Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831520 | AES99811.2 | 80.193 | 207 | 5 | 2 | 1 | 173 | 1 | 205 | 1.35e-109 | 331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831520 | sp|Q67ZU1|LIP2_ARATH | 35.470 | 234 | 106 | 4 | 5 | 193 | 9 | 242 | 4.43e-44 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831520 | G7KH68 | 80.193 | 207 | 5 | 2 | 1 | 173 | 1 | 205 | 6.46e-110 | 331 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040450 | Msa0831520 | 0.804651 | 1.950379e-49 | -8.615850e-47 |
| Msa0054480 | Msa0831520 | 0.810064 | 1.388190e-50 | -8.615850e-47 |
| Msa0610430 | Msa0831520 | 0.805480 | 1.307985e-49 | -8.615850e-47 |
| Msa0625720 | Msa0831520 | 0.808186 | 3.505297e-50 | -8.615850e-47 |
| Msa0663390 | Msa0831520 | 0.804441 | 2.157213e-49 | -8.615850e-47 |
| Msa0673460 | Msa0831520 | 0.806151 | 9.453680e-50 | -8.615850e-47 |
| Msa0691380 | Msa0831520 | 0.807743 | 4.353939e-50 | -8.615850e-47 |
| Msa0743950 | Msa0831520 | 0.822489 | 2.304554e-53 | -8.615850e-47 |
| Msa0762970 | Msa0831520 | 0.803027 | 4.240045e-49 | -8.615850e-47 |
| Msa0769920 | Msa0831520 | 0.827102 | 1.882895e-54 | -8.615850e-47 |
| Msa0793810 | Msa0831520 | 0.814248 | 1.696608e-51 | -8.615850e-47 |
| Msa0831520 | Msa0864250 | 0.816243 | 6.115044e-52 | -8.615850e-47 |
| Msa0831520 | Msa0973600 | 0.807119 | 5.906839e-50 | -8.615850e-47 |
| Msa0831520 | Msa1061680 | 0.803210 | 3.887227e-49 | -8.615850e-47 |
| Msa0831520 | Msa1082500 | 0.800493 | 1.404805e-48 | -8.615850e-47 |
| Msa0831520 | Msa1186950 | -0.803243 | 3.824857e-49 | -8.615850e-47 |
| Msa0831520 | Msa1287460 | 0.806264 | 8.948901e-50 | -8.615850e-47 |
| Msa0831520 | Msa1305340 | 0.804204 | 2.416917e-49 | -8.615850e-47 |
| Msa0831520 | Msa1466540 | 0.801837 | 7.455967e-49 | -8.615850e-47 |
| Msa0136070 | Msa0831520 | 0.804405 | 2.194813e-49 | -8.615850e-47 |
| Msa0160550 | Msa0831520 | 0.800475 | 1.416512e-48 | -8.615850e-47 |
| Msa0187130 | Msa0831520 | 0.887364 | 1.522085e-72 | -8.615850e-47 |
| Msa0222890 | Msa0831520 | 0.818759 | 1.657882e-52 | -8.615850e-47 |
| Msa0479970 | Msa0831520 | 0.802232 | 6.185273e-49 | -8.615850e-47 |
| Msa0260680 | Msa0831520 | 0.805983 | 1.025406e-49 | -8.615850e-47 |
| Msa0309770 | Msa0831520 | 0.807604 | 4.661449e-50 | -8.615850e-47 |
| Msa0529890 | Msa0831520 | 0.804948 | 1.690133e-49 | -8.615850e-47 |
| Msa0585560 | Msa0831520 | 0.806939 | 6.446519e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831520 | MtrunA17_Chr5g0438751 | 80.193 | 207 | 5 | 2 | 1 | 173 | 1 | 205 | 1.24e-113 | 331 |
| Msa0831520 | MtrunA17_Chr5g0394731 | 81.132 | 106 | 15 | 1 | 68 | 173 | 14 | 114 | 5.03e-60 | 186 |
| Msa0831520 | MtrunA17_Chr3g0120041 | 38.583 | 254 | 104 | 4 | 5 | 206 | 6 | 259 | 1.41e-54 | 176 |
| Msa0831520 | MtrunA17_Chr7g0250091 | 50.286 | 175 | 82 | 4 | 1 | 173 | 1 | 172 | 2.04e-54 | 178 |
| Msa0831520 | MtrunA17_Chr7g0250081 | 42.718 | 206 | 82 | 1 | 4 | 173 | 3 | 208 | 6.13e-54 | 178 |
| Msa0831520 | MtrunA17_Chr7g0225611 | 40.090 | 222 | 88 | 4 | 34 | 210 | 37 | 258 | 7.97e-52 | 173 |
| Msa0831520 | MtrunA17_Chr3g0119931 | 40.553 | 217 | 86 | 5 | 4 | 180 | 2 | 215 | 1.67e-49 | 162 |
| Msa0831520 | MtrunA17_Chr6g0462811 | 40.476 | 210 | 86 | 4 | 1 | 173 | 1 | 208 | 2.22e-48 | 162 |
| Msa0831520 | MtrunA17_Chr6g0459381 | 43.353 | 173 | 57 | 2 | 42 | 173 | 44 | 216 | 6.72e-46 | 153 |
| Msa0831520 | MtrunA17_Chr3g0120021 | 37.963 | 216 | 75 | 2 | 17 | 173 | 16 | 231 | 8.23e-45 | 155 |
| Msa0831520 | MtrunA17_Chr6g0459401 | 41.618 | 173 | 60 | 2 | 42 | 173 | 44 | 216 | 3.11e-44 | 149 |
| Msa0831520 | MtrunA17_Chr6g0459361 | 50.000 | 140 | 66 | 2 | 38 | 173 | 77 | 216 | 3.52e-44 | 149 |
| Msa0831520 | MtrunA17_Chr6g0459421 | 41.618 | 173 | 60 | 2 | 42 | 173 | 44 | 216 | 3.94e-44 | 149 |
| Msa0831520 | MtrunA17_Chr1g0207891 | 47.967 | 123 | 64 | 0 | 60 | 182 | 95 | 217 | 2.20e-36 | 132 |
| Msa0831520 | MtrunA17_Chr5g0394721 | 80.263 | 76 | 8 | 1 | 168 | 236 | 478 | 553 | 8.20e-31 | 119 |
| Msa0831520 | MtrunA17_Chr6g0462831 | 63.077 | 65 | 24 | 0 | 109 | 173 | 5 | 69 | 1.95e-23 | 95.1 |
| Msa0831520 | MtrunA17_Chr6g0462821 | 53.191 | 47 | 21 | 1 | 60 | 106 | 1 | 46 | 3.22e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831520 | AT5G14180.5 | 35.470 | 234 | 106 | 4 | 5 | 193 | 9 | 242 | 2.68e-46 | 156 |
| Msa0831520 | AT5G14180.3 | 33.835 | 266 | 125 | 6 | 5 | 220 | 9 | 273 | 5.23e-46 | 155 |
| Msa0831520 | AT5G14180.1 | 35.470 | 234 | 106 | 4 | 5 | 193 | 9 | 242 | 4.51e-45 | 155 |
| Msa0831520 | AT5G14180.4 | 48.571 | 140 | 68 | 2 | 57 | 193 | 4 | 142 | 2.43e-43 | 149 |
| Msa0831520 | AT5G14180.2 | 48.507 | 134 | 65 | 2 | 63 | 193 | 1 | 133 | 3.90e-41 | 143 |
| Msa0831520 | AT2G15230.1 | 34.951 | 206 | 115 | 5 | 27 | 230 | 56 | 244 | 1.90e-37 | 135 |
Find 45 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATAATGGATTTGATATT+TGG | 0.128774 | 5_4:-4497675 | Msa0831520:CDS |
| CTTGTCCAATTGTTGATCTT+TGG | 0.172501 | 5_4:+4496974 | None:intergenic |
| TTTCAAATATTTAGGATTAT+TGG | 0.176435 | 5_4:-4497221 | Msa0831520:intron |
| CGAGATTAAGAGCAAGTTAA+AGG | 0.257213 | 5_4:-4496570 | Msa0831520:CDS |
| ATTGATGGCGGGACATGTTC+TGG | 0.263122 | 5_4:-4496528 | Msa0831520:CDS |
| GCATTTCTGTTGGCAGATAA+TGG | 0.272759 | 5_4:-4497688 | Msa0831520:CDS |
| TGTATGTCCATGACTATATT+TGG | 0.309072 | 5_4:+4497633 | None:intergenic |
| ATATTTAGGATTATTGGAAT+TGG | 0.371704 | 5_4:-4497215 | Msa0831520:intron |
| CAATGCAGTAATAGTGCTTA+AGG | 0.377954 | 5_4:+4498298 | None:intergenic |
| CAGTTTGATCATGCACATAC+TGG | 0.396014 | 5_4:+4497151 | None:intergenic |
| TGCACATACTGGAATGTTGC+TGG | 0.419751 | 5_4:+4497162 | None:intergenic |
| CAGTATGTGCATGATCAAAC+TGG | 0.431605 | 5_4:-4497150 | Msa0831520:CDS |
| TTGCACATTCTTTGAGGAGA+TGG | 0.437483 | 5_4:-4496648 | Msa0831520:CDS |
| GGAGGCTTGCACATTCTTTG+AGG | 0.443690 | 5_4:-4496654 | Msa0831520:CDS |
| GTAGGGAACTTTGGTTGCAT+TGG | 0.445434 | 5_4:-4497006 | Msa0831520:intron |
| CATACACCATCATTGAGTTC+TGG | 0.445699 | 5_4:+4498272 | None:intergenic |
| ATAAGCAATTGGACAAAGTA+AGG | 0.449481 | 5_4:+4496938 | None:intergenic |
| ATCTAATCAACATAAGCAAT+TGG | 0.450668 | 5_4:+4496927 | None:intergenic |
| AGGATTATTGGAATTGGTCA+TGG | 0.460448 | 5_4:-4497209 | Msa0831520:CDS |
| AGATCATATTGAGGAATTGA+TGG | 0.472745 | 5_4:-4496543 | Msa0831520:CDS |
| TTGATGGCGGGACATGTTCT+GGG | 0.497923 | 5_4:-4496527 | Msa0831520:CDS |
| GTCTAATAGCGGAAAACTTG+TGG | 0.505009 | 5_4:-4496675 | Msa0831520:CDS |
| CTTAAGCACTATTACTGCAT+TGG | 0.510075 | 5_4:-4498297 | Msa0831520:CDS |
| AGCCTGACTGTGATCTCCAT+TGG | 0.514547 | 5_4:+4496608 | None:intergenic |
| GGATTATTGGAATTGGTCAT+GGG | 0.520687 | 5_4:-4497208 | Msa0831520:CDS |
| TCAATCTCTTGCATTTCTGT+TGG | 0.522500 | 5_4:-4497698 | Msa0831520:CDS |
| CTATGCTTGTGAAGAACACT+TGG | 0.522607 | 5_4:-4498225 | Msa0831520:intron |
| AATGCAGTAATAGTGCTTAA+GGG | 0.525404 | 5_4:+4498299 | None:intergenic |
| AATGCAAGAGATTGACTTGG+TGG | 0.533436 | 5_4:+4497706 | None:intergenic |
| CTCCAATGGAGATCACAGTC+AGG | 0.560382 | 5_4:-4496610 | Msa0831520:CDS |
| AAAGGAGAAAGATCATATTG+AGG | 0.564995 | 5_4:-4496552 | Msa0831520:CDS |
| CTCGAAGGGATTTACTCCAA+TGG | 0.572881 | 5_4:-4496624 | Msa0831520:CDS |
| TTTGAGGAGATGGTCTCGAA+GGG | 0.575088 | 5_4:-4496638 | Msa0831520:CDS |
| ACACTTGTGATTCTCTTCTG+TGG | 0.580138 | 5_4:-4498353 | Msa0831520:CDS |
| ACACTACGTTGGTCACTCAC+AGG | 0.582125 | 5_4:-4497118 | Msa0831520:intron |
| CTTTGAGGAGATGGTCTCGA+AGG | 0.586496 | 5_4:-4496639 | Msa0831520:CDS |
| CATATTGAGGAATTGATGGC+GGG | 0.590923 | 5_4:-4496539 | Msa0831520:CDS |
| CGAGGAACCAAATATAGTCA+TGG | 0.610090 | 5_4:-4497640 | Msa0831520:CDS |
| TAATAGCGGAAAACTTGTGG+AGG | 0.646053 | 5_4:-4496672 | Msa0831520:CDS |
| TAACAGAGTCTGTCTAATAG+CGG | 0.652600 | 5_4:-4496686 | Msa0831520:intron |
| TCATATTGAGGAATTGATGG+CGG | 0.660940 | 5_4:-4496540 | Msa0831520:CDS |
| TTGGCACCAGAACTCAATGA+TGG | 0.662541 | 5_4:-4498278 | Msa0831520:CDS |
| AGAAATGCAAGAGATTGACT+TGG | 0.662580 | 5_4:+4497703 | None:intergenic |
| ATTTGGATTGCTAACACACG+AGG | 0.667950 | 5_4:-4497658 | Msa0831520:CDS |
| TCGTCACTATTGAAGACACA+AGG | 0.696315 | 5_4:-4498248 | Msa0831520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTACTATATTACA+TGG | - | chr5_4:4497318-4497337 | Msa0831520:intron | 10.0% |
| !!! | TTTTTTTTTACTATATTACA+TGG | - | chr5_4:4497318-4497337 | Msa0831520:intron | 10.0% |
| !!! | ATATGTATGTAATTGTTTTT+AGG | - | chr5_4:4496832-4496851 | Msa0831520:intron | 15.0% |
| !!! | TTTCAAATATTTAGGATTAT+TGG | - | chr5_4:4497673-4497692 | Msa0831520:CDS | 15.0% |
| !! | ATTGAATTATATATATGAAG+AGG | + | chr5_4:4497834-4497853 | None:intergenic | 15.0% |
| !!! | ATATGTATGTAATTGTTTTT+AGG | - | chr5_4:4496832-4496851 | Msa0831520:intron | 15.0% |
| !!! | TTTCAAATATTTAGGATTAT+TGG | - | chr5_4:4497673-4497692 | Msa0831520:CDS | 15.0% |
| !! | ATTGAATTATATATATGAAG+AGG | + | chr5_4:4497834-4497853 | None:intergenic | 15.0% |
| !! | TATAAAAATAGCTTATGTCA+TGG | - | chr5_4:4497025-4497044 | Msa0831520:intron | 20.0% |
| !!! | ATCATTTTCTAATAACAACT+CGG | - | chr5_4:4497283-4497302 | Msa0831520:intron | 20.0% |
| !!! | CAACATATTCTTTTAAATTG+TGG | + | chr5_4:4497470-4497489 | None:intergenic | 20.0% |
| !! | ATATCAGGTTTCAAATATTT+AGG | - | chr5_4:4497665-4497684 | Msa0831520:CDS | 20.0% |
| !!! | ATATTTAGGATTATTGGAAT+TGG | - | chr5_4:4497679-4497698 | Msa0831520:CDS | 20.0% |
| !! | TATAAAAATAGCTTATGTCA+TGG | - | chr5_4:4497025-4497044 | Msa0831520:intron | 20.0% |
| !!! | ATCATTTTCTAATAACAACT+CGG | - | chr5_4:4497283-4497302 | Msa0831520:intron | 20.0% |
| !!! | CAACATATTCTTTTAAATTG+TGG | + | chr5_4:4497470-4497489 | None:intergenic | 20.0% |
| !! | ATATCAGGTTTCAAATATTT+AGG | - | chr5_4:4497665-4497684 | Msa0831520:CDS | 20.0% |
| !!! | ATATTTAGGATTATTGGAAT+TGG | - | chr5_4:4497679-4497698 | Msa0831520:CDS | 20.0% |
| ! | CTACAACATACTATAACTAT+AGG | - | chr5_4:4496936-4496955 | Msa0831520:intron | 25.0% |
| ! | TTGAGAATGAAAACAACTTA+TGG | + | chr5_4:4497051-4497070 | None:intergenic | 25.0% |
| !!! | ATAAGTTGTTTTCATTCTCA+AGG | - | chr5_4:4497050-4497069 | Msa0831520:intron | 25.0% |
| ! | TGCATAAGCATTTATATGAT+TGG | - | chr5_4:4497128-4497147 | Msa0831520:CDS | 25.0% |
| !!! | CAGATAATGGATTTGATATT+TGG | - | chr5_4:4497219-4497238 | Msa0831520:intron | 25.0% |
| ! | TATTAGCAATGGAATCAAAT+TGG | + | chr5_4:4497648-4497667 | None:intergenic | 25.0% |
| !! | ATTGTTGAATTCCTTTTTGT+AGG | - | chr5_4:4497870-4497889 | Msa0831520:intron | 25.0% |
| !! | TTGTTGAATTCCTTTTTGTA+GGG | - | chr5_4:4497871-4497890 | Msa0831520:intron | 25.0% |
| !! | TTTTTCCAAAGATCAACAAT+TGG | - | chr5_4:4497915-4497934 | Msa0831520:intron | 25.0% |
| ! | ATCTAATCAACATAAGCAAT+TGG | + | chr5_4:4497970-4497989 | None:intergenic | 25.0% |
| !!! | ATTTTCGAATTTAGCCTTAA+AGG | - | chr5_4:4498168-4498187 | Msa0831520:intron | 25.0% |
| !!! | TTTTCGAATTTAGCCTTAAA+GGG | - | chr5_4:4498169-4498188 | Msa0831520:intron | 25.0% |
| ! | CTACAACATACTATAACTAT+AGG | - | chr5_4:4496936-4496955 | Msa0831520:intron | 25.0% |
| ! | TTGAGAATGAAAACAACTTA+TGG | + | chr5_4:4497051-4497070 | None:intergenic | 25.0% |
| !!! | ATAAGTTGTTTTCATTCTCA+AGG | - | chr5_4:4497050-4497069 | Msa0831520:intron | 25.0% |
| ! | TGCATAAGCATTTATATGAT+TGG | - | chr5_4:4497128-4497147 | Msa0831520:CDS | 25.0% |
| !!! | CAGATAATGGATTTGATATT+TGG | - | chr5_4:4497219-4497238 | Msa0831520:intron | 25.0% |
| ! | TATTAGCAATGGAATCAAAT+TGG | + | chr5_4:4497648-4497667 | None:intergenic | 25.0% |
| !! | ATTGTTGAATTCCTTTTTGT+AGG | - | chr5_4:4497870-4497889 | Msa0831520:intron | 25.0% |
| !! | TTGTTGAATTCCTTTTTGTA+GGG | - | chr5_4:4497871-4497890 | Msa0831520:intron | 25.0% |
| !! | TTTTTCCAAAGATCAACAAT+TGG | - | chr5_4:4497915-4497934 | Msa0831520:intron | 25.0% |
| ! | ATCTAATCAACATAAGCAAT+TGG | + | chr5_4:4497970-4497989 | None:intergenic | 25.0% |
| !!! | ATTTTCGAATTTAGCCTTAA+AGG | - | chr5_4:4498168-4498187 | Msa0831520:intron | 25.0% |
| !!! | TTTTCGAATTTAGCCTTAAA+GGG | - | chr5_4:4498169-4498188 | Msa0831520:intron | 25.0% |
| AATGCAGTAATAGTGCTTAA+GGG | + | chr5_4:4496598-4496617 | None:intergenic | 30.0% | |
| GCAATTATATACATAGTAGC+TGG | + | chr5_4:4496771-4496790 | None:intergenic | 30.0% | |
| !! | TTTTAGGTGACAACAAAAGA+TGG | - | chr5_4:4496848-4496867 | Msa0831520:intron | 30.0% |
| ATAACTGGTATACTATTTCC+AGG | + | chr5_4:4496915-4496934 | None:intergenic | 30.0% | |
| ATAGTATGTTGTAGCATAAC+TGG | + | chr5_4:4496930-4496949 | None:intergenic | 30.0% | |
| AACATACTATAACTATAGGC+TGG | - | chr5_4:4496940-4496959 | Msa0831520:CDS | 30.0% | |
| AAACATGTGTGATACTGTTT+AGG | - | chr5_4:4496996-4497015 | Msa0831520:CDS | 30.0% | |
| !! | TATGATTGGTGTGTTTTTGT+AGG | - | chr5_4:4497142-4497161 | Msa0831520:CDS | 30.0% |
| TGTATGTCCATGACTATATT+TGG | + | chr5_4:4497264-4497283 | None:intergenic | 30.0% | |
| !!! | TATTACATGGTTTTAAGTCG+CGG | - | chr5_4:4497331-4497350 | Msa0831520:intron | 30.0% |
| TCTCAAAATCCTTTATGTTG+TGG | - | chr5_4:4497425-4497444 | Msa0831520:intron | 30.0% | |
| ! | TTTTAAATTGTGGTCTGCAA+CGG | + | chr5_4:4497460-4497479 | None:intergenic | 30.0% |
| ! | GGATGATTTTGGATATTCAA+TGG | + | chr5_4:4497522-4497541 | None:intergenic | 30.0% |
| ! | TATAATTCCACGGATGATTT+TGG | + | chr5_4:4497533-4497552 | None:intergenic | 30.0% |
| TTGATTCCATTGCTAATATC+AGG | - | chr5_4:4497650-4497669 | Msa0831520:CDS | 30.0% | |
| TTGAAACCTGATATTAGCAA+TGG | + | chr5_4:4497659-4497678 | None:intergenic | 30.0% | |
| ATAAGCAATTGGACAAAGTA+AGG | + | chr5_4:4497959-4497978 | None:intergenic | 30.0% | |
| AGAAACTTACTTACCCTTTA+AGG | + | chr5_4:4498185-4498204 | None:intergenic | 30.0% | |
| AAAGGAGAAAGATCATATTG+AGG | - | chr5_4:4498342-4498361 | Msa0831520:CDS | 30.0% | |
| AGATCATATTGAGGAATTGA+TGG | - | chr5_4:4498351-4498370 | Msa0831520:CDS | 30.0% | |
| AATGCAGTAATAGTGCTTAA+GGG | + | chr5_4:4496598-4496617 | None:intergenic | 30.0% | |
| GCAATTATATACATAGTAGC+TGG | + | chr5_4:4496771-4496790 | None:intergenic | 30.0% | |
| !! | TTTTAGGTGACAACAAAAGA+TGG | - | chr5_4:4496848-4496867 | Msa0831520:intron | 30.0% |
| ATAACTGGTATACTATTTCC+AGG | + | chr5_4:4496915-4496934 | None:intergenic | 30.0% | |
| ATAGTATGTTGTAGCATAAC+TGG | + | chr5_4:4496930-4496949 | None:intergenic | 30.0% | |
| AACATACTATAACTATAGGC+TGG | - | chr5_4:4496940-4496959 | Msa0831520:CDS | 30.0% | |
| AAACATGTGTGATACTGTTT+AGG | - | chr5_4:4496996-4497015 | Msa0831520:CDS | 30.0% | |
| !! | TATGATTGGTGTGTTTTTGT+AGG | - | chr5_4:4497142-4497161 | Msa0831520:CDS | 30.0% |
| TGTATGTCCATGACTATATT+TGG | + | chr5_4:4497264-4497283 | None:intergenic | 30.0% | |
| !!! | TATTACATGGTTTTAAGTCG+CGG | - | chr5_4:4497331-4497350 | Msa0831520:intron | 30.0% |
| TCTCAAAATCCTTTATGTTG+TGG | - | chr5_4:4497425-4497444 | Msa0831520:intron | 30.0% | |
| ! | TTTTAAATTGTGGTCTGCAA+CGG | + | chr5_4:4497460-4497479 | None:intergenic | 30.0% |
| ! | GGATGATTTTGGATATTCAA+TGG | + | chr5_4:4497522-4497541 | None:intergenic | 30.0% |
| ! | TATAATTCCACGGATGATTT+TGG | + | chr5_4:4497533-4497552 | None:intergenic | 30.0% |
| TTGATTCCATTGCTAATATC+AGG | - | chr5_4:4497650-4497669 | Msa0831520:CDS | 30.0% | |
| TTGAAACCTGATATTAGCAA+TGG | + | chr5_4:4497659-4497678 | None:intergenic | 30.0% | |
| ATAAGCAATTGGACAAAGTA+AGG | + | chr5_4:4497959-4497978 | None:intergenic | 30.0% | |
| AGAAACTTACTTACCCTTTA+AGG | + | chr5_4:4498185-4498204 | None:intergenic | 30.0% | |
| AAAGGAGAAAGATCATATTG+AGG | - | chr5_4:4498342-4498361 | Msa0831520:CDS | 30.0% | |
| AGATCATATTGAGGAATTGA+TGG | - | chr5_4:4498351-4498370 | Msa0831520:CDS | 30.0% | |
| CAATGCAGTAATAGTGCTTA+AGG | + | chr5_4:4496599-4496618 | None:intergenic | 35.0% | |
| CTTAAGCACTATTACTGCAT+TGG | - | chr5_4:4496597-4496616 | Msa0831520:CDS | 35.0% | |
| GCAAAGAATTCTACCAAAGA+AGG | - | chr5_4:4496886-4496905 | Msa0831520:intron | 35.0% | |
| TATTTCCAGGTTTCCTTCTT+TGG | + | chr5_4:4496902-4496921 | None:intergenic | 35.0% | |
| !! | ATTGGTGTGTTTTTGTAGGA+TGG | - | chr5_4:4497146-4497165 | Msa0831520:CDS | 35.0% |
| AGAAATGCAAGAGATTGACT+TGG | + | chr5_4:4497194-4497213 | None:intergenic | 35.0% | |
| TCAATCTCTTGCATTTCTGT+TGG | - | chr5_4:4497196-4497215 | Msa0831520:CDS | 35.0% | |
| ! | ATTGACTGCATTTTTCCACA+AGG | + | chr5_4:4497369-4497388 | None:intergenic | 35.0% |
| !!! | GGATTTTGAGATCTTCACAA+TGG | + | chr5_4:4497416-4497435 | None:intergenic | 35.0% |
| AATATGTTGCTGCATTTCTC+TGG | - | chr5_4:4497481-4497500 | Msa0831520:intron | 35.0% | |
| TGAATATCCAAAATCATCCG+TGG | - | chr5_4:4497523-4497542 | Msa0831520:intron | 35.0% | |
| ! | AGATTTTCAATTTCGAGGAC+TGG | + | chr5_4:4497598-4497617 | None:intergenic | 35.0% |
| GTCCTCGAAATTGAAAATCT+CGG | - | chr5_4:4497598-4497617 | Msa0831520:intron | 35.0% | |
| ! | ATCCGAGATTTTCAATTTCG+AGG | + | chr5_4:4497603-4497622 | None:intergenic | 35.0% |
| ! | CGGATCATGTTAGTACTTTT+AGG | - | chr5_4:4497618-4497637 | Msa0831520:CDS | 35.0% |
| AGGATTATTGGAATTGGTCA+TGG | - | chr5_4:4497685-4497704 | Msa0831520:CDS | 35.0% | |
| GGATTATTGGAATTGGTCAT+GGG | - | chr5_4:4497686-4497705 | Msa0831520:CDS | 35.0% | |
| TCACTCACAGGTGATTTAAT+TGG | - | chr5_4:4497788-4497807 | Msa0831520:intron | 35.0% | |
| ! | TTCCTTTTTGTAGGGAACTT+TGG | - | chr5_4:4497879-4497898 | Msa0831520:intron | 35.0% |
| AACCAAAGTTCCCTACAAAA+AGG | + | chr5_4:4497884-4497903 | None:intergenic | 35.0% | |
| CTTGTCCAATTGTTGATCTT+TGG | + | chr5_4:4497923-4497942 | None:intergenic | 35.0% | |
| TAACAGAGTCTGTCTAATAG+CGG | - | chr5_4:4498208-4498227 | Msa0831520:intron | 35.0% | |
| CGAGATTAAGAGCAAGTTAA+AGG | - | chr5_4:4498324-4498343 | Msa0831520:CDS | 35.0% | |
| TCATATTGAGGAATTGATGG+CGG | - | chr5_4:4498354-4498373 | Msa0831520:CDS | 35.0% | |
| CAATGCAGTAATAGTGCTTA+AGG | + | chr5_4:4496599-4496618 | None:intergenic | 35.0% | |
| CTTAAGCACTATTACTGCAT+TGG | - | chr5_4:4496597-4496616 | Msa0831520:CDS | 35.0% | |
| GCAAAGAATTCTACCAAAGA+AGG | - | chr5_4:4496886-4496905 | Msa0831520:intron | 35.0% | |
| TATTTCCAGGTTTCCTTCTT+TGG | + | chr5_4:4496902-4496921 | None:intergenic | 35.0% | |
| !! | ATTGGTGTGTTTTTGTAGGA+TGG | - | chr5_4:4497146-4497165 | Msa0831520:CDS | 35.0% |
| AGAAATGCAAGAGATTGACT+TGG | + | chr5_4:4497194-4497213 | None:intergenic | 35.0% | |
| TCAATCTCTTGCATTTCTGT+TGG | - | chr5_4:4497196-4497215 | Msa0831520:CDS | 35.0% | |
| ! | ATTGACTGCATTTTTCCACA+AGG | + | chr5_4:4497369-4497388 | None:intergenic | 35.0% |
| !!! | GGATTTTGAGATCTTCACAA+TGG | + | chr5_4:4497416-4497435 | None:intergenic | 35.0% |
| AATATGTTGCTGCATTTCTC+TGG | - | chr5_4:4497481-4497500 | Msa0831520:intron | 35.0% | |
| TGAATATCCAAAATCATCCG+TGG | - | chr5_4:4497523-4497542 | Msa0831520:intron | 35.0% | |
| ! | AGATTTTCAATTTCGAGGAC+TGG | + | chr5_4:4497598-4497617 | None:intergenic | 35.0% |
| GTCCTCGAAATTGAAAATCT+CGG | - | chr5_4:4497598-4497617 | Msa0831520:intron | 35.0% | |
| ! | ATCCGAGATTTTCAATTTCG+AGG | + | chr5_4:4497603-4497622 | None:intergenic | 35.0% |
| ! | CGGATCATGTTAGTACTTTT+AGG | - | chr5_4:4497618-4497637 | Msa0831520:CDS | 35.0% |
| AGGATTATTGGAATTGGTCA+TGG | - | chr5_4:4497685-4497704 | Msa0831520:CDS | 35.0% | |
| GGATTATTGGAATTGGTCAT+GGG | - | chr5_4:4497686-4497705 | Msa0831520:CDS | 35.0% | |
| TCACTCACAGGTGATTTAAT+TGG | - | chr5_4:4497788-4497807 | Msa0831520:intron | 35.0% | |
| ! | TTCCTTTTTGTAGGGAACTT+TGG | - | chr5_4:4497879-4497898 | Msa0831520:intron | 35.0% |
| AACCAAAGTTCCCTACAAAA+AGG | + | chr5_4:4497884-4497903 | None:intergenic | 35.0% | |
| CTTGTCCAATTGTTGATCTT+TGG | + | chr5_4:4497923-4497942 | None:intergenic | 35.0% | |
| TAACAGAGTCTGTCTAATAG+CGG | - | chr5_4:4498208-4498227 | Msa0831520:intron | 35.0% | |
| CGAGATTAAGAGCAAGTTAA+AGG | - | chr5_4:4498324-4498343 | Msa0831520:CDS | 35.0% | |
| TCATATTGAGGAATTGATGG+CGG | - | chr5_4:4498354-4498373 | Msa0831520:CDS | 35.0% | |
| ACACTTGTGATTCTCTTCTG+TGG | - | chr5_4:4496541-4496560 | Msa0831520:CDS | 40.0% | |
| CATACACCATCATTGAGTTC+TGG | + | chr5_4:4496625-4496644 | None:intergenic | 40.0% | |
| TCGTCACTATTGAAGACACA+AGG | - | chr5_4:4496646-4496665 | Msa0831520:CDS | 40.0% | |
| CTATGCTTGTGAAGAACACT+TGG | - | chr5_4:4496669-4496688 | Msa0831520:CDS | 40.0% | |
| TTCTACCAAAGAAGGAAACC+TGG | - | chr5_4:4496894-4496913 | Msa0831520:intron | 40.0% | |
| ! | TTTTGTAGGATGGTGTGACA+TGG | - | chr5_4:4497156-4497175 | Msa0831520:CDS | 40.0% |
| !! | AATGCAAGAGATTGACTTGG+TGG | + | chr5_4:4497191-4497210 | None:intergenic | 40.0% |
| GCATTTCTGTTGGCAGATAA+TGG | - | chr5_4:4497206-4497225 | Msa0831520:CDS | 40.0% | |
| ATTTGGATTGCTAACACACG+AGG | - | chr5_4:4497236-4497255 | Msa0831520:intron | 40.0% | |
| CGAGGAACCAAATATAGTCA+TGG | - | chr5_4:4497254-4497273 | Msa0831520:intron | 40.0% | |
| GTGGAAAAATGCAGTCAATG+TGG | - | chr5_4:4497370-4497389 | Msa0831520:intron | 40.0% | |
| TGTGGTCAAAATTGCAGTTG+CGG | - | chr5_4:4497388-4497407 | Msa0831520:intron | 40.0% | |
| ATTAAGGGGCCACAACATAA+AGG | + | chr5_4:4497437-4497456 | None:intergenic | 40.0% | |
| !! | GAGAGCGTCTTATAATTCCA+CGG | + | chr5_4:4497543-4497562 | None:intergenic | 40.0% |
| CAGTTTGATCATGCACATAC+TGG | + | chr5_4:4497746-4497765 | None:intergenic | 40.0% | |
| CAGTATGTGCATGATCAAAC+TGG | - | chr5_4:4497744-4497763 | Msa0831520:intron | 40.0% | |
| GGACAAAAACTACACTACGT+TGG | - | chr5_4:4497765-4497784 | Msa0831520:intron | 40.0% | |
| !!! | AGCATTTTTTGCTACAGGTG+AGG | + | chr5_4:4497995-4498014 | None:intergenic | 40.0% |
| !!! | TCAGCAGCATTTTTTGCTAC+AGG | + | chr5_4:4498000-4498019 | None:intergenic | 40.0% |
| GTGTTACCTCTGCAATGAAA+TGG | + | chr5_4:4498023-4498042 | None:intergenic | 40.0% | |
| ! | GTCTAATAGCGGAAAACTTG+TGG | - | chr5_4:4498219-4498238 | Msa0831520:intron | 40.0% |
| ! | TAATAGCGGAAAACTTGTGG+AGG | - | chr5_4:4498222-4498241 | Msa0831520:intron | 40.0% |
| ! | TTGCACATTCTTTGAGGAGA+TGG | - | chr5_4:4498246-4498265 | Msa0831520:CDS | 40.0% |
| ! | CATATTGAGGAATTGATGGC+GGG | - | chr5_4:4498355-4498374 | Msa0831520:CDS | 40.0% |
| ACACTTGTGATTCTCTTCTG+TGG | - | chr5_4:4496541-4496560 | Msa0831520:CDS | 40.0% | |
| CATACACCATCATTGAGTTC+TGG | + | chr5_4:4496625-4496644 | None:intergenic | 40.0% | |
| TCGTCACTATTGAAGACACA+AGG | - | chr5_4:4496646-4496665 | Msa0831520:CDS | 40.0% | |
| CTATGCTTGTGAAGAACACT+TGG | - | chr5_4:4496669-4496688 | Msa0831520:CDS | 40.0% | |
| TTCTACCAAAGAAGGAAACC+TGG | - | chr5_4:4496894-4496913 | Msa0831520:intron | 40.0% | |
| ! | TTTTGTAGGATGGTGTGACA+TGG | - | chr5_4:4497156-4497175 | Msa0831520:CDS | 40.0% |
| !! | AATGCAAGAGATTGACTTGG+TGG | + | chr5_4:4497191-4497210 | None:intergenic | 40.0% |
| GCATTTCTGTTGGCAGATAA+TGG | - | chr5_4:4497206-4497225 | Msa0831520:CDS | 40.0% | |
| ATTTGGATTGCTAACACACG+AGG | - | chr5_4:4497236-4497255 | Msa0831520:intron | 40.0% | |
| CGAGGAACCAAATATAGTCA+TGG | - | chr5_4:4497254-4497273 | Msa0831520:intron | 40.0% | |
| GTGGAAAAATGCAGTCAATG+TGG | - | chr5_4:4497370-4497389 | Msa0831520:intron | 40.0% | |
| TGTGGTCAAAATTGCAGTTG+CGG | - | chr5_4:4497388-4497407 | Msa0831520:intron | 40.0% | |
| ATTAAGGGGCCACAACATAA+AGG | + | chr5_4:4497437-4497456 | None:intergenic | 40.0% | |
| !! | GAGAGCGTCTTATAATTCCA+CGG | + | chr5_4:4497543-4497562 | None:intergenic | 40.0% |
| CAGTTTGATCATGCACATAC+TGG | + | chr5_4:4497746-4497765 | None:intergenic | 40.0% | |
| CAGTATGTGCATGATCAAAC+TGG | - | chr5_4:4497744-4497763 | Msa0831520:intron | 40.0% | |
| GGACAAAAACTACACTACGT+TGG | - | chr5_4:4497765-4497784 | Msa0831520:intron | 40.0% | |
| !!! | AGCATTTTTTGCTACAGGTG+AGG | + | chr5_4:4497995-4498014 | None:intergenic | 40.0% |
| !!! | TCAGCAGCATTTTTTGCTAC+AGG | + | chr5_4:4498000-4498019 | None:intergenic | 40.0% |
| GTGTTACCTCTGCAATGAAA+TGG | + | chr5_4:4498023-4498042 | None:intergenic | 40.0% | |
| ! | GTCTAATAGCGGAAAACTTG+TGG | - | chr5_4:4498219-4498238 | Msa0831520:intron | 40.0% |
| ! | TAATAGCGGAAAACTTGTGG+AGG | - | chr5_4:4498222-4498241 | Msa0831520:intron | 40.0% |
| ! | TTGCACATTCTTTGAGGAGA+TGG | - | chr5_4:4498246-4498265 | Msa0831520:CDS | 40.0% |
| ! | CATATTGAGGAATTGATGGC+GGG | - | chr5_4:4498355-4498374 | Msa0831520:CDS | 40.0% |
| TTGGCACCAGAACTCAATGA+TGG | - | chr5_4:4496616-4496635 | Msa0831520:CDS | 45.0% | |
| CGGTTACACTACAAACCTTG+TGG | - | chr5_4:4497351-4497370 | Msa0831520:intron | 45.0% | |
| !! | TGTGGTCTGCAACGGATTAA+GGG | + | chr5_4:4497452-4497471 | None:intergenic | 45.0% |
| !! | TTGTGGTCTGCAACGGATTA+AGG | + | chr5_4:4497453-4497472 | None:intergenic | 45.0% |
| TGCACATACTGGAATGTTGC+TGG | + | chr5_4:4497735-4497754 | None:intergenic | 45.0% | |
| GTAGGGAACTTTGGTTGCAT+TGG | - | chr5_4:4497888-4497907 | Msa0831520:intron | 45.0% | |
| TGCTGACCATTTCATTGCAG+AGG | - | chr5_4:4498014-4498033 | Msa0831520:intron | 45.0% | |
| TTTGAGGAGATGGTCTCGAA+GGG | - | chr5_4:4498256-4498275 | Msa0831520:CDS | 45.0% | |
| CTCGAAGGGATTTACTCCAA+TGG | - | chr5_4:4498270-4498289 | Msa0831520:CDS | 45.0% | |
| TTGGCACCAGAACTCAATGA+TGG | - | chr5_4:4496616-4496635 | Msa0831520:CDS | 45.0% | |
| CGGTTACACTACAAACCTTG+TGG | - | chr5_4:4497351-4497370 | Msa0831520:intron | 45.0% | |
| !! | TGTGGTCTGCAACGGATTAA+GGG | + | chr5_4:4497452-4497471 | None:intergenic | 45.0% |
| !! | TTGTGGTCTGCAACGGATTA+AGG | + | chr5_4:4497453-4497472 | None:intergenic | 45.0% |
| TGCACATACTGGAATGTTGC+TGG | + | chr5_4:4497735-4497754 | None:intergenic | 45.0% | |
| GTAGGGAACTTTGGTTGCAT+TGG | - | chr5_4:4497888-4497907 | Msa0831520:intron | 45.0% | |
| TGCTGACCATTTCATTGCAG+AGG | - | chr5_4:4498014-4498033 | Msa0831520:intron | 45.0% | |
| TTTGAGGAGATGGTCTCGAA+GGG | - | chr5_4:4498256-4498275 | Msa0831520:CDS | 45.0% | |
| CTCGAAGGGATTTACTCCAA+TGG | - | chr5_4:4498270-4498289 | Msa0831520:CDS | 45.0% | |
| !! | GTGGTCTGCAACGGATTAAG+GGG | + | chr5_4:4497451-4497470 | None:intergenic | 50.0% |
| GACGCTCTCAACTTAGACTC+TGG | - | chr5_4:4497554-4497573 | Msa0831520:intron | 50.0% | |
| ACACTACGTTGGTCACTCAC+AGG | - | chr5_4:4497776-4497795 | Msa0831520:intron | 50.0% | |
| GGAGGCTTGCACATTCTTTG+AGG | - | chr5_4:4498240-4498259 | Msa0831520:CDS | 50.0% | |
| ! | CTTTGAGGAGATGGTCTCGA+AGG | - | chr5_4:4498255-4498274 | Msa0831520:CDS | 50.0% |
| CTCCAATGGAGATCACAGTC+AGG | - | chr5_4:4498284-4498303 | Msa0831520:CDS | 50.0% | |
| AGCCTGACTGTGATCTCCAT+TGG | + | chr5_4:4498289-4498308 | None:intergenic | 50.0% | |
| !! | ATTGATGGCGGGACATGTTC+TGG | - | chr5_4:4498366-4498385 | Msa0831520:CDS | 50.0% |
| !! | TTGATGGCGGGACATGTTCT+GGG | - | chr5_4:4498367-4498386 | Msa0831520:CDS | 50.0% |
| !! | GTGGTCTGCAACGGATTAAG+GGG | + | chr5_4:4497451-4497470 | None:intergenic | 50.0% |
| GACGCTCTCAACTTAGACTC+TGG | - | chr5_4:4497554-4497573 | Msa0831520:intron | 50.0% | |
| ACACTACGTTGGTCACTCAC+AGG | - | chr5_4:4497776-4497795 | Msa0831520:intron | 50.0% | |
| GGAGGCTTGCACATTCTTTG+AGG | - | chr5_4:4498240-4498259 | Msa0831520:CDS | 50.0% | |
| ! | CTTTGAGGAGATGGTCTCGA+AGG | - | chr5_4:4498255-4498274 | Msa0831520:CDS | 50.0% |
| CTCCAATGGAGATCACAGTC+AGG | - | chr5_4:4498284-4498303 | Msa0831520:CDS | 50.0% | |
| AGCCTGACTGTGATCTCCAT+TGG | + | chr5_4:4498289-4498308 | None:intergenic | 50.0% | |
| !! | ATTGATGGCGGGACATGTTC+TGG | - | chr5_4:4498366-4498385 | Msa0831520:CDS | 50.0% |
| !! | TTGATGGCGGGACATGTTCT+GGG | - | chr5_4:4498367-4498386 | Msa0831520:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 4496511 | 4498405 | 4496511 | ID=Msa0831520;Name=Msa0831520 |
| chr5_4 | mRNA | 4496511 | 4498405 | 4496511 | ID=Msa0831520-mRNA-1;Parent=Msa0831520;Name=Msa0831520-mRNA-1;_AED=0.40;_eAED=0.41;_QI=0|0|0|1|1|1|5|0|236 |
| chr5_4 | exon | 4498226 | 4498405 | 4498226 | ID=Msa0831520-mRNA-1:exon:1920;Parent=Msa0831520-mRNA-1 |
| chr5_4 | exon | 4497612 | 4497752 | 4497612 | ID=Msa0831520-mRNA-1:exon:1919;Parent=Msa0831520-mRNA-1 |
| chr5_4 | exon | 4497119 | 4497229 | 4497119 | ID=Msa0831520-mRNA-1:exon:1918;Parent=Msa0831520-mRNA-1 |
| chr5_4 | exon | 4496938 | 4497024 | 4496938 | ID=Msa0831520-mRNA-1:exon:1917;Parent=Msa0831520-mRNA-1 |
| chr5_4 | exon | 4496511 | 4496702 | 4496511 | ID=Msa0831520-mRNA-1:exon:1916;Parent=Msa0831520-mRNA-1 |
| chr5_4 | CDS | 4498226 | 4498405 | 4498226 | ID=Msa0831520-mRNA-1:cds;Parent=Msa0831520-mRNA-1 |
| chr5_4 | CDS | 4497612 | 4497752 | 4497612 | ID=Msa0831520-mRNA-1:cds;Parent=Msa0831520-mRNA-1 |
| chr5_4 | CDS | 4497119 | 4497229 | 4497119 | ID=Msa0831520-mRNA-1:cds;Parent=Msa0831520-mRNA-1 |
| chr5_4 | CDS | 4496938 | 4497024 | 4496938 | ID=Msa0831520-mRNA-1:cds;Parent=Msa0831520-mRNA-1 |
| chr5_4 | CDS | 4496511 | 4496702 | 4496511 | ID=Msa0831520-mRNA-1:cds;Parent=Msa0831520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
