr1_1:61856635-61856654 | Msa0033980:three_prime_UTR | 40.0% | |
| CATAGTAGTTCAGTTGTGGT+TGG | - | chr1_1:61856639-61856658 | Msa0033980:three_prime_UTR | 40.0% | |
| CTTGAAATGTACACATTGCG+AGG | + | chr1_1:61856675-61856694 | None:intergenic | 40.0% | |
| ! | CCATCACCATCTGGAATTAT+TGG | + | chr1_1:61856763-61856782 | None:intergenic | 40.0% |
| CCAATAATTCCAGATGGTGA+TGG | - | chr1_1:61856760-61856779 | Msa0033980:three_prime_UTR | 40.0% | |
| !! | ATCTCTAAGGCTTTGGAACA+TGG | - | chr1_1:61857140-61857159 | Msa0033980:CDS | 40.0% |
| ! | TGCACCACCAATATTTTCTC+AGG | + | chr1_1:61857181-61857200 | None:intergenic | 40.0% |
| GTGCAAGTAGTTAGTTGTGT+TGG | - | chr1_1:61857196-61857215 | Msa0033980:intron | 40.0% | |
| CCTGATAATTGCTTCCATGA+CGG | + | chr1_1:61857344-61857363 | None:intergenic | 40.0% | |
| ! | CTCAGTTGATGCAAGAAGTT+CGG | - | chr1_1:61857574-61857593 | Msa0033980:intron | 40.0% |
| GATTGAGTCAAAGTTGAAGG+AGG | - | chr1_1:61857604-61857623 | Msa0033980:intron | 40.0% | |
| TGCACATAGTAGTTCAGTTG+TGG | - | chr1_1:61856635-61856654 | Msa0033980:three_prime_UTR | 40.0% | |
| CATAGTAGTTCAGTTGTGGT+TGG | - | chr1_1:61856639-61856658 | Msa0033980:three_prime_UTR | 40.0% | |
| CTTGAAATGTACACATTGCG+AGG | + | chr1_1:61856675-61856694 | None:intergenic | 40.0% | |
| ! | CCATCACCATCTGGAATTAT+TGG | + | chr1_1:61856763-61856782 | None:intergenic | 40.0% |
| CCAATAATTCCAGATGGTGA+TGG | - | chr1_1:61856760-61856779 | Msa0033980:three_prime_UTR | 40.0% | |
| !! | ATCTCTAAGGCTTTGGAACA+TGG | - | chr1_1:61857140-61857159 | Msa0033980:CDS | 40.0% |
| ! | TGCACCACCAATATTTTCTC+AGG | + | chr1_1:61857181-61857200 | None:intergenic | 40.0% |
| GTGCAAGTAGTTAGTTGTGT+TGG | - | chr1_1:61857196-61857215 | Msa0033980:intron | 40.0% | |
| CCTGATAATTGCTTCCATGA+CGG | + | chr1_1:61857344-61857363 | None:intergenic | 40.0% | |
| ! | CTCAGTTGATGCAAGAAGTT+CGG | - | chr1_1:61857574-61857593 | Msa0033980:intron | 40.0% |
| GATTGAGTCAAAGTTGAAGG+AGG | - | chr1_1:61857604-61857623 | Msa0033980:intron | 40.0% | |
| ! | CTAACATGGCTAGCTGAAGA+TGG | + | chr1_1:61856715-61856734 | None:intergenic | 45.0% |
| CAACGGTGTCTCTACTAACA+TGG | + | chr1_1:61856729-61856748 | None:intergenic | 45.0% | |
| CATGTTAGTAGAGACACCGT+TGG | - | chr1_1:61856727-61856746 | Msa0033980:three_prime_UTR | 45.0% | |
| ATGCAAGACTGTTGTGCTTG+TGG | - | chr1_1:61856878-61856897 | Msa0033980:CDS | 45.0% | |
| !! | CTAAGGCTTTGGAACATGGT+TGG | - | chr1_1:61857144-61857163 | Msa0033980:CDS | 45.0% |
| CAGGTTTGATCACCACACAT+TGG | - | chr1_1:61857268-61857287 | Msa0033980:intron | 45.0% | |
| TAGAAGAGGGAAAACCGTCA+TGG | - | chr1_1:61857327-61857346 | Msa0033980:intron | 45.0% | |
| CCGTCATGGAAGCAATTATC+AGG | - | chr1_1:61857341-61857360 | Msa0033980:intron | 45.0% | |
| TACATGGCAACCAGAGCATA+AGG | - | chr1_1:61857506-61857525 | Msa0033980:intron | 45.0% | |
| ! | CGCACTTTTACCTTATGCTC+TGG | + | chr1_1:61857519-61857538 | None:intergenic | 45.0% |
| AGTTGAAGGAGGCAACTACA+AGG | - | chr1_1:61857615-61857634 | Msa0033980:intron | 45.0% | |
| ! | CTAACATGGCTAGCTGAAGA+TGG | + | chr1_1:61856715-61856734 | None:intergenic | 45.0% |
| CAACGGTGTCTCTACTAACA+TGG | + | chr1_1:61856729-61856748 | None:intergenic | 45.0% | |
| CATGTTAGTAGAGACACCGT+TGG | - | chr1_1:61856727-61856746 | Msa0033980:three_prime_UTR | 45.0% | |
| ATGCAAGACTGTTGTGCTTG+TGG | - | chr1_1:61856878-61856897 | Msa0033980:CDS | 45.0% | |
| !! | CTAAGGCTTTGGAACATGGT+TGG | - | chr1_1:61857144-61857163 | Msa0033980:CDS | 45.0% |
| CAGGTTTGATCACCACACAT+TGG | - | chr1_1:61857268-61857287 | Msa0033980:intron | 45.0% | |
| TAGAAGAGGGAAAACCGTCA+TGG | - | chr1_1:61857327-61857346 | Msa0033980:intron | 45.0% | |
| CCGTCATGGAAGCAATTATC+AGG | - | chr1_1:61857341-61857360 | Msa0033980:intron | 45.0% | |
| TACATGGCAACCAGAGCATA+AGG | - | chr1_1:61857506-61857525 | Msa0033980:intron | 45.0% | |
| ! | CGCACTTTTACCTTATGCTC+TGG | + | chr1_1:61857519-61857538 | None:intergenic | 45.0% |
| AGTTGAAGGAGGCAACTACA+AGG | - | chr1_1:61857615-61857634 | Msa0033980:intron | 45.0% | |
| CAAACTCACCCATCACCATC+TGG | + | chr1_1:61856772-61856791 | None:intergenic | 50.0% | |
| CAAACTCACCCATCACCATC+TGG | + | chr1_1:61856772-61856791 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 61856573 | 61857909 | 61856573 | ID=Msa0033980;Name=Msa0033980 |
| chr1_1 | mRNA | 61856573 | 61857909 | 61856573 | ID=Msa0033980-mRNA-1;Parent=Msa0033980;Name=Msa0033980-mRNA-1;_AED=0.28;_eAED=0.28;_QI=106|1|1|1|1|1|3|289|117 |
| chr1_1 | exon | 61856573 | 61856984 | 61856573 | ID=Msa0033980-mRNA-1:exon:19397;Parent=Msa0033980-mRNA-1 |
| chr1_1 | exon | 61857085 | 61857211 | 61857085 | ID=Msa0033980-mRNA-1:exon:19396;Parent=Msa0033980-mRNA-1 |
| chr1_1 | exon | 61857700 | 61857909 | 61857700 | ID=Msa0033980-mRNA-1:exon:19395;Parent=Msa0033980-mRNA-1 |
| chr1_1 | five_prime_UTR | 61857804 | 61857909 | 61857804 | ID=Msa0033980-mRNA-1:five_prime_utr;Parent=Msa0033980-mRNA-1 |
| chr1_1 | CDS | 61857700 | 61857803 | 61857700 | ID=Msa0033980-mRNA-1:cds;Parent=Msa0033980-mRNA-1 |
| chr1_1 | CDS | 61857085 | 61857211 | 61857085 | ID=Msa0033980-mRNA-1:cds;Parent=Msa0033980-mRNA-1 |
| chr1_1 | CDS | 61856862 | 61856984 | 61856862 | ID=Msa0033980-mRNA-1:cds;Parent=Msa0033980-mRNA-1 |
| chr1_1 | three_prime_UTR | 61856573 | 61856861 | 61856573 | ID=Msa0033980-mRNA-1:three_prime_utr;Parent=Msa0033980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
